Citrus Sinensis ID: 009741

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
Protein Sequence
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Secondary Structure (PSIPRED)
cccEEcccccccEEEEEEEEEEEccccccccccccccEEEEEEccEEEEEEccccccccccccEEEEEEcccccEEEEEEEEcccccccccccEEEEEcccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHccccEEEEEccEEEEEEcccccEEEEEEEcccccEEEccccccccccEEEEEEccccccccccccccccccEEEEEEEEccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHccccccHHHHHHHHccccEEEEcccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEccEEEHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEEcccccccccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEccccccEEEEEEEEcccccccccEEEEEEEcccHcccccEEEcccccccccEEEEEEEEcccccccccccHcccccHHHHHcccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEcHHHHEEEHHHcccEEEEEEEcccHHHEEEcccccccccEEEEEEcccccccccccccccccEEEEEEEHccHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHcccccHHHHHHHHHHcccccEEEccccccccccccEEEEEEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEEEEEEEEEEEccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLiganlngtsdpyaiitcgsekrfssmvpgsrypmwgeefnfsvdelpvQIIVTIYDWDIIWKSTVLGSVIVTVesegqtgavwytldspsgqvclhiktiklpvnasrvmngyAGANARRrasldkqgptvvhqkpgplqtiFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKviipigdideiqrsqhafinPAITIILRmgagghgvpplgspdgrvryKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAhsssiggsrrQAKIVEEtvtkpekrqpfikeEVLVGIyndvfpctaEQFFTLLFSDDSKFTNEYRaarkdsnlvmgqwhaadeydgQVREVAFRSLckspiyprdtamtesqhavlspdkkIFVFETVqqahdvpfgsyfeihgRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICtsggetnnqsstpsvtpdcn
Flexible Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRahsssiggsrrqakiveetvtkpekrqpfikEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFkiktgavnkyKKEVELMLETARSYIKICTsggetnnqsstpsvtpdcn
Low Complexity Region (SEG)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMngyaganarrraSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLeaekkekaesaLRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Disordered region (IsUnstruct)
************AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGA********************GPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT*************************************************FIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMT**QHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICT*******************
Disordered Region (DISOPRED)
*************YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE****************GQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG*************VRYKFASFWNRNHALRQLQRTAKN***********************************ETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVM**********GQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET****************************
Disordered Region (DISEMBL)
********QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAE***********************KIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDT*********LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSG*****************
Disordered Region (DISPRO)
**********NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGG******GSPDGRVRYKFASFWNRNHALRQLQRTAKNYHT****************************************RQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKI*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAxxxxxxxxxxxxxxxxxxxxxKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	527	2.2.26 [Sep-21-2011]
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.766	0.396	0.236	1e-17
Q9FGS8	1027	C2 and GRAM domain-contai	no	no	0.869	0.445	0.204	7e-16
O42976	764	Uncharacterized membrane	yes	no	0.231	0.159	0.283	9e-11
Q5M7N9	889	Extended synaptotagmin-3	yes	no	0.239	0.141	0.313	7e-09
O43374	803	Ras GTPase-activating pro	yes	no	0.166	0.109	0.325	2e-08
C9J798	803	Putative Ras GTPase-activ	yes	no	0.166	0.109	0.325	2e-08
Q6PFQ7	802	Ras GTPase-activating pro	no	no	0.189	0.124	0.291	2e-07
Q9UPW8	1703	Protein unc-13 homolog A	no	no	0.204	0.063	0.296	5e-07
Q4KUS2	1712	Protein unc-13 homolog A	no	no	0.204	0.063	0.296	5e-07
P27715	2155	Phorbol ester/diacylglyce	no	no	0.204	0.050	0.296	5e-07

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 190/486 (39%), Gaps = 82/486 (16%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
            +L+ + L+   +L   + +G  DPY + T   + R SS+      P W E F F     
Sbjct: 534 GWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQWNEIFEFDAMAD 593

Query: 73  PVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVC---LHIKT 125
           P  ++ V ++D+D  +   V LG   V  V S       VW  L     Q C   LH++ 
Sbjct: 594 PPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKLAQACQSKLHLRI 653

Query: 126 IKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVI 185
                    V+  Y     +    + K+      Q     Q +F L  +EF+   ++C +
Sbjct: 654 FLDHTGGGDVVRDYLN---KMEKEVGKKINVRSPQTNSAFQKLFGLPQEEFLINDFTCHL 710

Query: 186 ERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ---RSQHAFINPAITIIL- 241
           +R     GR+++SA  + F+++ F  + K      DI+EIQ    +  +  +P + + L 
Sbjct: 711 KRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMGSPIVVMTLR 770

Query: 242 -------RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKE 294
                  R+GA  H        +GR+++ F SF + N A + +    K     L  E+K 
Sbjct: 771 PNRGLDARIGAKTH------DEEGRLKFHFHSFVSFNVAQKTIMALWK--AKSLTPEQKV 822

Query: 295 KAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEE--VLVGI----YNDVFPCTA 348
           +A                    VEE     E  Q    EE  + +G+    +++VF  T 
Sbjct: 823 QA--------------------VEE-----ESEQKLQSEESGLFLGVDDVRFSEVFSLTL 857

Query: 349 E---QFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYP 405
                FF  LF             RK       Q ++   ++ +  +V  R       Y 
Sbjct: 858 PVPVSFFMELFGGG-------EVDRKAMERAGCQSYSCSPWESEKDDVYERQ-----TYY 905

Query: 406 RDT-------AMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSS 458
           RD         +T +Q   L P+K  ++ E V   H VP G YF +H R+ +E       
Sbjct: 906 RDKRISRYRGEVTSTQQKSLVPEKNGWLVEEVMTLHGVPLGDYFNLHLRYQMEESTSKPK 965

Query: 459 TIDIKV 464
           T  ++V
Sbjct: 966 TTYVRV 971

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 106/519 (20%), Positives = 203/519 (39%), Gaps = 61/519 (11%)

Query: 5    KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
            +G       +++ + L+   NL         DPY + TC  + R SS+   ++ P W E 
Sbjct: 530  QGVKANGKGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEV 589

Query: 65   FNFSVDELPVQII-VTIYDWDIIW-KSTVLGSVIV-----TVESEGQTGAVWYTLDSPSG 117
              F   E P  ++ V ++D+D  + +   LG   +     T +             + + 
Sbjct: 590  IEFDAMEEPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQAS 649

Query: 118  QVCLHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEF 176
            Q  L ++      N    M  Y     +     L+ + P    QK    Q +F L  +EF
Sbjct: 650  QSKLQLRIFLENKNGVETMKDYLSKVEKEVGKKLNIRSP----QKNSAFQKLFGLPHEEF 705

Query: 177  VELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--- 233
            +   Y+C ++R     G++++SA  + F+SN F  + K      DID+IQ     F    
Sbjct: 706  LLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLG 765

Query: 234  NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEA 290
            +P + IIL+   G    HG       +GR+ + F SF + +   R +    K     ++ 
Sbjct: 766  SPLLLIILKKNRGLDAKHGAKS-QDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVD- 823

Query: 291  EKKEKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQ 350
                                  +A+IVEE     +   PF+  E  V + +D       +
Sbjct: 824  ---------------------HRAQIVEE---DQDVADPFLLPEA-VTVVSDADALMMSK 858

Query: 351  FFTLLFSDDSKFTNEYRAARKDSNLVMGQ----WHAADEYDGQVREVAFRSLC---KSPI 403
             +T     D +   +     +    +M +     +A+  ++ +   V  R L       +
Sbjct: 859  VYTCDLPCDVELVMKIFGGGELERKIMEKSGCLSYASTTWESKKPGVYERRLSYKYNHYV 918

Query: 404  YPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK 463
                  +T +Q    +P+ + ++   +   HDVPFG +F +H R+ ++      + +D K
Sbjct: 919  SVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHFRVHIRYEVK-----KAGVDCK 973

Query: 464  VVSAGAHFK-KWC-VIQF--KIKTGAVNKYKKEVELMLE 498
                  + K +W   I+F  +I    + K++   +++ +
Sbjct: 974  TSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFD 1012

Arabidopsis thaliana (taxid: 3702)

>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 33/155 (21%)

Query: 136 MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLP--DEFVELSYSCVIERSFLYHG 193
           ++GYA AN++R     +               IF +LP  D  ++  Y C ++R    HG
Sbjct: 185 LSGYAFANSKRNRDFHR---------------IFKVLPPEDHLID-DYGCALQRDIFLHG 228

Query: 194 RMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPL 253
           RMY+S  HICF+S+ F     ++IP+ +I  +++   A + P    I  + A        
Sbjct: 229 RMYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHA-------- 280

Query: 254 GSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTML 288
                  RY FASF +R+   + +    KN H  L
Sbjct: 281 -------RYIFASFISRDTTYQLIIAIWKNTHPFL 308

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 15  LIKLELLAAKNLIGAN------LNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           +++L L+ A++LI  +      + G SDPYA++  G++   S  +  +  P WGE + F 
Sbjct: 349 VLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFV 408

Query: 69  VDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL-DSPSGQVCLHIK 124
           V E+P Q + V +YD D   K   LGS+++ +E   Q   V  W+ L D PSG V L ++
Sbjct: 409 VHEVPGQDLEVDLYDEDPD-KDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLE 467

Query: 125 TIKLPVNASRVMNGYAG 141
            + L   + ++     G
Sbjct: 468 WLSLLPKSEKLSEAKGG 484

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NG SDP+  +      + +S+V  S YP W E F+F +++ 
Sbjct: 132 ASRLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTL 112
             + ++V  +DWD++ ++  LG V V V+     Q    W+ L
Sbjct: 192 ASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRL 234

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 678 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 737

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 738 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 797

Query: 119 VCLHI 123
           + LHI
Sbjct: 798 IRLHI 802

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome.

Homo sapiens (taxid: 9606)

>sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 687 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 746

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 747 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 806

Query: 119 VCLHI 123
           + LHI
Sbjct: 807 IRLHI 811

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Mus musculus (taxid: 10090)

>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 16   IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
            I L +L A+ LI  +  G SDPY     G  KR +  +     P+W E+F+F       +
Sbjct: 1159 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDR 1218

Query: 76   IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
            I V ++D D   KS +           LG  ++ V +      VWY L+      + SG 
Sbjct: 1219 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGA 1278

Query: 119  VCLHI 123
            + LHI
Sbjct: 1279 IRLHI 1283

May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	527
224121784	590	predicted protein [Populus trichocarpa]	0.990	0.884	0.800	0.0
359478193	588	PREDICTED: C2 and GRAM domain-containing	0.981	0.879	0.792	0.0
356519666	585	PREDICTED: C2 and GRAM domain-containing	0.984	0.887	0.774	0.0
356500100	584	PREDICTED: C2 and GRAM domain-containing	0.979	0.883	0.773	0.0
357475565	582	GRAM domain-containing protein [Medicago	0.981	0.888	0.760	0.0
449468844	598	PREDICTED: C2 and GRAM domain-containing	0.971	0.856	0.735	0.0
22331873	594	C2 domain and GRAM domain-containing pro	0.946	0.840	0.738	0.0
449484724	598	PREDICTED: LOW QUALITY PROTEIN: C2 and G	0.971	0.856	0.735	0.0
255582207	532	conserved hypothetical protein [Ricinus	0.834	0.827	0.855	0.0
297820804	586	C2 domain-containing protein [Arabidopsi	0.914	0.822	0.745	0.0

>gi|224121784|ref|XP_002330652.1| predicted protein [Populus trichocarpa] gi|222872256|gb|EEF09387.1| predicted protein [Populus trichocarpa]

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/526 (80%), Positives = 453/526 (86%), Gaps = 4/526 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGD Q NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 66  MGQLKGDSQANSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 125

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGA WYTLDSPSGQVC
Sbjct: 126 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAEWYTLDSPSGQVC 185

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIK+P N++R +NGYAGAN RRR S DKQGPTVVHQKPGPLQTIF+LLPDE VE S
Sbjct: 186 LHIKTIKVPANSARAVNGYAGANPRRRISSDKQGPTVVHQKPGPLQTIFSLLPDEVVEHS 245

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAW+ICFHSN FS+QMKV+IP GDIDEI+RSQHAFINPA+TII
Sbjct: 246 YSCALERSFLYHGRMYVSAWNICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAVTII 305

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKNY TMLEAEKKE+AESAL
Sbjct: 306 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRGLQRAAKNYRTMLEAEKKERAESAL 365

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 360
           RAHSSSI    RQA I E+ V K  K Q FIKEEVLVGIYND+FPCTAEQFF +   D S
Sbjct: 366 RAHSSSIRSGTRQANIPEDVVQKAGKLQAFIKEEVLVGIYNDLFPCTAEQFFNICLKDGS 425

Query: 361 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420
            F NEYR+ RKDSNLVMGQWHAADEYDGQVRE+ FRSLC SP+ P DTA+TE QH VLSP
Sbjct: 426 TFINEYRSVRKDSNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAVTEWQHFVLSP 485

Query: 421 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFK 480
           DKK  VFETVQQ HDVPFGSYFEIH RW LET  ENS  +DIK   AGAHFKKWCV+Q K
Sbjct: 486 DKKKLVFETVQQPHDVPFGSYFEIHCRWSLETNGENSCAMDIK---AGAHFKKWCVMQSK 542

Query: 481 IKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQ-SSTPSVTPD 525
           I++GA+N+YKKEV+LMLE AR+  K   S GET ++ SS+P +T D
Sbjct: 543 IRSGAINEYKKEVDLMLEMARASAKSHMSSGETTDKSSSSPIITQD 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478193|ref|XP_002273984.2| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera] gi|296084286|emb|CBI24674.3| unnamed protein product [Vitis vinifera]

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/521 (79%), Positives = 455/521 (87%), Gaps = 4/521 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQTNSAY+IKLELLAAKNLIGANLNG SDPYAIITCG EKRFSSMVPGSR PM
Sbjct: 65  MGQLKGDPQTNSAYVIKLELLAAKNLIGANLNGMSDPYAIITCGEEKRFSSMVPGSRNPM 124

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVD+LPV+I VTIYDWDIIWKST+LGSV V VE+EGQTGAVWY+LDS SGQVC
Sbjct: 125 WGEEFNFSVDDLPVKINVTIYDWDIIWKSTILGSVTVPVETEGQTGAVWYSLDSTSGQVC 184

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKLPVN+SRV+NGY+GAN RRR S DKQGPT+VHQKPGPLQTIFNL PDE VE S
Sbjct: 185 LHIKTIKLPVNSSRVLNGYSGANTRRRMSSDKQGPTLVHQKPGPLQTIFNLHPDEVVEHS 244

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVS WHICFHSN FS+QMKVIIP  DIDEI+RSQHAFINPAITII
Sbjct: 245 YSCALERSFLYHGRMYVSGWHICFHSNVFSKQMKVIIPFQDIDEIKRSQHAFINPAITII 304

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKN+HTMLEAEKKE AES L
Sbjct: 305 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRTLQRFAKNFHTMLEAEKKENAESEL 364

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 360
           RAHSSSI G R QAKI E+++    + QPF+KEE L+ IYND FPCTAEQFF +L  DDS
Sbjct: 365 RAHSSSIKG-RSQAKISEDSLPTAIEFQPFVKEEALISIYNDAFPCTAEQFFNILLHDDS 423

Query: 361 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420
            + NEYR ARKD+NLV+GQWHA DEYDGQVRE+ FRSLC SP+ P DTAMTE QHAV+SP
Sbjct: 424 NYINEYRLARKDANLVVGQWHATDEYDGQVREITFRSLCTSPMCPPDTAMTEYQHAVVSP 483

Query: 421 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFK 480
           DKK+ VFETVQQAHDVPFGS+FE+H +W LET +E+S T++IK   AGAHFKKWCV+Q K
Sbjct: 484 DKKVLVFETVQQAHDVPFGSHFEVHCKWRLETNSESSCTMEIK---AGAHFKKWCVMQSK 540

Query: 481 IKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 521
           I++GA+N+YKKEVE MLE ARSYIK  TSGGE  +  S+ S
Sbjct: 541 IRSGAINEYKKEVETMLEVARSYIKSKTSGGEIEDAPSSSS 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519666|ref|XP_003528491.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/524 (77%), Positives = 444/524 (84%), Gaps = 5/524 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q + AYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 63  MGQSKVDSQASLAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 122

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 123 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 182

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           LHIKTIKL  NASR+ NGY GAN RRR   L+ QGPTVVHQKPGPLQTIF L PDE V+ 
Sbjct: 183 LHIKTIKLSGNASRI-NGYGGANPRRRMPPLESQGPTVVHQKPGPLQTIFGLHPDEVVDH 241

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 242 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 301

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 299
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHALR LQR AKN+H MLEAEKKE AES 
Sbjct: 302 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHALRNLQRAAKNFHEMLEAEKKENAESE 361

Query: 300 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDD 359
           LRAHSSS+ G++   K  EE++ K  + QPF+KEE LVGIYN+VFPCTAEQFF LL +D 
Sbjct: 362 LRAHSSSVRGNKILDKAPEESMPKTGRLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDG 421

Query: 360 SKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419
           S FT++YR+ RKD+NLVMGQWH ADEYDGQVRE+ FRSLC SP+ P DTAMTE QH VLS
Sbjct: 422 SNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLS 481

Query: 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQF 479
            DKK  VFETVQQAHDVPFGSYFE+H +W LETI E S T+DIKV   GAHFKKWCV+Q 
Sbjct: 482 LDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETINEISCTLDIKV---GAHFKKWCVMQS 538

Query: 480 KIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVT 523
           KIK+GAVN+YKKEV++ML+ ARSYIK  T   E +  SS P+ T
Sbjct: 539 KIKSGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPPAAT 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500100|ref|XP_003518872.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/521 (77%), Positives = 442/521 (84%), Gaps = 5/521 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q +SAYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 61  MGQSKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 120

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 121 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 180

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           L IKTIKL  NASR+ NGY GAN RRR   L++Q PTVVHQKPGPLQTIF+L PDE V+ 
Sbjct: 181 LLIKTIKLSGNASRI-NGYGGANPRRRMPPLERQWPTVVHQKPGPLQTIFDLHPDEVVDH 239

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 240 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 299

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 299
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHA R LQR AKN+H MLEAEKKE AES 
Sbjct: 300 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESE 359

Query: 300 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDD 359
           LRAHSSS+ G++   K  EE++ K  K QPF+KEE LVGIYN+VFPCTAEQFF LL +D 
Sbjct: 360 LRAHSSSVRGNKILDKAPEESMPKTGKLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDG 419

Query: 360 SKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419
           S FT++YR+ RKD+NL+MGQWH ADEYDGQVRE+ FRSLC SP+ P DTAMTE QH VLS
Sbjct: 420 SNFTSKYRSVRKDTNLLMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLS 479

Query: 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQF 479
           PDK   VFETVQQAHDVPFGSYFE+H +W LETI E S T+DIKV   GAHFKKWCV+Q 
Sbjct: 480 PDKTNLVFETVQQAHDVPFGSYFEVHCKWSLETINETSCTLDIKV---GAHFKKWCVMQS 536

Query: 480 KIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTP 520
           KIK+GAVN+YKKEV++ML+ ARSYIK  T   E +  SS P
Sbjct: 537 KIKSGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPP 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475565|ref|XP_003608068.1| GRAM domain-containing protein [Medicago truncatula] gi|355509123|gb|AES90265.1| GRAM domain-containing protein [Medicago truncatula]

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/521 (76%), Positives = 437/521 (83%), Gaps = 4/521 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD Q  SAYLIKLELLAAKNLI ANLNGTSDPY IITCG+EKRFSSMVPGSR PMWG
Sbjct: 63  QSRGDSQAGSAYLIKLELLAAKNLIAANLNGTSDPYTIITCGNEKRFSSMVPGSRNPMWG 122

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVCLH
Sbjct: 123 EEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLH 182

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           IKT K+  N++R+ NGY GAN RRR  L+KQ PTVVHQKPGPLQTIF L PDE V+ SYS
Sbjct: 183 IKTEKMSANSARI-NGYGGANTRRRIPLEKQEPTVVHQKPGPLQTIFELHPDEVVDHSYS 241

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVS WHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITIILR
Sbjct: 242 CALERSFLYHGRMYVSTWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILR 301

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLGSPDGRVRYKFASFWNRNHA+R LQR  KN+  MLE EKKE AES LRA
Sbjct: 302 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKKENAESELRA 361

Query: 303 HSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKF 362
           HSSS+  S    K+ E ++ K  KRQ FIKEE LVGIYNDVFPCTAEQFF LL  DDSKF
Sbjct: 362 HSSSVRRSNIMDKVPETSMPKAGKRQTFIKEEALVGIYNDVFPCTAEQFFNLLLKDDSKF 421

Query: 363 TNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDK 422
           T++YR+ARKD+NLVMGQWH A+EYDGQVRE+ FRSLC SP+ P DTA+TE QH VLS DK
Sbjct: 422 TSKYRSARKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAITEWQHVVLSSDK 481

Query: 423 KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIK 482
           K  VFETVQQAHDVP GS FE+H +W LET  E+S T+DI+V   GAHFKKWCV+Q KIK
Sbjct: 482 KNLVFETVQQAHDVPLGSCFEVHCKWGLETTGESSCTLDIRV---GAHFKKWCVMQSKIK 538

Query: 483 TGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVT 523
           +GA+N+YKKEV++ML+ ARSYIK  TS  E +  SS P+ T
Sbjct: 539 SGAINEYKKEVDVMLDVARSYIKPHTSDDENDKASSPPAAT 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468844|ref|XP_004152131.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/515 (73%), Positives = 430/515 (83%), Gaps = 3/515 (0%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 306
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 307 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEY 366
           +  S  + KI  + + K +  Q F+KEEVL  I+N VFPC+ E+FF+ L SD S +T+ +
Sbjct: 382 VRVSETKEKIPADDLPKSKNTQAFLKEEVLTSIHNGVFPCSPERFFSTLLSDGSGYTSAF 441

Query: 367 RAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFV 426
            A RKD+NLVMGQWHAADEY+GQVRE+ +RSLC SP+ P DTAMTE QH VLS DKK  V
Sbjct: 442 VAKRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHVVLSEDKKKLV 501

Query: 427 FETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV 486
           FETVQ AHDVPFG+ FE+H RW LE  AE+SS++DIK   AG HFKKWC++Q KIK GA+
Sbjct: 502 FETVQNAHDVPFGANFELHCRWSLEKNAEDSSSVDIK---AGVHFKKWCLMQSKIKAGAM 558

Query: 487 NKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 521
            +YK+ V+L LE A  Y+   TSG ET+  +S PS
Sbjct: 559 LEYKRAVDLRLEVALEYMNSNTSGNETDKVASAPS 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331873|ref|NP_191525.2| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana] gi|17065130|gb|AAL32719.1| putative protein [Arabidopsis thaliana] gi|30725388|gb|AAP37716.1| At3g59660 [Arabidopsis thaliana] gi|332646431|gb|AEE79952.1| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana]

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/504 (73%), Positives = 422/504 (83%), Gaps = 5/504 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 70  HLRGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 129

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 130 EEFNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 189

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 190 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 248

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 249 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 308

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+A+SALRA
Sbjct: 309 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRA 368

Query: 303 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSK 361
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS 
Sbjct: 369 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDST 428

Query: 362 FTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 421
           +TNEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPD
Sbjct: 429 YTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPD 488

Query: 422 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKI 481
           KK+ VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+V   G HFKKWC++Q KI
Sbjct: 489 KKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRV---GVHFKKWCLMQSKI 545

Query: 482 KTGAVNKYKKEVELMLETARSYIK 505
           K GA+++YKKEVE+MLE A SY+K
Sbjct: 546 KAGAIDEYKKEVEVMLEVALSYLK 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484724|ref|XP_004156962.1| PREDICTED: LOW QUALITY PROTEIN: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/515 (73%), Positives = 429/515 (83%), Gaps = 3/515 (0%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 306
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 307 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEY 366
           +  S  + KI  + + K    Q F+KEEVL  I+N VFPC+ E+FF+ L SD S +T+ +
Sbjct: 382 VRVSETKEKIPADDLPKSXNTQAFLKEEVLTSIHNGVFPCSPERFFSTLLSDGSGYTSAF 441

Query: 367 RAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFV 426
            A RKD+NLVMGQWHAADEY+GQVRE+ +RSLC SP+ P DTAMTE QH VLS DKK  V
Sbjct: 442 VAKRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHVVLSEDKKKLV 501

Query: 427 FETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV 486
           FETVQ AHDVPFG+ FE+H RW LE  AE+SS++DIK   AG HFKKWC++Q KIK GA+
Sbjct: 502 FETVQNAHDVPFGANFELHCRWSLEKNAEDSSSVDIK---AGVHFKKWCLMQSKIKAGAM 558

Query: 487 NKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 521
            +YK+ V+L LE A  Y+   TSG ET+  +S PS
Sbjct: 559 LEYKRAVDLRLEVALEYMNSNTSGNETDKVASAPS 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582207|ref|XP_002531896.1| conserved hypothetical protein [Ricinus communis] gi|223528463|gb|EEF30495.1| conserved hypothetical protein [Ricinus communis]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/443 (85%), Positives = 397/443 (89%), Gaps = 3/443 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQ NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 75  MGQLKGDPQGNSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 134

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKSTVLGSV V VESEGQTGAVWYTLDSPSGQVC
Sbjct: 135 WGEEFNFSVDELPVQIQVTIYDWDIIWKSTVLGSVTVPVESEGQTGAVWYTLDSPSGQVC 194

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKL VN+SR MNGYAGA+ARRR SLD QGPTVVHQKPGPLQTIFNL  DE VE S
Sbjct: 195 LHIKTIKLSVNSSRAMNGYAGASARRRISLDTQGPTVVHQKPGPLQTIFNLPADEIVEHS 254

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKVIIP+GDIDEI+RSQHAFINPAITII
Sbjct: 255 YSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPLGDIDEIRRSQHAFINPAITII 314

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AK YH MLE +KKE+AESAL
Sbjct: 315 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRALQRAAKTYHDMLEVQKKERAESAL 374

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 360
           RAHSSSI G     KI ++ V K EK QPFIKEEVLVGI+ND FPCTAEQFF LL +D S
Sbjct: 375 RAHSSSIRGG---IKIPDDIVPKVEKHQPFIKEEVLVGIHNDAFPCTAEQFFNLLLNDGS 431

Query: 361 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420
           KFTNEYRA RKD+NL+MGQWHAADEYDGQVRE+ FRSLC SP+ P DTAMTE QHAV SP
Sbjct: 432 KFTNEYRAVRKDTNLIMGQWHAADEYDGQVREITFRSLCHSPMCPPDTAMTEYQHAVFSP 491

Query: 421 DKKIFVFETVQQAHDVPFGSYFE 443
           D+KI VFETVQ AHDVPFGSYFE
Sbjct: 492 DRKILVFETVQNAHDVPFGSYFE 514

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820804|ref|XP_002878285.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324123|gb|EFH54544.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/487 (74%), Positives = 409/487 (83%), Gaps = 5/487 (1%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD QTN+AY+IK+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 71  QMRGDTQTNAAYIIKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 130

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELPV+I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 131 EEFNFPTDELPVKISVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 190

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 191 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 249

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 250 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 309

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+AESALRA
Sbjct: 310 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAESALRA 369

Query: 303 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSK 361
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS 
Sbjct: 370 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDST 429

Query: 362 FTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 421
           +TNEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPD
Sbjct: 430 YTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPD 489

Query: 422 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKI 481
           KK+ VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+V   G HFKKWC++Q KI
Sbjct: 490 KKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRV---GVHFKKWCLMQSKI 546

Query: 482 KTGAVNK 488
           K GA+++
Sbjct: 547 KAGAIDE 553

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	527
TAIR|locus:2097578	594	AT3G59660 "AT3G59660" [Arabido	0.981	0.870	0.688	2.3e-197
UNIPROTKB|Q5Z6I4	1037	OSJNBa0055N24.36 "Putative Osn	0.863	0.438	0.223	5e-19
DICTYBASE|DDB_G0267942	898	DDB_G0267942 "GRAM domain-cont	0.388	0.228	0.247	5.5e-17
UNIPROTKB|Q66VB0	1086	Os06g0607900 "Os06g0607900 pro	0.495	0.240	0.266	8.4e-16
TAIR|locus:2157707	1027	AT5G50170 "AT5G50170" [Arabido	0.203	0.104	0.315	4.6e-15
TAIR|locus:2205625	598	VAD1 "VASCULAR ASSOCIATED DEAT	0.203	0.178	0.325	9.5e-14
UNIPROTKB|Q3KR37	738	GRAMD1B "GRAM domain-containin	0.301	0.215	0.239	2.6e-13
RGD|1305443	733	Gramd1b "GRAM domain containin	0.328	0.236	0.245	3.3e-13
MGI|MGI:1925037	738	Gramd1b "GRAM domain containin	0.301	0.215	0.239	3.4e-13
UNIPROTKB|Q8IYS0	662	GRAMD1C "GRAM domain-containin	0.364	0.290	0.239	9.5e-12

TAIR|locus:2097578 AT3G59660 "AT3G59660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1911 (677.8 bits), Expect = 2.3e-197, P = 2.3e-197
 Identities = 361/524 (68%), Positives = 414/524 (79%)

Query:     5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWGEE
Sbjct:    72 RGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWGEE 131

Query:    65 FNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
             FNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+I 
Sbjct:   132 FNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLNIN 191

Query:   125 TIKLPVNASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCV 184
              IKLPVNA R +            +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYSC 
Sbjct:   192 AIKLPVNAPRAVTGYAGAGRRRV-TLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCA 250

Query:   185 IERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMG 244
             +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILRMG
Sbjct:   251 LERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILRMG 310

Query:   245 AGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLXXXXXXXXXXXLRAHS 304
             AGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH ML           LRAHS
Sbjct:   311 AGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRAHS 370

Query:   305 SSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFT 363
             SS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS +T
Sbjct:   371 SSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDSTYT 430

Query:   364 NEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKK 423
             NEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPDKK
Sbjct:   431 NEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPDKK 490

Query:   424 IFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKT 483
             + VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+V   G HFKKWC++Q KIK 
Sbjct:   491 VLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRV---GVHFKKWCLMQSKIKA 547

Query:   484 GAVNKYKKEVELMLETARSYIKICTSGGETNN--QSSTPSVTPD 525
             GA+++YKKEVE+MLE A SY+K  +S     +  +S+  S TP+
Sbjct:   548 GAIDEYKKEVEVMLEVALSYLKSHSSSSSHGDIDKSALSSPTPE 591

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 261 (96.9 bits), Expect = 5.0e-19, P = 5.0e-19
 Identities = 112/502 (22%), Positives = 204/502 (40%)

Query:    12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE 71
             + +L+ + L+   NL     +G SDPY + TC  + + SS+   +  P W E F F   E
Sbjct:   554 NGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTSSIKFHTLEPRWNEIFEFDAME 613

Query:    72 LPVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIK 127
              P  ++ + +YD+D  +     LG   V  ++S   +   +W  L     Q C     ++
Sbjct:   614 DPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELSDIWIPLKGKLAQACQSKLHLR 673

Query:   128 LPVNASRVMXXXXXXXXXXXXSLDKQ-GPTVVHQKP---GPLQTIFNLLPDEFVELSYSC 183
             + +N SR               ++K+ G  +  + P      Q IF+L P+EF+   ++C
Sbjct:   674 IILNNSR----GTEVMKDYLDKMEKEVGKKIAVRSPHTNSAFQKIFSLPPEEFLINDFTC 729

Query:   184 VIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRM 243
              ++R  L  GR+++S   I F++N F  + K      DI++IQ      + PA T+    
Sbjct:   730 HLKRKMLTQGRLFLSPRIIGFYTNLFGHKTKFFFLWEDIEDIQ------VMPA-TLY--- 779

Query:   244 GAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAK-NYHTMLXXXXXXXXXXXLRA 302
                      +GSP   +        +  H  +QL    +  +H              +  
Sbjct:   780 --------SMGSPSLLIILHKGRGMDARHGAKQLDNEGRLKFHFQSFVSFNVAHKTIMAL 831

Query:   303 HSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGI----YNDVFPCTAEQFFTLLFSD 358
               +      ++ ++VEE     + +    + +  +GI     ++VF  T     + L S 
Sbjct:   832 WKARSLTPEQKVQLVEEESEMKDLQNN--ESDSFLGIEDAKMSEVFSSTKPFDVSTLMSI 889

Query:   359 DSKFTNEYRAARKDSNLV--MGQWHA--ADEYDGQVREVAFRSLCKSPIYPRDTAMTESQ 414
                   E++   K   +   +  W +  AD Y  Q+     + L +         M+  Q
Sbjct:   890 FEGGPLEHQVMEKIGCMEYSVSPWESVRADAYQRQIHYKFDKRLARH----EGEVMSTQQ 945

Query:   415 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKW 474
              + L PDK  ++ E V     +P G YF +H R+ LE I+      +++V S G  + K 
Sbjct:   946 KSPL-PDKNGWLVEEVMTLEGIPVGEYFNLHMRYQLEQISSKPKACNVQV-SIGIAWLKS 1003

Query:   475 CVIQFKIKTGAVNKYKKEVELM 496
             C  + KI    ++     ++ M
Sbjct:  1004 CKNRKKIAQEVLSSASSRLKKM 1025

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

DICTYBASE|DDB_G0267942 DDB_G0267942 "GRAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 182 (69.1 bits), Expect = 5.5e-17, Sum P(3) = 5.5e-17
 Identities = 53/214 (24%), Positives = 101/214 (47%)

Query:   317 VEETVTKPEKRQPFIKEEV--LVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSN 374
             VE+ ++K ++ Q  ++ +      I +D F  +   F+  L+SD   F + Y   R D N
Sbjct:   473 VEQYLSKDQQPQSILESQSSDFQEILSDNFNVSVVNFYRALYSDRCNFVHSYHVKRGDMN 532

Query:   375 LVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAH 434
             + +  W   + + G +REV + +   SPI P  T + E+Q   L+  K I   +T+    
Sbjct:   533 VNVKPWTFRERF-GTIREVEYVAPVSSPIGPDKTRIQETQRYQLTRKKLIVETDTIML-- 589

Query:   435 DVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE 494
             D+P+G +F I  +W +   ++++  + I +      F K    + KI+T  V + K   +
Sbjct:   590 DIPYGDHFRIEAKWEVTETSQDTCRLSISLT---VRFVKKTWFKSKIETTTVKETKTSFD 646

Query:   495 LMLETARSYI-KICTSGGETNNQSSTPSVTPDCN 527
               ++ A+  + K+       +  SST + T + N
Sbjct:   647 KWVQLAKVEVQKMLQVKPLPSASSSTATNTTNNN 680

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q66VB0 Os06g0607900 "Os06g0607900 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 232 (86.7 bits), Expect = 8.4e-16, P = 8.4e-16
 Identities = 72/270 (26%), Positives = 126/270 (46%)

Query:    14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF-SVDEL 72
             +L+ + L+    +  +N     D YA+ TC ++++ SS+   +  P W E + F ++D+ 
Sbjct:   604 WLMTVALIEGTGITNSNSKELFDMYAVFTCNAKRKTSSVKFQTSEPKWNEIYEFDAMDDP 663

Query:    73 PVQIIVTIYDWDIIWKSTVLGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIKLPV 130
             P ++ V I+D +  +  + +G   V  ++S       VW  L+    Q       +++ +
Sbjct:   664 PSRMDVAIHDANGPFDQSPIGHAEVNFLKSNLSDLTDVWLPLEGKCDQTSNPKIHLRIFL 723

Query:   131 NASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFL 190
             N SR               + K+      Q     + +FNL P+EF+   ++C ++R   
Sbjct:   724 NNSRGTEVVMNYLAKMRKEVGKKINLRSAQTNAAFRKLFNLPPEEFLIDDFTCHLKRKMP 783

Query:   191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--NPAITIILRMGAG-- 246
               GR++ S   I F+SN F  + K      D+D+IQ         +P++TIILR G G  
Sbjct:   784 LQGRLFFSPRIIGFYSNIFGHKTKFFFLWDDVDDIQVIPPTLSIGSPSLTIILRKGRGLE 843

Query:   247 -GHGVPPLGSPDGRVRYKFASFWNRNHALR 275
               HG      P+GR++Y F SF + N A R
Sbjct:   844 AKHGAKGT-DPNGRLKYYFQSFVSFNDAHR 872

GO:0010152 "pollen maturation" evidence=IMP

TAIR|locus:2157707 AT5G50170 "AT5G50170" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 4.6e-15, Sum P(3) = 4.6e-15
 Identities = 36/114 (31%), Positives = 56/114 (49%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             QK    Q +F L  +EF+   Y+C ++R     G++++SA  + F+SN F  + K     
Sbjct:   689 QKNSAFQKLFGLPHEEFLLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLW 748

Query:   220 GDIDEIQRSQHAFIN---PAITIILRMGAG---GHGVPPLGSPDGRVRYKFASF 267
              DID+IQ     F +   P + IIL+   G    HG       +GR+ + F SF
Sbjct:   749 EDIDDIQVLPPTFASLGSPLLLIILKKNRGLDAKHGAKSQDD-EGRLSFYFQSF 801

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
 Identities = 41/126 (32%), Positives = 62/126 (49%)

Query:   151 DKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFS 210
             D Q   +   K    + +F L  DE +   ++C  + S L  G MY+   +ICF+SN F 
Sbjct:    60 DNQSEVI--SKSEEYRQLFRLPADEILVQDFNCACQESILMQGHMYLFIHYICFYSNIFG 117

Query:   211 RQMKVIIPIGDIDEIQRSQHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 269
              + K IIP  +I  ++R++ A I P AI I+    AGG             +Y FASF +
Sbjct:   118 YETKKIIPFAEISCVKRAKTAGIFPNAIEIL----AGGK------------KYFFASFLS 161

Query:   270 RNHALR 275
             R+ A +
Sbjct:   162 RDEAFK 167

GO:0005634 "nucleus" evidence=ISM

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q3KR37 GRAMD1B "GRAM domain-containing protein 1B" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
 Identities = 41/171 (23%), Positives = 82/171 (47%)

Query:   341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 400
             N+VF  + ++ + LLF++ S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   378 NEVFNFSVDKLYDLLFTN-SPFQRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 435

Query:   401 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 459
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   436 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 495

Query:   460 IDIKVVSAGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYI 504
             +    VS    ++K  W +++  I+      +  Y + +E  L +T  +Y+
Sbjct:   496 LR---VSTELRYRKQPWGLVKTFIEKNFWSGLEDYFRHLESELAKTESTYL 543

GO:0016021 "integral to membrane" evidence=IEA

RGD|1305443 Gramd1b "GRAM domain containing 1B" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 46/187 (24%), Positives = 86/187 (45%)

Query:   341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 400
             N+VF  + ++ + LLF+  S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   373 NEVFNFSVDKLYDLLFTT-SPFLRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 430

Query:   401 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 459
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   431 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 490

Query:   460 IDIKVVSAGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYIKIC--TSGG 511
             +    VS    ++K  W  ++  I+      +  Y + +E  L +T  +Y+      S  
Sbjct:   491 LR---VSTELRYRKQPWGFVKTFIEKNFWSGLEDYFRHLETELTKTESTYLAEIHRQSPK 547

Query:   512 ETNNQSS 518
             E  N+SS
Sbjct:   548 EKTNKSS 554

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1925037 Gramd1b "GRAM domain containing 1B" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
 Identities = 41/171 (23%), Positives = 81/171 (47%)

Query:   341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 400
             N+VF  + ++ + LLF++ S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   378 NEVFNFSVDKLYDLLFTN-SPFLRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 435

Query:   401 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 459
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   436 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 495

Query:   460 IDIKVVSAGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYI 504
             +    VS    ++K  W  ++  I+      +  Y + +E  L +T  +Y+
Sbjct:   496 LR---VSTELRYRKQPWGFVKTFIEKNFWSGLEDYFRHLETELTKTESTYL 543

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8IYS0 GRAMD1C "GRAM domain-containing protein 1C" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
 Identities = 50/209 (23%), Positives = 103/209 (49%)

Query:   301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVG--IYNDVFPCTAEQFFTLLFSD 358
             R  S S+  ++ +   ++++ T     +  + E+ L G    N +F  +A++ F LLF+ 
Sbjct:   290 RVPSKSLDLNKNEYLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFTS 349

Query:   359 DSKFTNEYRAARKDSNLVMGQWHAADEYDG-QVREVAFRSLCKSPIYPRDTAMTESQHAV 417
              S+F  ++ ++R   ++V   W A  E  G Q+R + +  +  SP+  + TA TE Q   
Sbjct:   350 -SRFMQKFASSRNIIDVVSTPWTA--ELGGDQLRTMTYTIVLNSPLTGKCTAATEKQTLY 406

Query:   418 L-SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK--W 474
               S + + ++ ++    HDVP+  YF    R+ +  I  +     ++V S    ++K  W
Sbjct:   407 KESREARFYLVDSEVLTHDVPYHDYFYTVNRYCI--IRSSKQKCRLRV-STDLKYRKQPW 463

Query:   475 CVIQFKIKTGA---VNKYKKEVE--LMLE 498
              +++  I+  +   +  Y K++E  L++E
Sbjct:   464 GLVKSLIEKNSWSSLEDYFKQLESDLLIE 492

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	527
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	7e-75
cd00030	102	cd00030, C2, C2 domain	5e-21
cd13220	111	cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr	1e-18
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	2e-16
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-15
pfam00168	85	pfam00168, C2, C2 domain	8e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-14
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-12
pfam02893	60	pfam02893, GRAM, GRAM domain	6e-12
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-10
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-09
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-09
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-08
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	4e-08
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	8e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-07
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	3e-07
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-07
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	1e-06
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-06
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-05
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	3e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-05
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	5e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-05
cd13349	135	cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe	1e-04
cd13217	100	cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and	1e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	2e-04
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	6e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	7e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	0.001
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	0.001
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.001
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.002
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.002
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	0.002
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	0.003
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.003
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	0.004
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.004
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.004

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  233 bits (597), Expect = 7e-75
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 144 ARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHIC 203
           ++    + K+      QK    Q +F L P+EF+   ++C ++R F   GR+++SA  I 
Sbjct: 1   SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60

Query: 204 FHSNAFSRQMKVIIPIGDIDEIQRSQHAF--INPAITIILRMG---AGGHGVPPLGSPDG 258
           F+SN F  + K      DI+EIQ S  +    +P+I IILR G      HG  P   P+G
Sbjct: 61  FYSNLFGHKTKFFFLWEDIEEIQVSPPSLSVGSPSIVIILRKGRGLDARHGAKP-QDPEG 119

Query: 259 RVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           R+++ F SF + NHA R +    KN     E +K+   ES L
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIVEESEL 161

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 87.5 bits (217), Expect = 5e-21
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           +++ ++ A+NL   +LNG SDPY  ++ G +++F + +V  +  P+W E F F V +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 75  Q-IIVTIYDWDIIWKSTVLGSVIVTVES---EGQTGAVWYTL 112
             + V ++D D   K   LG V + +      G+ G +W  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 17/118 (14%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
            +L  DE +   YSC ++R  L  GR+Y+S  HICF+SN F  + K++IP  DI  I++ 
Sbjct: 4   KSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSIEKK 63

Query: 229 QHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYH 285
           + A + P AI I                     +Y FASF +R+     + R   N  
Sbjct: 64  KTAGLFPNAIQIETLTE----------------KYFFASFLSRDSTFDLITRVWSNAL 105

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
            L  +E +   YSC + R+    GR+Y+S + +CF SN   +  KV+IP+ DI  I++S 
Sbjct: 1   KLPEEEKLIADYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIEKST 60

Length = 60

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           +L A++L   + NGTSDP+  +    +   +S+V  S YP W E F F + E     + V
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
            ++DWD++ K+  LG V+ ++++  Q      W+ L
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDEL 72
          +++ +++AKNL   +LNG SDPY  ++ G +K+    + +V  +  P+W E F F V   
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 73 PVQ-IIVTIYDWDIIWKSTVLGSVI 96
           +  + + +YD+D   K   +G V 
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 67.9 bits (166), Expect = 4e-14
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDE 71
            + +++++A+NL   +  G SDPY  ++   + +    + +V  +  P+W E F F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 72  LPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES 101
             +  + + +YD D   +   +G V + +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 13/122 (10%)

Query: 15  LIKLELLAAKNLIGANLN------GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           ++++ ++ A++L+  +        G SDPY I+  G++   S ++  +  P W E +   
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV 61

Query: 69  VDELP-VQIIVTIYDWDIIWKSTVLGSV---IVTVESEGQTGAVWYTL-DSPSGQVCLHI 123
           VDE+P  ++ + ++D D   K   LG +   + +VE +G     W  L D  SG++ L +
Sbjct: 62  VDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDE-WLPLEDVKSGRLHLKL 119

Query: 124 KT 125
           + 
Sbjct: 120 EW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 171 LLPDEFVELSYSCVIERSF-LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
           L P+E +   YSC ++R      GR+Y++   +CF S+ F     ++IP+ DI+ +++ +
Sbjct: 1   LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ LI  +  GTSDPY  +  G  K+ +  +P +  P+W E+F+F       +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS +           LG  I+ V +      VWY L+      + SG 
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGA 122

Query: 119 VCLHI 123
           + LHI
Sbjct: 123 IRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 16  IKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           +++ ++ AK+L   +    G SDPYAI++ G+++  +  +P +  P W     F +    
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 74  VQII-VTIYDWDIIWKSTVLGSV------IVTVESEGQTGAVWYTLDS 114
            Q++ + ++D D       LG        +      GQ+   W TL S
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDK-WITLKS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           + +++++A+NL  A+ NG SDP+       EK F +  +  +  P+W E F     E+PV
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESF-----EVPV 55

Query: 75  ------QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQT 105
                  + V +YDWD   K  +LGS  +    +E E  T
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETT 95

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           L+  KNL   + NG SDPY     G+EK  S +   +  P W E+F+  + +   QI+ +
Sbjct: 6   LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQVCLHI 123
            ++D D   K   +G   + +      QT ++   L+   G + L +
Sbjct: 66  EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 28/114 (24%)

Query: 21  LAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---- 72
           LA K+      NGT DP+A +T      ++ + + +   +  P + E F F +       
Sbjct: 11  LALKS------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64

Query: 73  ------------PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
                         ++ V ++   ++     LG V + ++   Q G+   WY L
Sbjct: 65  KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+K+ ++   NL   +   +SDPY ++T G++K  + ++  +  P+W EE   SV     
Sbjct: 3   LLKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
            + + ++D D   K   +G   + +E
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLE 87

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGS-RYPMWGEEFNFSVDELPVQ-- 75
            L++AK L   +  G  DPY II C +++R S +  G  R P W E+F F+V E P    
Sbjct: 6   LLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYPGWGG 64

Query: 76  ---IIVTIYDWDIIWKSTVLGSVIVTVE 100
              +I+ I D D       +G   + ++
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLK 92

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSE---KRFSSMVPGSRYPMWGEEFNFSV- 69
           + + +L A+NL  ++  G SDPY  ++   G +   K+ +S+  G+  P++ E F+F V 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
            ++L  V +++T+ D D + ++ V+G V++  +S G+    W   L SP   + 
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIA 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 17  KLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV-- 74
           +L +L AKNL      GT DPY  ++    +   +       P WGEEF F  D+ P   
Sbjct: 3   RLRILEAKNLP---SKGTRDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVF--DDPPPDV 57

Query: 75  ---QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS--PSGQVC--LHIK 124
               +     D     +  V+G V ++    GQ    W+ L    P  +V   + ++
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLR 114

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSS---MVPGSRYPMWGEEFNFSVDE 71
           L+++ ++ A+NL   + NG SDPY  I  G +K+ +     +P +  P++G+ F      
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLG-KKKINDRDNYIPNTLNPVFGKMFELEA-T 58

Query: 72  LPVQII--VTIYDWDIIWKSTVLGSVIVTVE 100
           LP   I  +++ D+D++    ++G  ++ +E
Sbjct: 59  LPGNSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
           F L   E +   Y   ++R    +G++Y+S  + CF S     + K+I+P+ DI+ +++ 
Sbjct: 7   FALPESEKLLAYYYAYLQRVLPVYGKLYISDNYFCFRSLLPGTRTKMILPLKDIENVEKE 66

Query: 229 Q-HAFINPAITIILRMGAGGH 248
           +   F    + I++R    GH
Sbjct: 67  KGFRFGYSGLVIVIR----GH 83

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWG 62
           P  N    I + ++ A+NL   ++NGTSDPY  +         EK+ + +   +  P++ 
Sbjct: 12  PTANR---ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFN 68

Query: 63  EEFNFSV--DEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
           E F F++  + L    +I+T+ D D + ++ ++G + +  +S G
Sbjct: 69  ESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP- 73
           +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F   E+P 
Sbjct: 21  ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF---EVPF 77

Query: 74  -----VQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
                V +IVT+ D+D I K+  +G V++   + G
Sbjct: 78  EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 14  YLIKLELLAAKNLIGANLNGTSDPYAIIT-CGSEKRFSS--MVPGSRYPMWGEEFNFSV- 69
           +L  + ++ A+NL   + NG SDPY  +     ++R +    +  +  P W EEF   V 
Sbjct: 1   HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60

Query: 70  DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLDSPSGQVCLHI 123
              P+ I  T++D   + K  + G   + ++      +G    +W  LD   G++ L +
Sbjct: 61  AGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-TQGRLLLRV 118

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
           + +A+ L   +  G +DPY II C  E   S +   +  P +  +  F   +    I + 
Sbjct: 9   VHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQ 68

Query: 80  IYDWDIIWKSTVLGSVIVTVE 100
           +++ +++     LG   ++ +
Sbjct: 69  VWNSNLL-CDEFLGQATLSAD 88

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 19/91 (20%)

Query: 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR---SQHAFINPAITIILRMGAGGHG 249
           G +Y++ + + F S       ++ +P+G I  +++   S     +  + I  +       
Sbjct: 19  GTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYGLEITCK------- 71

Query: 250 VPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280
                  D R   +FA F   +H+ R +   
Sbjct: 72  -------DMRN-LRFA-FKQEDHSRRDIFEL 93

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 10   TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFS 68
             NS YL  + L + +NL  ++ NG SDP+  +    +  + + +V  +  P+W EEF   
Sbjct: 1037 ENSGYL-TIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIE 1095

Query: 69   VD-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101
            V   +   + + + DWD   K+ +LG+  + +  
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 169 FNLLPDEFVELSYSCVIERSFL-YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227
           FN    E +   YSC   +  +   G +Y+S  H+CF+S    +++K++IP  ++ +++R
Sbjct: 19  FNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVEVQKLER 78

Query: 228 SQHAFINPAITIILR 242
           + + F+   I +  +
Sbjct: 79  TSNVFMTDTIRVTTQ 93

TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135

>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF 232
            +E V        +      G +Y+S  H+CF+S     + K++I   ++ +I++S    
Sbjct: 1   EEELVTSYSCSYWKGKVPRQGWLYLSLNHLCFYSFLLGSESKLVIRWTELTDIEKS---- 56

Query: 233 INPAIT 238
            N  I 
Sbjct: 57  GNTTIK 62

TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 100

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 21 LAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
          L A+ L+    +GT+D Y II  G EK  +S+   +  P+W EE +F   ELP
Sbjct: 6  LQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSF---ELP 55

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 18/91 (19%)

Query: 11  NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR--------YPMWG 62
            S   +++E+L A+NL+  + NG+SDP+  +       F   VP  +        +P++ 
Sbjct: 13  ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF-PDVPTPKTQVKKKTLFPLFD 71

Query: 63  EEFNFSVDELPVQ-------IIVTIYDWDII 86
           E F F+V   P Q       ++ T+ D+D++
Sbjct: 72  ESFEFNVP--PEQCSVEGALLLFTVKDYDLL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQI-I 77
           ++  KNL   ++ G+SDPY I+   +E    ++ V  +  P WGEE+      LP     
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV---HLPPGFHT 62

Query: 78  VTIY--DWDIIWKSTVLGSVIVTVE 100
           V+ Y  D D + +  V+G V +T E
Sbjct: 63  VSFYVLDEDTLSRDDVIGKVSLTRE 87

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
          ++ A  L  A++ G SDP+ ++   + +  +  +  +  P W + F F + ++   + VT
Sbjct: 7  VIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVT 66

Query: 80 IYDWDIIWKSTVLGSVIV 97
          +YD D   K   LG V +
Sbjct: 67 VYDEDKDKKPEFLGKVAI 84

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 23  AKNLIGAN-LNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTI 80
           AKNL   +  N   D Y  +    E+ F +  V  S  P +GE+F F +      +   I
Sbjct: 9   AKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYI 68

Query: 81  YDWDIIWKSTVLGSVIVTVE 100
           YD D++ + +V+G V +  E
Sbjct: 69  YDRDVLRRDSVIGKVAIKKE 88

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 24  KNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD 82
           +NL   +  GTSDPY     G +  + S  +  +  P+W E+F   ++++   + + ++D
Sbjct: 10  RNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD 69

Query: 83  WDIIWKSTVLGSVIVTVESE 102
           +D       +GS  V + + 
Sbjct: 70  YDRGLTDDFMGSAFVDLSTL 89

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 16 IKLELLAAKNL-IGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDELP 73
          +K+ ++AA++L +    +  +D +  +  GS    + +V  S  P+W  E F F VD+  
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 74 VQ---IIVTIYDWDIIWKSTVLGSVIV 97
          +Q   + + + D D    +  +G V +
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYI 87

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 23 AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQII 77
          AKNL  A       PY  +T G   + S +   +  P+W E F F V      EL +++ 
Sbjct: 9  AKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVK 68

Query: 78 VTIYDWDIIWKSTVLGSVIVTV 99
              D         LGS+ + +
Sbjct: 69 ----D---DKTGKSLGSLTLPL 83

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + +E+  AKNLI  + NG SDPY  +          K+ +  +  +  P+W E F F + 
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 70  -DELPVQIIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
             +   ++ + ++DWD   ++  +GS+   V E        WY L
Sbjct: 75  PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGE----EFNFSV 69
          + +++ ++ A+ L+G N+    DP   +  G +K+++S+  G+  P + E     F+ S 
Sbjct: 4  FQVRVRVIEARQLVGGNI----DPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESP 59

Query: 70 DELPVQIIV-TIYDWDIIWKSTVLGS 94
          DEL  +II  ++YD   +   T++GS
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIGS 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRY---PMWGEEFNFSV--DEL 72
           ++ A +L   ++ GTSDPY  +    +K+  F + V   R    P++ E F F V   EL
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKV--HRKTLNPVFNETFTFKVPYSEL 79

Query: 73  PVQIIV-TIYDWDIIWKSTVLGSVIVT 98
             + +V ++YD+D   K  ++G V V 
Sbjct: 80  GNKTLVFSVYDFDRFSKHDLIGEVRVP 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFN 66
           +A  + L ++ A+NL   ++ G SDPY  ++   E     K+ +S+   +  P + E   
Sbjct: 12  TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALV 71

Query: 67  F-----SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSP 115
           F     +VD   V +I+ + D+D +  + ++G   V   ++GQ    W   L +P
Sbjct: 72  FDVPPENVDN--VSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 25  NLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DELPVQ-I 76
           NL   + NG SDP+  +    +     K  + +   +  P + EEF + +   +L  + +
Sbjct: 24  NLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTL 83

Query: 77  IVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY 110
            +T++D DI   +  +G + + + ++G+    W 
Sbjct: 84  EITVWDKDIGKSNDYIGGLQLGINAKGERLRHWL 117

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DEL 72
           +L A++L   +++G +DPY  +          K+ + +   +  P++ E F F +  +EL
Sbjct: 21  VLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80

Query: 73  P-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQV 119
             + +   + D D + K+ V+G +++  ++ G  G  W  + + P  Q+
Sbjct: 81  EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQI 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV---- 74
           E++ A++L+  +  G+S  Y  +    +K+ +   P    P+W E+  F+V +       
Sbjct: 5   EVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64

Query: 75  QIIVTIY-DWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLD 113
            + V +Y D     + + LG V +   +     +     Y L+
Sbjct: 65  VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 23  AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-VTIY 81
            ++L   N NG SDPY  ++ GS++  + +V  +  P W     F V +L   ++ +T++
Sbjct: 24  GRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVF 83

Query: 82  DWDIIWKSTVLG------SVIVTVESEG-------------QTGAVWYTLD 113
           D D       LG      + I+    E               TG V   LD
Sbjct: 84  DRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLD 134

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	527
KOG1032	590	consensus Uncharacterized conserved protein, conta	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.84
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.79
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.79
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.77
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.77
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.76
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.75
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.75
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.75
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.75
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.74
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.74
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.73
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.72
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.72
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.72
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.72
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.72
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.72
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.72
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.71
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.71
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.71
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.7
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.7
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.69
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.69
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.69
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.69
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.69
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.68
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.68
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.68
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.67
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.67
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.67
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.67
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.67
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.67
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.66
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.66
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.66
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.66
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.65
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.65
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.65
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.64
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.64
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.64
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.64
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.63
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.63
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.63
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.63
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.62
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.62
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.62
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.61
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.61
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.61
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.61
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.61
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.6
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.59
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.59
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.59
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.59
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.59
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.57
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.57
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.56
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.56
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.55
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.55
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.55
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.55
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.54
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.53
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.52
KOG1032	590	consensus Uncharacterized conserved protein, conta	99.52
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.52
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.52
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.52
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.52
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.51
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.5
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.49
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.49
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.49
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.48
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.47
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.46
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.46
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.46
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.44
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.43
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.43
PLN03008	868	Phospholipase D delta	99.42
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.27
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.18
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.12
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.01
PLN02223	537	phosphoinositide phospholipase C	98.99
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.97
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	98.91
PLN02952	599	phosphoinositide phospholipase C	98.87
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.85
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.82
PLN02230	598	phosphoinositide phospholipase C 4	98.78
PLN02270	808	phospholipase D alpha	98.76
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.74
PLN02222	581	phosphoinositide phospholipase C 2	98.72
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.7
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.69
PLN02228	567	Phosphoinositide phospholipase C	98.69
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.66
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.64
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.53
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.36
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.15
PLN02352	758	phospholipase D epsilon	97.97
KOG4347	671	consensus GTPase-activating protein VRP [General f	97.95
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.88
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.66
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.65
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.65
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.53
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.5
PLN02964	644	phosphatidylserine decarboxylase	97.11
PF14470	96	bPH_3: Bacterial PH domain	97.1
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	96.9
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.77
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	96.74
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	96.57
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.24
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	96.16
KOG3837	523	consensus Uncharacterized conserved protein, conta	95.95
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	95.3
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	94.85
KOG1452	442	consensus Predicted Rho GTPase-activating protein	94.43
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.24
PF15627	156	CEP76-C2: CEP76 C2 domain	94.12
cd08871	222	START_STARD10-like Lipid-binding START domain of m	93.44
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	93.08
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	93.03
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	93.03
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	92.91
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	91.64
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	91.63
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	91.45
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	91.3
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	91.19
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	90.67
smart00234	206	START in StAR and phosphatidylcholine transfer pro	89.32
PF01852	206	START: START domain; InterPro: IPR002913 START (St	89.2
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	88.97
cd00177	193	START Lipid-binding START domain of mammalian STAR	88.67
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	87.35
cd08905	209	START_STARD1-like Cholesterol-binding START domain	85.97
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	85.42
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	85.35
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	85.01
PF11696	642	DUF3292: Protein of unknown function (DUF3292); In	83.79
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	83.11
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	82.73
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	82.56
cd08872	235	START_STARD11-like Ceramide-binding START domain o	82.25
cd08904	204	START_STARD6-like Lipid-binding START domain of ma	81.75
cd08906	209	START_STARD3-like Cholesterol-binding START domain	80.83
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	80.38

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=100.00  E-value=2.9e-37  Score=329.27  Aligned_cols=324  Identities=22%  Similarity=0.319  Sum_probs=246.7

Q ss_pred             cccccc--ccCcccceeEeEEEeeeeccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccC-cEEEE
Q 009741          164 PLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITII  240 (527)
Q Consensus       164 ~f~~~F--~lp~~e~l~~~f~c~l~~~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~-~i~i~  240 (527)
                      .|...+  ++|+++.|+.+|+|+|++.+++|||||++..||||||++|||+++.+||+.+|+.|+|+.+++++| +|+|.
T Consensus       108 ~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~  187 (590)
T KOG1032|consen  108 NLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEIT  187 (590)
T ss_pred             hhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEe
Confidence            444444  388999999999999999999999999999999999999999999999999999999999998866 88888


Q ss_pred             EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHhhccCch-hHHhhhhhhccccCC--C---CCCCCccc-
Q 009741          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLE-AEKKEKAESALRAHS--S---SIGGSRRQ-  313 (527)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~~~~~~~~~~~-~~~~~~~~s~~~~~s--s---~~~~~~~~-  313 (527)
                      +                +..+|+|+||++||.+|.++..+.+..-.... ......+.+....+.  +   +.+....+ 
T Consensus       188 t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s  251 (590)
T KOG1032|consen  188 T----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPS  251 (590)
T ss_pred             c----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCcc
Confidence            4                45799999999999999977555443211100 000000000000000  0   00000000 


Q ss_pred             ccccccccCCC----CCCCCCCcccccceeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCe
Q 009741          314 AKIVEETVTKP----EKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQ  389 (527)
Q Consensus       314 ~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~  389 (527)
                      +.......+..    ......+++ .+..+.+..|++++..+|.++|+ +..|+..+.+.++..++...+|..... +..
T Consensus       252 ~~~~s~~~~~~e~~~~~~~~~~~~-~~~v~~~~~~s~~~~~~~~~lf~-d~~~~~~~l~~~~~~~vs~~~~~~~~~-~~~  328 (590)
T KOG1032|consen  252 ALQNSFDSPKEEELEHDFSCSLSR-LFGVLGRLPFSAPIGAFFSLLFG-DNTFFFFFLEDQDEIQVSPIPWKGPRS-GIL  328 (590)
T ss_pred             ccccccCCCccccccccccccccc-cccccccccccccccccceeecc-CcceeeeccccccccccccccccCCCc-cce
Confidence            00000000000    011111121 12467889999999999999999 677877899999999999999999776 789


Q ss_pred             EEEEEEEEecCCCCCCcceeEeEEEEEEEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeE
Q 009741          390 VREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGA  469 (527)
Q Consensus       390 ~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V  469 (527)
                      .|.++|+.++..++|||+|.|..+|.+.+.+...|+.|..++.+++||||+.|.+.+||+|+|.++..|++.++   .+|
T Consensus       329 ~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~---~~V  405 (590)
T KOG1032|consen  329 LRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS---TSV  405 (590)
T ss_pred             eEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce---eEE
Confidence            99999999999999999999999999998777778999999999999999999999999999999999999999   999


Q ss_pred             EEeecceeeeeeehhh--HHHHHHHHHHHHHHHHHHHhhcCC
Q 009741          470 HFKKWCVIQFKIKTGA--VNKYKKEVELMLETARSYIKICTS  509 (527)
Q Consensus       470 ~f~K~t~~K~~Ie~~~--~~~~~~~~~~~~~~~~~~l~~~~~  509 (527)
                      .|.+++|.+.+++..+  .+.+.+.+++++..+++.-+....
T Consensus       406 ~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~  447 (590)
T KOG1032|consen  406 EWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEK  447 (590)
T ss_pred             EeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcc
Confidence            9999998888877765  677788888888766655444433

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.84  E-value=6.7e-20  Score=158.50  Aligned_cols=112  Identities=20%  Similarity=0.284  Sum_probs=98.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~   91 (527)
                      +|.|.|+|++|++|+..+ .|++||||++.+++++.+|+++.+ +.||.|||+|.|.+.+....|.|+|||+|.+++|++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~   79 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER   79 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence            479999999999998877 799999999999999999999866 799999999999997666789999999999999999


Q ss_pred             eEEEEEEcc-cC--CCcccEEEEccC-----CCceEEEEEEE
Q 009741           92 LGSVIVTVE-SE--GQTGAVWYTLDS-----PSGQVCLHIKT  125 (527)
Q Consensus        92 iG~~~i~l~-~l--~~~~~~w~~L~~-----~~G~i~l~l~~  125 (527)
                      ||.+.+++. .+  +...+.|++|.+     +.|+|+|+|++
T Consensus        80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999996 45  455789999976     34888887763

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=2e-18  Score=149.05  Aligned_cols=112  Identities=24%  Similarity=0.358  Sum_probs=101.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      +++|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.++ ...|.|+|||++..+++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            4789999999999999889999999999998899999999999999999999998765 578999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCCceEEEEEEEe
Q 009741           94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI  126 (527)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~l~~~  126 (527)
                      ++.++|+++  +...+.|++|.+..|++++.+++.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence            999999988  456778999998779998887663

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.79  E-value=2e-18  Score=151.43  Aligned_cols=99  Identities=25%  Similarity=0.494  Sum_probs=89.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC------CCcEEEEEEEEcCCCCCC
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS   89 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~------~~~~L~~~V~d~d~~~~d   89 (527)
                      ++|+|++|++|+.++..|.+||||++.++..+.+|+++++++||.|||+|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999999989999999999999999999999999999999999999865      356799999999999899


Q ss_pred             ceeEEEEEEcccCC----CcccEEEEccC
Q 009741           90 TVLGSVIVTVESEG----QTGAVWYTLDS  114 (527)
Q Consensus        90 ~~iG~~~i~l~~l~----~~~~~w~~L~~  114 (527)
                      ++||++.++|.++.    .....||+|.+
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~  109 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES  109 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence            99999999999973    44678999975

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=5.4e-18  Score=147.58  Aligned_cols=99  Identities=21%  Similarity=0.362  Sum_probs=90.3

Q ss_pred             EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC-----
Q 009741           16 IKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW-----   87 (527)
Q Consensus        16 L~V~vi~A~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~-----   87 (527)
                      |.|+|++|++   |+.++..|.+||||++.++.++.+|+++++++||.|||+|.|.+.++...|.|+|||++..+     
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~   81 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV   81 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence            7899999999   88889999999999999999999999999999999999999999776778999999999874     


Q ss_pred             -CCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           88 -KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        88 -~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                       +|++||++.+++..+  +.....||+|..
T Consensus        82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence             899999999999998  444568999974

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.77  E-value=2.2e-18  Score=152.30  Aligned_cols=113  Identities=24%  Similarity=0.392  Sum_probs=98.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i   92 (527)
                      -|.|.|.|++|.+|..+|..+++||||++.+++++.+|+++.+++||.|||.|.|.+.++...|+++|||+|.++.||||
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~m   84 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFM   84 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccccc
Confidence            58999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcccCCCcccEEEEcc--CCCceEEEEEEEe
Q 009741           93 GSVIVTVESEGQTGAVWYTLD--SPSGQVCLHIKTI  126 (527)
Q Consensus        93 G~~~i~l~~l~~~~~~w~~L~--~~~G~i~l~l~~~  126 (527)
                      |.++|+|.++......|+ |.  ...|.....+...
T Consensus        85 G~A~I~l~p~~~~~~~~~-l~~~~~~gt~~~~v~~s  119 (168)
T KOG1030|consen   85 GEATIPLKPLLEAQKMDY-LKLELLTGTAIGKVLLS  119 (168)
T ss_pred             ceeeeccHHHHHHhhhhc-cccccCCCcEeeEEEec
Confidence            999999999955555565 43  2345544444333

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=9.7e-18  Score=145.92  Aligned_cols=112  Identities=22%  Similarity=0.460  Sum_probs=97.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      .|+|+|++|++|+..+..|.+||||++.+++ ...+|+++.++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            3789999999999999999999999999976 567999999999999999999998776788999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC-----CceEEEEEEEe
Q 009741           94 SVIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI  126 (527)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~  126 (527)
                      ++.+++.++  +...+.|++|.++     .|.|.+.+++.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            999999998  4567789999642     36666666654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.76  E-value=2.5e-17  Score=142.76  Aligned_cols=112  Identities=23%  Similarity=0.461  Sum_probs=98.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      |.|.|+|++|++|+..+..+.+||||++.++....+|++++++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            67899999999999999899999999999998889999999999999999999998776788999999999988999999


Q ss_pred             EEEEEcccCCCcccEEEEccCC------CceEEEEEEE
Q 009741           94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKT  125 (527)
Q Consensus        94 ~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~  125 (527)
                      ++.+++.++......|++|.++      .|+|.+++.+
T Consensus        81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999996667899999642      3555555543

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=1.8e-17  Score=145.54  Aligned_cols=112  Identities=24%  Similarity=0.427  Sum_probs=97.9

Q ss_pred             eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 009741           14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST   90 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~   90 (527)
                      |.|.|+|++|++|+..+.  .+.+||||++.++....+|++++++.+|.|||+|.|.+.. ....|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999999988  8899999999999889999999999999999999999876 4678999999999988999


Q ss_pred             eeEEEEEEcccCC-----CcccEEEEccCC--------CceEEEEEEE
Q 009741           91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT  125 (527)
Q Consensus        91 ~iG~~~i~l~~l~-----~~~~~w~~L~~~--------~G~i~l~l~~  125 (527)
                      +||++.+++.++.     .....||+|.++        .|+|++++.|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999873     335789999764        4666666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.75  E-value=1.2e-17  Score=144.60  Aligned_cols=110  Identities=24%  Similarity=0.393  Sum_probs=93.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~   91 (527)
                      |.|.|+|++|++|+..+..+.+||||++.++....+|+++. +++||.|||.|.|.+..+ ...|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            67999999999999999999999999999998888999885 479999999999998753 567999999999876 899


Q ss_pred             eEEEEEEcccC--CCcccEEEEccCC---CceEEEEEE
Q 009741           92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK  124 (527)
Q Consensus        92 iG~~~i~l~~l--~~~~~~w~~L~~~---~G~i~l~l~  124 (527)
                      ||++.+++.++  +.....|++|..+   .|+|.++++
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~  117 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT  117 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence            99999999987  4456899999752   355555554

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.75  E-value=2.8e-17  Score=142.86  Aligned_cols=109  Identities=27%  Similarity=0.440  Sum_probs=93.9

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741           16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        16 L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      |.|+|++|++|++.+ ..|.+||||.+.++.. ..+|+++++++||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            679999999999874 4678999999999765 46899999999999999999999876678999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC------CceEEEEEE
Q 009741           94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK  124 (527)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~------~G~i~l~l~  124 (527)
                      .+.++++++  +...+.||+|.+.      .|++++.++
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            999999998  4455789999863      477766654

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=2e-17  Score=145.28  Aligned_cols=111  Identities=21%  Similarity=0.359  Sum_probs=94.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC----CcEEEEEEEEcCCCC-CC
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS   89 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~~~V~d~d~~~-~d   89 (527)
                      .|+|+|++|++|++.+..|.+||||++.++++.++|+++.++.||.|||.|.|.+..+    ...|.|+|||++..+ ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            3789999999999999889999999999999999999999999999999999998643    246999999999887 89


Q ss_pred             ceeEEEEEEcccCC---CcccEEEEccCC------CceEEEEEEE
Q 009741           90 TVLGSVIVTVESEG---QTGAVWYTLDSP------SGQVCLHIKT  125 (527)
Q Consensus        90 ~~iG~~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~l~~  125 (527)
                      ++||++.+++.++.   .....||+|..+      .|++.+.+.+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            99999999999873   445789999753      3555555443

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.74  E-value=4.5e-17  Score=144.39  Aligned_cols=116  Identities=22%  Similarity=0.405  Sum_probs=100.3

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCC
Q 009741           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWK   88 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~   88 (527)
                      ....|.|+|+|++|++|++.+..|.+||||++.++....+|++++++.||.|||+|.|.+.+. ...|.|+|||++..++
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            345799999999999999999999999999999999999999999999999999999998654 4579999999999999


Q ss_pred             CceeEEEEEEcccCC-------CcccEEEEccC-CCceEEEEEEE
Q 009741           89 STVLGSVIVTVESEG-------QTGAVWYTLDS-PSGQVCLHIKT  125 (527)
Q Consensus        89 d~~iG~~~i~l~~l~-------~~~~~w~~L~~-~~G~i~l~l~~  125 (527)
                      |++||++.+++.++.       .....|..|.. ..|++++++++
T Consensus        91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            999999999999872       22335777744 45999888875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=5.4e-17  Score=146.16  Aligned_cols=113  Identities=17%  Similarity=0.333  Sum_probs=97.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCcee
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL   92 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~i   92 (527)
                      .|.|+|++|++|++.+..|.+||||++.++++..+|+++.+ ++||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            37899999999999999999999999999999999999976 69999999999998654 45799999999998889999


Q ss_pred             EEEEEEcccCC------CcccEEEEccCCC------------ceEEEEEEEee
Q 009741           93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTIK  127 (527)
Q Consensus        93 G~~~i~l~~l~------~~~~~w~~L~~~~------------G~i~l~l~~~~  127 (527)
                      |++.++|+++.      ...++||+|....            |+|+++|.+..
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~  133 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG  133 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence            99999999883      3358999997532            66667666663

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.73  E-value=1.5e-16  Score=139.41  Aligned_cols=100  Identities=17%  Similarity=0.305  Sum_probs=91.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i   92 (527)
                      ...|+|+|++|++|...+..|.+||||++.++++..+|++++++.+|.|||.|.|.+.+....|.|+|||++.. +|++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            47899999999999999999999999999999999999999999999999999999877778899999999886 58999


Q ss_pred             EEEEEEcccCCCcccEEEEcc
Q 009741           93 GSVIVTVESEGQTGAVWYTLD  113 (527)
Q Consensus        93 G~~~i~l~~l~~~~~~w~~L~  113 (527)
                      |.+.++++++......|++|.
T Consensus        81 G~~~~~l~~~~~~~~~~~~l~  101 (126)
T cd04046          81 GQATLSADPNDSQTLRTLPLR  101 (126)
T ss_pred             EEEEEecccCCCcCceEEEcc
Confidence            999999998876677899995

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.72  E-value=8.6e-17  Score=139.93  Aligned_cols=109  Identities=25%  Similarity=0.437  Sum_probs=94.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS   94 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~   94 (527)
                      |.|+|++|++|++++..|.+||||++.+++.. .+|+++++++||.|||.|.|.+......|.|.|||++..+++++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999999999999999999997654 59999999999999999999987766789999999999999999999


Q ss_pred             EEEEcccCC---CcccEEEEccCC------CceEEEEEE
Q 009741           95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK  124 (527)
Q Consensus        95 ~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~l~  124 (527)
                      +.+++..+.   ...+.|++|.+.      .|++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            999998873   236789999752      366655543

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.72  E-value=8.2e-17  Score=139.65  Aligned_cols=111  Identities=23%  Similarity=0.381  Sum_probs=95.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~   90 (527)
                      .|+|+|++|++|+..+..+.+||||++.+.   ....+|++++++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus         1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            378999999999999888999999999985   3567899999999999999999998653 45699999999998 899


Q ss_pred             eeEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEEe
Q 009741           91 VLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI  126 (527)
Q Consensus        91 ~iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~l~l~~~  126 (527)
                      +||++.++++++  +.....|++|.++ .|++.+++.++
T Consensus        80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~  118 (119)
T cd04036          80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE  118 (119)
T ss_pred             ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence            999999999998  4567789999763 57777777654

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.72  E-value=9.3e-17  Score=139.55  Aligned_cols=111  Identities=24%  Similarity=0.465  Sum_probs=97.1

Q ss_pred             eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCC
Q 009741           14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII   86 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~   86 (527)
                      |.|.|+|++|++|+..+.      .|.+||||++.+++...+|++++++.+|.|+|+|.|.+.+ ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999998875      3689999999999988999999999999999999999865 456899999999987


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEE
Q 009741           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT  125 (527)
Q Consensus        87 ~~d~~iG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~l~l~~  125 (527)
                       ++++||++.+++.++  ....+.||+|.+ ..|+++++++|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence             889999999999988  444679999975 57998887654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.72  E-value=1.2e-16  Score=139.34  Aligned_cols=99  Identities=29%  Similarity=0.592  Sum_probs=90.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEE
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS   94 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG~   94 (527)
                      |+|+|++|++|+.++..+.+||||.+++++...+|++++++.||.|||+|.|.+... ...|.|+|||++..+++++||+
T Consensus         2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~   81 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK   81 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence            789999999999999888999999999998889999999999999999999998664 4679999999999999999999


Q ss_pred             EEEEcccC--CCcccEEEEccC
Q 009741           95 VIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        95 ~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      +.+++.++  ......||.|.+
T Consensus        82 ~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          82 VVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEHHHcccCCCCCCEEECCC
Confidence            99999998  345688999976

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.72  E-value=1e-16  Score=140.46  Aligned_cols=109  Identities=23%  Similarity=0.420  Sum_probs=92.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      |.|+|++|++|+.  ..|.+||||++.++.  ...+|+++.+++||.|||.|.|.+......|.|+|||++..+++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999987  678999999999973  567999999999999999999999765678999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEe
Q 009741           94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI  126 (527)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~  126 (527)
                      ++.+++.++  ......|++|.++       .|++.+++.+.
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~  120 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM  120 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence            999999997  4456789999754       24555554443

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.72  E-value=4.3e-17  Score=138.95  Aligned_cols=100  Identities=17%  Similarity=0.261  Sum_probs=86.1

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d   82 (527)
                      .+..+.|+|+|++|++|+   ..|.+||||.+++..    .+++|++.++++||.|||+|.|++..   ....|.|+|||
T Consensus        10 ~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d   86 (118)
T cd08677          10 DKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC   86 (118)
T ss_pred             cCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence            456799999999999998   246799999999853    46689999999999999999999864   24569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009741           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L  112 (527)
                      +|.++++++||++.++++++  ....+.|.+|
T Consensus        87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            99999999999999999976  6677788765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.72  E-value=5.3e-17  Score=141.33  Aligned_cols=99  Identities=22%  Similarity=0.335  Sum_probs=87.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEe-cC---CCcEEEEEEEEc
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYDW   83 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v-~~---~~~~L~~~V~d~   83 (527)
                      .+.|.|.|++|++|++.+ .+.+||||++++.     ..+++|++++++.||.|||+|.|.+ ..   ....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            578999999999999999 8999999999985     3467899999999999999999986 22   246799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009741           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L  112 (527)
                      +..+++++||++.++|.++  ......||+|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999998  4446789998

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.5e-16  Score=139.65  Aligned_cols=111  Identities=29%  Similarity=0.524  Sum_probs=95.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC--------
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII--------   86 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~--------   86 (527)
                      .|+|+|++|++|+..+..|.+||||++.++....+|+++.++++|.|||+|.|.+..+...|.|+|||++..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999999999999999999998888899999999999999999999876667899999999853        


Q ss_pred             ---CCCceeEEEEEEcccCCCcccEEEEccCCCc--eEEEEEEE
Q 009741           87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPSG--QVCLHIKT  125 (527)
Q Consensus        87 ---~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G--~i~l~l~~  125 (527)
                         +++++||++.+++.++......||.|.++.+  .+++.|.+
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~~  125 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRL  125 (127)
T ss_pred             ccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEEE
Confidence               4689999999999999777789999986432  34555443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.4e-16  Score=137.01  Aligned_cols=104  Identities=23%  Similarity=0.423  Sum_probs=88.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      +.|.|+|++|++|..++   ..||||++.+++++.+|++.+++ ||.|||.|.|.+.+....|.|+|||++.+ .|++||
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            57899999999997654   45899999999999999999884 99999999999988777799999999965 899999


Q ss_pred             EEEEEcccC----CCcccEEEEccC----CCceEEEE
Q 009741           94 SVIVTVESE----GQTGAVWYTLDS----PSGQVCLH  122 (527)
Q Consensus        94 ~~~i~l~~l----~~~~~~w~~L~~----~~G~i~l~  122 (527)
                      ++.|+|+++    .....+||+|.+    +.|++.+.
T Consensus        77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~  113 (127)
T cd08394          77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGT  113 (127)
T ss_pred             EEEEEhHHcccCCCCCCCccEecChHHhccCCeEecc
Confidence            999999998    233478999986    45665443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=1.5e-16  Score=141.87  Aligned_cols=103  Identities=16%  Similarity=0.287  Sum_probs=89.3

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEE-EcCC
Q 009741           13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~-d~d~   85 (527)
                      .+.|.|+|++|+||++.+ ..|.+||||++++..     .+++|+++++++||.|||+|.|.+......|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            578999999999999864 578899999999832     367899999999999999999999855678999999 5788


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009741           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (527)
                      ++++++||++.|+|+.+  ......||+|.++
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            88899999999999998  4556789999863

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.70  E-value=1.6e-16  Score=138.03  Aligned_cols=105  Identities=23%  Similarity=0.430  Sum_probs=89.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeEE
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGS   94 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~~iG~   94 (527)
                      |.|+|++|++|+.+    .+||||.+.++....+|++++++.||.|||+|.|.+.. ....|.|+|||++.. ++++||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            78999999999887    78999999999888899999999999999999999866 356799999999987 7899999


Q ss_pred             EEEEcccCCC-------cccEEEEccCCC-----ceEEEEEEE
Q 009741           95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIKT  125 (527)
Q Consensus        95 ~~i~l~~l~~-------~~~~w~~L~~~~-----G~i~l~l~~  125 (527)
                      +.++++++..       ....||+|.+..     |+|++.|.+
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999999832       235899997643     666666654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1.3e-16  Score=137.64  Aligned_cols=99  Identities=15%  Similarity=0.304  Sum_probs=84.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----C--eEEEeeeecCCCCCeeccEEEEEecCC----CcEEEEEEEEc
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW   83 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~--~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~~~V~d~   83 (527)
                      .|+|+|++|++|+..+ .|.+||||.+++.     .  ++++|+++.+++||.|||+|.|.+...    ...|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999888 5999999999972     2  345899999999999999999998632    23499999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      +..+++++||++.+++.++  +.....|++|.+
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            9888899999999999998  445678999975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.69  E-value=7.2e-16  Score=136.78  Aligned_cols=114  Identities=19%  Similarity=0.416  Sum_probs=94.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC----------CCcEEEEEEEEc
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW   83 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~----------~~~~L~~~V~d~   83 (527)
                      +.|+|+|++|++|++++..|.+||||++.+++...+|+++++++||.|||.|.|.+..          ....|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5789999999999999999999999999999999999999999999999999997421          124699999999


Q ss_pred             CCCCCCceeEEEEE-EcccC-----CCcccEEEEccC---CCceEEEEEEEee
Q 009741           84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK  127 (527)
Q Consensus        84 d~~~~d~~iG~~~i-~l~~l-----~~~~~~w~~L~~---~~G~i~l~l~~~~  127 (527)
                      +..++|++||++.+ ++..+     .....+|++|..   ..|+|.+.+++..
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~  133 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE  133 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence            99999999999986 33333     246679999974   2477777776654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.69  E-value=3.6e-16  Score=138.32  Aligned_cols=100  Identities=23%  Similarity=0.391  Sum_probs=88.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (527)
                      .|+|+|++|++|+..+..|.+||||++.+.+.       ..+|++++++.||.|||+|.|.+......|.|+|||++..+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            47899999999999998999999999998654       46899999999999999999998766678999999999999


Q ss_pred             CCceeEEEEEEcccCCC--------cccEEEEccC
Q 009741           88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDS  114 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l~~--------~~~~w~~L~~  114 (527)
                      ++++||++.+++.++..        ....||+|.+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~  115 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP  115 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence            99999999999999821        2358999975

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.69  E-value=2.5e-16  Score=137.82  Aligned_cols=103  Identities=21%  Similarity=0.368  Sum_probs=88.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~   81 (527)
                      ...+.|.|+|++|++|++++.. |.+||||++++.     ..+++|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            3457899999999999999875 899999999983     234689999999999999999999853   2457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~  113 (527)
                      |++.++++++||++.++|.++  ......||+|.
T Consensus        92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            999999999999999999998  44567899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.69  E-value=8.3e-16  Score=134.70  Aligned_cols=113  Identities=25%  Similarity=0.472  Sum_probs=97.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d   89 (527)
                      +.|+|+|++|++|+..+..+.+||||.+.+..   ...+|++++++.||.|||+|.|.+... ...|.|+|||++..+++
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            46899999999999999999999999998764   356899999999999999999998764 56799999999998899


Q ss_pred             ceeEEEEEEcccC--C---CcccEEEEccCCCceEEEEEEEee
Q 009741           90 TVLGSVIVTVESE--G---QTGAVWYTLDSPSGQVCLHIKTIK  127 (527)
Q Consensus        90 ~~iG~~~i~l~~l--~---~~~~~w~~L~~~~G~i~l~l~~~~  127 (527)
                      ++||++.++|.++  .   ...+.|++|.+ .|++++.|.+..
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~~  122 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSMEG  122 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEee
Confidence            9999999999875  2   24568999986 799888887764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.69  E-value=9.8e-16  Score=135.42  Aligned_cols=113  Identities=19%  Similarity=0.336  Sum_probs=98.8

Q ss_pred             ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCCcEEEEEEE
Q 009741           13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~   81 (527)
                      .|.|+|+|++|++|++.+..          +.+||||++.++++. .+|++++++.+|.|||+|.|.+.+ ...|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence            47899999999999988863          679999999998765 589999999999999999999974 678999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC----CcccEEEEccCCCceEEEEEEEee
Q 009741           82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK  127 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l~----~~~~~w~~L~~~~G~i~l~l~~~~  127 (527)
                      |++..+++++||++.++|+++.    ...+.|++|.+ .|++++++.+..
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~  130 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG  130 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence            9998889999999999999873    34688999985 799999888764

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.68  E-value=3.8e-16  Score=136.56  Aligned_cols=103  Identities=17%  Similarity=0.294  Sum_probs=88.7

Q ss_pred             CCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~   81 (527)
                      +..+.|.|.|++|++|++.+. .|.+||||++++.     ..+++|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            456889999999999998875 5789999999974     235689999999999999999999854   2457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~  113 (527)
                      |++..+++++||++.++|..+  ......|++|.
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            999999999999999999998  45568899983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.68  E-value=9.6e-16  Score=139.43  Aligned_cols=112  Identities=20%  Similarity=0.383  Sum_probs=93.9

Q ss_pred             ceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeeecCCCCCee
Q 009741           13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW   61 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d------------------------------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W   61 (527)
                      .|.|.|+|++|++|+.+|                              ..|.+||||.+.+++.. .+|+++.++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            488999999999999987                              35678999999998755 59999999999999


Q ss_pred             ccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEE
Q 009741           62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT  125 (527)
Q Consensus        62 ~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~  125 (527)
                      ||+|.|.+......|.|.|||++..+ +++||++.++++++  +...+.|++|.+.       .|+|++.+++
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999998776778999999999875 57999999999998  5567799999542       2456666554

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.68  E-value=3.7e-16  Score=140.09  Aligned_cols=99  Identities=21%  Similarity=0.384  Sum_probs=85.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEec---------------C-CC
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------E-LP   73 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~---------------~-~~   73 (527)
                      .|.|+|++|++|+.  ..|.+||||++.+..     ..++|+++++++||.|||+|.|.+.               + ..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37899999999988  578999999999865     5678999999999999999999984               1 12


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 009741           74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (527)
Q Consensus        74 ~~L~~~V~d~d~~~~d~~iG~~~i~l~~l~---~~~~~w~~L~~~  115 (527)
                      ..|.|.|||++..++++|||++.|++..+.   .....||+|.++
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            459999999999889999999999999994   346889999764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.67  E-value=2e-15  Score=132.26  Aligned_cols=110  Identities=22%  Similarity=0.343  Sum_probs=91.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCC-cEEEEEEEEcCCCCCCce
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~~~V~d~d~~~~d~~   91 (527)
                      ..|+|+|++|++|++.   +.+||||.+.+++.. .+|++ +++.||.|||+|.|.+..+. ..|.|.|||++..+++++
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            4699999999999874   478999999998644 57887 46899999999999865433 569999999999999999


Q ss_pred             eEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEee
Q 009741           92 LGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (527)
Q Consensus        92 iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~  127 (527)
                      ||++.++|..+  +...+.||+|.+.       .|+|++.+++..
T Consensus        80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            99999999988  4456789999753       288888888764

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.67  E-value=5.4e-16  Score=131.37  Aligned_cols=97  Identities=26%  Similarity=0.320  Sum_probs=87.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      .|.|+|++|++|+..+..+.+||||+++++++.++|+++.++.||.|||.|.|.+..+ ...|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            3789999999999998889999999999999999999999999999999999999764 5679999999886   78999


Q ss_pred             EEEEEcccCC----CcccEEEEccC
Q 009741           94 SVIVTVESEG----QTGAVWYTLDS  114 (527)
Q Consensus        94 ~~~i~l~~l~----~~~~~w~~L~~  114 (527)
                      ++.++|.++.    ...+.||+|.+
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCC
Confidence            9999999882    24678999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.67  E-value=4.2e-16  Score=136.63  Aligned_cols=103  Identities=18%  Similarity=0.376  Sum_probs=88.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~   81 (527)
                      ...+.|.|+|++|+||++++.. |.+||||++++.     ..+++|+++++++||.|||+|.|.+...   ...|.+.||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            4568999999999999999874 999999999974     2366899999999999999999998542   457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC-----CcccEEEEcc
Q 009741           82 DWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD  113 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l~-----~~~~~w~~L~  113 (527)
                      |++.++++++||++.|+|.++.     .....||+|.
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            9999999999999999999882     2456899983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.67  E-value=6.4e-16  Score=135.04  Aligned_cols=103  Identities=22%  Similarity=0.418  Sum_probs=91.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d   84 (527)
                      +..+.|.|+|++|++|++.+..|.+||||++.+.   ....+|++++++.||.|+|+|.|.+...   ...|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            4568999999999999999999999999999983   3457899999999999999999997642   457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~  113 (527)
                      .++++++||++.++++++  ....+.||+|.
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            999999999999999998  45678899985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.67  E-value=8.9e-16  Score=134.12  Aligned_cols=103  Identities=23%  Similarity=0.412  Sum_probs=90.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d   84 (527)
                      ...+.|.|+|++|++|++.+..+.+||||++.+.   ...++|++++++.||.|||+|.|.+..   ....|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            3457899999999999999989999999999974   245689999999999999999999754   2457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~  113 (527)
                      .++++++||++.++++++  +...+.|++|.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            999999999999999998  56678999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.67  E-value=7.1e-16  Score=134.86  Aligned_cols=103  Identities=21%  Similarity=0.376  Sum_probs=89.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~   81 (527)
                      ...+.|.|+|++|++|+..+..+.+||||++.+..     ..++|++++++.||.|||+|.|.+..    ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            45688999999999999999889999999999853     46689999999999999999998533    2467999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 009741           82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l-~~~~~~w~~L~  113 (527)
                      |++..+++++||++.++|.+. ......||+|+
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~  125 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence            999998999999999999984 44457899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.66  E-value=2.1e-15  Score=131.53  Aligned_cols=110  Identities=24%  Similarity=0.347  Sum_probs=92.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC--Ccee
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL   92 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~--d~~i   92 (527)
                      |+|+|++|++|+.++..+.+||||++.++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++..++  +++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999999999999999999996 667899999999999999999999976 7789999999998875  5899


Q ss_pred             EEEEEEcccCC---CcccEEEEccCC----CceEEEEEEEe
Q 009741           93 GSVIVTVESEG---QTGAVWYTLDSP----SGQVCLHIKTI  126 (527)
Q Consensus        93 G~~~i~l~~l~---~~~~~w~~L~~~----~G~i~l~l~~~  126 (527)
                      |++.+++.++.   .....|++|.+.    .|.+.+.|.+.
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~  121 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVS  121 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEE
Confidence            99999999982   224679999542    34455555544

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.66  E-value=4.9e-16  Score=133.00  Aligned_cols=99  Identities=18%  Similarity=0.294  Sum_probs=86.7

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 009741           14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~d~d~   85 (527)
                      |.|+|+|++|++|+..+.. +.+||||++.+.   ....+|+++++++||.|||+|.|.+..    ....|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999987 899999999974   345799999999999999999998754    24679999999999


Q ss_pred             CCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741           86 IWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l~~~~~~w~~L~  113 (527)
                      .++|++||++.+++.++. ....|+++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELI-EDRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence            999999999999999995 346788875

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.66  E-value=6.1e-16  Score=132.21  Aligned_cols=98  Identities=21%  Similarity=0.389  Sum_probs=87.4

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCee-ccEEEEEecCC---CcEEEEEEEEcCCCCCCc
Q 009741           16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST   90 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W-~e~f~f~v~~~---~~~L~~~V~d~d~~~~d~   90 (527)
                      |.|+|++|++|+.++. .|.+||||++.+++..++|+++++++||.| ||+|.|.+...   ...|.|+|||++..++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999999884 788999999999998899999999999999 99999998653   367999999999999999


Q ss_pred             eeEEEEEEcccCCC-----cccEEEEcc
Q 009741           91 VLGSVIVTVESEGQ-----TGAVWYTLD  113 (527)
Q Consensus        91 ~iG~~~i~l~~l~~-----~~~~w~~L~  113 (527)
                      +||++.+++.++..     ....||+|.
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            99999999999832     367899985

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.66  E-value=8e-16  Score=133.81  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=89.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEE
Q 009741           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~------~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V   80 (527)
                      .+..+.|.|+|++|+||++.+..+.+||||++++-      ..+++|++++++.||.|||+|.|++..   ....|.|+|
T Consensus        10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V   89 (124)
T cd08680          10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV   89 (124)
T ss_pred             CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence            35568899999999999999888899999999963      246789999999999999999999864   356799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC---CCcccEEEEc
Q 009741           81 YDWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL  112 (527)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~l---~~~~~~w~~L  112 (527)
                      |+++..+++++||++.|+|+++   ......||.|
T Consensus        90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            9999999999999999999988   2346779876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.65  E-value=1.2e-15  Score=129.80  Aligned_cols=89  Identities=18%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC--CcEEEEEEEEcCCCC
Q 009741           14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDIIW   87 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~~~V~d~d~~~   87 (527)
                      |+|.|+|++|++|++.+..    +.+||||++.++.+.++|+++++++||.|||.|.|.+.+.  ...|.|+|||++..+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            6899999999999987642    3589999999998889999999999999999999997542  346999999999999


Q ss_pred             CCceeEEEEEEcccC
Q 009741           88 KSTVLGSVIVTVESE  102 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l  102 (527)
                      +|++||++.++|+++
T Consensus        81 ~dd~IG~~~l~L~~l   95 (108)
T cd04039          81 FNDYVATGSLSVQEL   95 (108)
T ss_pred             CCcceEEEEEEHHHH
Confidence            999999999999998

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.65  E-value=2.6e-15  Score=130.28  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=90.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i   92 (527)
                      |.|.|+|++|++|++.+..+.+||||++.+++ ...+|++++++.+|.|||.|.|.+..+.+.|.|+|||++..+++++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            67999999999999999899999999999976 45789999999999999999999877678899999999999999999


Q ss_pred             EEEEEEcccC-CCcccEEEEccC
Q 009741           93 GSVIVTVESE-GQTGAVWYTLDS  114 (527)
Q Consensus        93 G~~~i~l~~l-~~~~~~w~~L~~  114 (527)
                      |++.+++.++ ....+.||.|..
T Consensus        81 G~~~~~l~~l~~~~~~~~~~~~~  103 (120)
T cd04045          81 GSVEINVSDLIKKNEDGKYVEYD  103 (120)
T ss_pred             eEEEEeHHHhhCCCCCceEEecC
Confidence            9999999998 456678888864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.65  E-value=2.3e-15  Score=131.65  Aligned_cols=104  Identities=21%  Similarity=0.347  Sum_probs=90.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEEEc
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW   83 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~d~   83 (527)
                      ...+.|.|+|++|++|+..+..+.+||||++.+   +.+..+|++++++.||.|||+|.|.+..    ....|.|+|||+
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            456889999999999999998999999999998   3456799999999999999999997422    235699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      +..+++++||++.+++.++  ......|+.|.+
T Consensus        93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            9999999999999999998  456788999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.64  E-value=9.6e-16  Score=132.72  Aligned_cols=100  Identities=30%  Similarity=0.459  Sum_probs=85.2

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC--CCcEEEEEEEEcC
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD   84 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~~~V~d~d   84 (527)
                      ..+.|.|+|++|++|++++ .|.+||||++++..     .+++|++++++.||.|||+|.|.+..  ....|.|+|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4578999999999999998 88999999999852     35689999999999999999999754  2356899999999


Q ss_pred             CCC-CCceeEEEEEEcccC--CCcccEEEEc
Q 009741           85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL  112 (527)
Q Consensus        85 ~~~-~d~~iG~~~i~l~~l--~~~~~~w~~L  112 (527)
                      ..+ .+++||++.+++.++  +.....||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            875 478999999999998  4445789986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.64  E-value=2.1e-15  Score=132.45  Aligned_cols=105  Identities=17%  Similarity=0.312  Sum_probs=88.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 009741           10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~   81 (527)
                      ....+.|+|+|++|++|++.+.. +.+||||++.+.   .++.+|+++++++||.|||+|.|. +..   ....|.|+||
T Consensus        12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~   91 (128)
T cd08388          12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL   91 (128)
T ss_pred             ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence            34568999999999999998875 899999999874   345689999999999999999994 432   2346999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--C--CcccEEEEccC
Q 009741           82 DWDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS  114 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l--~--~~~~~w~~L~~  114 (527)
                      |++.++++++||++.++|+++  .  .....|.+|++
T Consensus        92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             EcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            999999999999999999998  2  44567988864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.64  E-value=2.6e-15  Score=131.03  Aligned_cols=113  Identities=20%  Similarity=0.374  Sum_probs=93.2

Q ss_pred             eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009741           14 YLIKLELLAAKNLIGANL-NGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~   90 (527)
                      |.|.|+|++|++|+..+. .+.+||||++.++.  ...+|+++.++.+|.|||.|.|.+......|.|+|||++..++|+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            789999999999987653 56799999999987  678999999999999999999998866788999999999988999


Q ss_pred             eeEEEEEEcccCC--Cccc-EEEEccC---CCceEEEEEEEe
Q 009741           91 VLGSVIVTVESEG--QTGA-VWYTLDS---PSGQVCLHIKTI  126 (527)
Q Consensus        91 ~iG~~~i~l~~l~--~~~~-~w~~L~~---~~G~i~l~l~~~  126 (527)
                      +||.+.+++.++.  .... .|+.|..   ..|+|++.|++.
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~  123 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF  123 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence            9999999999982  2222 3555542   247777777664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.64  E-value=2.7e-15  Score=131.10  Aligned_cols=102  Identities=26%  Similarity=0.455  Sum_probs=91.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeccEEEEEecCC----CcEEEEEEEEcCCCCC
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK   88 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~----~~~L~~~V~d~d~~~~   88 (527)
                      |.|.|+|++|++|+..+..+.+||||++.++....+|+++.+ +.||.|||+|.|.+..+    ...|.|+|||++..++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            679999999999999998899999999999988889998875 89999999999998775    4679999999999889


Q ss_pred             CceeEEEEEEcccC--CCcccEEEEccCC
Q 009741           89 STVLGSVIVTVESE--GQTGAVWYTLDSP  115 (527)
Q Consensus        89 d~~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (527)
                      +++||++.+++.++  ....+.|+.|.++
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999998  4567889999873

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.63  E-value=3.7e-15  Score=129.91  Aligned_cols=102  Identities=20%  Similarity=0.372  Sum_probs=88.6

Q ss_pred             CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~   81 (527)
                      ...+.|.|+|++|++|+..+ ..+.+||||++.+..     ...+|++++++.+|.|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            45688999999999999988 788999999998731     457899999999999999999997642   457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009741           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L  112 (527)
                      |++..+++++||++.++|+++  +.....||+|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999999999999999999998  5556889987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.63  E-value=1.9e-15  Score=132.28  Aligned_cols=110  Identities=23%  Similarity=0.415  Sum_probs=94.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeec-CCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW   87 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~W~e~f~f~v~~~-----~~~L~~~V~d~d~~~   87 (527)
                      .|+|+|++|++|+..+..+.+||||+++++. ...+|+++. ++.||.|||.|.|.+...     ...|.|+|||++..+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4789999999999999889999999999987 778899985 589999999999998765     567999999999988


Q ss_pred             CCceeEEEEEEcccC--CCc-----ccEEEEccCCCceEEEEEE
Q 009741           88 KSTVLGSVIVTVESE--GQT-----GAVWYTLDSPSGQVCLHIK  124 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l--~~~-----~~~w~~L~~~~G~i~l~l~  124 (527)
                      ++++||++.+++.++  ...     ...||+|..+.|+..+.|.
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~  124 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN  124 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence            999999999999998  222     3689999876677666654

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.63  E-value=3.8e-15  Score=130.63  Aligned_cols=103  Identities=19%  Similarity=0.319  Sum_probs=89.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|++|+..+..+.+||||++.+.     ...++|++++++.||.|||+|.|.+...   ...|.|.|||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            4568899999999999999988999999999984     3567999999999999999999998542   3579999999


Q ss_pred             cCCC--CCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741           83 WDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (527)
Q Consensus        83 ~d~~--~~d~~iG~~~i~l~~l--~~~~~~w~~L~  113 (527)
                      ++..  +++++||++.++|.++  +.....||+|.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            9875  6899999999999998  45567899883

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.63  E-value=4.2e-15  Score=129.62  Aligned_cols=104  Identities=20%  Similarity=0.324  Sum_probs=89.7

Q ss_pred             CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~   83 (527)
                      ...+.|.|+|++|++|+..+ ..+.+||||++++.   ....+|++++++.||.|||.|.|.+...   ...|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            44678999999999999998 68899999999973   3456899999999999999999998642   35799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      +..+++++||++.++|+++  ......|++|++
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            9988899999999999998  445578999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.62  E-value=4e-15  Score=132.99  Aligned_cols=88  Identities=25%  Similarity=0.468  Sum_probs=84.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      |.|.|+|++|++|+..+. +.+||||++.++.+..+|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999998887 8999999999999999999999999999999999999888888999999999999999999


Q ss_pred             EEEEEcccC
Q 009741           94 SVIVTVESE  102 (527)
Q Consensus        94 ~~~i~l~~l  102 (527)
                      ++.+++.++
T Consensus        81 ~a~i~l~~l   89 (145)
T cd04038          81 EAEIDLEPL   89 (145)
T ss_pred             EEEEEHHHh
Confidence            999999998

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.62  E-value=5e-15  Score=129.33  Aligned_cols=104  Identities=19%  Similarity=0.345  Sum_probs=89.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 009741           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~d   82 (527)
                      ......|.|+|++|+||++.+..|.+||||.+.+.   .++++|++.++ .||.|||+|.|. +..   ....|.|+|||
T Consensus        12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~   90 (124)
T cd08389          12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG   90 (124)
T ss_pred             CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence            34567899999999999999988999999998762   35668998887 999999999998 543   24569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      ++.++++++||++.++|+.+  ......|++|+|
T Consensus        91 ~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          91 VERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            99999999999999999998  456778999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.62  E-value=1.1e-15  Score=135.39  Aligned_cols=107  Identities=18%  Similarity=0.305  Sum_probs=92.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      ...+.|.|+|++|++|++.+..|.+||||++.+..     ...+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            45689999999999999999899999999999742     356899999999999999999997642   4579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (527)
                      ++..+++++||++.+++...+.....|+++....|
T Consensus        90 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~  124 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPD  124 (133)
T ss_pred             CCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCC
Confidence            99988999999999999987767788998864333

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.61  E-value=5.1e-15  Score=126.71  Aligned_cols=97  Identities=24%  Similarity=0.487  Sum_probs=85.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW   87 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-----~~~L~~~V~d~d~~~   87 (527)
                      -+.|+|+|++|++|+    .|.+||||++.+++++++|++++++.||.|||+|.|.+..+     ...|.|+|||++.++
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~   78 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR   78 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence            488999999999997    57899999999999999999999999999999999997543     356999999999998


Q ss_pred             CCceeEEEEEEcccCC-----CcccEEEEcc
Q 009741           88 KSTVLGSVIVTVESEG-----QTGAVWYTLD  113 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l~-----~~~~~w~~L~  113 (527)
                      ++++||++.++|+.+.     .....|++|.
T Consensus        79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             cCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            9999999999999882     2356799985

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.61  E-value=5.1e-15  Score=133.13  Aligned_cols=101  Identities=26%  Similarity=0.571  Sum_probs=88.2

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeeeecCCCC
Q 009741            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----------------------------KRFSSMVPGSRY   58 (527)
Q Consensus         8 ~~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-----------------------------~~~T~~~~~t~n   58 (527)
                      ...+..+.|.|+|++|++|.++|..|.+||||++.+...                             ..+|+++.+++|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            345779999999999999999999999999999998521                             257999999999


Q ss_pred             CeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC-CCcccEEEEc
Q 009741           59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL  112 (527)
Q Consensus        59 P~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l-~~~~~~w~~L  112 (527)
                      |.|||+|.|.+... ...|.|+|||++    +++||++.++++++ ....+.||+|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            99999999998653 567999999997    78999999999998 4567899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.61  E-value=1.5e-14  Score=127.00  Aligned_cols=93  Identities=22%  Similarity=0.362  Sum_probs=83.2

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 009741           20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI   96 (527)
Q Consensus        20 vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~~~d~~iG~~~   96 (527)
                      |++|++|+.  ..|.+||||++.++....+|++++++.||.|||+|.|.+..   ....|.|+|||++..+++++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            789999988  68899999999999888999999999999999999999854   3577999999999999999999999


Q ss_pred             EEcccC--CCcccEEEEccC
Q 009741           97 VTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        97 i~l~~l--~~~~~~w~~L~~  114 (527)
                      ++++++  +.....|++|..
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~   99 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLD   99 (127)
T ss_pred             EEhhHcccCCceEEEEeCcC
Confidence            999998  445577999964

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.61  E-value=5.6e-15  Score=134.92  Aligned_cols=104  Identities=21%  Similarity=0.268  Sum_probs=89.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~   81 (527)
                      ...+.|.|+|++|++|++.+..+.+||||.+.+.     ...++|++++++.||.|||+|.|.+..    ....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            3679999999999999999989999999999872     356789999999999999999998532    2356999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      |++.++++++||++.+.+..+  ....+.|+.|.+
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999998999999999999988  445688998864

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.61  E-value=4.9e-15  Score=133.05  Aligned_cols=100  Identities=21%  Similarity=0.325  Sum_probs=85.4

Q ss_pred             EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC--CCcEEEE
Q 009741           15 LIKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIV   78 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g--------------~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~~   78 (527)
                      .|.|+|++|++|+.+|..+              .+||||++.+++.+.+|++++++.||.|||+|.|.+..  ....|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            3789999999999988554              68999999999999999999999999999999999643  3568999


Q ss_pred             EEEEcCCCCCCceeEEEEEEcccC-CCcc--------cEEEEccC
Q 009741           79 TIYDWDIIWKSTVLGSVIVTVESE-GQTG--------AVWYTLDS  114 (527)
Q Consensus        79 ~V~d~d~~~~d~~iG~~~i~l~~l-~~~~--------~~w~~L~~  114 (527)
                      +|||+|..++|++||++.+++.++ ....        ..|+.|.+
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            999999999999999999999987 3333        36777743

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.60  E-value=8.9e-15  Score=127.54  Aligned_cols=94  Identities=19%  Similarity=0.368  Sum_probs=83.0

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCC
Q 009741            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDII   86 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~--~~~~~L~~~V~d~d~~   86 (527)
                      .....+.|.|+|++|++|+. +..+.+||||+|.++++.++|++++++.||.|||+|.|...  .....|.|+|||++..
T Consensus        23 ~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~  101 (127)
T cd04032          23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG  101 (127)
T ss_pred             CcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence            34557899999999999974 67789999999999988899999999999999999999743  2467899999999999


Q ss_pred             CCCceeEEEEEEcccCC
Q 009741           87 WKSTVLGSVIVTVESEG  103 (527)
Q Consensus        87 ~~d~~iG~~~i~l~~l~  103 (527)
                      ++|++||++.++|....
T Consensus       102 s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         102 WDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCeeEEEEEEecCCc
Confidence            99999999999998764

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.59  E-value=2.2e-15  Score=133.39  Aligned_cols=105  Identities=22%  Similarity=0.282  Sum_probs=89.1

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009741           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~   81 (527)
                      .+....|.|+|++|++|++.+..|.+||||++++..     .+.+|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~   90 (136)
T cd08406          11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA   90 (136)
T ss_pred             cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence            345678999999999999999899999999999732     24579999999999999999999864   2456999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009741           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~  114 (527)
                      |++..+++++||++.+.....+...+.|..+..
T Consensus        91 ~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~  123 (136)
T cd08406          91 ESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLA  123 (136)
T ss_pred             eCCCCCCCCeeEEEEECCCCCChhHHHHHHHHH
Confidence            999999999999999987776666777877754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.59  E-value=2e-15  Score=117.55  Aligned_cols=66  Identities=30%  Similarity=0.651  Sum_probs=48.8

Q ss_pred             ccccccccCcccceeEeEEEeeee-ccccceeEEeecceEEEEeccCCcee-EEEEecccceeeeecc
Q 009741          164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ  229 (527)
Q Consensus       164 ~f~~~F~lp~~e~l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~~  229 (527)
                      .|++.|+||++|.|+.+|.|+|.. +++.+|+||||.+++||+|+.+|..+ +++|||.||.+|+|.+
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~   69 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET   69 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence            589999999999999999999999 89999999999999999999999888 9999999999999864

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=8.9e-15  Score=129.92  Aligned_cols=99  Identities=20%  Similarity=0.411  Sum_probs=87.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeeeecCCCCCeeccEEEEEecCC----------------CcE
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ   75 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~v~~~----------------~~~   75 (527)
                      |.|+|++|++|+.+ ..|.+||||++++.    ...++|++++++.+|.|+|+|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 78899999999987    6778999999999999999999997543                456


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009741           76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (527)
Q Consensus        76 L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (527)
                      |.|+|||++..++++|||++.+++.++  ......||+|.++
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999988999999999999997  4456899999863

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.59  E-value=1.4e-14  Score=124.70  Aligned_cols=102  Identities=26%  Similarity=0.483  Sum_probs=89.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      |+|.|++|++|+..+..+.+||||++.+.+ ...+|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            579999999999998889999999999864 44699999999999999999999865 4577999999999988999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCCc
Q 009741           94 SVIVTVESE--GQTGAVWYTLDSPSG  117 (527)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~G  117 (527)
                      ++.+++.++  +...+.|++|.+++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g~  106 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQGG  106 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCCC
Confidence            999999997  456788999987544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.59  E-value=3.9e-15  Score=132.30  Aligned_cols=108  Identities=19%  Similarity=0.391  Sum_probs=91.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d   82 (527)
                      ...+.|.|+|++|++|+..+..|.+||||++.+..     ...+|+++++++||.|+|+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            34678999999999999999999999999999732     24579999999999999999999853   34569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (527)
                      ++..+++++||++.+++...+.....|++|....|+
T Consensus        92 ~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~  127 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRR  127 (136)
T ss_pred             CCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCC
Confidence            999999999999999999876667789998654444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.57  E-value=4e-15  Score=132.21  Aligned_cols=106  Identities=28%  Similarity=0.433  Sum_probs=90.6

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEE
Q 009741            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI   80 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V   80 (527)
                      +.+..+.|.|+|++|++|+.++..|.+||||++.+.  .   ..++|+++++++||.|||+|.|.+...   ...|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            445678999999999999999999999999999984  2   345799999999999999999997542   24699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009741           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (527)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~  114 (527)
                      ||++.++++++||++.+++...+.....|+++..
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~  123 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA  123 (136)
T ss_pred             EeCCCCCCCceeEEEEECCccCChHHHHHHHHHh
Confidence            9999999999999999999887666677888754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.57  E-value=5.2e-14  Score=121.51  Aligned_cols=105  Identities=29%  Similarity=0.433  Sum_probs=84.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcCCCCCCce
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d~~~~d~~   91 (527)
                      |.|+|++|++|+..   +.+||||.+++++.. ++|+++++ .+|.|||+|.|.+...   ...|.+.+||.+....+.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999876   789999999998754 68999988 9999999999998662   3458888999887766777


Q ss_pred             eEEEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 009741           92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (527)
Q Consensus        92 iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~  124 (527)
                      +|.+.+.....+...+.||+|.+.      .|+|++.+.
T Consensus        78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~  116 (117)
T cd08383          78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR  116 (117)
T ss_pred             EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence            887776665557777899999763      366666554

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.56  E-value=2.8e-14  Score=125.92  Aligned_cols=105  Identities=27%  Similarity=0.493  Sum_probs=91.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC--CcEEEEEEEEcCCC
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII   86 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~~~V~d~d~~   86 (527)
                      +.|.|+|++|++|+..+..+.+||||.+.+.     ...++|++++++.+|.|||+|.|.+...  ...|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            7899999999999998888899999999985     2567899999999999999999997653  46799999999998


Q ss_pred             CCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 009741           87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ  118 (527)
Q Consensus        87 ~~d~~iG~~~i~l~~l-~~~~~~w~~L~~-~~G~  118 (527)
                      +++++||++.+++.++ ......||+|.. +.|+
T Consensus        93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~  126 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE  126 (131)
T ss_pred             CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence            8999999999999998 446778999964 3454

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.56  E-value=1e-14  Score=129.13  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=86.5

Q ss_pred             CCCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEE
Q 009741           10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVT   79 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~   79 (527)
                      .+..+.|.|.|++|+||++++.  .+.+||||++++..     .+++|+++++++||.|||.|.|.+...   ...|.|+
T Consensus        11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~   90 (138)
T cd08407          11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE   90 (138)
T ss_pred             eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence            3456889999999999999883  35599999999743     245899999999999999999998642   4569999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (527)
Q Consensus        80 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~  113 (527)
                      |||+|.++++++||++.+.+...+.....|..+.
T Consensus        91 V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml  124 (138)
T cd08407          91 VLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEML  124 (138)
T ss_pred             EEeCCCCcCcceeceEEecCcCCCcHHHHHHHHH
Confidence            9999999999999999999987665566666663

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.55  E-value=2.1e-15  Score=149.66  Aligned_cols=106  Identities=25%  Similarity=0.494  Sum_probs=92.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC--CCcEEEEEEEEcCC
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~~~V~d~d~   85 (527)
                      ...|+|.|.+|+||.++|.+|.+||||.+.+-     ..+++|++++.++||.|||+|.|.+.+  .+++|.|+|||||.
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            45688999999999999999999999999972     345689999999999999999999754  36679999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 009741           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ  118 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l-~~~~~~w~~L~~-~~G~  118 (527)
                      .+++||+|...+.++++ ..+.+.||.|.. ..|+
T Consensus       259 TsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGE  293 (683)
T ss_pred             cccccccceecccHHHHhhcchhhHHHHhhhhcCc
Confidence            99999999999999999 567789999965 3454

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.55  E-value=1.1e-13  Score=122.34  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=82.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEeeeecCCCCCee-ccEEEEEecCCCcEEEEEE
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-------------EKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI   80 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~~~~t~nP~W-~e~f~f~v~~~~~~L~~~V   80 (527)
                      ...|.+++|++|+ ++..|++||||++.+..             +.++|+++++++||.| ||+|.|.+.. ...|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4689999999998 77899999999999842             3579999999999999 9999999864 57899999


Q ss_pred             EEcCCCCC---CceeEEEEEEcccCC-----CcccEEEEccCC
Q 009741           81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP  115 (527)
Q Consensus        81 ~d~d~~~~---d~~iG~~~i~l~~l~-----~~~~~w~~L~~~  115 (527)
                      ||++..+.   +++||++.+++.++.     .....||+|..+
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~  122 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR  122 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence            99875443   689999999999982     235679999753

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.55  E-value=1.2e-14  Score=129.10  Aligned_cols=105  Identities=26%  Similarity=0.420  Sum_probs=89.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|++|+..+..|.+||||++.+.  .   ...+|++++++.||.|||+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            4568899999999999999989999999999873  2   24589999999999999999999753   24579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP  115 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~  115 (527)
                      ++..+++++||++.+++...+.....|++|...
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~  124 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSK  124 (136)
T ss_pred             CCCCCCCcEeEEEEECCccCCchHHHHHHHHhC
Confidence            999999999999999999876666678777543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.55  E-value=3.5e-14  Score=125.60  Aligned_cols=92  Identities=22%  Similarity=0.419  Sum_probs=81.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeeeecCCCCCeeccEEEEEecC-----CCcEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVT   79 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~v~~-----~~~~L~~~   79 (527)
                      ....|+|+|++|++|+..+..|.+||||++++.       ....+|+++++++||.|||+|.|.+..     ....|.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            457899999999999999888999999999974       346789999999999999999999754     24579999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCC
Q 009741           80 IYDWDIIWKSTVLGSVIVTVESEG  103 (527)
Q Consensus        80 V~d~d~~~~d~~iG~~~i~l~~l~  103 (527)
                      |||++..+++++||++.++|+++.
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCC
Confidence            999999988999999999999983

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.54  E-value=1.7e-14  Score=127.78  Aligned_cols=107  Identities=23%  Similarity=0.413  Sum_probs=89.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..+.|+|+|++|++|++++..|.+||||++.+..     ...+|++++++.||.|+|+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            45688999999999999999999999999999731     245899999999999999999997532   2459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (527)
                      ++..+++++||++.+++...+.....|+++....|
T Consensus        91 ~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~  125 (134)
T cd08403          91 YDRVGHNELIGVCRVGPNADGQGREHWNEMLANPR  125 (134)
T ss_pred             CCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCC
Confidence            99999999999999998866666677888754333

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.53  E-value=2.5e-14  Score=126.88  Aligned_cols=107  Identities=21%  Similarity=0.431  Sum_probs=88.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-C----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-S----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-~----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|++|+..+..|.+||||.+.+. +    ..++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            4568899999999999999999999999999972 2    346899999999999999999998432   3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCc
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSG  117 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~-~~~~w~~L~~~~G  117 (527)
                      ++..+++++||++.|.....+. ..++|+.|....|
T Consensus        91 ~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~  126 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQR  126 (135)
T ss_pred             CCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCC
Confidence            9999999999999877655543 3577888865434

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.52  E-value=2.9e-13  Score=121.60  Aligned_cols=111  Identities=14%  Similarity=0.180  Sum_probs=88.7

Q ss_pred             EEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEecCC---------CcEEEEEE
Q 009741           17 KLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVTI   80 (527)
Q Consensus        17 ~V~vi~A~~--L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---------~~~L~~~V   80 (527)
                      .++|+.|++  |+..+..+.+||||++++     ..++.+|+++++|+||.|||+|.|.+...         ...|.|+|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            455666666  677777888999999986     24577999999999999999999998543         24599999


Q ss_pred             EEcCCC-CCCceeEEEEEEcccC--CCcccEEEEccC----CCceEEEEEEEee
Q 009741           81 YDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTIK  127 (527)
Q Consensus        81 ~d~d~~-~~d~~iG~~~i~l~~l--~~~~~~w~~L~~----~~G~i~l~l~~~~  127 (527)
                      ||++.+ .+|++||++.++|+.+  ......|++|..    .+|.+.+.+++..
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE  138 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence            999986 4799999999999999  445667999852    3477777777663

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=99.52  E-value=1.7e-14  Score=154.94  Aligned_cols=483  Identities=23%  Similarity=0.266  Sum_probs=278.5

Q ss_pred             CCCCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEc
Q 009741            5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW   83 (527)
Q Consensus         5 ~~~~~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~   83 (527)
                      ++.......+......+.+.++......+.++||..+..........+...+.+|.|++.+.|.-.. +-....+..++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~e  167 (590)
T KOG1032|consen   88 KGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDE  167 (590)
T ss_pred             CcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeee
Confidence            3444445566666666666666665566788999999888777778888888999999999998433 223445555555


Q ss_pred             CCC-CCCceeEEEEEEccc-CCCcccEEEEccCCCceEE---EEEEEeecccCccccccCccchhcccccccccCCCcee
Q 009741           84 DII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV  158 (527)
Q Consensus        84 d~~-~~d~~iG~~~i~l~~-l~~~~~~w~~L~~~~G~i~---l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (527)
                      ... .+..-.|.+...+.. .......|..|..+++...   +.+.-......+.+...+++...... ..-+.+.+.+.
T Consensus       168 I~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~-~~~~~~~~~~~  246 (590)
T KOG1032|consen  168 ITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPE-VNDDQQGNVDN  246 (590)
T ss_pred             eeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCC-cCccccccccc
Confidence            432 222223433222221 2455678999988776654   33333333333333344444332111 11111234556


Q ss_pred             ccCCcccccccccCcccceeEeEEEeeeeccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEE
Q 009741          159 HQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAIT  238 (527)
Q Consensus       159 ~~k~~~f~~~F~lp~~e~l~~~f~c~l~~~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~  238 (527)
                      .+.+.++...|++|++|.+..+++|.+.+...+.|+++++....+|++.+||-.+.+..+|+++..++........+...
T Consensus       247 ~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~  326 (590)
T KOG1032|consen  247 SQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSG  326 (590)
T ss_pred             CCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCcc
Confidence            77889999999999999999999999999999999999999999999999999999999999999999988776555422


Q ss_pred             EEEecCC---CCC---CCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHhhccCchhHHhhhhhhccccCCCCCCCCcc
Q 009741          239 IILRMGA---GGH---GVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRR  312 (527)
Q Consensus       239 i~~~~~~---~~~---~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~ss~~~~~~~  312 (527)
                      +..+.-+   +.+   |-+.. ...+...+.|..+...   ++++.+.........+........--.+..+.+..    
T Consensus       327 ~~~r~~~y~~~l~~~~gPk~t-~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~----  398 (590)
T KOG1032|consen  327 ILLRTLSYTKGLPAKSGPKST-DCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCK----  398 (590)
T ss_pred             ceeEeccCCccCCCcCCCccc-cccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCccee----
Confidence            2332222   222   22222 1224556666555332   44444443322211110000000000000000000    


Q ss_pred             cccccccccCCCCCCCCCCcccccceeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEE
Q 009741          313 QAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVRE  392 (527)
Q Consensus       313 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~  392 (527)
                       -.+..... -.+  .+  -...|.++.....++.++. |.-+|+ +..-...-+...+...+.-.+|+ .+..++..|.
T Consensus       399 -l~v~~~V~-~~~--~s--w~~~~~~~~~~~~k~lv~~-~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-v~~~~~~v~~  469 (590)
T KOG1032|consen  399 -LKVSTSVE-WTK--SS--WDVPVSEIGSNTLKDLVEI-LEKLLE-NGEELAKNQEKEDELTYEGSPWE-VEKPGGTVRQ  469 (590)
T ss_pred             -ecceeEEE-ecc--Cc--hhhccccccccchhhHHHH-HHHHHh-ccHHHHHhhcccccccccCCCcc-ccCCCceeee
Confidence             00000000 000  00  0000111111133344443 344454 34433333444445555566899 6666899999


Q ss_pred             EEEEEecCCCCCCcceeEeEEEEEEEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEe
Q 009741          393 VAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFK  472 (527)
Q Consensus       393 ~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~  472 (527)
                      ..|.---..++.|....+...|.....+....+.++..+..+++|||++|.++.||. .............   .++.|.
T Consensus       470 ~~~~~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~---~~~~~~  545 (590)
T KOG1032|consen  470 LSYKEVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTL---VWVSFR  545 (590)
T ss_pred             eccccccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhh---HHHHHH
Confidence            998865566788888888888887776666788999999999999999999999997 2222221111112   233333


Q ss_pred             ecceeeeeeehhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 009741          473 KWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTS  509 (527)
Q Consensus       473 K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l~~~~~  509 (527)
                      .+.+.+..++.+..+......+.+++++...+.....
T Consensus       546 ~~~l~~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~~~  582 (590)
T KOG1032|consen  546 IEWLKDIKMEARKIKQILRNDQDLLEVLFSLLEKLSQ  582 (590)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444555555555555555555555555544433

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.52  E-value=2.3e-13  Score=119.03  Aligned_cols=97  Identities=15%  Similarity=0.273  Sum_probs=83.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      .|.|+|++|+ |...+..+.+||||++.+++. ..+|++++++.+|.|+|.|.|.+.. ...|.|+|||++..+.+++||
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence            6899999998 555566889999999999877 7899999999999999999999865 678999999999999999999


Q ss_pred             EEEEEcccCC-----Cc--ccEEEEcc
Q 009741           94 SVIVTVESEG-----QT--GAVWYTLD  113 (527)
Q Consensus        94 ~~~i~l~~l~-----~~--~~~w~~L~  113 (527)
                      ++.++|.++.     ..  ...|++|.
T Consensus        81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~  107 (125)
T cd04021          81 EASLDLSDILKNHNGKLENVKLTLNLS  107 (125)
T ss_pred             EEEEEHHHhHhhcCCCccceEEEEEEE
Confidence            9999999872     11  22488885

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.52  E-value=6.4e-14  Score=121.64  Aligned_cols=95  Identities=16%  Similarity=0.254  Sum_probs=81.8

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeccEEEEEec-CCCcEEEEEEEEcCC----CC
Q 009741           20 LLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----IW   87 (527)
Q Consensus        20 vi~A~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~~~V~d~d~----~~   87 (527)
                      .++|++|+..+..|.+||||++.+...       ..+|+++++++||.|+|+|.|.+. +....|.|+|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            488999999999999999999998654       368999999999999999999854 345679999999997    78


Q ss_pred             CCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           88 KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      ++++||++.+++.++  ......|++|.+
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            999999999999998  455677888843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.52  E-value=2.6e-14  Score=127.02  Aligned_cols=106  Identities=19%  Similarity=0.329  Sum_probs=89.5

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEE
Q 009741            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT   79 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~   79 (527)
                      +....+.|.|+|++|+||++.+..|.+||||++.+..      .+++|++++++.||.|||+|.|.+..   ....|.|+
T Consensus        10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~   89 (138)
T cd08408          10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS   89 (138)
T ss_pred             EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence            3456789999999999999999899999999998732      24589999999999999999999864   24579999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCC-cccEEEEccC
Q 009741           80 IYDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDS  114 (527)
Q Consensus        80 V~d~d~~~~d~~iG~~~i~l~~l~~-~~~~w~~L~~  114 (527)
                      |||++.++++++||++.+++...+. ..+.|+.+..
T Consensus        90 V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~  125 (138)
T cd08408          90 VYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKE  125 (138)
T ss_pred             EEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHh
Confidence            9999999999999999998887753 4567888854

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.52  E-value=2.3e-14  Score=126.75  Aligned_cols=107  Identities=26%  Similarity=0.439  Sum_probs=92.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|++|+..+..+.+||||++.+...     ..+|+++.++.+|.|||+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            345789999999999999988899999999997532     45899999999999999999998653   4679999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (527)
                      .+..+++++||++.+++++.+...+.|++|....|
T Consensus        91 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~  125 (134)
T cd00276          91 KDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPR  125 (134)
T ss_pred             cCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCC
Confidence            99988999999999999997666788999975433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.51  E-value=1.2e-13  Score=120.64  Aligned_cols=89  Identities=24%  Similarity=0.500  Sum_probs=79.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~   91 (527)
                      +|+|.|++|++|+..+..|.+||||++.+++..  .+|+++++++||.|||+|.|.+..+ ...|.|+|||++..++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            378999999999999999999999999998765  4788889999999999999997543 5679999999999999999


Q ss_pred             eEEEEEEcccCC
Q 009741           92 LGSVIVTVESEG  103 (527)
Q Consensus        92 iG~~~i~l~~l~  103 (527)
                      ||++.+++.+..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.50  E-value=5.3e-14  Score=106.68  Aligned_cols=60  Identities=35%  Similarity=0.682  Sum_probs=57.0

Q ss_pred             ccCcccceeEeEEEeeeeccccceeEEeecceEEEEeccCCcee-EEEEecccceeeeecc
Q 009741          170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ  229 (527)
Q Consensus       170 ~lp~~e~l~~~f~c~l~~~~~~~Gr~yis~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~~  229 (527)
                      +||++|.|+.+|.|+|.++++.+||||||++++||+|+.+|+.+ +++||+.||.+|+|..
T Consensus         1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~   61 (61)
T smart00568        1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST   61 (61)
T ss_pred             CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence            47999999999999999999999999999999999999999999 9999999999999863

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.49  E-value=3.3e-13  Score=117.65  Aligned_cols=101  Identities=19%  Similarity=0.294  Sum_probs=84.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~   81 (527)
                      +..+.|.|+|++|++|++.+..+.+||||++.+.     ....+|++++++.||.|||+|.|. +..   ....|.|+||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            4568899999999999999888999999999873     235789999999999999999996 332   2457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 009741           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L  112 (527)
                      |++.. .+++||++.++++++......|+.+
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~  121 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNI  121 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence            99988 8899999999999996555555554

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.49  E-value=1.5e-13  Score=120.01  Aligned_cols=105  Identities=21%  Similarity=0.309  Sum_probs=85.7

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCC-CCeeccEEEEEecCC--CcEEEEEE
Q 009741            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDEL--PVQIIVTI   80 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~-nP~W~e~f~f~v~~~--~~~L~~~V   80 (527)
                      +.+..+.|+|.|++|+||++....+..||||.+.+-     -.+++|+++++++ +|.|||+|.|++...  ...|.++|
T Consensus         9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v   88 (135)
T cd08692           9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL   88 (135)
T ss_pred             ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence            346678999999999999998666778999999862     2356899999995 699999999998643  34588999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 009741           81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (527)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~l-~~~~~~w~~L~  113 (527)
                      ||++..+++++||++.+..++. +...++|.++.
T Consensus        89 ~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~  122 (135)
T cd08692          89 YSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTI  122 (135)
T ss_pred             EeCCCCcCCceEEEEEECCccCCchhhhhHHHHH
Confidence            9999999999999999999875 34467787764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.49  E-value=8.5e-13  Score=117.41  Aligned_cols=97  Identities=24%  Similarity=0.284  Sum_probs=82.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE-EeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC----
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----   87 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~----   87 (527)
                      -..|.|.|++|++|++++     +|||.+.+++... ||+++.++.||.|+|.|.|....+...|.|.||..+...    
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            357899999999998764     7999999998874 999999999999999999986555677999998765322    


Q ss_pred             CCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           88 KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      ++++||.+.|++..+  +...+.||+|.+
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~  113 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVST  113 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence            578999999999998  556789999965

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.48  E-value=4.4e-13  Score=114.67  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=81.4

Q ss_pred             CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCc
Q 009741           31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT  105 (527)
Q Consensus        31 ~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l---~~~  105 (527)
                      ..|.+||||.+.++++ ..+|++++++.||.|||.|.|.+.+. ...|.|.|||++.+ ++++||++.++|.++   ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            4788999999999875 46899999999999999999998764 46699999999998 899999999999987   233


Q ss_pred             ccEEEEccC-CCceEEEEEEEee
Q 009741          106 GAVWYTLDS-PSGQVCLHIKTIK  127 (527)
Q Consensus       106 ~~~w~~L~~-~~G~i~l~l~~~~  127 (527)
                      ...|++|.+ +.|+|++++.+.+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEec
Confidence            578999973 4688888877764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.47  E-value=7.5e-13  Score=112.57  Aligned_cols=81  Identities=15%  Similarity=0.339  Sum_probs=70.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEc-------
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW-------   83 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~-------   83 (527)
                      |.|+|++|+||+     +.+||||.+.++.     ...+|+++.+++||.|||+|.|.+.. ...|.+.|||+       
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~   74 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL   74 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence            579999999995     5699999998853     35799999999999999999999975 77899999998       


Q ss_pred             CCCCCCceeEEEEEEcccC
Q 009741           84 DIIWKSTVLGSVIVTVESE  102 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l  102 (527)
                      |..++|+++|.+.+.|+.-
T Consensus        75 d~~~~d~~~G~g~i~Ld~~   93 (118)
T cd08686          75 DGEGTDAIMGKGQIQLDPQ   93 (118)
T ss_pred             cccCcccEEEEEEEEECHH
Confidence            4667899999999988753

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.46  E-value=1.8e-12  Score=113.67  Aligned_cols=102  Identities=23%  Similarity=0.369  Sum_probs=85.5

Q ss_pred             eEEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEEEeeeecCCC-CCeeccEEEEEecCCC-cEEEEEEEEc
Q 009741           14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDELP-VQIIVTIYDW   83 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d--~~g~~dPyv~v~~------~~~~~~T~~~~~t~-nP~W~e~f~f~v~~~~-~~L~~~V~d~   83 (527)
                      ..|+|+|++|++|+..+  ..+..||||.+++      .....+|+++.++. +|.|+|+|.|.+..+. ..|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            47899999999999888  5789999999998      34567899988775 9999999999976543 4599999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (527)
                      +.. ++++||.+.++++++.. ...|++|..+.|
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~-g~~~~~l~~~~~  113 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQ-GYRHVPLLDSKG  113 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcC-ceEEEEecCCCC
Confidence            988 89999999999999954 357899965443

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.46  E-value=1.5e-13  Score=122.16  Aligned_cols=103  Identities=18%  Similarity=0.291  Sum_probs=84.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|++|++.+ .+.+||||++.+..     .+++|++++++.||.|||+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~   90 (137)
T cd08409          12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ   90 (137)
T ss_pred             CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence            45688999999999999988 88899999999742     35589999999999999999999853   23569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      ++..+++++||++.+.....  +...+.|..+..
T Consensus        91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            99989999999999986543  444566777643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=1.3e-13  Score=142.26  Aligned_cols=115  Identities=30%  Similarity=0.511  Sum_probs=103.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC------
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII------   86 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~------   86 (527)
                      ...++++|++|.+|..+|..|++||||...++..+++|+++...+||+|||.|.|++++...+|++.|||.|+.      
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999899999999998852      


Q ss_pred             -----CCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEEee
Q 009741           87 -----WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTIK  127 (527)
Q Consensus        87 -----~~d~~iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~~~  127 (527)
                           -+|+|+|++.|.+..+....+.||.|+.+      .|.|+++|.++-
T Consensus       374 qkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisvei  425 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVEI  425 (1283)
T ss_pred             HHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEEE
Confidence                 35899999999999998889999999752      388888887763

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.44  E-value=5.9e-13  Score=113.65  Aligned_cols=94  Identities=21%  Similarity=0.374  Sum_probs=78.6

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEeeeecCCCCCeeccEEEEEec-----CCCcEEEEEEEEcCCC
Q 009741           18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVD-----ELPVQIIVTIYDWDII   86 (527)
Q Consensus        18 V~vi~A~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~~~~t~nP~W~e~f~f~v~-----~~~~~L~~~V~d~d~~   86 (527)
                      +-.++|++|+..+..|.+||||++++...      .++|+++++++||.|+ +|.|.+.     +....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            45579999999999999999999987432      4689999999999999 7888753     2256799999999999


Q ss_pred             CCCceeEEEEEEcccCCCcccEEEEc
Q 009741           87 WKSTVLGSVIVTVESEGQTGAVWYTL  112 (527)
Q Consensus        87 ~~d~~iG~~~i~l~~l~~~~~~w~~L  112 (527)
                      ++|++||++.++++++...+..++.+
T Consensus        83 ~~d~~iG~~~~~l~~l~~~~~~~~~~  108 (110)
T cd04047          83 GKHDLIGEFETTLDELLKSSPLEFEL  108 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence            99999999999999996555555554

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.8e-12  Score=135.59  Aligned_cols=153  Identities=20%  Similarity=0.266  Sum_probs=114.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d   84 (527)
                      .....|+|+|++|++|+.++..|.+||||++++-   ..+.+|++.++++||.|||+|.|.+..   ....|.+.|||.|
T Consensus       164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d  243 (421)
T KOG1028|consen  164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD  243 (421)
T ss_pred             ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence            3456799999999999999977889999999984   355689999999999999999999642   3567999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEeecccCccccccCccchhcccccccccCCC
Q 009741           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP  155 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  155 (527)
                      .++++++||++.++|..+  ......|.+|.+.       .|++.+.|.+.+..-.    ++-.       -++.+.+..
T Consensus       244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~----ltv~-------v~kar~L~~  312 (421)
T KOG1028|consen  244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGR----LTVV-------VIKARNLKS  312 (421)
T ss_pred             CcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCe----EEEE-------EEEecCCCc
Confidence            999999999999999887  3335789999652       2588888887765211    1111       111223333


Q ss_pred             ceeccCCcccccccccCcc
Q 009741          156 TVVHQKPGPLQTIFNLLPD  174 (527)
Q Consensus       156 ~~~~~k~~~f~~~F~lp~~  174 (527)
                      .+..+.+++|.+..-++.+
T Consensus       313 ~~~~~~~d~~Vk~~l~~~~  331 (421)
T KOG1028|consen  313 MDVGGLSDPYVKVTLLDGD  331 (421)
T ss_pred             ccCCCCCCccEEEEEecCC
Confidence            3444566677776655544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.43  E-value=4e-13  Score=158.69  Aligned_cols=112  Identities=21%  Similarity=0.331  Sum_probs=97.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCC--cEEEEEEEEcCCCCC
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIWK   88 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~--~~L~~~V~d~d~~~~   88 (527)
                      --|.|.|+|++|.+|.  +..|.+||||++.++++ +.+|++++++.||.|||+|.|.+.+++  .+|+|+|||+|.+++
T Consensus      1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred             CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence            4689999999999998  45789999999999966 778999999999999999999887765  679999999999855


Q ss_pred             CceeEEEEEEcccC--CCcccEEEEccC---CCce---EEEEEEEe
Q 009741           89 STVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI  126 (527)
Q Consensus        89 d~~iG~~~i~l~~l--~~~~~~w~~L~~---~~G~---i~l~l~~~  126 (527)
                      | .+|.+.|++.++  +.....||+|.+   +.|+   +.+++.|.
T Consensus      2056 d-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2056 S-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             C-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            5 899999999998  566778999974   6788   77777765

>PLN03008 Phospholipase D delta

Probab=99.42  E-value=1.6e-12  Score=141.42  Aligned_cols=118  Identities=19%  Similarity=0.340  Sum_probs=97.8

Q ss_pred             ceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-EEE
Q 009741           13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSE-KRF   49 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~   49 (527)
                      .|.|.++|.+|++|+.+|.                                          .+++||||.|.++++ ..+
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            5789999999999975321                                          246799999999865 458


Q ss_pred             eeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEE
Q 009741           50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVC  120 (527)
Q Consensus        50 T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~  120 (527)
                      |+++++++||.|||+|.|.+..+...|.|+|||+|.++ +++||++.|++.++  +...+.|++|...       .++|+
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~  171 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF  171 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence            99999999999999999999877788999999999986 57999999999999  5567799999541       25777


Q ss_pred             EEEEEeecccC
Q 009741          121 LHIKTIKLPVN  131 (527)
Q Consensus       121 l~l~~~~~~~~  131 (527)
                      ++|++.+....
T Consensus       172 v~lqf~pv~~~  182 (868)
T PLN03008        172 IDMKFTPFDQI  182 (868)
T ss_pred             EEEEEEEcccc
Confidence            88888776544

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.27  E-value=2.8e-11  Score=97.41  Aligned_cols=81  Identities=26%  Similarity=0.505  Sum_probs=72.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~~   91 (527)
                      |+|+|++|++|+..+..+..+||+++.+..   ...+|++++++.+|.|+++|.|.+.. ....|.|+|||++..+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988888999999999865   66899999999999999999999643 34559999999999988999


Q ss_pred             eEEEE
Q 009741           92 LGSVI   96 (527)
Q Consensus        92 iG~~~   96 (527)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00030 C2 C2 domain

Probab=99.18  E-value=2.5e-10  Score=93.98  Aligned_cols=97  Identities=30%  Similarity=0.574  Sum_probs=84.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      |.|.|++|++|......+..+|||.+.+.. ...+|.+..++.+|.|++.|.|.+.. ....|.|+||+.+..+.+.++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            468999999998877778899999999987 77899999999999999999999876 5677999999999888889999


Q ss_pred             EEEEEcccCC---CcccEEEEc
Q 009741           94 SVIVTVESEG---QTGAVWYTL  112 (527)
Q Consensus        94 ~~~i~l~~l~---~~~~~w~~L  112 (527)
                      .+.+++..+.   .....|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999874   455677765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.12  E-value=7.3e-10  Score=91.54  Aligned_cols=88  Identities=24%  Similarity=0.505  Sum_probs=78.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~   91 (527)
                      |.|.|++|++|......+..+|||.+.+...   ..+|+++.++.+|.|+++|.|.+... ...|.|+||+.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6799999999988776678999999998764   68999999999999999999998776 7789999999998878899


Q ss_pred             eEEEEEEcccCC
Q 009741           92 LGSVIVTVESEG  103 (527)
Q Consensus        92 iG~~~i~l~~l~  103 (527)
                      +|.+.+++.++.
T Consensus        82 ~G~~~~~l~~~~   93 (101)
T smart00239       82 IGQVTIPLSDLL   93 (101)
T ss_pred             eEEEEEEHHHcc
Confidence            999999998883

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.01  E-value=9.8e-10  Score=115.76  Aligned_cols=115  Identities=23%  Similarity=0.369  Sum_probs=101.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i   92 (527)
                      -.|.|.|.+|+||++.+..|.+||||.|.++.. ..+|.++.+++.|-|.|+|.|.+...-..|.|=|||.| ++.|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            458899999999999999999999999999865 45999999999999999999999877788999999999 8999999


Q ss_pred             EEEEEEcccC--CCcccEEEEccC------CCceEEEEEEEeecc
Q 009741           93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKLP  129 (527)
Q Consensus        93 G~~~i~l~~l--~~~~~~w~~L~~------~~G~i~l~l~~~~~~  129 (527)
                      |.+.|.=.++  .++.+.|+.|.+      -.|++++++.+....
T Consensus        84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~  128 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI  128 (800)
T ss_pred             ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc
Confidence            9999988887  567899999965      138888888776543

>PLN02223 phosphoinositide phospholipase C

Probab=98.99  E-value=3.9e-09  Score=111.02  Aligned_cols=106  Identities=18%  Similarity=0.283  Sum_probs=85.2

Q ss_pred             ceEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCc-EEEEEEE
Q 009741           13 AYLIKLELLAAKNLIGA-----NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTIY   81 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~-----d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~~~V~   81 (527)
                      ...|.|+|+.|.+++..     +.....||||+|.+.     ...++|.+..++.||.|||+|.|.+..+.. .|+|+||
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46799999999987521     224568999999973     345578777889999999999999876655 4899999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCceE
Q 009741           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV  119 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~i  119 (527)
                      |+|..++++|+|++.+|+..+..+ -++++|..+.|..
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~~  524 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGKA  524 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcCC
Confidence            999988899999999999999765 5788887666653

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.97  E-value=4.1e-09  Score=92.18  Aligned_cols=88  Identities=17%  Similarity=0.266  Sum_probs=73.8

Q ss_pred             EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eEEEeeeecCCCC--CeeccEEEEEecC---------------
Q 009741           16 IKLELLAAKNLIGAN--LNG--TSDPYAIITCGS---EKRFSSMVPGSRY--PMWGEEFNFSVDE---------------   71 (527)
Q Consensus        16 L~V~vi~A~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~W~e~f~f~v~~---------------   71 (527)
                      |+|.|..|++++..+  ..|  .+||||+..+..   .+++|.+..+++|  |.||+.|.|++.-               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            789999999966543  356  499999999854   4578999999999  9999999988532               


Q ss_pred             ---------CCcEEEEEEEEcCCCCCCceeEEEEEEcccCC
Q 009741           72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESEG  103 (527)
Q Consensus        72 ---------~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l~  103 (527)
                               ....|.++|||.|.+++|++||.+.++|..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~  122 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP  122 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence                     13459999999999999999999999999883

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=2.7e-09  Score=111.82  Aligned_cols=91  Identities=26%  Similarity=0.422  Sum_probs=78.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..|.|+|.|++|++|+.++..+.+||||.+.+-     ..+++|.+.++++||.|||+|.|.+...   ...|.|+|||
T Consensus       295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d  374 (421)
T KOG1028|consen  295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD  374 (421)
T ss_pred             cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence            4579999999999999999999999999999862     2345799999999999999999988632   3459999999


Q ss_pred             cCCCCCCceeEEEEEEccc
Q 009741           83 WDIIWKSTVLGSVIVTVES  101 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~  101 (527)
                      ++.++..++||++.+....
T Consensus       375 ~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  375 HDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cccccccceeeEEEecCCC
Confidence            9999999999998887765

>PLN02952 phosphoinositide phospholipase C

Probab=98.87  E-value=1.5e-08  Score=108.76  Aligned_cols=104  Identities=16%  Similarity=0.269  Sum_probs=83.7

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCc-EEEEEE
Q 009741           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI   80 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~------d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~~~V   80 (527)
                      ...|.|+|+.|.+++..      +.....||||++.+-     ..+.+|+++.++.||.|||+|.|.+..+.. .|+|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999887432      112345899999863     456789999999999999999999766543 489999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (527)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (527)
                      ||+|..+.++|+|++.+++..+..+ -+|++|..+.|
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~G-yR~VpL~~~~G  584 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPG-IRSVPLHDKKG  584 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCC-ceeEeCcCCCC
Confidence            9999988899999999999999765 46999975444

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.85  E-value=9.7e-09  Score=114.11  Aligned_cols=105  Identities=23%  Similarity=0.382  Sum_probs=90.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWK   88 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~   88 (527)
                      .+.|-|+|.+..|.||+..+..|.+||||.+.+.+. .++|+++++++||.|||.|.+++.. ....+.+.|+|||...+
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence            357889999999999999999999999999999766 6799999999999999999999864 46779999999999999


Q ss_pred             CceeEEEEEEcccCCCccc--EEEEccCC
Q 009741           89 STVLGSVIVTVESEGQTGA--VWYTLDSP  115 (527)
Q Consensus        89 d~~iG~~~i~l~~l~~~~~--~w~~L~~~  115 (527)
                      ++.||.+.++|..+.+...  .-.+|.++
T Consensus      1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038        1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred             ccccccccccHhhcCcCCccceeeeccCc
Confidence            9999999999999943333  34455543

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.82  E-value=1.1e-09  Score=115.12  Aligned_cols=122  Identities=26%  Similarity=0.469  Sum_probs=97.3

Q ss_pred             CCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--e-----------------------------EEEeeeecC
Q 009741            7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--E-----------------------------KRFSSMVPG   55 (527)
Q Consensus         7 ~~~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~--~-----------------------------~~~T~~~~~   55 (527)
                      ++.++..+.+.|.+.+|.+|.+++.+|.+|||+...+..  .                             .+-|.+.++
T Consensus       107 ~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~  186 (1103)
T KOG1328|consen  107 KQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK  186 (1103)
T ss_pred             cCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc
Confidence            344566777888999999999999999999999875410  0                             012788899


Q ss_pred             CCCCeeccEEEEEecCC-CcEEEEEEEEcCC---------------------------------CCC---CceeEEEEEE
Q 009741           56 SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDI---------------------------------IWK---STVLGSVIVT   98 (527)
Q Consensus        56 t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~---------------------------------~~~---d~~iG~~~i~   98 (527)
                      |+||.|+|.|.|++.+. ...+++-+||+|.                                 .+.   |||+|++.|+
T Consensus       187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip  266 (1103)
T KOG1328|consen  187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP  266 (1103)
T ss_pred             cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence            99999999999999774 5679999999983                                 123   7999999999


Q ss_pred             cccC-CCcccEEEEccCCC------ceEEEEEEEeec
Q 009741           99 VESE-GQTGAVWYTLDSPS------GQVCLHIKTIKL  128 (527)
Q Consensus        99 l~~l-~~~~~~w~~L~~~~------G~i~l~l~~~~~  128 (527)
                      |.++ ..+.++||.|+++.      |++++.|.+.-.
T Consensus       267 l~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~  303 (1103)
T KOG1328|consen  267 LAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTK  303 (1103)
T ss_pred             hhcCCcchHHHHhccCcccccccccceEEEEEEEeee
Confidence            9999 56789999998843      888887776644

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.78  E-value=3.7e-08  Score=105.72  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=83.9

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCc-EEEEEE
Q 009741           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI   80 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~------d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~~~V   80 (527)
                      ...|.|+|+.+.+++..      +.....||||+|.+-     ..+.+|++..++.||.|||+|.|.+.-+.. .|+|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999986421      223457999999972     345688888899999999999999766544 499999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (527)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (527)
                      ||+|..++++|+|+..+++..|..+ -+.++|..+.|.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G-yR~V~L~~~~G~  584 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQG-IHAVPLFNRKGV  584 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCc-cceEeccCCCcC
Confidence            9999988999999999999999765 557788765654

>PLN02270 phospholipase D alpha

Probab=98.76  E-value=1e-07  Score=104.53  Aligned_cols=116  Identities=18%  Similarity=0.331  Sum_probs=92.6

Q ss_pred             ceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCeE-EEeeeecCC-CCCeeccEEEEEecCC
Q 009741           13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDEL   72 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d------------------~~g~~dPyv~v~~~~~~-~~T~~~~~t-~nP~W~e~f~f~v~~~   72 (527)
                      .|.|.|+|++|++|+..+                  ..+.+||||.+.+++.+ .+|+++.+. .||.|+|.|.+.+.-.
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            478999999999998631                  13467999999998655 599999885 6999999999998777


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-----c--eEEEEEEEeecc
Q 009741           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----G--QVCLHIKTIKLP  129 (527)
Q Consensus        73 ~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~~-----G--~i~l~l~~~~~~  129 (527)
                      ...+.|.|.|.|.++.. +||.+.|++.++  +...+.|+++....     +  ++++++++.+..
T Consensus        87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~  151 (808)
T PLN02270         87 ASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT  151 (808)
T ss_pred             cceEEEEEecCCccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence            88899999999988554 999999999998  55688999995522     2  455566665543

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.74  E-value=4.2e-08  Score=80.84  Aligned_cols=82  Identities=16%  Similarity=0.281  Sum_probs=69.1

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009741           16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        16 L~V~vi~A~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~   91 (527)
                      |.|+|.+|+++...+   ..+.+||||.++++.. +.+|++   +.||.|||+|.|++.. ...+.+.|||... ...-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~nEiel~VyDk~~-~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-NNEEEVIVYDKGG-DQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-CcEEEEEEEeCCC-Ceecc
Confidence            579999999998887   5778999999999876 678888   4799999999999954 7889999999865 34457


Q ss_pred             eEEEEEEcccC
Q 009741           92 LGSVIVTVESE  102 (527)
Q Consensus        92 iG~~~i~l~~l  102 (527)
                      ||..-+.++++
T Consensus        76 i~llW~~~sdi   86 (109)
T cd08689          76 VGLLWLRLSDI   86 (109)
T ss_pred             eeeehhhHHHH
Confidence            88888888876

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.72  E-value=1.1e-07  Score=101.92  Aligned_cols=105  Identities=14%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             ceEEEEEEEEeecCC--C----CCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCc-EEEEEE
Q 009741           13 AYLIKLELLAAKNLI--G----ANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI   80 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~--~----~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~~~V   80 (527)
                      ...|.|+|+.|.+++  .    .+.....||||+|.+.     ..+.+|+++.++.||.|+|+|.|.+..+.. .|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753  1    1123457899999873     446789999999999999999999766544 499999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (527)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (527)
                      ||+|..+.++|+|+..+++..+..+ -+.++|..+.|.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~G-yR~V~L~~~~g~  567 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQG-IRAFPLHSRKGE  567 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCc-cceEEccCCCcC
Confidence            9999888899999999999999765 557788665554

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.70  E-value=5.4e-08  Score=104.51  Aligned_cols=104  Identities=21%  Similarity=0.341  Sum_probs=83.0

Q ss_pred             EEEEEEEEeecCCCCCC----CCCCCcEEEEEEC-----CeEEEeeee-cCCCCCeeccEEEEEecCCCcE-EEEEEEEc
Q 009741           15 LIKLELLAAKNLIGANL----NGTSDPYAIITCG-----SEKRFSSMV-PGSRYPMWGEEFNFSVDELPVQ-IIVTIYDW   83 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~----~g~~dPyv~v~~~-----~~~~~T~~~-~~t~nP~W~e~f~f~v~~~~~~-L~~~V~d~   83 (527)
                      +|.|.|+.+.++.+...    ...+||||.+.+-     ....+|+++ .++.||.|+|+|.|.+..+... |+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            79999999996655432    2458999999863     345689955 6789999999999998876654 89999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCceE
Q 009741           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV  119 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~i  119 (527)
                      |..++|+|+|+.++|+..+..+ -+-++|..+.|+.
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~G-yRhVpL~~~~G~~  731 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQG-YRHVPLLSREGEA  731 (746)
T ss_pred             CCCCcccccceeeccHHHhhCc-eeeeeecCCCCcc
Confidence            9999999999999999999765 4456666656654

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.69  E-value=1.1e-07  Score=105.97  Aligned_cols=122  Identities=16%  Similarity=0.332  Sum_probs=99.4

Q ss_pred             CCCCceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCC
Q 009741            9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI   85 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~   85 (527)
                      .+..-|+|.|+|.+|++|...+  ..+..|||+.+..... ..+|++.++++||+|||+|-+.+....++|.++|||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            4567899999999999999888  5889999999986533 348999999999999999999998888999999999998


Q ss_pred             CCCCceeEEEEEEcccC---CCcccEEEEccC---CCceEEEEEEEeeccc
Q 009741           86 IWKSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKLPV  130 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l---~~~~~~w~~L~~---~~G~i~l~l~~~~~~~  130 (527)
                      ..+|+.+|.+.++|..+   ......-+.+..   ..|++...+++.+...
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e  561 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIE  561 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccC
Confidence            89999999999999887   122223444422   3488888887776643

>PLN02228 Phosphoinositide phospholipase C

Probab=98.69  E-value=2.2e-07  Score=99.44  Aligned_cols=105  Identities=12%  Similarity=0.193  Sum_probs=82.7

Q ss_pred             ceEEEEEEEEeecCCC---CC---CCCCCCcEEEEEE-----CCeEEEeeeecCCCCCee-ccEEEEEecCCCc-EEEEE
Q 009741           13 AYLIKLELLAAKNLIG---AN---LNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW-GEEFNFSVDELPV-QIIVT   79 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~---~d---~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W-~e~f~f~v~~~~~-~L~~~   79 (527)
                      ...|.|+|+.|.+|+.   .+   .....||||++.+     +..+.+|+++.++.||.| +|+|.|.+..+.. -|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998731   11   2335799999986     234568999988899999 9999999766543 48999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (527)
Q Consensus        80 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (527)
                      |+|+|..+.++|+|++.+++..+..+ -+.++|..+.|+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~  547 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK  547 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence            99999888999999999999999654 567788665544

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.66  E-value=1.2e-08  Score=107.60  Aligned_cols=91  Identities=26%  Similarity=0.438  Sum_probs=79.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeccEEEEEecCCC-----cEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELP-----VQIIVT   79 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~~~~-----~~L~~~   79 (527)
                      +.-.|.|.|+.|+++.+.|.+|.+||||+|.+...       .++|+++++++||+|+|+|.|.|...+     ..|.|+
T Consensus       945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence            34467788999999999999999999999998643       358999999999999999999986432     239999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC
Q 009741           80 IYDWDIIWKSTVLGSVIVTVESE  102 (527)
Q Consensus        80 V~d~d~~~~d~~iG~~~i~l~~l  102 (527)
                      |+|+|-++.+||-|++.+.|+.+
T Consensus      1025 VMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             eeccceecccccchHHHHhhCCC
Confidence            99999999999999999999998

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.64  E-value=7.1e-08  Score=99.39  Aligned_cols=114  Identities=18%  Similarity=0.310  Sum_probs=95.4

Q ss_pred             eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCeec-cEEEEEecCC---CcEEEEEEEEcCCCCC
Q 009741           14 YLIKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDEL---PVQIIVTIYDWDIIWK   88 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~-e~f~f~v~~~---~~~L~~~V~d~d~~~~   88 (527)
                      |.|-|.|..||+|+.+|. ....|.||.+++.+..++|.+..+++||.|| +.|.|++++.   +.+|.+.+.|+|.++.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            678899999999999986 4468999999999999999999999999999 7799998763   4569999999999999


Q ss_pred             CceeEEEEEEcccC------------CCcccEEEEccC----CCceEEEEEEEee
Q 009741           89 STVLGSVIVTVESE------------GQTGAVWYTLDS----PSGQVCLHIKTIK  127 (527)
Q Consensus        89 d~~iG~~~i~l~~l------------~~~~~~w~~L~~----~~G~i~l~l~~~~  127 (527)
                      ++-||.+.|.++.+            +.....|+++..    -.|+|.+.+++..
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdl  137 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDL  137 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEee
Confidence            99999999999987            123457999854    2367766666553

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.53  E-value=3.3e-07  Score=97.96  Aligned_cols=99  Identities=15%  Similarity=0.275  Sum_probs=79.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEE-eeeecCCCCCeec-cEEEEEecCCCcE-EEEEEEEcC
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRF-SSMVPGSRYPMWG-EEFNFSVDELPVQ-IIVTIYDWD   84 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~-T~~~~~t~nP~W~-e~f~f~v~~~~~~-L~~~V~d~d   84 (527)
                      ...|.|.|+.||+|+... .|...|||.|.+     +..+++ |.++.+++||+|+ |.|+|.+.+|.-. |+|.||+.|
T Consensus      1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            467889999999998544 556779999986     334454 5555888999999 9999999886554 999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l~~~~~~w~~L~  113 (527)
                      .++...|||++..|+..+..+ -+-++|.
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLk 1170 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLK 1170 (1267)
T ss_pred             ccCCcceeeeeecchhhhhcc-ceeeecc
Confidence            999989999999999998543 4456664

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.36  E-value=1.4e-06  Score=92.56  Aligned_cols=108  Identities=26%  Similarity=0.441  Sum_probs=81.8

Q ss_pred             CCCCCCCceEEEEEE---------------EEeecCCCCCCCCCCCcEEEEEECCeE----EEeeeecCCCCCeeccEEE
Q 009741            6 GDPQTNSAYLIKLEL---------------LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFN   66 (527)
Q Consensus         6 ~~~~~~~~g~L~V~v---------------i~A~~L~~~d~~g~~dPyv~v~~~~~~----~~T~~~~~t~nP~W~e~f~   66 (527)
                      .+++++-+|.+.+.+               +.++.+.|.. ++.+|||+++...+..    .+|++.+++.+|.|+|.|.
T Consensus       108 VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~  186 (800)
T KOG2059|consen  108 VDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFY  186 (800)
T ss_pred             cCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhhee
Confidence            456666677776665               3344444443 5669999999875444    3899999999999999999


Q ss_pred             EEecCC----------------CcEEEEEEEE-cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           67 FSVDEL----------------PVQIIVTIYD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        67 f~v~~~----------------~~~L~~~V~d-~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      |.+...                ...|++++|+ ++....+.|+|++.+++..+  ....+.||-|.+
T Consensus       187 f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp  253 (800)
T KOG2059|consen  187 FEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP  253 (800)
T ss_pred             eeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence            987533                2348999999 55556699999999999987  455678999976

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.15  E-value=1.2e-06  Score=96.07  Aligned_cols=91  Identities=22%  Similarity=0.432  Sum_probs=81.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIW   87 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~   87 (527)
                      +-...++|++++|-+|.+.|..|.+|||+.+.++...  -+...+++++||+|.+.|.+...-+ ...|.++|||+|..+
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            4467888999999999999999999999999998776  3688899999999999999987654 456999999999999


Q ss_pred             CCceeEEEEEEccc
Q 009741           88 KSTVLGSVIVTVES  101 (527)
Q Consensus        88 ~d~~iG~~~i~l~~  101 (527)
                      .|+.||+..+.|..
T Consensus       690 ~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  690 QDEKIGETTIDLEN  703 (1105)
T ss_pred             ccchhhceehhhhh
Confidence            99999999998875

>PLN02352 phospholipase D epsilon

Probab=97.97  E-value=7e-05  Score=82.44  Aligned_cols=111  Identities=12%  Similarity=0.152  Sum_probs=80.4

Q ss_pred             CceEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCC-cEEEEEEEEcC
Q 009741           12 SAYLIKLELLAAKNLIGA----NLN-GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWD   84 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~----d~~-g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~~~V~d~d   84 (527)
                      -.|.|.++|.+|+-+...    ... ...+|||.+.++..+ .+|   .+..||.|+|.|.+.+.-.. ..+.|.|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            468899999999844322    111 123999999998655 477   55679999999999986555 679999977  


Q ss_pred             CCCCCceeEEEEEEcccC--CCc-ccEEEEccCCC-----c-eEEEEEEEeeccc
Q 009741           85 IIWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLPV  130 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l--~~~-~~~w~~L~~~~-----G-~i~l~l~~~~~~~  130 (527)
                         ...+||.+.|++.++  +.. .+.|+++....     | ++++.+.+.+...
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  134 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL  134 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence               357999999999998  323 78999996532     3 4555666555443

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=97.95  E-value=6.2e-06  Score=87.29  Aligned_cols=104  Identities=21%  Similarity=0.359  Sum_probs=85.4

Q ss_pred             eccCCcccccccccCcccceeEeEEEeeee---ccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccc-cc
Q 009741          158 VHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FI  233 (527)
Q Consensus       158 ~~~k~~~f~~~F~lp~~e~l~~~f~c~l~~---~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~-~~  233 (527)
                      .+.+++.| .+|+||  |.+...-.|.+.-   ..+.+||||++.+++||.|...+ ...+++|+..|..|++.... .+
T Consensus         6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~   81 (671)
T KOG4347|consen    6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLF   81 (671)
T ss_pred             hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccc
Confidence            45678899 999999  9999999999887   45689999999999999999875 58999999999999999844 34


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHH
Q 009741          234 NPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT  280 (527)
Q Consensus       234 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~~  280 (527)
                      ...|.+.++               +...+.|..+..|+..+.-+...
T Consensus        82 ~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~~  113 (671)
T KOG4347|consen   82 TQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHLP  113 (671)
T ss_pred             hhhhHHhhc---------------CcceEEecchhhHHHHHHHHhch
Confidence            446777664               45788999999999887544433

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.88  E-value=1.1e-05  Score=89.76  Aligned_cols=102  Identities=19%  Similarity=0.279  Sum_probs=84.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEEEc
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW   83 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~d~   83 (527)
                      +++|+|-|..|++|.-..-+...||||..++.     ..+++|+++++|.+|.|||....+ ...   ..+.|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            67899999999999766657789999999984     235689999999999999998877 221   246799999999


Q ss_pred             CCCCCCceeEEEEEEcccCCC--cccEEEEccC
Q 009741           84 DIIWKSTVLGSVIVTVESEGQ--TGAVWYTLDS  114 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~--~~~~w~~L~~  114 (527)
                      +.+....|+|.+.|+|..+..  ....||.|..
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            998889999999999998843  3348999964

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.66  E-value=8.6e-05  Score=63.35  Aligned_cols=97  Identities=19%  Similarity=0.303  Sum_probs=73.2

Q ss_pred             EEEEEEEeecCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeeecCCCCCeeccEEEEEec-----C--
Q 009741           16 IKLELLAAKNLIGANL-------------NGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD-----E--   71 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~-------------~g~~dPyv~v~~----~~~~~~T~~~~~t~nP~W~e~f~f~v~-----~--   71 (527)
                      |.|.|++|.+|+....             .=.-++||.+.+    +...++|+++.++-.|.|+..++|.+.     +  
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4688899998865321             112478999885    355678999999999999999999853     1  


Q ss_pred             ---------CCcEEEEEEEEcCCC----------CCCceeEEEEEEcccC---CCcccEEEEc
Q 009741           72 ---------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL  112 (527)
Q Consensus        72 ---------~~~~L~~~V~d~d~~----------~~d~~iG~~~i~l~~l---~~~~~~w~~L  112 (527)
                               ....+.|+||+....          .+|-.||.+.||+..+   ..+..+||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                     123489999997642          2456899999999998   5678899985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.00018  Score=75.78  Aligned_cols=101  Identities=17%  Similarity=0.284  Sum_probs=81.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeeeecCCCCCeeccEEEEEecCCC----cEEEEEEE
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDELP----VQIIVTIY   81 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~v~~~~----~~L~~~V~   81 (527)
                      ...++|.|+.|.+|+-.. .|.--|||.+.+-       .+++.|++..++..|.+||+|.|-+.+..    -.|.|.|.
T Consensus      1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred             cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence            456889999999997654 6778899999862       23446889999999999999999975432    34999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      |+.-...|..+|.+.+.|.++  ...-..|++|..
T Consensus      1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            988777789999999999998  444568999964

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=5.2e-05  Score=74.34  Aligned_cols=99  Identities=18%  Similarity=0.287  Sum_probs=78.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~   83 (527)
                      ....+.|++++|..|..+|.+|-+||||..++..     -+.+|.+.+++++|.|++.|.+++...   ...+.|.|||+
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            4556779999999999999999999999998742     235799999999999999999987543   45699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEE
Q 009741           84 DIIWKSTVLGSVIVTVESEGQTGAVWY  110 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~~~~~w~  110 (527)
                      +..+..+++|-+...+.........|+
T Consensus       311 ~~G~s~d~~GG~~~g~~rr~~v~~h~g  337 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGGYRRGEVHKHWG  337 (362)
T ss_pred             CCCcCccCCCcccccccccchhhcCcc
Confidence            998788899887766555443333443

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.53  E-value=0.00021  Score=75.21  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=101.4

Q ss_pred             EEeeeecCCCCCeeccEEEEEe-cCCCcEEEEEEEEcCCC----CCCceeEEEEEEcccCCCcccEEEEccCCC----ce
Q 009741           48 RFSSMVPGSRYPMWGEEFNFSV-DELPVQIIVTIYDWDII----WKSTVLGSVIVTVESEGQTGAVWYTLDSPS----GQ  118 (527)
Q Consensus        48 ~~T~~~~~t~nP~W~e~f~f~v-~~~~~~L~~~V~d~d~~----~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~----G~  118 (527)
                      .+|+++.+++||.|.+.|.+.. .+..+.|++.+++.+..    ..++|+|++...++.+.........|..+.    |.
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~  122 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGS  122 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCc
Confidence            3799999999999999998874 45567899999998753    457899999999998833222222222111    22


Q ss_pred             EEEEEEEeecccCccccccCccchhcccccccccCCCceeccCCcccccccccCccc----------------ceeEeEE
Q 009741          119 VCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDE----------------FVELSYS  182 (527)
Q Consensus       119 i~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~~F~lp~~e----------------~l~~~f~  182 (527)
                        +.|.+..+.....+       ...+..++..+++++++..++++|..+++.-.++                +.|..|.
T Consensus       123 --g~iti~aee~~~~~-------~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~  193 (529)
T KOG1327|consen  123 --GTITISAEEDESDN-------DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS  193 (529)
T ss_pred             --ccEEEEeecccccC-------ceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc
Confidence              22333322222221       1112222346788899999999999999754333                5677777


Q ss_pred             EeeeeccccceeEEeecceEEEEeccCCc
Q 009741          183 CVIERSFLYHGRMYVSAWHICFHSNAFSR  211 (527)
Q Consensus       183 c~l~~~~~~~Gr~yis~~~~cF~s~~~g~  211 (527)
                      ..++  -+|.+..-.+...+|++.+..|.
T Consensus       194 i~~~--~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  194 ISLQ--SLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             cchh--hhcccCCCCceEEEEeccCCCCC
Confidence            7777  66777777777788888877653

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.50  E-value=2.2e-05  Score=86.46  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=85.2

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEE-ec---------CCCcEEEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS-VD---------ELPVQIIVTIY   81 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~-v~---------~~~~~L~~~V~   81 (527)
                      ..+.++++|.+|+.|...+..+.+|||+.+..-++.+.|.++.++++|.|+++..|. +.         .....+.|+||
T Consensus       204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y  283 (1105)
T KOG1326|consen  204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY  283 (1105)
T ss_pred             hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence            456677888999999999999999999999999999999999999999999999886 21         12344889999


Q ss_pred             EcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 009741           82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l-~~~~~~w~~L~  113 (527)
                      |.+..+.++|+|+......-. ..+...|+++-
T Consensus       284 d~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~  316 (1105)
T KOG1326|consen  284 DLDRSGINEFKGRKKQRPYVMVQCPALKWVPTM  316 (1105)
T ss_pred             hhhhhchHHhhcccccceEEEecCCccceEEee
Confidence            999999999999987655544 35677899885

>PLN02964 phosphatidylserine decarboxylase

Probab=97.11  E-value=0.0008  Score=73.63  Aligned_cols=83  Identities=14%  Similarity=0.275  Sum_probs=69.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEE-EEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAI-ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~-v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~   90 (527)
                      .|.+.+++++|+    ++   ..|||.. +.++.+.++|.+.++|+||+||+...|.+... ....+|.|||++.+++++
T Consensus        53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~  125 (644)
T PLN02964         53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT  125 (644)
T ss_pred             cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence            678889999987    33   3588765 56788999999999999999999988887542 333799999999999999


Q ss_pred             eeEEEEEEcccC
Q 009741           91 VLGSVIVTVESE  102 (527)
Q Consensus        91 ~iG~~~i~l~~l  102 (527)
                      ++|.++++|..+
T Consensus       126 lv~~~e~~~t~f  137 (644)
T PLN02964        126 LVGYCELDLFDF  137 (644)
T ss_pred             hhhheeecHhhc
Confidence            999999988776

>PF14470 bPH_3: Bacterial PH domain

Probab=97.10  E-value=0.012  Score=48.24  Aligned_cols=86  Identities=19%  Similarity=0.200  Sum_probs=67.3

Q ss_pred             cCcccceeEeEEEeeee-ccccceeEEeecceEEEEecc-CCceeEEEEecccceeeeecccccccCcEEEEEecCCCCC
Q 009741          171 LLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH  248 (527)
Q Consensus       171 lp~~e~l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~~-~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~  248 (527)
                      |.++|.++....|.+.. .....|-+.+|++.+.|+... +|......+|+++|.+|+..++. +.+.|.|.+       
T Consensus         1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~-------   72 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET-------   72 (96)
T ss_pred             CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence            46789999999998762 234579999999999999765 77788999999999999999765 456788887       


Q ss_pred             CCCCCCCCCCceeEEEeeeechHHHH
Q 009741          249 GVPPLGSPDGRVRYKFASFWNRNHAL  274 (527)
Q Consensus       249 ~~~~~~~~~~~~~~~f~sf~~r~~~~  274 (527)
                               +..++.|.++ ..+++-
T Consensus        73 ---------~~~~~~i~~i-~k~~~~   88 (96)
T PF14470_consen   73 ---------NGEKIKIDNI-QKGDVK   88 (96)
T ss_pred             ---------CCEEEEEEEc-CHHHHH
Confidence                     2468888888 444443

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.00017  Score=70.76  Aligned_cols=93  Identities=18%  Similarity=0.204  Sum_probs=75.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEe--cCC--CcEEEEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYD   82 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~~~V~d   82 (527)
                      ....+.+++..|.+|++++..+..|||+.+.+..     .+.+|++..+++||.|+|+.....  .+.  ...+++.|.|
T Consensus        91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd  170 (362)
T KOG1013|consen   91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD  170 (362)
T ss_pred             hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeecc
Confidence            3456789999999999999999999999988742     235788999999999999877662  221  2348889999


Q ss_pred             cCCCCCCceeEEEEEEcccCCC
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQ  104 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~  104 (527)
                      .+.+...+++|+..+.+..+.+
T Consensus       171 n~~~~~~~sqGq~r~~lkKl~p  192 (362)
T KOG1013|consen  171 NDKKTHNESQGQSRVSLKKLKP  192 (362)
T ss_pred             CcccccccCcccchhhhhccCh
Confidence            9999889999999988887743

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.77  E-value=0.0021  Score=67.89  Aligned_cols=82  Identities=24%  Similarity=0.325  Sum_probs=66.6

Q ss_pred             EEeecCCCCCCCCCCCcEEEEEEC--C----eEEEeeeecCCCCCeeccEEEEEe-----cCCCcEEEEEEEEcCCCCCC
Q 009741           21 LAAKNLIGANLNGTSDPYAIITCG--S----EKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQIIVTIYDWDIIWKS   89 (527)
Q Consensus        21 i~A~~L~~~d~~g~~dPyv~v~~~--~----~~~~T~~~~~t~nP~W~e~f~f~v-----~~~~~~L~~~V~d~d~~~~d   89 (527)
                      ++|++|.++|.++++|||..+.-.  .    ..++|++++++++|.|.+ |.+..     .++...+.+.+||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            668899999999999999998732  1    234899999999999954 44442     24467799999999999999


Q ss_pred             ceeEEEEEEcccCC
Q 009741           90 TVLGSVIVTVESEG  103 (527)
Q Consensus        90 ~~iG~~~i~l~~l~  103 (527)
                      +++|.+..++..+.
T Consensus       222 ~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQ  235 (529)
T ss_pred             CceeEecccHHHhc
Confidence            99999999988873

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.00093  Score=66.80  Aligned_cols=103  Identities=14%  Similarity=0.237  Sum_probs=82.8

Q ss_pred             CceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCe-----EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEE-cC
Q 009741           12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD-WD   84 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d-~d   84 (527)
                      ..|.+.|.|++|++|..+.- ...++|||.|++-..     +.+|+...+++.|.+.+...|.-..+...|.++||. +.
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            47889999999999987653 336899999997422     347899999999988888888877777889999996 44


Q ss_pred             CCCCCceeEEEEEEcccCC---CcccEEEEccC
Q 009741           85 IIWKSTVLGSVIVTVESEG---QTGAVWYTLDS  114 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l~---~~~~~w~~L~~  114 (527)
                      .+-++.|+|.+.+-+.+++   .....||.|.+
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            5556789999999999983   35678999975

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=96.57  E-value=0.0043  Score=52.26  Aligned_cols=86  Identities=22%  Similarity=0.354  Sum_probs=58.4

Q ss_pred             eeEeEEEeeee-ccccceeEEeecceEEEEec---------------cCCceeEEEEecccceeeeecccccccCcEEEE
Q 009741          177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINPAITII  240 (527)
Q Consensus       177 l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~---------------~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~  240 (527)
                      ++.++.|.+-. ...+.|.+.++.++++|..+               .-.......+|+++|..|.+..-.+-..||+|-
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF   81 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF   81 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence            45678899887 45589999999999999976               333467788999999999987754444599999


Q ss_pred             EecCCCCCCCCCCCCCCCce-eEEEeeeechHHHHHH
Q 009741          241 LRMGAGGHGVPPLGSPDGRV-RYKFASFWNRNHALRQ  276 (527)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~-~~~f~sf~~r~~~~~~  276 (527)
                      +.+              |+. -+.|.+-..||++++.
T Consensus        82 ~~d--------------g~s~f~~F~~~~~R~~v~~~  104 (106)
T PF14844_consen   82 FSD--------------GRSYFFNFESKKERDEVYNK  104 (106)
T ss_dssp             ETT--------------S-EEEEE-SSHHHHHHHHCC
T ss_pred             EcC--------------CcEEEEEcCCHHHHHHHHHh
Confidence            853              332 2334455667776643

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.24  E-value=0.0037  Score=49.81  Aligned_cols=92  Identities=21%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCc--EEE--EEECC-eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC
Q 009741           17 KLELLAAKNLIGANLNGTSDP--YAI--ITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK   88 (527)
Q Consensus        17 ~V~vi~A~~L~~~d~~g~~dP--yv~--v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~~~   88 (527)
                      .++++.+++|.-....| -+|  |+.  +.+.. -..+|....+..||.|.|+|.|.+..   ....|.|.|+.  ...+
T Consensus         2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence            57889999986543322 234  332  23333 34588888999999999999998642   24569999998  4456


Q ss_pred             CceeEEEEEEcccCC-CcccEEEE
Q 009741           89 STVLGSVIVTVESEG-QTGAVWYT  111 (527)
Q Consensus        89 d~~iG~~~i~l~~l~-~~~~~w~~  111 (527)
                      .+.||.+.+.+++++ .....|.+
T Consensus        79 Ke~iG~~sL~l~s~geeE~~HW~e  102 (103)
T cd08684          79 KRTIGECSLSLRTLSTQETDHWLE  102 (103)
T ss_pred             cceeeEEEeecccCCHHHhhhhhc
Confidence            779999999999995 34556754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=96.16  E-value=0.77  Score=41.64  Aligned_cols=149  Identities=13%  Similarity=0.116  Sum_probs=102.7

Q ss_pred             eeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecC-CC-----CCCcceeEeEEE
Q 009741          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK-SP-----IYPRDTAMTESQ  414 (527)
Q Consensus       341 ~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~-~~-----~gpk~~~~~~~Q  414 (527)
                      ...||+|++++|.+|.+  ..||..-++..+..+..+..-...++ + ....+.-..|-. -|     +-+..-.+.+++
T Consensus         4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~~-g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e   79 (159)
T PF10698_consen    4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDGD-G-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE   79 (159)
T ss_pred             EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcCC-e-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence            46899999999988875  67888888888887777777666654 3 333333333321 11     444456677777


Q ss_pred             EEEEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHH
Q 009741          415 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE  494 (527)
Q Consensus       415 ~~~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~  494 (527)
                      +..... +..+..+.....+    |....+.....++. +..+|++.+.   ..|+-. =.++-++||+.+.+...+.++
T Consensus        80 ~w~~~~-~g~~~g~~~~~~~----G~P~~~~G~~~L~~-~~~gt~~~~~---g~v~v~-VPlvGgkiE~~v~~~~~~~~~  149 (159)
T PF10698_consen   80 TWTPLD-DGRRTGTFTVSIP----GAPVSISGTMRLRP-DGGGTRLTVE---GEVKVK-VPLVGGKIEKAVAENLRKLLE  149 (159)
T ss_pred             EEecCC-CCeEEEEEEEEec----CceEEEEEEEEEec-CCCCEEEEEE---EEEEEE-EccccHHHHHHHHHHHHHHHH
Confidence            774333 3456655555544    55689999999999 5677988888   666432 246889999999988888888


Q ss_pred             HHHHHHHHH
Q 009741          495 LMLETARSY  503 (527)
Q Consensus       495 ~~~~~~~~~  503 (527)
                      .--+.+.+.
T Consensus       150 ~e~~~~~~w  158 (159)
T PF10698_consen  150 AEQEFTAEW  158 (159)
T ss_pred             HHHHHHHhh
Confidence            777766654

The function is not known.

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=95.95  E-value=0.0093  Score=60.40  Aligned_cols=112  Identities=11%  Similarity=0.160  Sum_probs=76.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEecCCC------------cEEE
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDELP------------VQII   77 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~------------~~L~   77 (527)
                      .|.+.|+++.+++......-.|-|+++.+     ..++.+|.+++++.+|.|+|.|.+.+....            ..++
T Consensus       368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            45677778777755332223467888764     234558999999999999999999975421            1289


Q ss_pred             EEEEEcCCC-CCCceeEEEEEEcccCCC--cccEEEEccC----CCceEEEEEEEe
Q 009741           78 VTIYDWDII-WKSTVLGSVIVTVESEGQ--TGAVWYTLDS----PSGQVCLHIKTI  126 (527)
Q Consensus        78 ~~V~d~d~~-~~d~~iG~~~i~l~~l~~--~~~~w~~L~~----~~G~i~l~l~~~  126 (527)
                      |++|++..+ .+|.++|.+.+.|..|..  .....++|..    -+|.+.+.+++.
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            999998765 458899999999998833  2345667643    135555555544

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=95.30  E-value=0.24  Score=39.98  Aligned_cols=83  Identities=12%  Similarity=0.252  Sum_probs=61.0

Q ss_pred             CCcEEEEEECCeEE-EeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741           35 SDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (527)
Q Consensus        35 ~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~  113 (527)
                      .+..+++.+++... +|.-.+ ..+..|++.|.++++. .+.|.|.||-+|-   ..+.|-..+.|.+...  ....+|.
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~~--~~~~~le   81 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDERH--EVQLDME   81 (98)
T ss_pred             cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhcc--cceeccc
Confidence            67788888887544 554433 3578999999999976 7889999998864   3466777788888532  4566777


Q ss_pred             CCCceEEEEEEE
Q 009741          114 SPSGQVCLHIKT  125 (527)
Q Consensus       114 ~~~G~i~l~l~~  125 (527)
                      | .|.+..++++
T Consensus        82 p-qg~l~~ev~f   92 (98)
T cd08687          82 P-QLCLVAELTF   92 (98)
T ss_pred             c-ccEEEEEEEe
Confidence            5 7888777776

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=94.85  E-value=0.39  Score=48.97  Aligned_cols=111  Identities=19%  Similarity=0.262  Sum_probs=84.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC--------CCcEEEEEEEEcC-CC
Q 009741           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II   86 (527)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~--------~~~~L~~~V~d~d-~~   86 (527)
                      +.|.|++|++.+...   ...-.+..++++....|..+.++-.|.|+.....+++.        ...+|++++|-.| ..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            568999999987652   33456667789999999999999999999998887642        3566999999998 55


Q ss_pred             CCCceeEEEEEEcccC---C----CcccEEEEccCC-------CceEEEEEEEeecc
Q 009741           87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKLP  129 (527)
Q Consensus        87 ~~d~~iG~~~i~l~~l---~----~~~~~w~~L~~~-------~G~i~l~l~~~~~~  129 (527)
                      +..+.+|.+.++|...   .    .....||+|.+-       +-++.+.|.++...
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~  135 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS  135 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence            6678999999999887   2    245679999653       23455666666444

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=94.43  E-value=0.089  Score=51.65  Aligned_cols=114  Identities=13%  Similarity=0.121  Sum_probs=79.1

Q ss_pred             CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009741           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~--~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (527)
                      ...|.|.+.++.+++|+-...  +-.-+-||++..+.+ ..+|.+......-.|.|+|..++.+ ...+.+-||.|+.-.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            457999999999999965432  445688999988754 4577777777888999999999875 577899999999866


Q ss_pred             CCceeEEEEEEcccC-CCcccEEE--EccCCCceEEEEEEEe
Q 009741           88 KSTVLGSVIVTVESE-GQTGAVWY--TLDSPSGQVCLHIKTI  126 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l-~~~~~~w~--~L~~~~G~i~l~l~~~  126 (527)
                      .+.+.-..-+.+..+ ....+.-+  .|.+ .|++-+++.+.
T Consensus       127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~~~  167 (442)
T KOG1452|consen  127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLPLA  167 (442)
T ss_pred             hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecccC
Confidence            666532223333333 22233333  3444 68877777665

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.24  E-value=0.11  Score=57.55  Aligned_cols=93  Identities=17%  Similarity=0.208  Sum_probs=68.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeeeec-CCCCCeecc-EEEEE-ec-CCCcEEEEEEE
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVP-GSRYPMWGE-EFNFS-VD-ELPVQIIVTIY   81 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~-~t~nP~W~e-~f~f~-v~-~~~~~L~~~V~   81 (527)
                      .+.+.|+||++.-|..+.    ...||.|.+-+       ..++|+++. ++.||+|+| .|.|. |- +.-..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            678999999999986654    44899998621       335788885 469999995 48887 32 22345999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009741           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~  114 (527)
                      +...    .|||+-.++++.+..+ -+.+.|..
T Consensus       778 eEgg----K~ig~RIlpvd~l~~G-Yrhv~LRs  805 (1189)
T KOG1265|consen  778 EEGG----KFIGQRILPVDGLNAG-YRHVCLRS  805 (1189)
T ss_pred             ccCC----ceeeeeccchhcccCc-ceeEEecC
Confidence            9765    5999999999999654 44555644

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=94.12  E-value=0.65  Score=41.69  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             CCceEEEEEEEEeecCCCCCC--CCCCCcEEEE--EECCeEEEeeeecCCCCCeeccEEEEEecCC--------------
Q 009741           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAII--TCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL--------------   72 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~--~g~~dPyv~v--~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~--------------   72 (527)
                      +....|.+.|..++-...--.  .+..+....+  .+++++++|+.+..+.+|.|+|.|.|+++..              
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            456778899998874322111  1344444444  4578999999999999999999999997532              


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009741           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (527)
Q Consensus        73 ~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l  102 (527)
                      ..+|++-|--.|..+...++|.-.+....+
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~v  115 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKV  115 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHH
Confidence            244888888878776778899888888776

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=93.44  E-value=1.8  Score=41.44  Aligned_cols=155  Identities=10%  Similarity=0.148  Sum_probs=86.5

Q ss_pred             eeee-ecCHHHHHHHhcCCCCchHHHHHHHc-CCcceEeccceecCCCCCeEEEEEEE-EecCCCCCCcceeEeEEEEEE
Q 009741          341 NDVF-PCTAEQFFTLLFSDDSKFTNEYRAAR-KDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHAV  417 (527)
Q Consensus       341 ~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~-~~~~~~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~~  417 (527)
                      ..++ +++++.+|+++.+  ..+..++-... ....+..  .   ++ +.   .+.|. ...-.|+.++.--.  .....
T Consensus        52 ~~~~~~~s~e~~~~~l~D--~~~r~~Wd~~~~e~~~ie~--~---d~-~~---~i~y~~~~~P~pvs~RDfV~--~r~~~  118 (222)
T cd08871          52 SAIFPDVPAETLYDVLHD--PEYRKTWDSNMIESFDICQ--L---NP-NN---DIGYYSAKCPKPLKNRDFVN--LRSWL  118 (222)
T ss_pred             EEEeCCCCHHHHHHHHHC--hhhhhhhhhhhceeEEEEE--c---CC-CC---EEEEEEeECCCCCCCCeEEE--EEEEE
Confidence            3456 5899999998864  33322222221 1112221  1   11 11   22232 22223456654222  12222


Q ss_pred             EcCCCCeEEEEEeeeeCCCCCCCe-EE---EEEEEEEEeecCCceEEEEEEeeeeEEEeec--ceeeeeeehhhHHHHHH
Q 009741          418 LSPDKKIFVFETVQQAHDVPFGSY-FE---IHGRWHLETIAENSSTIDIKVVSAGAHFKKW--CVIQFKIKTGAVNKYKK  491 (527)
Q Consensus       418 ~~~~~~~~vi~~~~~~~dvPygd~-F~---v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~--t~~K~~Ie~~~~~~~~~  491 (527)
                      .. ++.++++......+++|-..- -+   ....|.|++.++++|++...   +.++..++  +|+-..+-+.+.-...+
T Consensus       119 ~~-~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~---~~~Dp~G~IP~~lvN~~~~~~~~~~l~  194 (222)
T cd08871         119 EF-GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYV---TQNDPKGSLPKWVVNKATTKLAPKVMK  194 (222)
T ss_pred             eC-CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEE---EecCCCCCcCHHHHHHHHHHHhHHHHH
Confidence            22 245566666666677886554 22   34579999998899999998   88888773  34333333344445666


Q ss_pred             HHHHHHHHHHHHHhhcCCCCC
Q 009741          492 EVELMLETARSYIKICTSGGE  512 (527)
Q Consensus       492 ~~~~~~~~~~~~l~~~~~~~~  512 (527)
                      .+.+.+....+..+.+++...
T Consensus       195 ~l~k~~~~y~~~~~~~~~~~~  215 (222)
T cd08871         195 KLHKAALKYPEWKAKNNPEFK  215 (222)
T ss_pred             HHHHHHHHHHHHHHhcCCCCC
Confidence            666777777777777777665

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.08  E-value=0.82  Score=41.41  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=58.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCeeccEEEEEe--cCC--CcEEEEEEEEcC
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~~~V~d~d   84 (527)
                      .++|+|+++.++...+   .++-||.+.+  +++..    .|..+.. .++.|||...|++  .+.  ..+|.|+||+..
T Consensus         9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            5789999999887543   4678888754  43322    3444443 6799999999985  332  456999999976


Q ss_pred             CCC----CCceeEEEEEEcccC
Q 009741           85 IIW----KSTVLGSVIVTVESE  102 (527)
Q Consensus        85 ~~~----~d~~iG~~~i~l~~l  102 (527)
                      ...    ....+|.+.++|-+.
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECC
Confidence            421    235699999988775

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=93.03  E-value=3.9  Score=36.02  Aligned_cols=117  Identities=18%  Similarity=0.252  Sum_probs=73.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---EEeeee-cCCCCCeeccEEEEEec----C-----CCcEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMV-PGSRYPMWGEEFNFSVD----E-----LPVQII   77 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~-~~t~nP~W~e~f~f~v~----~-----~~~~L~   77 (527)
                      .....+.|.|.+..+++.    .....|+....+...   ..|... ..+-.-.|++.|.+.+.    .     ....+.
T Consensus         4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~   79 (143)
T PF10358_consen    4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK   79 (143)
T ss_pred             eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence            346788899999998866    234455565555443   344433 33556789999988742    1     123489


Q ss_pred             EEEEEcCCCCCCceeEEEEEEcccCC----CcccEEEEccCC-CceEEEEEEEeecccC
Q 009741           78 VTIYDWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSP-SGQVCLHIKTIKLPVN  131 (527)
Q Consensus        78 ~~V~d~d~~~~d~~iG~~~i~l~~l~----~~~~~w~~L~~~-~G~i~l~l~~~~~~~~  131 (527)
                      |.|+....-++...+|.+.|+|.+..    .....-++|... .....+.|++....+.
T Consensus        80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELR  138 (143)
T ss_pred             EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence            99988753333368999999999982    234456667553 4444555555544443

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.03  E-value=0.72  Score=42.49  Aligned_cols=86  Identities=22%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeccEEEEEe--cCC--CcEEEEEEEEcC
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~~~V~d~d   84 (527)
                      .+.|+|+.+.+|...  ....+-||.+.+  +++.    ..|.....+..+.|+|.+.|++  .+.  ..+|.|.||+..
T Consensus         9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            578999999998751  234566776543  4432    2455555556799999999985  332  456999999975


Q ss_pred             CCC----------------CCceeEEEEEEcccC
Q 009741           85 IIW----------------KSTVLGSVIVTVESE  102 (527)
Q Consensus        85 ~~~----------------~d~~iG~~~i~l~~l  102 (527)
                      ...                .+..||.+.++|-+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            422                245788888877665

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=92.91  E-value=0.39  Score=40.16  Aligned_cols=89  Identities=18%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             cceeEeEEEeeee-ccccceeEEeecceEEEEecc----C-Cc---------eeEEEEecccceeeeecccccccCcEEE
Q 009741          175 EFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SR---------QMKVIIPIGDIDEIQRSQHAFINPAITI  239 (527)
Q Consensus       175 e~l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~~----~-g~---------~~~~~i~~~~i~~i~k~~~~~~~~~i~i  239 (527)
                      |+++-+..|.+-. -....|++-||..+++|....    + +.         .....+++++|.+|-+..-.+=..|++|
T Consensus         1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi   80 (108)
T cd01201           1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL   80 (108)
T ss_pred             CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence            4567788888877 556789999999999999631    1 11         1234789999999988774332349999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009741          240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  279 (527)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~  279 (527)
                      -...              +  .-.|-+|-+++...+++..
T Consensus        81 F~~d--------------~--~~~f~~F~~~~~~k~vv~~  104 (108)
T cd01201          81 FLAS--------------R--TSIFFAFPDQNAVKKVVYA  104 (108)
T ss_pred             EEeC--------------C--ceEEEEeCcHHHHHHHHhh
Confidence            8852              2  3356678888877766654

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.64  E-value=1.3  Score=40.03  Aligned_cols=87  Identities=21%  Similarity=0.279  Sum_probs=57.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeccEEEEEe--cCC--CcEEEEEEEEcC
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~~~V~d~d   84 (527)
                      .++|.+....++...+ ....+-||.+.+  +++.    ..|.......++.|||...|++  .+.  ...|.|+||+.+
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            4677788877775521 234566666654  3332    2344444346899999999985  332  456999999987


Q ss_pred             CCC--CCceeEEEEEEcccC
Q 009741           85 IIW--KSTVLGSVIVTVESE  102 (527)
Q Consensus        85 ~~~--~d~~iG~~~i~l~~l  102 (527)
                      ..+  ++..||.+.++|-+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            654  467899999998775

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=91.63  E-value=7.9  Score=33.46  Aligned_cols=72  Identities=13%  Similarity=0.045  Sum_probs=44.8

Q ss_pred             CeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHHHHHH
Q 009741          423 KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARS  502 (527)
Q Consensus       423 ~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~  502 (527)
                      ..+.+.....    +.+.......+|.|++. +++|+|...   ..+.+..  .++.+.....-.-..+.+...++.+++
T Consensus        72 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~gT~v~~~---~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~  141 (144)
T cd05018          72 ESYTITGEGK----GGAGFVKGTARVTLEPD-GGGTRLTYT---ADAQVGG--KLAQLGSRLIDGAARKLINQFFENLAS  141 (144)
T ss_pred             cEEEEEEEEc----CCCceEEEEEEEEEEec-CCcEEEEEE---EEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            4566654332    12556789999999998 678999998   8887653  344444444444445555555555555


Q ss_pred             HH
Q 009741          503 YI  504 (527)
Q Consensus       503 ~l  504 (527)
                      .+
T Consensus       142 ~~  143 (144)
T cd05018         142 KI  143 (144)
T ss_pred             hh
Confidence            43

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.45  E-value=0.92  Score=41.15  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             CCCCcEEEEEE--CCeE----EEeeeecCCCCCeeccEEEEEec--C--CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009741           33 GTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (527)
Q Consensus        33 g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l  102 (527)
                      ..++-||.+.+  ++..    ..|....-+..+.|||...|++.  +  ....|.|+||+.+..++...+|.+.++|-+.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            35677887764  3332    24555555677899999999863  3  2456999999988766678999999998775

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=91.30  E-value=10  Score=35.16  Aligned_cols=131  Identities=12%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEE-EecCCCCCCcceeEeEEEEE
Q 009741          338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA  416 (527)
Q Consensus       338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~  416 (527)
                      .-...+++++++++|+++..  ...+.++........+.    +..++ +   ..+.|. .....|+.++..-.  ..+.
T Consensus        43 ~k~~~~i~~s~e~v~~vi~d--~e~~~~w~~~~~~~~vi----e~~~~-~---~~i~~~~~~~p~pvs~Rdfv~--~~~~  110 (195)
T cd08876          43 FKAVAEVDASIEAFLALLRD--TESYPQWMPNCKESRVL----KRTDD-N---ERSVYTVIDLPWPVKDRDMVL--RSTT  110 (195)
T ss_pred             EEEEEEEeCCHHHHHHHHhh--hHhHHHHHhhcceEEEe----ecCCC-C---cEEEEEEEecccccCCceEEE--EEEE
Confidence            34456899999999999864  44444444433222221    11111 1   122332 22112233332211  2222


Q ss_pred             EEcCCCCeEEEEEeeeeCCCCCCC----eEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehh
Q 009741          417 VLSPDKKIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTG  484 (527)
Q Consensus       417 ~~~~~~~~~vi~~~~~~~dvPygd----~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~  484 (527)
                      ....++..++|.......++|-..    .+.....|.|++.++++|+|...   ..+.+.. .+.+.+|...
T Consensus       111 ~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~---~~~dp~g-~iP~~lv~~~  178 (195)
T cd08876         111 EQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQ---AYADPGG-SIPGWLANAF  178 (195)
T ss_pred             EEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEE---EEeCCCC-CCCHHHHHHH
Confidence            222213456665554433355332    35677889999999999999999   8887754 3444444443

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=91.19  E-value=11  Score=33.84  Aligned_cols=143  Identities=11%  Similarity=0.099  Sum_probs=85.6

Q ss_pred             eeeeeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEE
Q 009741          338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA  416 (527)
Q Consensus       338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~  416 (527)
                      ...+.+.++|+++||.++.. ...++.+.. ..-+.-++..++|..    ++..|.++|...     ||   .....|++
T Consensus         6 ~~~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~----gGSIk~~~f~~~-----~~---~~~~Kekv   72 (151)
T PF00407_consen    6 LEVEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGP----GGSIKKWTFGPG-----GP---FKYVKEKV   72 (151)
T ss_dssp             EEEEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSST----TT-EEEEEEETT-----SS---EEEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCC----CCeEEEEEecCC-----CC---cceeEEEE
Confidence            45567889999999999876 344555544 444566677788875    468899988752     44   23446788


Q ss_pred             EEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehh-hHHHHHHHHHH
Q 009741          417 VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTG-AVNKYKKEVEL  495 (527)
Q Consensus       417 ~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~-~~~~~~~~~~~  495 (527)
                      ...++... .+..+..--| +.+++.+-.....+.+.++++|.++..     ++|.+-      -+.. ..+...+.+..
T Consensus        73 e~~D~~~~-~~~y~viEGd-~l~~~~~~~~~~~~~~~~~g~~v~k~t-----~~Ye~~------~~~~~~p~~~~~~~~~  139 (151)
T PF00407_consen   73 EAIDEENK-TITYTVIEGD-VLGDYKSFKSTIQKIPKGDGGCVVKWT-----IEYEKK------GEDVPPPEKYLDFAVG  139 (151)
T ss_dssp             EEEETTTT-EEEEEEEEET-TGTTTEEEEEEEEEEEETTSCEEEEEE-----EEEEES------STSCHHHHHHHHHHHH
T ss_pred             EeecCCCc-EEEEEEEecc-ccccEEEEEEEEEecCCCCCceEEEEE-----EEEEec------CCCCCCcHHHHHHHHH
Confidence            76544322 2223332233 345555555555555777777877766     444441      1222 34556666788


Q ss_pred             HHHHHHHHHhh
Q 009741          496 MLETARSYIKI  506 (527)
Q Consensus       496 ~~~~~~~~l~~  506 (527)
                      +++.+..+|-+
T Consensus       140 ~~K~ieayLla  150 (151)
T PF00407_consen  140 MFKAIEAYLLA  150 (151)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            88888877754

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=90.67  E-value=13  Score=35.12  Aligned_cols=141  Identities=13%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEe---cCCCCCCcceeEeEEE
Q 009741          338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSL---CKSPIYPRDTAMTESQ  414 (527)
Q Consensus       338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~---~~~~~gpk~~~~~~~Q  414 (527)
                      .-++.+++++++++|..++.| .....+       ++-.+...+.-+..+..++ +.|..-   ...++.++.  ....+
T Consensus        50 ~k~~~~i~~~~~~v~~~l~~d-~~~~~~-------Wd~~~~~~~~i~~~d~~~~-i~y~~~~~~~~~~vs~RD--fV~~r  118 (208)
T cd08868          50 FRLTGVLDCPAEFLYNELVLN-VESLPS-------WNPTVLECKIIQVIDDNTD-ISYQVAAEAGGGLVSPRD--FVSLR  118 (208)
T ss_pred             EEEEEEEcCCHHHHHHHHHcC-ccccce-------ecCcccceEEEEEecCCcE-EEEEEecCcCCCcccccc--eEEEE
Confidence            345679999999999988864 222111       1111111111111111222 344321   112344443  22223


Q ss_pred             EEEEcCCCCeEEEEEeeeeCCCCCCCeE----EEEEEEEEEeecC--CceEEEEEEeeeeEEEeecceeeeeeehhhHHH
Q 009741          415 HAVLSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNK  488 (527)
Q Consensus       415 ~~~~~~~~~~~vi~~~~~~~dvPygd~F----~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~  488 (527)
                      +.... ++.++++.....-+..|-..-|    ...+.|.|++.++  ++|.+...   +.++..+|- -+.++.+.+...
T Consensus       119 ~~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~---~~~Dp~G~i-P~~lvN~~~~~~  193 (208)
T cd08868         119 HWGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWL---LNTDLKGWL-PQYLVDQALASV  193 (208)
T ss_pred             EEEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEE---EEECCCCCC-cceeeehhhHHH
Confidence            33333 3334444333333556644433    3558899999865  68999888   888777642 233444444444


Q ss_pred             HHHHHH
Q 009741          489 YKKEVE  494 (527)
Q Consensus       489 ~~~~~~  494 (527)
                      ..+.+.
T Consensus       194 ~~~~~~  199 (208)
T cd08868         194 LLDFMK  199 (208)
T ss_pred             HHHHHH
Confidence            333333

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=89.32  E-value=19  Score=33.67  Aligned_cols=151  Identities=14%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCC-CCCCcceeEeEEEEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKS-PIYPRDTAMTESQHAV  417 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~-~~gpk~~~~~~~Q~~~  417 (527)
                      -+..+++.++.++|..++.| .....++........+.    +..++ +.  +-+-+..+... |+.|+.--..  .+..
T Consensus        48 k~~~~v~~~~~~~~~~~~~d-~~~r~~Wd~~~~~~~~i----e~~~~-~~--~i~~~~~~~~~~p~~~RDfv~~--r~~~  117 (206)
T smart00234       48 RAVGVVPMVCADLVEELMDD-LRYRPEWDKNVAKAETL----EVIDN-GT--VIYHYVSKFVAGPVSPRDFVFV--RYWR  117 (206)
T ss_pred             EEEEEEecChHHHHHHHHhc-ccchhhCchhcccEEEE----EEECC-CC--eEEEEEEecccCcCCCCeEEEE--EEEE
Confidence            44578888888877766654 33322222222211111    11111 22  22223333223 5666542211  1122


Q ss_pred             EcCCCCeEEEEEeeeeCCCCC-CCe---EEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHH
Q 009741          418 LSPDKKIFVFETVQQAHDVPF-GSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEV  493 (527)
Q Consensus       418 ~~~~~~~~vi~~~~~~~dvPy-gd~---F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~  493 (527)
                      ...++.++++..+...+..|- ..+   ......|+|++.+++.|++...   ..++..+| +-+.++...+.......+
T Consensus       118 ~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~---~~~D~~G~-iP~~lvn~~~~~~~~~~~  193 (206)
T smart00234      118 ELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWV---SHADLKGW-LPHWLVRSLIKSGLAEFA  193 (206)
T ss_pred             EcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEE---EEEecCCC-ccceeehhhhhhhHHHHH
Confidence            233444444444555566663 333   3456899999999999999999   99988876 346666666666666666


Q ss_pred             HHHHHHHHHH
Q 009741          494 ELMLETARSY  503 (527)
Q Consensus       494 ~~~~~~~~~~  503 (527)
                      +.|.+.+++.
T Consensus       194 ~~~~~~~~~~  203 (206)
T smart00234      194 KTWVATLQKH  203 (206)
T ss_pred             HHHHHHHHHH
Confidence            6665555543

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=89.20  E-value=12  Score=34.84  Aligned_cols=145  Identities=14%  Similarity=0.229  Sum_probs=80.5

Q ss_pred             eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEE---EEecCCCCCCcceeEeEEEEE
Q 009741          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAF---RSLCKSPIYPRDTAMTESQHA  416 (527)
Q Consensus       340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y---~~~~~~~~gpk~~~~~~~Q~~  416 (527)
                      +..+++.++.++|..++.+.. -|.   ....    ...--+.-++ +   ..+.|   ..|.-.|+.|+.--+  .+..
T Consensus        50 ~~~~v~~~~~~~~~~~~~~~~-~Wd---~~~~----~~~~le~~~~-~---~~i~~~~~~~~~~~p~~~RDfv~--~~~~  115 (206)
T PF01852_consen   50 AEGVVPASPEQVVEDLLDDRE-QWD---KMCV----EAEVLEQIDE-D---TDIVYFVMKSPWPGPVSPRDFVF--LRSW  115 (206)
T ss_dssp             EEEEESSCHHHHHHHHHCGGG-HHS---TTEE----EEEEEEEEET-T---EEEEEEEEE-CTTTTSSEEEEEE--EEEE
T ss_pred             EEEEEcCChHHHHHHHHhhHh-hcc---cchh----hheeeeecCC-C---CeEEEEEecccCCCCCCCcEEEE--EEEE
Confidence            456889999989998887533 111   1111    1111111122 2   22333   233222555543222  2222


Q ss_pred             EEcCCCCeEEEEEeeeeCCCCC--CCeEEEE---EEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHH
Q 009741          417 VLSPDKKIFVFETVQQAHDVPF--GSYFEIH---GRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK  491 (527)
Q Consensus       417 ~~~~~~~~~vi~~~~~~~dvPy--gd~F~v~---~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~  491 (527)
                      ....++.++++......+..|-  .++-+++   ..|+|++.+++.|++...   +.++...|.. +.++..-+.....+
T Consensus       116 ~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~---~~~D~~G~iP-~~~~n~~~~~~~~~  191 (206)
T PF01852_consen  116 RKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYV---SQVDPKGWIP-SWLVNMVVKSQPPN  191 (206)
T ss_dssp             EECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEE---EEEESSSSSH-HHHHHHHHHHHHHH
T ss_pred             EEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEE---EEECCCCCCh-HHHHHHHHHHhHHH
Confidence            2245566777777777777774  5555543   679999999999999999   8888766443 33444444445555


Q ss_pred             HHHHHHHHHHH
Q 009741          492 EVELMLETARS  502 (527)
Q Consensus       492 ~~~~~~~~~~~  502 (527)
                      .++.+.+.+++
T Consensus       192 ~~~~~~~~~~~  202 (206)
T PF01852_consen  192 FLKNLRKALKK  202 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555444

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=88.97  E-value=2.1  Score=39.31  Aligned_cols=90  Identities=14%  Similarity=0.136  Sum_probs=60.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----Eeeeec----CCCCCeeccEEEEEec--C--CCcEEEE
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP----GSRYPMWGEEFNFSVD--E--LPVQIIV   78 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~~----~T~~~~----~t~nP~W~e~f~f~v~--~--~~~~L~~   78 (527)
                      ...+.|+|.++.+++........+-|+.+.+  +++.-    .|+...    -...+.|||...|++.  +  ...+|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3467888999999977654446778888754  43322    333221    1236789999999852  3  2456999


Q ss_pred             EEEEcCCCC---------CCceeEEEEEEcccC
Q 009741           79 TIYDWDIIW---------KSTVLGSVIVTVESE  102 (527)
Q Consensus        79 ~V~d~d~~~---------~d~~iG~~~i~l~~l  102 (527)
                      ++|+....+         .+..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999976543         356899999888765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=88.67  E-value=9.6  Score=34.85  Aligned_cols=122  Identities=15%  Similarity=0.169  Sum_probs=66.1

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (527)
                      -...++++|+++++.+++..  ....++-.     .+.....-..-+.+.......|..|  .|+.|+.--+...  ...
T Consensus        42 k~~~~i~~~~~~v~~~l~d~--~~~~~w~~-----~~~~~~vl~~~~~~~~i~~~~~~~p--~p~~~Rdfv~~~~--~~~  110 (193)
T cd00177          42 KAEGVIPASPEQVFELLMDI--DLRKKWDK-----NFEEFEVIEEIDEHTDIIYYKTKPP--WPVSPRDFVYLRR--RRK  110 (193)
T ss_pred             EEEEEECCCHHHHHHHHhCC--chhhchhh-----cceEEEEEEEeCCCeEEEEEEeeCC--CccCCccEEEEEE--EEE
Confidence            45678999999999998862  22121111     1111111111111112222233333  3466665332222  222


Q ss_pred             cCCCCeEEEEEeeeeCCCCCC-CeEEEEE---EEEEEeecCCceEEEEEEeeeeEEEeec
Q 009741          419 SPDKKIFVFETVQQAHDVPFG-SYFEIHG---RWHLETIAENSSTIDIKVVSAGAHFKKW  474 (527)
Q Consensus       419 ~~~~~~~vi~~~~~~~dvPyg-d~F~v~~---r~~i~~~~~~~~~l~v~~~~~~V~f~K~  474 (527)
                      ..++.++++......+.+|-. ++-+...   -|+|++.++++|++...   +.++...+
T Consensus       111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~---~~~D~~g~  167 (193)
T cd00177         111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYV---LQVDPKGS  167 (193)
T ss_pred             cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEE---EeeCCCCC
Confidence            224556666555554446654 5555554   49999998999999999   88887764

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=87.35  E-value=19  Score=33.71  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEE-EEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQ-HAV  417 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q-~~~  417 (527)
                      -.+.+++.++++++.+++..           ++.+|-.+..++.-+..+....-+-|..+...|+.++.  ....+ ...
T Consensus        47 K~~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RD--fV~~r~~~~  113 (197)
T cd08869          47 RASTEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRD--YVVLRTWRT  113 (197)
T ss_pred             EEEEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCce--EEEEEEEEe
Confidence            45678999999999888631           23333333333332111111222334443323444432  22221 222


Q ss_pred             EcCCCCeEEEEEeeee-CCCCCCC---eEEEEEEEEEEeecCCceEEEEEEeeeeEEEee
Q 009741          418 LSPDKKIFVFETVQQA-HDVPFGS---YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK  473 (527)
Q Consensus       418 ~~~~~~~~vi~~~~~~-~dvPygd---~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K  473 (527)
                      ..+++.+++....... ..+|- +   .+...+.|.|++.++++|+|...   +.++..+
T Consensus       114 ~~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~---~~~Dp~G  169 (197)
T cd08869         114 DLPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGSGKSRVTHI---CRVDLRG  169 (197)
T ss_pred             cCCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCCCCeEEEEE---EEECCCC
Confidence            2333434333333322 25555 5   35566889999999999999999   9998877

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=85.97  E-value=16  Score=34.62  Aligned_cols=141  Identities=10%  Similarity=0.084  Sum_probs=72.1

Q ss_pred             eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCC---CCCcceeEeEEEEE
Q 009741          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSP---IYPRDTAMTESQHA  416 (527)
Q Consensus       340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~---~gpk~~~~~~~Q~~  416 (527)
                      .+.++++++++++..+|.|-... .+.       +-.+..-+.-...+..+ .+.|..-...|   +.++.-  ...+..
T Consensus        53 ~e~~i~~~~~~l~~~l~~d~e~~-~~W-------~~~~~~~~vl~~id~~~-~i~y~~~~p~p~~~vs~RD~--V~~~~~  121 (209)
T cd08905          53 LEVVVDQPLDNLYSELVDRMEQM-GEW-------NPNVKEVKILQRIGKDT-LITHEVAAETAGNVVGPRDF--VSVRCA  121 (209)
T ss_pred             EEEEecCCHHHHHHHHHhchhhh-cee-------cccchHHHHHhhcCCCc-eEEEEEeccCCCCccCccce--EEEEEE
Confidence            67899999999998888752211 110       00000000101101111 23333221222   444432  223333


Q ss_pred             EEcCCCCeEEEEEeeeeCCCCCCC-e---EEEEEEEEEEeecC--CceEEEEEEeeeeEEEeecceeeeeeehhhHHHHH
Q 009741          417 VLSPDKKIFVFETVQQAHDVPFGS-Y---FEIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK  490 (527)
Q Consensus       417 ~~~~~~~~~vi~~~~~~~dvPygd-~---F~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~  490 (527)
                      ... ++.++++......+.+|--. +   ....+.|.|++.++  ++|++...   +.++..++ +-+.++.+...+...
T Consensus       122 ~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~---~~~DpkG~-iP~~lvN~~~~~~~~  196 (209)
T cd08905         122 KRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWL---LSIDLKGW-LPKSIINQVLSQTQV  196 (209)
T ss_pred             EEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEE---EeecCCCC-CCHHHHHHHhHHhHH
Confidence            333 34566666666556665333 3   33668999999976  78999988   88777554 334455544444444


Q ss_pred             HHHHHH
Q 009741          491 KEVELM  496 (527)
Q Consensus       491 ~~~~~~  496 (527)
                      +.+..+
T Consensus       197 ~~~~~L  202 (209)
T cd08905         197 DFANHL  202 (209)
T ss_pred             HHHHHH
Confidence            444433

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=85.42  E-value=21  Score=30.34  Aligned_cols=102  Identities=11%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (527)
                      ....++++|++.+|+++-.- .. +..+...  ...+.   +.......+..|.+.+.      .|   ..  ..+++..
T Consensus         4 ~~~~~i~a~~~~V~~~l~d~-~~-~~~w~~~--~~~~~---~~~~~~~~g~~~~~~~~------~g---~~--~~~~i~~   65 (140)
T cd07821           4 TVSVTIDAPADKVWALLSDF-GG-LHKWHPA--VASCE---LEGGGPGVGAVRTVTLK------DG---GT--VRERLLA   65 (140)
T ss_pred             EEEEEECCCHHHHHHHHhCc-Cc-hhhhccC--cceEE---eecCCCCCCeEEEEEeC------CC---CE--EEEEehh
Confidence            45679999999999999752 22 2232221  11221   21111112344443322      22   11  2234433


Q ss_pred             cCCC-CeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEE
Q 009741          419 SPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK  463 (527)
Q Consensus       419 ~~~~-~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~  463 (527)
                      ..+. ..+.+.....  +.|+   ......|.|+..++++|+|...
T Consensus        66 ~~~~~~~i~~~~~~~--~~~~---~~~~~~~~~~~~~~~~t~v~~~  106 (140)
T cd07821          66 LDDAERRYSYRIVEG--PLPV---KNYVATIRVTPEGDGGTRVTWT  106 (140)
T ss_pred             cCccCCEEEEEecCC--CCCc---ccceEEEEEEECCCCccEEEEE
Confidence            2222 4555443321  2343   3457899999998878888877

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=85.35  E-value=7.1  Score=36.07  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=42.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---EEeeeecCCCCCeeccEEEEEe--cC--CCcEEEEEEEEcC
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK---RFSSMVPGSRYPMWGEEFNFSV--DE--LPVQIIVTIYDWD   84 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~---~~T~~~~~t~nP~W~e~f~f~v--~~--~~~~L~~~V~d~d   84 (527)
                      .++|+|..+..+ ..+......-||.+.+  +...   .+|....-+.+|.|||...|++  .+  ...+|.|+||+..
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            466777777643 2222223345555533  3332   2566666667899999998885  33  2456999999974

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=85.01  E-value=2.4  Score=34.40  Aligned_cols=50  Identities=20%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             cceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEEEEE
Q 009741          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL  241 (527)
Q Consensus       191 ~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~  241 (527)
                      -.|++|+|.+.+||--+.-.....+.+|+++|..++...+.+ ..+-+|+.
T Consensus        36 q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~-~sSpKI~l   85 (89)
T PF11605_consen   36 QNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL-KSSPKIIL   85 (89)
T ss_dssp             SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT-SSS-EEEE
T ss_pred             cCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc-CCCCeEEE
Confidence            479999999999997554333447999999999996665443 33444443

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function

Probab=83.79  E-value=3.1  Score=45.54  Aligned_cols=83  Identities=14%  Similarity=0.280  Sum_probs=61.3

Q ss_pred             eEEEeeeeccccceeEEee----cceEEEEeccC------------CceeEEEEecccceeeeeccccccc---------
Q 009741          180 SYSCVIERSFLYHGRMYVS----AWHICFHSNAF------------SRQMKVIIPIGDIDEIQRSQHAFIN---------  234 (527)
Q Consensus       180 ~f~c~l~~~~~~~Gr~yis----~~~~cF~s~~~------------g~~~~~~i~~~~i~~i~k~~~~~~~---------  234 (527)
                      .|.|-|..+.   |.+||+    .=.++|.+...            .....+.||+.||.+++|..+.+.-         
T Consensus       520 ~F~AR~~Gkk---G~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~  596 (642)
T PF11696_consen  520 EFPARYKGKK---GHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWAL  596 (642)
T ss_pred             eeeeecCCcc---ceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeec
Confidence            4889998764   999999    34689987511            2356799999999999999876321         


Q ss_pred             ------CcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHH
Q 009741          235 ------PAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT  280 (527)
Q Consensus       235 ------~~i~i~-~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~~  280 (527)
                            .+++|+ ++              .| ..|.++-...||+.|+.|-.+
T Consensus       597 g~kEv~DGL~I~g~~--------------~g-~~y~lTA~~~RDeLFNRLiAm  634 (642)
T PF11696_consen  597 GEKEVVDGLVIVGDE--------------PG-QEYHLTAMPRRDELFNRLIAM  634 (642)
T ss_pred             CCcccccceEEeccC--------------CC-CEEEEEecchHHHHHHHHHhc
Confidence                  244444 32              34 588999999999999877653

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=83.11  E-value=12  Score=33.10  Aligned_cols=54  Identities=30%  Similarity=0.374  Sum_probs=39.8

Q ss_pred             EeeeecCC-CCCeeccEEEEEe--cC--CCcEEEEEEEEcCCCCCC----ceeEEEEEEcccC
Q 009741           49 FSSMVPGS-RYPMWGEEFNFSV--DE--LPVQIIVTIYDWDIIWKS----TVLGSVIVTVESE  102 (527)
Q Consensus        49 ~T~~~~~t-~nP~W~e~f~f~v--~~--~~~~L~~~V~d~d~~~~d----~~iG~~~i~l~~l  102 (527)
                      .|....-+ .++.|+|...|++  .+  ....|.|+||..+.....    ..||-+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            55555555 7999999999985  33  255699999998876555    6899999998776

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=82.73  E-value=32  Score=30.10  Aligned_cols=72  Identities=10%  Similarity=-0.008  Sum_probs=42.6

Q ss_pred             CCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEee--cceeeeeeehhhHHHHHHHHHHHHHH
Q 009741          422 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK--WCVIQFKIKTGAVNKYKKEVELMLET  499 (527)
Q Consensus       422 ~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K--~t~~K~~Ie~~~~~~~~~~~~~~~~~  499 (527)
                      ...+.+.-.  -.+.+-+....+...|.++. .+++|+|.+.   ..+.+..  ..+++.+|.+    -..+.++.+++.
T Consensus        70 ~~~~~~~~~--g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~---~~~~~~g~l~~l~~~~v~~----~~~~~~~~~~~~  139 (146)
T cd07823          70 ARRAVLEAT--GKDARGQGTAEATVTLRLSP-AGGGTRVTVD---TDLALTGKLAQFGRGGIGD----VAGRLLAQFAAN  139 (146)
T ss_pred             CcEEEEEEE--EecCCCcceEEEEEEEEEEe-cCCcEEEEEE---EEEEEeeEhHHhChhHHHH----HHHHHHHHHHHH
Confidence            345554422  23344455668899999998 5578999999   8887765  3455444444    333334444444


Q ss_pred             HHHH
Q 009741          500 ARSY  503 (527)
Q Consensus       500 ~~~~  503 (527)
                      +++.
T Consensus       140 l~~~  143 (146)
T cd07823         140 LEAR  143 (146)
T ss_pred             HHHH
Confidence            4433

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=82.56  E-value=14  Score=34.65  Aligned_cols=54  Identities=15%  Similarity=0.098  Sum_probs=38.7

Q ss_pred             EEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-CC---CceeEEEEEEcc
Q 009741           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-WK---STVLGSVIVTVE  100 (527)
Q Consensus        47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~-~~---d~~iG~~~i~l~  100 (527)
                      ..+|-+...+.+|.|+|++.+.+..   ....|.|++++.... .+   ...+|-+.++|-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            4578888889999999999998753   345699999886421 12   245777777665

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=82.25  E-value=17  Score=35.30  Aligned_cols=80  Identities=10%  Similarity=0.042  Sum_probs=52.1

Q ss_pred             CeEEEEEeeeeCCCCCC-CeEEEEE---------------EEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhH
Q 009741          423 KIFVFETVQQAHDVPFG-SYFEIHG---------------RWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV  486 (527)
Q Consensus       423 ~~~vi~~~~~~~dvPyg-d~F~v~~---------------r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~  486 (527)
                      .++++..+..-+.+|-. ++-++..               .|.+++ .+.+|++...   +.++.-+|- -.++|...+.
T Consensus       136 ~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~---~~~dPgG~i-P~wvvn~~~k  210 (235)
T cd08872         136 TWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYV---ANVNPGGWA-PASVLRAVYK  210 (235)
T ss_pred             eEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEE---EEeCCCCCc-cHHHHHHHHH
Confidence            34666666666777766 6666764               255566 4678888887   777665532 2556666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 009741          487 NKYKKEVELMLETARSYIKIC  507 (527)
Q Consensus       487 ~~~~~~~~~~~~~~~~~l~~~  507 (527)
                      .+.-+.++.+-..+++..+.+
T Consensus       211 ~~~P~~l~~~~~~~~~~~~~~  231 (235)
T cd08872         211 REYPKFLKRFTSYVQEKTKGK  231 (235)
T ss_pred             hhchHHHHHHHHHHHHhcCCC
Confidence            777777777777777766544

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins

Probab=81.75  E-value=39  Score=31.93  Aligned_cols=141  Identities=11%  Similarity=0.112  Sum_probs=71.2

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEecccee-cCCCCCeEEEEEEEEec---CCCCCCcceeEeEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHA-ADEYDGQVREVAFRSLC---KSPIYPRDTAMTESQ  414 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~-~~~~~~~~R~~~y~~~~---~~~~gpk~~~~~~~Q  414 (527)
                      -++.+++++++++|+.|+..  ....+     -+.++....+-. -++   .+ .|.|..--   ...++|+.  ....+
T Consensus        49 k~egvi~~~~e~v~~~l~~~--e~r~~-----Wd~~~~~~~iie~Id~---~T-~I~~~~~~~~~~~~vspRD--fV~vr  115 (204)
T cd08904          49 RVEGIIPESPAKLIQFMYQP--EHRIK-----WDKSLQVYKMLQRIDS---DT-FICHTITQSFAMGSISPRD--FVDLV  115 (204)
T ss_pred             EEEEEecCCHHHHHHHHhcc--chhhh-----hcccccceeeEEEeCC---Cc-EEEEEecccccCCcccCce--EEEEE
Confidence            56789999999999998752  11111     111222222211 111   11 23443211   12366764  22233


Q ss_pred             EEEEcCCCCeEEEEEeeeeCCCC-CCCe---EEEEEEEEEEeecC--CceEEEEEEeeeeEEEeecceeeeeeehhhHHH
Q 009741          415 HAVLSPDKKIFVFETVQQAHDVP-FGSY---FEIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNK  488 (527)
Q Consensus       415 ~~~~~~~~~~~vi~~~~~~~dvP-ygd~---F~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~  488 (527)
                      +.....++.+++....+.-+..| =.++   +..-+-|++.+..+  ++|++..+   ..++..+| +-+++|++.--..
T Consensus       116 ~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~---~~~DlkG~-lP~~vv~~~~~~~  191 (204)
T cd08904         116 HIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMF---VQPELRGN-LSRSVIEKTMPTN  191 (204)
T ss_pred             EEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEE---EEeCCCCC-CCHHHHHHHhHHH
Confidence            33232334444444444444444 2333   44556799999876  47999888   87766543 3366666554444


Q ss_pred             HHHHHHHH
Q 009741          489 YKKEVELM  496 (527)
Q Consensus       489 ~~~~~~~~  496 (527)
                      +.+.+..+
T Consensus       192 ~~~f~~~~  199 (204)
T cd08904         192 LVNLILDA  199 (204)
T ss_pred             HHHHHHHH
Confidence            44444443

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=80.83  E-value=41  Score=31.90  Aligned_cols=146  Identities=12%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             eeeeeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEec---CCCCCCcceeEeEE
Q 009741          338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLC---KSPIYPRDTAMTES  413 (527)
Q Consensus       338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~---~~~~gpk~~~~~~~  413 (527)
                      .-.+.++++|++.+|..+|.|-... .+.. ......-+..     .   +... .+.|....   ..|+.++.  ....
T Consensus        51 fk~~~~v~~~~~~l~~~ll~D~~~~-~~W~~~~~~~~vi~~-----~---~~~~-~i~Y~v~~p~~~~pv~~RD--fV~~  118 (209)
T cd08906          51 FILKAFMQCPAELVYQEVILQPEKM-VLWNKTVSACQVLQR-----V---DDNT-LVSYDVAAGAAGGVVSPRD--FVNV  118 (209)
T ss_pred             EEEEEEEcCCHHHHHHHHHhChhhc-cccCccchhhhheee-----c---cCCc-EEEEEEccccccCCCCCCc--eEEE
Confidence            3567889999999998777643211 1100 0111111111     1   1112 23453221   12344433  2222


Q ss_pred             EEEEEcCCCCeEEEEEeeeeCCCCCC-CeEEEE---EEEEEEe--ecCCceEEEEEEeeeeEEEeecceeeeeeehhhHH
Q 009741          414 QHAVLSPDKKIFVFETVQQAHDVPFG-SYFEIH---GRWHLET--IAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVN  487 (527)
Q Consensus       414 Q~~~~~~~~~~~vi~~~~~~~dvPyg-d~F~v~---~r~~i~~--~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~  487 (527)
                      ....... +.++++..+...+.+|-- ++-+++   +.|.+.+  .++++|++...   +.++..+ .+=+.+|.+...+
T Consensus       119 r~~~~~~-~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~---~~~Dp~G-~lP~~lvN~~~~~  193 (209)
T cd08906         119 RRIERRR-DRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWI---LNTDLKG-RLPRYLIHQSLAA  193 (209)
T ss_pred             EEEEecC-CcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE---EecCCCC-CCCHHHHHHHHHH
Confidence            3333333 335566666665666643 444444   4566665  46788999888   7777655 3335566665555


Q ss_pred             HHHHHHHHHHHHH
Q 009741          488 KYKKEVELMLETA  500 (527)
Q Consensus       488 ~~~~~~~~~~~~~  500 (527)
                      ...+.++.+=+.+
T Consensus       194 ~~~~~~~~LR~~~  206 (209)
T cd08906         194 TMFEFASHLRQRI  206 (209)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555444443

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=80.38  E-value=15  Score=34.16  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=38.6

Q ss_pred             EEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC--CceeEEEEEEccc
Q 009741           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK--STVLGSVIVTVES  101 (527)
Q Consensus        47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~~~--d~~iG~~~i~l~~  101 (527)
                      ..+|-+...+.+|.|+|++.+.+..   ....|.|++++.....+  ...+|-+.++|-+
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            4578888999999999999999754   24569999988543211  1456666666643

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	527
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		6e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-05
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		7e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		9e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-04

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138
Query: 119 VCLHI 123
           + LHI
Sbjct: 139 IRLHI 143

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 278

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 40  AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 137

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVES--EGQ 104
            + VT++D D       LG V + + S  +GQ
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++  G    P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
           ++   I+D D+  +   +G   + +E
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLE 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	527
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	7e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-25
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	7e-18
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-17
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	6e-17
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-16
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	8e-16
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	8e-16
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-15
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	8e-15
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-14
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	7e-14
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-13
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-10
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	3e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-13
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	7e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	7e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-09
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	9e-13
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-12
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-12
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-12
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-12
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-12
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	4e-12
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	9e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-11
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-10
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	5e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-09
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-09
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	5e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	6e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-08
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	7e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	5e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  102 bits (255), Expect = 7e-26
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELP 73
            +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E  
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70

Query: 74  VQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
            ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 71  TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  101 bits (252), Expect = 2e-25
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLDS------PSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD        SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138

Query: 119 VCLHIK 124
           + LHI 
Sbjct: 139 IRLHIS 144

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 88.5 bits (220), Expect = 4e-21
 Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIK 124
            + VT++D D       LG V + + S        Y L +        G + L + 
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 80.3 bits (198), Expect = 7e-18
 Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF 67
                   +++ +++AK            PY  +T   + + +     +  P W +    
Sbjct: 30  GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV-----ESEGQTGAVWYTLDSPSGQ 118
            V  +  ++   ++    +    +LG+  + +      +  +   V  TL     +
Sbjct: 90  IVTPVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES----EGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E       +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 76.2 bits (188), Expect = 6e-17
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNLI---GANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +   +       +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D     ++ +T+ D + +     LG+   TV S   G+   V +  +    ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFN-QVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           I+L +L AKNL   +     DP+A I      +   +  V  +  P W + ++  V +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-T 65

Query: 74  VQIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGA-VWYTLDSP----------SGQV 119
             I +++++   I K   +  LG V +   +  +     +  LD             GQ+
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQI 125

Query: 120 CLHIKT 125
            + ++T
Sbjct: 126 VVSLQT 131

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 73.9 bits (181), Expect = 8e-16
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 15  LIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEKRFSSMV-PGSRYPMWGE 63
            +++ +  A  L               +   DPY  ++    +   +     +  P + E
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 64  EFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES------EGQTGAVWYTLDSPSG 117
           EF  +V +    + + ++    +     + +  +  +          T   W  L+ P G
Sbjct: 90  EFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-PEG 147

Query: 118 QVCLHIK 124
           +V + I 
Sbjct: 148 KVFVVIT 154

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++ + +A N+      G  DP   +    EK+ +  V     P+W E   F +  +P+
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 75  Q----IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS--------GQVC 120
                + + + D++ I ++ ++G+  V ++     Q+ ++ Y L S            + 
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATID 126

Query: 121 LHIK 124
           L I 
Sbjct: 127 LVIG 130

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +   +
Sbjct: 36  VVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95

Query: 72  LPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 96  KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 141

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 70.9 bits (174), Expect = 8e-15
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSM------VPGSRYPMWGEEFNFS 68
           ++++ ++A   L   ++ G SDPY  +T                +  S  P W EE  F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAV-----WYTLDSPS---- 116
           V     +++  ++D + + +   LG V V    + +E            + L   S    
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140

Query: 117 --GQVCLHIK 124
             G + L + 
Sbjct: 141 VKGYLRLKMT 150

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 69.9 bits (171), Expect = 3e-14
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFS 68
           +++++++A   L   ++ G SDPY  +T             +  +  S  P W EE  F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS----------- 114
           V     +I+  ++D + + +   LG V V    + +E       YT              
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128

Query: 115 PSGQVCLHIK 124
             G + L + 
Sbjct: 129 VKGYLRLKMT 138

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 67.8 bits (166), Expect = 7e-14
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 20/118 (16%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII--------------TCGSEKRFSSMVPGSRYPMWGEE 64
            +L A+NL+  + NG SDP+  +                   KR +  V  S  P W + 
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82

Query: 65  FNF---SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
             +   S+++L  + + VT++D+D    +  LG V++ + S         WY L   +
Sbjct: 83  VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 13/144 (9%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   F V 
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV-WY-TLDSPSGQVCL-HIK 124
            + +  V + + + D+D I  + V+G   V  E+    G   W   L +P   V   H  
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWH-- 271

Query: 125 TIKLPVNASRVMNGYAGANARRRA 148
            +      S    G  G + +  +
Sbjct: 272 QLVEEKTLSSFTKGGKGLSEKENS 295

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           +L A +L   + NG SDPY  I       +K  + +   +  P++ E F FSV   EL  
Sbjct: 26  ILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 85

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIK 124
           + +  ++YD+D   +  ++G V++    E         +W  +     +     +
Sbjct: 86  RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGE 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
           + + + +YD+D   K  ++G   V + +   G     W  L S
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 65.9 bits (161), Expect = 7e-13
 Identities = 20/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++   +L   + NG SDP+  +          K  + +   +  P + EEF + +   +
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
           L    + ++++D+DI   +  +G   + + ++G+    WY  L +   ++ 
Sbjct: 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 65.1 bits (159), Expect = 7e-13
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELP 73
            ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL 
Sbjct: 47  GIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 106

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115
            + + + +YD+D   K  ++G   V + +   G     W  L S 
Sbjct: 107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPG 55
               +  P       + + +L AKNL   ++ G SDPY  I         +K+ +++   
Sbjct: 140 CFSLRYVPTAG---KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 196

Query: 56  SRYPMWGEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-T 111
           +  P + E F+F V  +++  VQ++VT+ D+D I K+  +G V V   S G     W   
Sbjct: 197 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 256

Query: 112 LDSPSGQVC 120
           L +P   + 
Sbjct: 257 LANPRRPIA 265

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 25  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIKL 128
           + + + +YD+D   K  ++G   V + +   G     W  L S   +    +  I  
Sbjct: 85  KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICF 141

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 64.7 bits (158), Expect = 9e-13
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNF---SVDELP 73
           ++ A+ L   + +GTSDP+  I        K  + +   +  P W E F F     +++ 
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            +I+ + + D+D   ++  +G V + +      Q    W  L    
Sbjct: 92  QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++ A+NL   ++ GTSDPY  +         EK+ +     +  P++ E F F +  ++
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           L    II+T+ D D + ++ V+G + ++ +S       W   +  P   V 
Sbjct: 81  LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 26  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 82

Query: 62  GEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +  + L  + +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 83  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142

Query: 118 QVC 120
           Q+ 
Sbjct: 143 QIA 145

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F V  ++
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           +  VQ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 90  IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 24  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 83

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTL 112
              +++ +T++D   + +  S  LG +++ +E+        WY L
Sbjct: 84  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 128

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           ++ AK L   + NG +DPY  +        S K  +  +  +R P+W E   +   + ++
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113
           +  + + +++ D D    +  +G    +++         + + 
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNIC 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 27  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 86

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +++ +T++D   + +  S  LG +++ +E+        WY L +  
Sbjct: 87  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHD 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 62.4 bits (152), Expect = 9e-12
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGS 56
           ++   D Q      + L ++  K LI     GT DPY  I           + +  VP  
Sbjct: 18  LRLSIDAQDRV---LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDC 73

Query: 57  RYPMWGEEFNFSV--DELPVQIIVTIYDWDIIWK-STVLGSVIV---TVESEGQTGAVWY 110
           R P + E F F V  ++   +++VT+++     + S ++G +     ++ +  +  + WY
Sbjct: 74  RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWY 133

Query: 111 TLDSPSGQVCLHIKT 125
            L         H+K 
Sbjct: 134 YLLGEHLGRTKHLKV 148

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 33  GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92
              + Y  +   + K  +  V GS  P W ++F F ++ L + + V +++  +IW  T++
Sbjct: 21  EKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWD-TMV 78

Query: 93  GSVIVTVE----SEGQTGAVWYTLDSPS----GQVCLHIK 124
           G+V + +     S  +    W TLDS +     ++C    
Sbjct: 79  GTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKD 118

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DEL 72
             L A      N +G  D Y   +     GS +  +++     +  W E     +  +EL
Sbjct: 31  TRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
           P   + +T+   D   + +V G + + ++        A W  L +  
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT-----CGSEKRF-SSMVPGSRYPMWGEEFNFSV--DE 71
           ++   NL              +        +   F +  +  S   ++ E F  S+    
Sbjct: 49  IIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS 114
           L  + + V +   D       LG   +    V   G+    WY L S
Sbjct: 109 LHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 20  LLAAKNLIGANL-NGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
           +     L  A+     S+PY             KR +S+   +  P++ E   + +    
Sbjct: 29  VKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL 88

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
           L  + +  +++      ++T LG   + ++S    +       L    
Sbjct: 89  LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 6   GDPQTNSAYLIKLELLAAKNLIGANLNGTSD---PYAIITCGSEKRFSSMVPGSRYPMWG 62
           G P  +      L LL    +  A  +G  +    Y  +   + +  +  V GS  P W 
Sbjct: 1   GSPGISGGGGGILSLLCVG-VKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWE 58

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV----ESEGQTGAVWYTLDSPSGQ 118
           ++F F ++ L + + V +++  +IW  T++G+V + +    +S  +    W TLDS +  
Sbjct: 59  QDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM 117

Query: 119 VCLHIKTIKLP 129
               I   K P
Sbjct: 118 ADSEICGTKDP 128

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV---D 70
            ++  K+L+  +     +PY        T  + KR + +   +R P + E   +S    +
Sbjct: 25  MVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83

Query: 71  ELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            L  + + +++   + + ++  LG + + ++     +    WY L + +
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT 132

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            + A +NLI  + +G SDPY  +        S +R + +   +  P++ + F+FSV   E
Sbjct: 29  VVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG 117
           +  + + V + +          +LG V+V + SE   +    WY L   SG
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANL-NGTSDPYAIIT-----CGSEKRFSSMVPG 55
           +Q   + +      +++E++ A++L        T  PY  +          K+ + +   
Sbjct: 21  IQIGMEDKKGQ---LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK 77

Query: 56  SRYPMWGEEFNFSVDELPVQIIVTIY-DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112
           +  P++ +   F        + V ++ D+  +     +G   + +E          WY L
Sbjct: 78  TLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

Query: 113 DSPSGQV 119
             PS  V
Sbjct: 138 FPPSSLV 144

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 20  LLAAKNLIGAN-------LNGTSDPYA---IITCGSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ A++L               S+PY    ++      + + +   ++ P++ E + F +
Sbjct: 32  VIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEI 91

Query: 70  --DELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL---DSPSG 117
              E   + + +T+ D+D   +  V+G V V +      + G  W  L      SG
Sbjct: 92  PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSSG 147

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 20  LLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV---DEL 72
           +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F      ++
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 73  PVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDSP 115
               +  TI  +D   +  ++G V++    +E       +   + S 
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 54.1 bits (129), Expect = 7e-08
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 35  SDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS-VDELPVQ-IIVTIYDWDIIWKSTVL 92
           +D Y  +  G ++  + +V  +  P W ++ +F  V       + V ++D D  W   +L
Sbjct: 414 TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLL 473

Query: 93  GSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLP 129
           GS   +  S      V   L+   G+V        LP
Sbjct: 474 GSCDRSPHSGFHE--VTCELN--HGRVKFSYHAKCLP 506

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 14  YLIKLELLAAKNLI---GANLNGTSDPYAII---TCGSEKRFSSMVPGSRYPMWGEEFNF 67
           +   + +L A  +      ++  T DPY  +   T    ++ +        P+W E F F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 68  SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
            +D     ++ +T+ D +       LG+   TV S                   
Sbjct: 78  ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM 130

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 30  NLNGTSDPYAIITCGSEKRFSSMVPGSRYP-MWGEEFNFSVDELPVQ---IIVTIYDWDI 85
            L G +D  A +T   +  +S ++        + E F + V     +   + + I+++  
Sbjct: 32  ELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91

Query: 86  IWKSTVLGSVIV 97
           ++ + ++G+  +
Sbjct: 92  VFSNKLIGTFRM 103

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 43.8 bits (102), Expect = 9e-05
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF----SSMVPGSRYPMWGEEFNF---- 67
           +KL ++ A+ L           Y  +                       WGE F F    
Sbjct: 13  LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQ 118
           +V  L + +           K+  +G V V V   +       WY +  P+G 
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 94/304 (30%)

Query: 25  NLIGANL---NGTSDPYAIITCGSEKRFSSMVPGS-----------RYPMWGEEFN-FSV 69
           ++I  ++     T D +  + C    + ++++  S            +    +  + F  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP 383

Query: 70  D-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-------EGQTGAVWYTLDSPSGQVCL 121
              +P  ++       +IW   +   V+V V         E Q      ++  PS  + L
Sbjct: 384 SAHIPTILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLEL 435

Query: 122 HIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV----------HQKPGPLQTIFNL 171
            +K          +++ Y   N  +    D   P  +          H K         L
Sbjct: 436 KVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 172 LPDEFVELSYSCVIERSFLYHG----------------RMYVSAWHICFHSNAFSRQMKV 215
               F++  +   +E+   +                  + Y    +IC +   + R +  
Sbjct: 493 FRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNA 547

Query: 216 IIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR 275
           I     +D + + +   I    T +LR+         L + D  + +          A +
Sbjct: 548 I-----LDFLPKIEENLICSKYTDLLRIA--------LMAEDEAI-F--------EEAHK 585

Query: 276 QLQR 279
           Q+QR
Sbjct: 586 QVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	527
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.81
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.81
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.8
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.79
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.78
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.78
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.77
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.76
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.75
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.75
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.71
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.7
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.7
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.7
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.69
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.69
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.69
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.69
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.69
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.68
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.67
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.67
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.67
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.67
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.66
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.66
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.65
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.65
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.65
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.64
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.64
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.63
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.63
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.62
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.59
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.56
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.56
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.55
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.53
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.47
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.42
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.41
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.4
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.36
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.22
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.17
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.98
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.95
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.94
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.93
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.88
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	93.53
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	92.81
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	91.04
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	90.86
2pcs_A	162	Conserved protein; structural genomics, unknown fu	90.23
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	90.08
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	88.65
3qsz_A	189	STAR-related lipid transfer protein; structural ge	88.02
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	86.6
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	86.01
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	85.74
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	85.44
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	85.39
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	84.85
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	84.78
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	83.46
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	82.86
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	81.87
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	81.59
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	80.07

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.81  E-value=6.2e-19  Score=157.63  Aligned_cols=119  Identities=29%  Similarity=0.482  Sum_probs=105.0

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC-
Q 009741            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-   86 (527)
Q Consensus         8 ~~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~-   86 (527)
                      +.+...+.|.|+|++|++|++++..|.+||||++.++.+.++|+++++++||.|||+|.|.+..+...|.|+|||++.. 
T Consensus        11 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           11 GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI   90 (148)
T ss_dssp             ----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred             cccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence            3444579999999999999999999999999999999999999999999999999999999987778899999999986 


Q ss_pred             ----------CCCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEEe
Q 009741           87 ----------WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (527)
Q Consensus        87 ----------~~d~~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~l~~~  126 (527)
                                +++++||++.++|.++......|++|.+      ..|+|+++|++.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHCcCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                      7899999999999999777789999974      238888887765

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=3e-19  Score=156.79  Aligned_cols=119  Identities=23%  Similarity=0.420  Sum_probs=107.5

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC
Q 009741            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK   88 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~   88 (527)
                      +....+.|.|+|++|++|++.+..|.+||||++.++.+..+|+++++++||.|||+|.|.+.+....|.|+|||++..++
T Consensus         8 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~   87 (133)
T 2ep6_A            8 DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKP   87 (133)
T ss_dssp             SCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEE
T ss_pred             ccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCC
Confidence            44678999999999999999999999999999999999999999999999999999999998777889999999999989


Q ss_pred             CceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEEee
Q 009741           89 STVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIK  127 (527)
Q Consensus        89 d~~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~l~~~~  127 (527)
                      +++||++.+++.++..+...|++|..      ..|+|++.+++..
T Consensus        88 ~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           88 PDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCeeEEEEEEHHHccCCCceEEEeecCCCCCccceEEEEEEEEEe
Confidence            99999999999999766789999964      2488888887753

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.80  E-value=2.5e-19  Score=161.14  Aligned_cols=114  Identities=15%  Similarity=0.222  Sum_probs=100.6

Q ss_pred             CCceEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCCcEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~----------~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~   79 (527)
                      ...|.|.|+|++|++|+++|.          .|.+||||++.++... .+|+++++++||.|||+|.|.+.+ ...|.|+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence            458999999999999999873          2679999999998766 589999999999999999999875 5689999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC--C----CcccEEEEccCCCceEEEEEEEe
Q 009741           80 IYDWDIIWKSTVLGSVIVTVESE--G----QTGAVWYTLDSPSGQVCLHIKTI  126 (527)
Q Consensus        80 V~d~d~~~~d~~iG~~~i~l~~l--~----~~~~~w~~L~~~~G~i~l~l~~~  126 (527)
                      |||++.+++|++||++.|+|.++  +    ...+.|++|.+ .|++++.+++.
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-~G~i~l~l~~~  156 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-EGKVFVVITLT  156 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-SCEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-CcEEEEEEEEE
Confidence            99999999999999999999987  2    44689999986 89999888874

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=2.5e-18  Score=152.09  Aligned_cols=120  Identities=18%  Similarity=0.319  Sum_probs=102.7

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 009741           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~d~d~   85 (527)
                      +...|.|.|+|++|++|+..+. |.+||||++.++.++++|+++++++||.|||+|.|.+..    ....|.|+|||++.
T Consensus         3 s~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            3 SGSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             SCBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            3567899999999999999998 999999999999999999999999999999999999864    25679999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEE---ccCC-----CceEEEEEEEeeccc
Q 009741           86 IWKSTVLGSVIVTVESE--GQTGAVWYT---LDSP-----SGQVCLHIKTIKLPV  130 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l--~~~~~~w~~---L~~~-----~G~i~l~l~~~~~~~  130 (527)
                      +++|++||++.++|.++  +...+.|+.   |...     .|++++++++.+.+.
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            99999999999999998  444578988   5432     277777777776443

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.78  E-value=1.6e-18  Score=152.61  Aligned_cols=121  Identities=21%  Similarity=0.369  Sum_probs=105.2

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009741            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (527)
                      .....+.|.|+|++|++|+..+..|.+||||++.++.+..+|++++ +++||.|||+|.|.+.+....|.|+|||++.++
T Consensus         5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCC
Confidence            3456899999999999999999999999999999998889999998 899999999999999876788999999999999


Q ss_pred             CCceeEEEEEEcccC---CCcccEEEEccC---CCceEEEEEEEeecc
Q 009741           88 KSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKLP  129 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l---~~~~~~w~~L~~---~~G~i~l~l~~~~~~  129 (527)
                      +|++||++.++|.++   +.....||+|..   ..|++++.+.+.+..
T Consensus        85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             CCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCC
Confidence            999999999999988   333578999962   236777777776543

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.78  E-value=4.6e-18  Score=152.84  Aligned_cols=118  Identities=19%  Similarity=0.333  Sum_probs=95.4

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEE
Q 009741            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d   82 (527)
                      .....+.|.|+|++|++|+.++..|.+||||++.+..      ..++|+++++++||.|||+|.|.+......|.|+|||
T Consensus        15 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d   94 (153)
T 3b7y_A           15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFD   94 (153)
T ss_dssp             CCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEE
Confidence            3467899999999999999999899999999999863      4679999999999999999999998767789999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCc--c------cEEEEccCC------CceEEEEEEEe
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQT--G------AVWYTLDSP------SGQVCLHIKTI  126 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~--~------~~w~~L~~~------~G~i~l~l~~~  126 (527)
                      ++.++++++||++.++|.++...  .      ..||+|.++      .|+|++++++.
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence            99999999999999999998321  1      489999653      37888877764

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.77  E-value=1.5e-18  Score=152.94  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=99.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCCcEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANLNGT-----------SDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~-----------~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~   79 (527)
                      ..|.|.|+|++|++|++++..+.           +||||++.++... .+|+++++++||.|||+|.|.+.+. ..|.|+
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~   82 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence            36899999999999999886544           9999999998765 5899999999999999999998764 789999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCC----cccEEEEccCCCceEEEEEEEee
Q 009741           80 IYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSPSGQVCLHIKTIK  127 (527)
Q Consensus        80 V~d~d~~~~d~~iG~~~i~l~~l~~----~~~~w~~L~~~~G~i~l~l~~~~  127 (527)
                      |||++.+++|++||++.+++.++..    ..+.|++|.+ .|++++.|++..
T Consensus        83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~i~l~l~~~~  133 (136)
T 1gmi_A           83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-CeEEEEEEEEEe
Confidence            9999999999999999999998832    2378999986 899999998874

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.76  E-value=9e-18  Score=154.71  Aligned_cols=119  Identities=20%  Similarity=0.314  Sum_probs=96.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEc
Q 009741           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW   83 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~   83 (527)
                      ....|.|.|+|++|++|+.++..|.+||||++.+..      ..++|+++++++||.|||+|.|.+......|.|+|||+
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~   83 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE   83 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEEC
Confidence            356799999999999999999999999999999864      56799999999999999999999987677899999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCc-cc-------EEEEccCC------CceEEEEEEEeec
Q 009741           84 DIIWKSTVLGSVIVTVESEGQT-GA-------VWYTLDSP------SGQVCLHIKTIKL  128 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~~-~~-------~w~~L~~~------~G~i~l~l~~~~~  128 (527)
                      +.++++++||++.|+|..+... ..       .||+|.++      .|.|++.|.+.+.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            9999999999999999998322 11       79999752      4888888888765

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.75  E-value=1e-17  Score=145.39  Aligned_cols=113  Identities=19%  Similarity=0.354  Sum_probs=96.2

Q ss_pred             ceEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeccEEEEEec-CCCcEEEEEEEEcCC
Q 009741           13 AYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI   85 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~~~V~d~d~   85 (527)
                      .+.|.|+|++|++|+++   +..|.+||||++.++.   ..++|+++++++||.|||+|.|.+. .....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58899999999999984   6678999999999974   6789999999999999999999985 345679999999998


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCCCceEEEEEEEee
Q 009741           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIK  127 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~l~~~~  127 (527)
                      . ++++||++.++|.++  +.....|++|.+ .|++.++|+++.
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-~~~g~i~~~le~  123 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ-VTEMVLEMSLEV  123 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT-TEEEEEEEEEEC
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcCC-CceEEEEEEEEe
Confidence            7 488999999999998  445578999986 566666666553

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.75  E-value=2.3e-17  Score=144.50  Aligned_cols=112  Identities=23%  Similarity=0.375  Sum_probs=95.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC-
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK-   88 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~-   88 (527)
                      ....|.|+|++|++|++++..|.+||||++.++.  ..++|+++++++||.|||+|.|.+... ..|.|+|||++..++ 
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKK   81 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCC
Confidence            4578999999999999999999999999999864  778999999999999999999998764 459999999998876 


Q ss_pred             --CceeEEEEEEcccC---CCcccEEEEccCC--------CceEEEEEE
Q 009741           89 --STVLGSVIVTVESE---GQTGAVWYTLDSP--------SGQVCLHIK  124 (527)
Q Consensus        89 --d~~iG~~~i~l~~l---~~~~~~w~~L~~~--------~G~i~l~l~  124 (527)
                        |++||++.+++..+   ......|++|..+        .|+|.++|.
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~  130 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ  130 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence              89999999998887   4445789999653        366666654

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.71  E-value=7.3e-17  Score=141.74  Aligned_cols=102  Identities=15%  Similarity=0.312  Sum_probs=90.1

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~d   82 (527)
                      ..+.|.|+|++|++|+. +..|.+||||++.+     .....+|+++++++||.|||+|.|. +..   ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            46889999999999987 77899999999998     3467899999999999999999999 753   34689999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      ++.++++++||++.++|.++  +.....||+|.+
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            99999999999999999998  355678999976

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.70  E-value=3.4e-17  Score=147.48  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=91.1

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      ..+.|.|.|++|++|++++..|.+||||++++..      .+++|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            4678999999999999999999999999999854      268999999999999999999998542   4579999999


Q ss_pred             cCCCCCCceeEEEEEEcccC---CCcccEEEEccC
Q 009741           83 WDIIWKSTVLGSVIVTVESE---GQTGAVWYTLDS  114 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l---~~~~~~w~~L~~  114 (527)
                      +|.++++++||++.++|.++   ......||+|.+
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             CCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            99999999999999999998   355678999863

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.70  E-value=1.4e-16  Score=146.04  Aligned_cols=117  Identities=12%  Similarity=0.220  Sum_probs=95.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~   90 (527)
                      ...+.|.|+|++|++|+..+..+.+||||++.++...++|+++++++||.|||+|.|.+.. ...|.|+|||++.+++|+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCc
Confidence            3578899999999999944445559999999999988999999999999999999999864 788999999999999999


Q ss_pred             eeEEEEEEcccCC---C----cccEEEEccCC------CceEEEEEEEeec
Q 009741           91 VLGSVIVTVESEG---Q----TGAVWYTLDSP------SGQVCLHIKTIKL  128 (527)
Q Consensus        91 ~iG~~~i~l~~l~---~----~~~~w~~L~~~------~G~i~l~l~~~~~  128 (527)
                      +||++.++|.++.   .    ....|++|..+      .|+|.+.|.+...
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            9999999999871   1    12569999653      2666665555543

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.70  E-value=6.2e-17  Score=143.70  Aligned_cols=104  Identities=23%  Similarity=0.420  Sum_probs=92.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d   84 (527)
                      ...+.|.|+|++|++|+..+..+.+||||++.+   +...++|+++++++||.|||+|.|.+...   ...|.|+|||++
T Consensus        31 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            356889999999999999998999999999998   45578999999999999999999997532   467999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      .++++++||++.++|.++  +.....|++|.+
T Consensus       111 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999999999999998  445778999975

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.69  E-value=1.3e-16  Score=143.29  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=91.8

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCC
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~   85 (527)
                      ..+.|.|+|++|++|+..+..+.+||||++.+   +....+|+++++++||.|||+|.|.+..   ....|.|+|||++.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            56789999999999999999999999999998   3557899999999999999999998753   25779999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      ++++++||++.++|.++  +...+.|++|.+
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            99999999999999998  455689999975

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.69  E-value=4.8e-17  Score=145.35  Aligned_cols=106  Identities=15%  Similarity=0.214  Sum_probs=92.1

Q ss_pred             CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~   81 (527)
                      ...+.|.|+|++|++|++++ ..|.+||||++.+.     ..+++|+++++++||.|||+|.|.+...   ...|.|+||
T Consensus        20 ~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~   99 (148)
T 3fdw_A           20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVW   99 (148)
T ss_dssp             TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEE
Confidence            35688999999999999888 58899999999985     3477999999999999999999998653   346999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 009741           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (527)
                      |++.++++++||++.++|.++  ......||+|.++.
T Consensus       100 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          100 HHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             EECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             ECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            999999999999999999998  45567999998753

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.69  E-value=1.2e-16  Score=139.14  Aligned_cols=103  Identities=22%  Similarity=0.406  Sum_probs=85.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEe-cC---CCcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v-~~---~~~~L~~~V~   81 (527)
                      ...+.|.|+|++|++|++++..|.+||||++.+     +...++|+++++++||.|||+|.|.+ ..   ....|.|+||
T Consensus        15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            346899999999999999999999999999998     35678999999999999999999995 31   2467999999


Q ss_pred             EcCCCCC--CceeEEEEEEcccC-CCcccEEEEcc
Q 009741           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLD  113 (527)
Q Consensus        82 d~d~~~~--d~~iG~~~i~l~~l-~~~~~~w~~L~  113 (527)
                      |++..++  +++||++.++|.++ .....+||+|.
T Consensus        95 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~Lq  129 (129)
T 2bwq_A           95 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  129 (129)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCcCcCcCCceeEEEEEEccccCCCcCCccEECc
Confidence            9999887  99999999999998 34478899984

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=140.23  Aligned_cols=104  Identities=20%  Similarity=0.352  Sum_probs=91.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEEEc
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW   83 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~d~   83 (527)
                      ...+.|.|+|++|++|+.++..|.+||||++.+.   ....+|+++++++||.|||+|.|.+..    ....|.|+|||+
T Consensus        23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            3568899999999999999999999999999983   457899999999999999999998522    256799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      +.++++++||++.++|.++  +.....|++|.+
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            9999999999999999998  445678999976

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.68  E-value=1.5e-16  Score=142.28  Aligned_cols=102  Identities=27%  Similarity=0.471  Sum_probs=91.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC--CcEEEEEEEEcCC
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDI   85 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~~~V~d~d~   85 (527)
                      .+.|.|+|++|++|+.++..+.+||||++.+.     ...++|+++++++||.|||+|.|.+...  ...|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            46799999999999999999999999999985     4578999999999999999999998653  4579999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009741           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l-~~~~~~w~~L~~  114 (527)
                      ++++++||++.++|.++ ....+.||+|.+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcCccCCeEEccC
Confidence            99999999999999998 345678999975

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.67  E-value=5.4e-17  Score=143.86  Aligned_cols=104  Identities=25%  Similarity=0.447  Sum_probs=90.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------EEEeeeecCCCCCeeccEEEEE-ecC---CCc
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE--------------KRFSSMVPGSRYPMWGEEFNFS-VDE---LPV   74 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~--------------~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~   74 (527)
                      .+.|.|+|++|++|++++..|.+||||++.+...              .++|+++++++||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            4689999999999999999999999999999753              3589999999999999999997 532   356


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 009741           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (527)
Q Consensus        75 ~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (527)
                      .|.|+|||++.++++++||++.++|..+  ......||+|.+..
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            8999999999999999999999999988  35578999998643

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.67  E-value=1.7e-16  Score=145.47  Aligned_cols=104  Identities=16%  Similarity=0.279  Sum_probs=90.8

Q ss_pred             CceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEE-EcC
Q 009741           12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWD   84 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~-d~d   84 (527)
                      ..+.|.|+|++|++|++++. .|.+||||++.+..     ..++|+++++++||.|||+|.|.+......|.|+|| |++
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            35789999999999999985 79999999999753     267899999999999999999998766678999999 999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009741           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (527)
                      .++++++||++.++|.++  +.....||+|.++
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            999999999999999998  4567899999863

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.67  E-value=3.1e-16  Score=140.93  Aligned_cols=104  Identities=26%  Similarity=0.427  Sum_probs=90.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEe--cCCCcEEEEEEEEc
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQIIVTIYDW   83 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v--~~~~~~L~~~V~d~   83 (527)
                      ...+.|.|+|++|++|++.+ .|.+||||++.+     .....+|+++++++||.|||+|.|.+  .+....|.|+|||+
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  102 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNR  102 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeC
Confidence            45788999999999999998 699999999998     33568999999999999999999998  44456799999999


Q ss_pred             CCCCC-CceeEEEEEEcccCC---CcccEEEEccCC
Q 009741           84 DIIWK-STVLGSVIVTVESEG---QTGAVWYTLDSP  115 (527)
Q Consensus        84 d~~~~-d~~iG~~~i~l~~l~---~~~~~w~~L~~~  115 (527)
                      +.+++ +++||++.++|.++.   .....||+|.++
T Consensus       103 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          103 ASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             CSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             CCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            99877 999999999999983   566789999763

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=5.9e-16  Score=136.64  Aligned_cols=100  Identities=16%  Similarity=0.221  Sum_probs=87.3

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C-eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S-EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~-~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d   84 (527)
                      ..+.|.|+|++|+   +++..|.+||||++.+.   . ..++|+++++++||.|||+|.|.+...   ...|.|+|||+|
T Consensus        24 ~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            4678999999999   46778999999999983   2 256899999999999999999998643   457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      .++++++||++.++|.++  ......|++|.+
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             CCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            999999999999999998  566789999976

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.66  E-value=2.2e-16  Score=139.64  Aligned_cols=104  Identities=22%  Similarity=0.407  Sum_probs=90.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEe-cC---CCcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v-~~---~~~~L~~~V~   81 (527)
                      ...+.|.|+|++|++|+.++..|.+||||++.+     ....++|+++++++||.|||+|.|.+ ..   ....|.|+||
T Consensus        18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            346889999999999999999999999999998     35677999999999999999999994 32   2467999999


Q ss_pred             EcCCCCC--CceeEEEEEEcccC-CCcccEEEEccC
Q 009741           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLDS  114 (527)
Q Consensus        82 d~d~~~~--d~~iG~~~i~l~~l-~~~~~~w~~L~~  114 (527)
                      |++..++  +++||++.++|.++ ......||+|.+
T Consensus        98 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~  133 (141)
T 1v27_A           98 DQARVREEESEFLGEILIELETALLDDEPHWYKLQT  133 (141)
T ss_dssp             EBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBC
T ss_pred             ECCCCcCCCCceEEEEEEEccccCCCCCCceEECcc
Confidence            9999887  99999999999998 444679999976

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.66  E-value=4.6e-16  Score=137.86  Aligned_cols=104  Identities=18%  Similarity=0.316  Sum_probs=90.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEE-ecCC---CcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~-v~~~---~~~L~~~V~   81 (527)
                      ...+.|.|+|++|++|+.++..|.+||||++.+..     ..++|+++++++||.|||+|.|. +...   ...|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            35678999999999999999999999999999864     67899999999999999999998 5432   257999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      |++.++++++||++.++|.++  +.....|++|..
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            999999999999999999998  344567888764

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=7.1e-16  Score=135.99  Aligned_cols=105  Identities=18%  Similarity=0.224  Sum_probs=89.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEE-ecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~~---~~~L~~~V~d   82 (527)
                      ...+.|.|+|++|++|+.++.. +.+||||++.+.   ...++|+++++++||.|||+|.|. +...   ...|.|+|||
T Consensus        19 ~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d   98 (138)
T 1ugk_A           19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence            3567899999999999999985 899999999985   367899999999999999999996 6432   3579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 009741           83 WDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~---~~~~~w~~L~~~  115 (527)
                      ++.++++++||++.++|.++.   .....|++|.++
T Consensus        99 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            999999999999999999983   223467999753

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=139.90  Aligned_cols=106  Identities=26%  Similarity=0.399  Sum_probs=89.7

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d   82 (527)
                      ...+.|.|+|++|++|++++..| +||||++.+.     ...++|+++++++||.|||+|.|.+..   ....|.|+|||
T Consensus        21 ~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           21 SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            34678999999999999999888 9999999983     256799999999999999999999753   13579999999


Q ss_pred             cCCCCC--CceeEEEEEEcccC--CCcccEEEEccCCCc
Q 009741           83 WDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG  117 (527)
Q Consensus        83 ~d~~~~--d~~iG~~~i~l~~l--~~~~~~w~~L~~~~G  117 (527)
                      ++.+++  +++||++.++|..+  ......|++|.++.+
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~  138 (142)
T 2dmg_A          100 SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG  138 (142)
T ss_dssp             CCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred             CCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence            998764  57999999999988  446778999986443

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.65  E-value=7.1e-16  Score=135.74  Aligned_cols=103  Identities=26%  Similarity=0.402  Sum_probs=88.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCCC---cEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP---VQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~---~~L~~~V~d   82 (527)
                      ...+.|.|+|++|++|+..+..|.+||||++.+..     ...+|+++++++||.|||+|.|.+....   ..|.|+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            45689999999999999999999999999999853     3668999999999999999999986533   569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~  113 (527)
                      ++.++++++||++.+++.++......|++|.
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~  123 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPGEVKHWKDMI  123 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEEEccccCChHHHHHHHHH
Confidence            9999999999999999998754445566554

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.64  E-value=1.4e-15  Score=137.56  Aligned_cols=104  Identities=33%  Similarity=0.471  Sum_probs=88.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|++|+.++..|.+||||++.+..     ...+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            35679999999999999999999999999999842     356899999999999999999998543   3569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 009741           83 WDIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l--------------~~~~~~w~~L~~  114 (527)
                      ++.++++++||++.+++..+              +....+||+|.+
T Consensus       102 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A          102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            99999999999999999854              234567888865

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.64  E-value=1.6e-16  Score=144.74  Aligned_cols=102  Identities=18%  Similarity=0.338  Sum_probs=88.7

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~   83 (527)
                      ..+.|.|+|++|++|+.++..|.+||||++.+..     ..++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            4678999999999999999999999999999864     577999999999999999999998542   45799999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~  113 (527)
                      +.++++++||++.+++.+++.....|++|.
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~  144 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGERLKHWYECL  144 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred             CCCCCCcEEEeEEEecccCCchhHHHHHHH
Confidence            999999999999999998754455566664

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=5.1e-16  Score=138.46  Aligned_cols=105  Identities=18%  Similarity=0.308  Sum_probs=88.8

Q ss_pred             CCceEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEE
Q 009741           11 NSAYLIKLELLAAKNLIGA-NL------NGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQII   77 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~-d~------~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~   77 (527)
                      +..+.|.|+|++|++|+.. +.      .+.+||||++.+.   ...++|+++++++||.|||+|.|.+..   ....|.
T Consensus        23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence            3467899999999999984 43      4589999999985   357799999999999999999999753   235799


Q ss_pred             EEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009741           78 VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (527)
Q Consensus        78 ~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (527)
                      |+|||++.++++++||++.++|.++  ......|++|.++
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9999999999999999999999998  3445789999864

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.63  E-value=3.3e-16  Score=140.68  Aligned_cols=102  Identities=19%  Similarity=0.372  Sum_probs=81.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---EEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE---KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~   83 (527)
                      ..+.|.|+|++|++|+.++..|.+||||++.+  +..   +++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            46789999999999999998999999999998  433   56899999999999999999998653   25699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~  113 (527)
                      +.++++++||++.+++.+.......|++|.
T Consensus       108 d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~  137 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATAEGSGGGHWKEIC  137 (153)
T ss_dssp             CTTSCCEEEEEEEESTTCCSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCCCchHHHHHHHHH
Confidence            999999999999999998654455566664

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.62  E-value=4.1e-15  Score=147.37  Aligned_cols=149  Identities=19%  Similarity=0.334  Sum_probs=112.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d   84 (527)
                      ...+.|.|+|++|++|++++..|.+||||++.+.   ....+|+++++++||.|||+|.|.+..   ....|.|+|||++
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            3568999999999999999999999999999985   346789999999999999999999753   2467999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEeecccCccccccCccchhcccccccccCCC
Q 009741           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP  155 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  155 (527)
                      .++++++||++.++|..+  +.....|++|.+.       .|++.+.+.+.+..    ..+.       -.-++...+..
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~----~~l~-------v~v~~a~~L~~  164 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTA----GKLT-------VVILEAKNLKK  164 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTT----TEEE-------EEEEEEESCCC
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcC----CceE-------EEEEEeECCCC
Confidence            999999999999999998  4456789999652       36666666554211    0000       01112334444


Q ss_pred             ceeccCCcccccccc
Q 009741          156 TVVHQKPGPLQTIFN  170 (527)
Q Consensus       156 ~~~~~k~~~f~~~F~  170 (527)
                      ++..+.+++|.++.-
T Consensus       165 ~d~~~~~dpyv~v~~  179 (284)
T 2r83_A          165 MDVGGLSDPYVKIHL  179 (284)
T ss_dssp             CSTTSCCCEEEEEEE
T ss_pred             cCCCCCcCeEEEEEE
Confidence            455566777776663

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.59  E-value=1e-14  Score=145.56  Aligned_cols=151  Identities=17%  Similarity=0.239  Sum_probs=111.7

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d   84 (527)
                      ...+.|.|+|++|++|++++..|.+||||++.+   +.+.++|+++++++||.|||+|.|.+...   ...|.|+|||+|
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            457899999999999999999999999999998   46678999999999999999999998532   347999999999


Q ss_pred             CCCCCceeEEEEEE-cccC---CCcccEEEEccCC------CceEEEEEEEeecccCccccccCccchhcccccccccCC
Q 009741           85 IIWKSTVLGSVIVT-VESE---GQTGAVWYTLDSP------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQG  154 (527)
Q Consensus        85 ~~~~d~~iG~~~i~-l~~l---~~~~~~w~~L~~~------~G~i~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  154 (527)
                      .++++++||++.++ +.++   ......|++|.+.      .|++.+.+.+.+..  +      .+.   -.-+++..+.
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~--~------~l~---v~v~~a~~L~  165 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTA--G------LLT---VTIIKASNLK  165 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTT--T------EEE---EEEEEEESCC
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecccc--c------eeE---EEEEEeecCC
Confidence            99999999999985 3333   4456789999642      37777666654211  0      000   0011233444


Q ss_pred             CceeccCCcccccccccC
Q 009741          155 PTVVHQKPGPLQTIFNLL  172 (527)
Q Consensus       155 ~~~~~~k~~~f~~~F~lp  172 (527)
                      .++..+++++|.++.-.+
T Consensus       166 ~~d~~g~~Dpyv~v~l~~  183 (296)
T 1dqv_A          166 AMDLTGFSDPYVKASLIS  183 (296)
T ss_dssp             CCSSSSCCCEEEEECCCT
T ss_pred             ccCCCCCCCcEEEEEEEe
Confidence            455566778887776443

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.56  E-value=2.1e-14  Score=153.28  Aligned_cols=111  Identities=20%  Similarity=0.291  Sum_probs=96.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCCCCC
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIWKS   89 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~--~~~~~L~~~V~d~d~~~~d   89 (527)
                      ..+.|.|+|++|++|+. |..|.+||||++.++++..+|+++++++||.|||+|.|.+.  .....|.|+|||+|..++|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            36899999999999998 99999999999999998999999999999999999999853  3567799999999999999


Q ss_pred             ceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEEee
Q 009741           90 TVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIK  127 (527)
Q Consensus        90 ~~iG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~l~~~~  127 (527)
                      |+||++.++|..  .....|++|.  +|.+.+.+++.-
T Consensus       471 D~LG~~~~~L~~--g~~~~~~~l~--~G~l~~~~~~~c  504 (540)
T 3nsj_A          471 DLLGSCDRSPHS--GFHEVTCELN--HGRVKFSYHAKC  504 (540)
T ss_dssp             EEEEEEEECCCS--EEEEEEEECS--SSEEEEEEEEEE
T ss_pred             CEEEEEEEEeeC--CcEEEEEEcC--CeEEEEEEEEEE
Confidence            999999999884  2346788875  788887777653

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.56  E-value=3.3e-14  Score=152.62  Aligned_cols=116  Identities=21%  Similarity=0.339  Sum_probs=101.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCC-cEEEEEEEEcCCCCCC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKS   89 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~~~V~d~d~~~~d   89 (527)
                      ...+.|.|+|++|++|+++|..|.+||||++.++....+|+++++++||.|+|+|.|.+.... ..|.|+|||+|.+++|
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~  463 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD  463 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence            346899999999999999999999999999999999999999999999999999999986644 5699999999999999


Q ss_pred             ceeEEEEEEcccCC------CcccEEEEccC-CCceEEEEEEEe
Q 009741           90 TVLGSVIVTVESEG------QTGAVWYTLDS-PSGQVCLHIKTI  126 (527)
Q Consensus        90 ~~iG~~~i~l~~l~------~~~~~w~~L~~-~~G~i~l~l~~~  126 (527)
                      ++||++.+++.++.      .....|++|.+ ..|++.+.+.+.
T Consensus       464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            99999999999882      22678999975 468888877765

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.55  E-value=7.5e-14  Score=121.86  Aligned_cols=84  Identities=17%  Similarity=0.324  Sum_probs=72.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~   91 (527)
                      -+.|.|+|++|++|..   .|.+||||++.  .+..+|+++. +++||.|||+|.|.+......|.|+|||+| .++|++
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   77 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   77 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEE
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCe
Confidence            4789999999998842   68899999999  2344555554 699999999999999877778999999999 889999


Q ss_pred             eEEEEEEcccC
Q 009741           92 LGSVIVTVESE  102 (527)
Q Consensus        92 iG~~~i~l~~l  102 (527)
                      ||++.++|.++
T Consensus        78 iG~~~i~l~~l   88 (131)
T 2cjt_A           78 VGTVWIPLRTI   88 (131)
T ss_dssp             EEEEEEEGGGS
T ss_pred             EEEEEEEHHHh
Confidence            99999999998

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.53  E-value=4.7e-14  Score=128.34  Aligned_cols=85  Identities=16%  Similarity=0.302  Sum_probs=74.0

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~   90 (527)
                      ..+.|.|+|++|++|.   ..|.+||||++.  .+..+|++++ ++.||.|||+|.|.+......|.|+|||+| +++|+
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   85 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   85 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCE
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCc
Confidence            4679999999999874   368899999999  3345666665 699999999999999877778999999999 88999


Q ss_pred             eeEEEEEEcccC
Q 009741           91 VLGSVIVTVESE  102 (527)
Q Consensus        91 ~iG~~~i~l~~l  102 (527)
                      +||++.|+|.++
T Consensus        86 ~iG~~~i~L~~l   97 (167)
T 2cjs_A           86 MVGTVWIPLRTI   97 (167)
T ss_dssp             EEEEEEEEGGGS
T ss_pred             eEEEEEEEHHHh
Confidence            999999999998

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.47  E-value=2.9e-13  Score=133.94  Aligned_cols=103  Identities=33%  Similarity=0.480  Sum_probs=87.8

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~   83 (527)
                      ..+.|.|.|++|++|+.++..|.+||||++.+.  +   ..++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            457899999999999999999999999999973  2   356899999999999999999998653   34699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 009741           84 DIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l--------------~~~~~~w~~L~~  114 (527)
                      +.++++++||++.+++..+              +....+|++|.+
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             CCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            9999999999999999864              234567888865

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.42  E-value=2.6e-12  Score=111.21  Aligned_cols=112  Identities=14%  Similarity=0.249  Sum_probs=91.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII   86 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~   86 (527)
                      .+...|+|.|.+|.+|+     |++|||+.+.+.+.+++|+++. ++.||.|||.|++++..   ....|.|.|+|++.+
T Consensus        18 ~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v   92 (144)
T 3l9b_A           18 GSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV   92 (144)
T ss_dssp             -CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred             CCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence            45678999999999997     5899999999999999999998 69999999999999753   355699999999999


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEccCCC-----ceEEEEEEEee
Q 009741           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----GQVCLHIKTIK  127 (527)
Q Consensus        87 ~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~~-----G~i~l~l~~~~  127 (527)
                      +++++||++.++|.++  ......+.+|....     +.|++.|.+.+
T Consensus        93 ~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           93 FSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             SCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence            9999999999999998  33344566665433     45566666664

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.41  E-value=2.3e-12  Score=140.58  Aligned_cols=106  Identities=21%  Similarity=0.303  Sum_probs=92.4

Q ss_pred             CceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEeeeecCC-CCCeeccEEEEEecCCC-cEEEEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGS-RYPMWGEEFNFSVDELP-VQIIVTIYD   82 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t-~nP~W~e~f~f~v~~~~-~~L~~~V~d   82 (527)
                      ..+.|.|+|++|++|+..+.  .+.+||||++.+.+     .+.+|++++++ +||.|||+|.|.+..+. ..|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999998874  78999999999833     67899999997 99999999999987643 569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (527)
                      +|..+++++||++.++|..+..+ .+|++|....|+
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G-~r~v~L~d~~g~  609 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  609 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC-cEEEeCCCCCcC
Confidence            99999999999999999999654 579999765555

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.40  E-value=5.4e-13  Score=146.78  Aligned_cols=103  Identities=20%  Similarity=0.370  Sum_probs=92.4

Q ss_pred             CCceEEEEEEEEeecCCC---CCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEc
Q 009741           11 NSAYLIKLELLAAKNLIG---ANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW   83 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~---~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~   83 (527)
                      ...+.|.|+|++|++|++   +|..|.+||||++.+.   ..+++|+++++++||.|||+|.|.+.. ....|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            457899999999999998   7888999999999987   467899999999999999999999976 456799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      |.++ |++||++.++|.++  +.....|++|.+
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            9998 99999999999998  445689999986

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.36  E-value=1.7e-13  Score=136.62  Aligned_cols=101  Identities=27%  Similarity=0.407  Sum_probs=85.2

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~   83 (527)
                      ..+.|.|.|++|++|+.++..|.+||||++++.     ..+++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            468899999999999999999999999999985     2467899999999999999999988653   34699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCC-cccEEEEc
Q 009741           84 DIIWKSTVLGSVIVTVESEGQ-TGAVWYTL  112 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~-~~~~w~~L  112 (527)
                      +.++++++||.+.|++..+.. ....|+.+
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~  259 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADPHGREHWAEM  259 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHHHHHHHHTS
T ss_pred             CCCCCCceEEEEEECCccCCchhHHHHHHH
Confidence            999999999999999987743 33344443

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.22  E-value=1.2e-12  Score=139.15  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=14.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCC---CCCeeccEEEEEecCCCcEEEEEEEEc-C-
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGS---RYPMWGEEFNFSVDELPVQIIVTIYDW-D-   84 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t---~nP~W~e~f~f~v~~~~~~L~~~V~d~-d-   84 (527)
                      ...+.|.|+|++|++|++++     ||||.+.+++. ..+|++++++   +||.|||+|.|.+......|.|+|||. | 
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~   82 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDK   82 (483)
T ss_dssp             EEEECC--------------------------------------------------CCEECC------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCc
Confidence            34678999999999998876     99999998765 4589999999   999999999998654457799999994 4 


Q ss_pred             --CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741           85 --IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (527)
Q Consensus        85 --~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~  113 (527)
                        ..+++++||++.|++..+  +...+.||+|.
T Consensus        83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             ------------------------CCEECC---
T ss_pred             cccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence              367899999999999998  45567899994

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.17  E-value=4e-11  Score=132.89  Aligned_cols=102  Identities=27%  Similarity=0.494  Sum_probs=90.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEecC--CCcEEEEEEEEcCC
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~~~V~d~d~   85 (527)
                      .+.|.|.|++|++|.++|..|.+||||++.+     ...+.+|+++++++||.|||+|.|.+..  ....|.|+|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            4678999999999999999999999999998     4456799999999999999999999753  34569999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009741           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l-~~~~~~w~~L~~  114 (527)
                      .++|++||.+.+++.++ ....+.|+.|..
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls  280 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  280 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCCEEEEEECBC
T ss_pred             ccccccccccccchhhhccCCcccceeecc
Confidence            99999999999999998 444688999975

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.98  E-value=4.1e-09  Score=117.20  Aligned_cols=106  Identities=16%  Similarity=0.218  Sum_probs=84.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeeeecC-CCCCeeccE-EEEE-ecCCC-cEEEEEEE
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPG-SRYPMWGEE-FNFS-VDELP-VQIIVTIY   81 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~-t~nP~W~e~-f~f~-v~~~~-~~L~~~V~   81 (527)
                      .+.|.|+|++|++|+.    ..+||||++.+.+       .+++|+++++ ++||.|||+ |.|. +..+. ..|+|.||
T Consensus       649 ~~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSD----KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCS----SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCC----CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            5789999999999975    3689999999743       5678999976 599999998 9998 75433 46999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce------EEEEEEEee
Q 009741           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ------VCLHIKTIK  127 (527)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~------i~l~l~~~~  127 (527)
                      |++    ++|||++.++|+.+..+ .++++|..+.|+      +.++|.+..
T Consensus       725 D~d----ddfiG~~~ipL~~L~~G-yR~vpL~~~~g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPG-YRHVPLRNESNRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             ecC----CCeeeEEEEEHHHcCCc-ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence            985    78999999999999765 568888765544      445555553

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.95  E-value=1.7e-08  Score=84.85  Aligned_cols=108  Identities=13%  Similarity=0.208  Sum_probs=84.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE----EEe-eeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~----~~T-~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (527)
                      ...|+|.+.++.--..+......||||.+.++...    .+| ...++|..|.||++|.-.+.+ .+.|.|.|++...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence            46788888776532222233468999999986433    244 667889999999999999987 8899999997554  


Q ss_pred             CCceeEEEEEEcccCC-------CcccEEEEccCCCceEEEEEEEe
Q 009741           88 KSTVLGSVIVTVESEG-------QTGAVWYTLDSPSGQVCLHIKTI  126 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l~-------~~~~~w~~L~~~~G~i~l~l~~~  126 (527)
                        +|++.++|.+.++.       ...+.|++|.| .|++++.+++.
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMSVQYF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEE
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEe
Confidence              89999999999882       34578999997 89999998876

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.94  E-value=4.8e-09  Score=117.33  Aligned_cols=105  Identities=15%  Similarity=0.243  Sum_probs=83.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeecC-CCCCeecc-EEEEE-ecCC-CcEEEEEEEE
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPG-SRYPMWGE-EFNFS-VDEL-PVQIIVTIYD   82 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~-t~nP~W~e-~f~f~-v~~~-~~~L~~~V~d   82 (527)
                      ...|.|+|++|++|+.    ..+||||+|.+.+      .+++|+++.+ ++||.||| +|.|. +..+ -..|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSD----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCcc----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            4689999999999975    3689999999743      2468999976 59999999 69998 6543 3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc------eEEEEEEEe
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG------QVCLHIKTI  126 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G------~i~l~l~~~  126 (527)
                      +|    ++|||++.++|..+..+ .++++|..+.|      .+.++|.+.
T Consensus       800 ~d----ddfiG~~~lpL~~L~~G-yR~vpL~~~~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSG-YHYVCLRNEANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CC----ccEEeeEEEEHHHcCCC-ceEEEecCCCCCccCceEEEEEEEEE
Confidence            87    78999999999999764 56788876554      345555555

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.93  E-value=1.2e-08  Score=86.81  Aligned_cols=115  Identities=10%  Similarity=0.213  Sum_probs=88.5

Q ss_pred             CCCCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCeE----EEe-eeecCCCCCeeccEEEEEecCCCcEEEEEEEE
Q 009741            9 QTNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~~~~----~~T-~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d   82 (527)
                      ++.-...|+|.+.++.-.+.+. .....||||.+.++...    .+| ...++|..|.||++|.-.+.+ .+.|.|.|++
T Consensus         5 ~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh   83 (138)
T 2enj_A            5 SSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKG   83 (138)
T ss_dssp             CSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEEC
T ss_pred             ccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEc
Confidence            3445678899987776433222 13368999999986432    456 666779999999999999887 8889999996


Q ss_pred             cCCCCCCceeEEEEEEcccCC-------CcccEEEEccCCCceEEEEEEEeecc
Q 009741           83 WDIIWKSTVLGSVIVTVESEG-------QTGAVWYTLDSPSGQVCLHIKTIKLP  129 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~-------~~~~~w~~L~~~~G~i~l~l~~~~~~  129 (527)
                      ...    +|++.++|.+.+|.       ...+.|++|.| .|++++.+++..+.
T Consensus        84 ~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-~Gkl~v~i~~~~e~  132 (138)
T 2enj_A           84 KNV----DLISETTVELYSLAERCRKNNGKTEIWLELKP-QGRMLMNARYFLEM  132 (138)
T ss_dssp             SSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-SCEEEEEEEECCCS
T ss_pred             CCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEEEec
Confidence            444    89999999999882       34578999997 89999999987443

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.88  E-value=9.6e-09  Score=114.74  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=79.7

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEee-eecC-CCCCeecc-EEEE-EecCC-CcEEEEEE
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSS-MVPG-SRYPMWGE-EFNF-SVDEL-PVQIIVTI   80 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~------~~~~T~-~~~~-t~nP~W~e-~f~f-~v~~~-~~~L~~~V   80 (527)
                      ..+.|.|+|++|++|+.    +.+||||++.+.+      ++++|+ ++++ ++||.||| +|.| .+..+ -..|+|.|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46799999999999975    4689999999832      357899 8865 69999999 6999 77543 34699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (527)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (527)
                      ||++    +++||++.++|..+..+ .+|++|....|.
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G-~r~v~L~~~~g~  784 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG-YHHLCLHSESNM  784 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             EEeC----CCccceEeeehhhcCCC-cEEEeccCCCCC
Confidence            9986    78999999999999654 678999765554

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=93.53  E-value=0.78  Score=39.40  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             cceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEEEEEecCCCCCCC-CCCCCCCCceeEEEeeeec
Q 009741          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGV-PPLGSPDGRVRYKFASFWN  269 (527)
Q Consensus       191 ~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~f~sf~~  269 (527)
                      -.|++|+|.+.|||....- ....+.|||..|..++..... +..+.+|++...+...+. ++-.+..+ ..++-.||-.
T Consensus        38 k~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~-f~~s~Ki~l~l~~~~~~~~~gp~~~s~-~~~~kLsFr~  114 (140)
T 2hth_B           38 DAGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAG-IGKSAKIVVHLHPAPPNKEPGPFQSSK-NSYIKLSFKE  114 (140)
T ss_dssp             CCEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCT-TSSCCEEEEEECCCCCCSSSCCCSTTS-CCEEEEEETT
T ss_pred             cCCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccc-cccCceEEEEecCCCccCCCCCccccc-CcEEEEEEcC
Confidence            4799999999999976543 457899999999999999875 333444444433211110 01111122 3455556643


Q ss_pred             --hHHHHHHHHHHHHh
Q 009741          270 --RNHALRQLQRTAKN  283 (527)
Q Consensus       270 --r~~~~~~l~~~~~~  283 (527)
                        .++-+..|.+.++.
T Consensus       115 Gg~~eF~~~L~~al~~  130 (140)
T 2hth_B          115 HGQIEFYRRLSEEMTQ  130 (140)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHH
Confidence              35555666666554

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=92.81  E-value=0.51  Score=40.82  Aligned_cols=85  Identities=15%  Similarity=0.170  Sum_probs=56.3

Q ss_pred             ccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeec
Q 009741          190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN  269 (527)
Q Consensus       190 ~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~  269 (527)
                      .-.|++|+|...|||-...-.....|.+||..|.+++.....+ ..++.|++...++..       .....++.|.+--.
T Consensus        50 ~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~f-g~s~Ki~l~~~p~~~-------~~~~~KLsFk~GGa  121 (145)
T 2cay_A           50 RQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFL-TRSPRLILFFKDPSS-------STEFVQLSFRKSDG  121 (145)
T ss_dssp             CSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSS-SSSCEEEEEESSCSS-------TTCCEEEEESSSCC
T ss_pred             CCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCcc-ccCceEEEEecCCCC-------CceEEEEEEcCCCc
Confidence            3479999999999998655433478999999999999987653 335666655432211       12345555555443


Q ss_pred             hHHHHHHHHHHHHh
Q 009741          270 RNHALRQLQRTAKN  283 (527)
Q Consensus       270 r~~~~~~l~~~~~~  283 (527)
                       ++-+..|.+.+++
T Consensus       122 -~eF~~~l~~al~~  134 (145)
T 2cay_A          122 -VLFSQATERALEN  134 (145)
T ss_dssp             -HHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHH
Confidence             5556666666655

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=91.04  E-value=2.4  Score=39.32  Aligned_cols=71  Identities=10%  Similarity=-0.025  Sum_probs=44.4

Q ss_pred             CCCeEEEEEeeeeCCCCCCC-eEE---EEEEEEEEeec--CCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHH
Q 009741          421 DKKIFVFETVQQAHDVPFGS-YFE---IHGRWHLETIA--ENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE  494 (527)
Q Consensus       421 ~~~~~vi~~~~~~~dvPygd-~F~---v~~r~~i~~~~--~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~  494 (527)
                      ++.++++..+..-+.+|-.. +=+   ..+.|+|++.+  +++|++...   +.++..+|. -+.++.+.+.......+.
T Consensus       142 ~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~i-P~~l~n~~~~~~~~~~~~  217 (229)
T 1em2_A          142 RDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWI---LNTDLKGRL-PRYLIHQSLAATMFEFAF  217 (229)
T ss_dssp             SSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEE---ECEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEE---EEECCCCCC-CHHHHHHHHHHHHHHHHH
Confidence            44566666666677788543 223   34689999976  578999988   888887652 244455544444444333


Q ss_pred             H
Q 009741          495 L  495 (527)
Q Consensus       495 ~  495 (527)
                      .
T Consensus       218 ~  218 (229)
T 1em2_A          218 H  218 (229)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=90.86  E-value=1.4  Score=40.76  Aligned_cols=146  Identities=10%  Similarity=0.055  Sum_probs=77.1

Q ss_pred             eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEE-ec--CCCCCCcceeEeEEEEE
Q 009741          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS-LC--KSPIYPRDTAMTESQHA  416 (527)
Q Consensus       340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~-~~--~~~~gpk~~~~~~~Q~~  416 (527)
                      +..+++++++++|++|+.| ...       +..+|-.+...+.-+..+..+ .+.|.. +-  ..++.|+.--+  ....
T Consensus        59 ~~~~v~~~~~~v~~~l~~d-~~~-------r~~Wd~~~~~~~vle~~~~~t-~I~y~~~~~~~~~~v~~RDfv~--~r~~  127 (221)
T 3p0l_A           59 LEVVVDQPMERLYEELVER-MEA-------MGEWNPNVKEIKVLQKIGKDT-FITHELAAEAAGNLVGPRDFVS--VRCA  127 (221)
T ss_dssp             EEEEESSCHHHHHHHHTTT-GGG-------TTTSCTTCSEEEEEEECSSSE-EEEEEEECC---CCSCCEEEEE--EEEE
T ss_pred             EEEEEcCCHHHHHHHHHhc-cch-------hhhcCcchheEEEEEecCCCe-EEEEEeeccccCCccCCceEEE--EEEE
Confidence            3467899999999999853 211       222221122222211111223 344543 21  12344443221  1112


Q ss_pred             EEcCCCCeEEEEEeeeeCCCCCC-CeEEE---EEEEEEEeecCC--ceEEEEEEeeeeEEEeecceeeeeeehhhHHHHH
Q 009741          417 VLSPDKKIFVFETVQQAHDVPFG-SYFEI---HGRWHLETIAEN--SSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK  490 (527)
Q Consensus       417 ~~~~~~~~~vi~~~~~~~dvPyg-d~F~v---~~r~~i~~~~~~--~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~  490 (527)
                      .. .++.++++......+.+|-. ++-++   ...|+|++.+++  +|+|...   ..++..+| +-++++.+.+.....
T Consensus       128 ~~-~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~-iP~~lvn~~~~~~~~  202 (221)
T 3p0l_A          128 KR-RGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWL---LSIDLKGW-LPKSIINQVLSQTQV  202 (221)
T ss_dssp             EE-CSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEE---ECEECCSS-CCHHHHHHHHHHHHH
T ss_pred             EE-cCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEE---EEecCCCC-CCHHHHHHHHHHHHH
Confidence            22 34556666566666777763 44344   467999999866  8999998   88887665 234444444333333


Q ss_pred             HHHHHHHHHHHHHHh
Q 009741          491 KEVELMLETARSYIK  505 (527)
Q Consensus       491 ~~~~~~~~~~~~~l~  505 (527)
                          ..++.+++.++
T Consensus       203 ----~~~~~Lr~~~~  213 (221)
T 3p0l_A          203 ----DFANHLRKRLE  213 (221)
T ss_dssp             ----HHHHHHHHHTC
T ss_pred             ----HHHHHHHHHHh
Confidence                45555555555

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=90.23  E-value=7.6  Score=33.29  Aligned_cols=143  Identities=12%  Similarity=0.042  Sum_probs=74.2

Q ss_pred             cceeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEE
Q 009741          336 LVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQH  415 (527)
Q Consensus       336 ~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~  415 (527)
                      |+.-.+.+++.|++++|.++-+  ...+.++.-  +...+.     ..++ +..    .+...  ..+||-.......-+
T Consensus         3 m~i~~~~~i~ap~e~Vw~~l~D--~e~~~~w~p--~~~~~~-----~~~~-~~~----~~~~~--~~~g~~~~~~~~~~~   66 (162)
T 2pcs_A            3 LNGNGSIELKGTVEEVWSKLMD--PSILSKCIM--GCKSLE-----LIGE-DKY----KADLQ--IGIAAVKGKYDAIIE   66 (162)
T ss_dssp             CEEEEEEEEESCHHHHHHHHTC--HHHHHHHST--TEEEEE-----EEET-TEE----EEEEE--ECCGGGCEEEEEEEE
T ss_pred             EEEeeEEEecCCHHHHHHHhcC--HHHHHhhCC--CceEeE-----EeCC-CeE----EEEEE--EEeeeEEEEEEEEEE
Confidence            3445667999999999999843  333444432  222221     1111 221    12221  224543333322223


Q ss_pred             E-EEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeec--ceeeeeeehhhHHHHHHH
Q 009741          416 A-VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKW--CVIQFKIKTGAVNKYKKE  492 (527)
Q Consensus       416 ~-~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~--t~~K~~Ie~~~~~~~~~~  492 (527)
                      + ...+ ...+.+.....-.    +..+.....|.|+..++++|+|.+.   ..+.+...  .++..++..    -..+.
T Consensus        67 ~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~gT~v~~~---~~~~~~g~l~~~~~~l~~~----~~~~~  134 (162)
T 2pcs_A           67 VTDIKP-PYHYKLLVNGEGG----PGFVNAEGVIDLTPINDECTQLTYT---YSAEVGGKVAAIGQRMLGG----VAKLL  134 (162)
T ss_dssp             EEEEET-TTEEEEEEEEEET----TEEEEEEEEEEEEESSSSEEEEEEE---EEEEEESGGGGGCHHHHHH----HHHHH
T ss_pred             EEecCC-CcEEEEEEEecCC----CccEEEEEEEEEEecCCCcEEEEEE---EEEEECCCHHHhhHHHHHH----HHHHH
Confidence            3 2333 3466665553321    3345678899999876778999998   88877541  222222222    12334


Q ss_pred             HHHHHHHHHHHHhh
Q 009741          493 VELMLETARSYIKI  506 (527)
Q Consensus       493 ~~~~~~~~~~~l~~  506 (527)
                      ++.+++.+++.+..
T Consensus       135 ~~~~~~~lk~~~e~  148 (162)
T 2pcs_A          135 ISDFFKKIQKEIAK  148 (162)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            45556666665543

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=90.08  E-value=4.7  Score=35.02  Aligned_cols=144  Identities=15%  Similarity=0.126  Sum_probs=80.7

Q ss_pred             eeeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (527)
Q Consensus       340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (527)
                      .+.+.++|+++||+++..|...++.+.+ ...+..++ .+.|.     .+..|.++|..     -||. .  ..+++++.
T Consensus         8 ~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~v-eGdg~-----~Gsir~~t~~~-----g~~~-~--~~kErle~   73 (154)
T 2wql_A            8 LEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGG-----AGTVRIITLPE-----GSPI-T--TMTVRTDA   73 (154)
T ss_dssp             EEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEE-ESSSS-----TTCEEEEECCT-----TCSC-C--EEEEEEEE
T ss_pred             EEEEecCCHHHHHHHHhhcccccchhhcccceeEEEE-ECCCC-----CCeEEEEEEcC-----CCCc-e--EEEEEEEE
Confidence            3567889999999999876444555544 23333332 33332     36789888732     2332 1  23466664


Q ss_pred             c-CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHH
Q 009741          419 S-PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELML  497 (527)
Q Consensus       419 ~-~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~  497 (527)
                      . +++..|.  .+..--|+....+=+......+.+.++++|.++..     +.|.+-.  -..+.-...+..++....++
T Consensus        74 iD~~~~~~~--y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t-----~~Y~~~~--~~~~~ee~~~~~~~~~~~~~  144 (154)
T 2wql_A           74 VNKEALSYD--STVIDGDILLGFIESIETHMVVVPTADGGSITKTT-----AIFHTKG--DAVVPEENIKFADAQNTALF  144 (154)
T ss_dssp             EETTTTEEE--EEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEE-----EEEEEST--TCCCCHHHHHHHHHHHHHHH
T ss_pred             EehhhCEEE--EEEEeccccccceEEEEEEEEEeeCCCCcEEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHhHH
Confidence            3 3333333  33333444433344455677778888888876655     4455421  11233333445566677788


Q ss_pred             HHHHHHHhh
Q 009741          498 ETARSYIKI  506 (527)
Q Consensus       498 ~~~~~~l~~  506 (527)
                      +.++.+|-.
T Consensus       145 KaiEayLla  153 (154)
T 2wql_A          145 KAIEAYLIA  153 (154)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888888754

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=88.65  E-value=5.7  Score=36.06  Aligned_cols=120  Identities=12%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             eeeeeee-cCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEE
Q 009741          339 IYNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (527)
Q Consensus       339 ~~~~~~~-~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (527)
                      -...+++ ++++++|+++..  .....++........+.    ..  + +  ...+.+......|+.++.- |.......
T Consensus        55 k~~~~i~~~~~~~v~~~l~d--~~~r~~Wd~~~~~~~vl----e~--~-~--~~i~~~~~~~p~p~~~RD~-v~~~~~~~  122 (214)
T 1ln1_A           55 KVFGVLEDCSPTLLADIYMD--SDYRKQWDQYVKELYEQ----EC--N-G--ETVVYWEVKYPFPMSNRDY-VYLRQRRD  122 (214)
T ss_dssp             EEEEEETTSCHHHHHHHHHC--HHHHHHHCTTEEEEEEE----EE--T-T--EEEEEEEECCCTTSCCEEE-EEEEEEEE
T ss_pred             EEEEEECCCCHHHHHHHHcC--HHHHHHHHHHHhhEEEe----cc--C-C--CEEEEEEEEcCCCCCCceE-EEEEEEEe
Confidence            4567895 999999999875  23333322222222221    11  1 3  2233333333234544332 22212122


Q ss_pred             EcCCCC-e-EEEEEeeeeCCCCCCCeE----EEEEEEEEEeecCCceEEEEEEeeeeEEEee
Q 009741          418 LSPDKK-I-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHFKK  473 (527)
Q Consensus       418 ~~~~~~-~-~vi~~~~~~~dvPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K  473 (527)
                      ..+++. . +++.....-+++|-...|    .....|+|++.++++|++...   ..++...
T Consensus       123 ~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~---~~~Dp~G  181 (214)
T 1ln1_A          123 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMY---YFDNPGG  181 (214)
T ss_dssp             ECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEE---EEECCSS
T ss_pred             cccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEE---EEECCCC
Confidence            223443 3 455556666778753333    356789999998899999998   8887764

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=88.02  E-value=2.8  Score=37.40  Aligned_cols=144  Identities=10%  Similarity=0.058  Sum_probs=72.3

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (527)
                      -...+++.|++++|+++..  .....++...+....+..    . ++  + ...+.+......|+.++.  .........
T Consensus        30 k~~~~v~~s~~~v~~~l~D--~~~~~~W~~~~~~~~vle----~-~~--~-~~i~y~~~~~p~p~~~RD--~v~~~~~~~   97 (189)
T 3qsz_A           30 RGEVRLKAAADDVVKVLRD--ANAFRQWMPDVAASELLK----A-TD--T-EQYHYLDNSAPWPVSNRD--GVYHFTYEK   97 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHC--GGGGGGTSTTEEEEEEEE----E-CS--S-EEEEEEEECCSSSCCCEE--EEEEEEEEE
T ss_pred             EEEEEEECCHHHHHHHHHh--HHHhhhHHHhcCEEEEEe----e-cC--C-ceEEEEEeecCCCcCCcc--eEEEEEEEE
Confidence            4467889999999998754  333333222222222211    1 11  1 222222222212333332  222222333


Q ss_pred             cCCCCeEEEEEeeeeCCCCCCCe----EEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHH
Q 009741          419 SPDKKIFVFETVQQAHDVPFGSY----FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE  494 (527)
Q Consensus       419 ~~~~~~~vi~~~~~~~dvPygd~----F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~  494 (527)
                      ..++ .++|......+.+|-...    ......|+|++ ++++|++...   +.++...+ +.+.++.+.+.......++
T Consensus        98 ~~~g-~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~---~~~dp~G~-iP~~lvn~~~~~~~~~~l~  171 (189)
T 3qsz_A           98 AGDG-AITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQ---MHASPGGS-IPSWLANQTVVETPFGTLK  171 (189)
T ss_dssp             CTTS-CEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEE---EEECSCSS-SCHHHHHHTTTHHHHHHHH
T ss_pred             CCCC-eEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEE---EEeCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence            3344 455555544455664322    23468899999 8889999999   88887652 2244444444444444444


Q ss_pred             HHHHHH
Q 009741          495 LMLETA  500 (527)
Q Consensus       495 ~~~~~~  500 (527)
                      .+-+.+
T Consensus       172 ~L~k~~  177 (189)
T 3qsz_A          172 ALRSHL  177 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            433333

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=86.60  E-value=17  Score=33.36  Aligned_cols=148  Identities=10%  Similarity=0.021  Sum_probs=74.8

Q ss_pred             eeeeeeecCHHHHHHHh--cCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecC---CCCCCcceeEeEE
Q 009741          339 IYNDVFPCTAEQFFTLL--FSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK---SPIYPRDTAMTES  413 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~l--f~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~---~~~gpk~~~~~~~  413 (527)
                      -...+++++++++|+++  +.  .....++-.......+.    +..++   .+ .+.|.....   .++.|+.-  ...
T Consensus        70 k~~~~v~~~~~~v~~~l~~~d--~~~r~~Wd~~~~~~~vl----e~i~~---~~-~i~~~~~~~~~~~~v~~RDf--v~~  137 (231)
T 2r55_A           70 RGEGIVYGTLEEVWDCVKPAV--GGLRVKWDENVTGFEII----QSITD---TL-CVSRTSTPSAAMKLISPRDF--VDL  137 (231)
T ss_dssp             EEEEEESSCHHHHHHHHCC----CCSHHHHCTTCSEEEEE----EECSS---SE-EEEEEECCCBTTTTBCCEEE--EEE
T ss_pred             EEEEEECCCHHHHHHHHHhhC--cchhhhhccccceeEEE----EEcCC---CE-EEEEEEeccccCCccCCCeE--EEE
Confidence            34567899999999999  73  32323322222111111    11111   12 233432111   12333321  111


Q ss_pred             EEEEEcCCCCeEEEEEeeeeCCCCCC-CeEEEE---EEEEEEeec--CCceEEEEEEeeeeEEEeecceeeeeeehhhHH
Q 009741          414 QHAVLSPDKKIFVFETVQQAHDVPFG-SYFEIH---GRWHLETIA--ENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVN  487 (527)
Q Consensus       414 Q~~~~~~~~~~~vi~~~~~~~dvPyg-d~F~v~---~r~~i~~~~--~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~  487 (527)
                      .......++.++++..+...+.+|-. ++-+++   +.|+|++.+  +++|+|...   ..++..+|.. +.++.+.+..
T Consensus       138 r~~~~~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~iP-~~lvn~~~~~  213 (231)
T 2r55_A          138 VLVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTF---FHTDLSGYLP-QNVVDSFFPR  213 (231)
T ss_dssp             EEEEECTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEE---ECEECCSSCC-HHHHHHHHHH
T ss_pred             EEEEEcCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEE---EEeCCCCCcc-HHHHHHHHhH
Confidence            22223344456666776766777754 434444   468999976  678999998   8888866532 4445544333


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 009741          488 KYKKEVELMLETARSYIKI  506 (527)
Q Consensus       488 ~~~~~~~~~~~~~~~~l~~  506 (527)
                      ...    .+++.+++.++.
T Consensus       214 ~~~----~~~~~Lr~~~~~  228 (231)
T 2r55_A          214 SMT----RFYANLQKAVKQ  228 (231)
T ss_dssp             HHH----HHHHHHHHHHHG
T ss_pred             hHH----HHHHHHHHHHHH
Confidence            443    444445555443

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=86.01  E-value=16  Score=31.63  Aligned_cols=150  Identities=11%  Similarity=0.158  Sum_probs=85.0

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (527)
                      ..+.+.++|++++|.++..|-...+.+.+ ..-...++.-+.|.     .+..|.++|..     -|| ..  ..++++.
T Consensus         6 ~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg-----~Gsir~~~~~~-----g~~-~~--~~kErl~   72 (159)
T 4a8u_A            6 ETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-----PGTIKKISFPE-----GFP-FK--YVKDRVD   72 (159)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSS-----TTCEEEEECCT-----TSS-CS--EEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCC-----CceEEEEEEec-----CCC-cc--EEEEEEE
Confidence            34568899999999999654223344444 23455556677763     25779888752     233 22  3445555


Q ss_pred             E-cCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHH
Q 009741          418 L-SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  496 (527)
Q Consensus       418 ~-~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~  496 (527)
                      . .+++..|.....  --|++-...=+....+.+.+.++++|.++..     .+|.+-.  ...+.-..++..++....+
T Consensus        73 ~iD~~~~~~~y~ii--egd~l~~~~~~y~~ti~v~p~~~ggs~v~wt-----~~y~~~~--~~~~~~~~~k~~~~~~~~~  143 (159)
T 4a8u_A           73 EVDHTNFKYSYSVI--EGGPVGDTLEKISNEIKIVATPNGGSILKIN-----NKYHTKG--DHEVKAEQIKASKEMGETL  143 (159)
T ss_dssp             EEETTTTEEEEEEE--EETTCBTTEEEEEEEEEEEECTTSCEEEEEE-----EEEEESS--SCCC-CHHHHHHHHHHHHH
T ss_pred             EEccccCEEEEEEe--eCCCCccceEEEEEEEEEEECCCCceEEEEE-----EEEEECC--CCcCCHHHHHHHHHHHHHH
Confidence            3 333344433222  2233312233444566677777778877666     4454411  1122333345567788889


Q ss_pred             HHHHHHHHhhcCCC
Q 009741          497 LETARSYIKICTSG  510 (527)
Q Consensus       497 ~~~~~~~l~~~~~~  510 (527)
                      ++.+..+|-++.+.
T Consensus       144 ~k~ie~yll~np~~  157 (159)
T 4a8u_A          144 LRAVESYLLAHSDA  157 (159)
T ss_dssp             HHHHHHHHHHCTTT
T ss_pred             HHHHHHHHhhChhh
Confidence            99999999877654

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=85.74  E-value=17  Score=31.41  Aligned_cols=137  Identities=12%  Similarity=0.168  Sum_probs=70.7

Q ss_pred             eeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEE-ecCCCCCCcceeEeEEEEEEEc
Q 009741          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS-LCKSPIYPRDTAMTESQHAVLS  419 (527)
Q Consensus       341 ~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~-~~~~~~gpk~~~~~~~Q~~~~~  419 (527)
                      ..+.+.|++++|.++=+  -.-|..++     .  ...||...++ + ..|   ... .+  .+|+..-.-.-+-++...
T Consensus        12 s~~I~ap~e~v~~lv~D--ve~w~~~y-----p--~~~p~~~~~~-~-~~~---~~~a~l--~vg~~~~~~~~~s~~~~~   75 (161)
T 3p9v_A           12 DLEIPASYDEVFDLLAD--VPKSASHF-----P--KVDKLVDLGN-N-AYR---WEMEKV--GVDKHAIQSVYACTYHAD   75 (161)
T ss_dssp             EEEESSCHHHHHHHHTC--HHHHHTTS-----T--TEEEEEEEET-T-EEE---EEECCB--SSGGGCBCCEEEEEEEEE
T ss_pred             EEEEcCCHHHHHHHHhC--hhhhHhhC-----C--CeEEEEEcCC-C-ceE---EEEEEE--eeeeEEEEEEEEEEEEEc
Confidence            35789999999999842  11111111     1  1345655544 3 222   222 22  255543211222223333


Q ss_pred             CCCCeEEEEEeeeeCCCCCCCe-EEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHH
Q 009741          420 PDKKIFVFETVQQAHDVPFGSY-FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLE  498 (527)
Q Consensus       420 ~~~~~~vi~~~~~~~dvPygd~-F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~  498 (527)
                      +++..+.++..    +   |+- =....+|.+++.++++|+|...   ...+|..  .+.++++...-.-..+.++.+++
T Consensus        76 ~~~~~I~~~~~----~---g~~~~~l~g~w~f~p~~~g~t~V~~~---~~~e~~~--pl~~ll~~~~~~~~~~~~~~~v~  143 (161)
T 3p9v_A           76 KEAGKITWSPI----K---GEGNGVVSGSWTLSAKGDNATAVKFQ---TSAELTV--PLPSLLKLAISPVIKHEFNSLVD  143 (161)
T ss_dssp             TTTTEEEEEEC----T---TSTTEEEEEEEEEEESSSSCEEEEEE---EEEEEEE--CSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEe----c---CccceeEEEEEEEEECCCCeEEEEEE---EEEEEcC--cchHHHHHHHHHHHHHHHHHHHH
Confidence            43445544332    2   443 3567899999999888999999   8888863  12223333222233444455555


Q ss_pred             HHHHHHh
Q 009741          499 TARSYIK  505 (527)
Q Consensus       499 ~~~~~l~  505 (527)
                      ...+.++
T Consensus       144 af~~ra~  150 (161)
T 3p9v_A          144 TYMANLK  150 (161)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=85.44  E-value=3.2  Score=38.89  Aligned_cols=79  Identities=6%  Similarity=0.013  Sum_probs=50.0

Q ss_pred             CCCCeEEEEEeeeeCCCCCCCe---EEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHH
Q 009741          420 PDKKIFVFETVQQAHDVPFGSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  496 (527)
Q Consensus       420 ~~~~~~vi~~~~~~~dvPygd~---F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~  496 (527)
                      .++.++++.....-+++|-.++   ....+.|.|++.++++|+|...   +.++..+|.  =..+ +.+.   ....-..
T Consensus       147 ~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~---~~~Dp~G~i--P~~l-n~~~---~~~~~~~  217 (237)
T 2pso_A          147 PKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHI---CRIDLKGHS--PEWY-SKGF---GHLCAAE  217 (237)
T ss_dssp             GGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEE---EEECCSSSC--TTTT-TTHH---HHHHHHH
T ss_pred             CCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEE---EEeCCCCCc--hHHH-HHHH---HHHHHHH
Confidence            3456666666766677886632   2356899999999999999999   888886532  2223 3222   2222235


Q ss_pred             HHHHHHHHhhc
Q 009741          497 LETARSYIKIC  507 (527)
Q Consensus       497 ~~~~~~~l~~~  507 (527)
                      +..+++.++..
T Consensus       218 l~~LR~~~~~~  228 (237)
T 2pso_A          218 VARIRNSFQPL  228 (237)
T ss_dssp             HHHHHHTTSCC
T ss_pred             HHHHHHHHHhh
Confidence            66666666553

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=85.39  E-value=17  Score=31.26  Aligned_cols=148  Identities=8%  Similarity=0.050  Sum_probs=83.4

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEE-
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV-  417 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~-  417 (527)
                      ..+.+.++|++++|.++-.|-...+.+++......++.-+.|.     .+..|.++|. +     |.....  .++++. 
T Consensus         6 ~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~-----~Gsir~~~~~-~-----G~~~~~--~kErl~~   72 (155)
T 1icx_A            6 ENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGG-----PGTIKKIIAI-H-----DGHTSF--VLHKLDA   72 (155)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSS-----TTCEEEEEEE-S-----SSSEEE--EEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCC-----CCeEEEEEEe-c-----CCccee--EEEEEEE
Confidence            4567899999999999863222234555544444555566662     2567999886 2     322222  334444 


Q ss_pred             EcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHH
Q 009741          418 LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELML  497 (527)
Q Consensus       418 ~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~  497 (527)
                      ..+++..|.....-  -|+.-...=+....|.+.+.++++|.++..     ++|.+..-.   ..-..++..++.+..++
T Consensus        73 ~D~~~~~~~y~iie--Gd~~~~~~~~~~~~~~v~~~~~~gs~v~w~-----~~y~~~~~~---~~~~~~~~~~~~~~~~~  142 (155)
T 1icx_A           73 IDEANLTYNYSIIG--GEGLDESLEKISYESKILPGPDGGSIGKIN-----VKFHTKGDV---LSETVRDQAKFKGLGLF  142 (155)
T ss_dssp             EEGGGTEEEEEEEE--ETTSCTTEEEEEEEEEEEECGGGCEEEEEE-----EEEEESSSS---CCHHHHTTHHHHHHHHH
T ss_pred             EeccCCEEEEEEEe--cCCCccceEEEEEEEEEEecCCCCEEEEEE-----EEEEECCCC---CCHHHHHHHHHHHHHHH
Confidence            33333443332221  232212344456677778876667877666     445542211   22223334478889999


Q ss_pred             HHHHHHHhhcCC
Q 009741          498 ETARSYIKICTS  509 (527)
Q Consensus       498 ~~~~~~l~~~~~  509 (527)
                      +.++++|-.+.+
T Consensus       143 k~ie~yll~~p~  154 (155)
T 1icx_A          143 KAIEGYVLAHPD  154 (155)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCC
Confidence            999999987753

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=84.85  E-value=6.8  Score=36.04  Aligned_cols=145  Identities=8%  Similarity=0.030  Sum_probs=71.5

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCC--CCCcceeEeEEEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSP--IYPRDTAMTESQHA  416 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~--~gpk~~~~~~~Q~~  416 (527)
                      -+..+++++++++|++++....  -.++     +.++.....-..-  +..+.-+.|..+-..+  +.|+.--  .....
T Consensus        70 k~~~~v~~~~~~v~~~l~d~~~--r~~W-----d~~~~~~~vle~i--d~~~~I~y~~~~~~~~~~v~~RDfv--~~r~~  138 (224)
T 1jss_A           70 KAQGVMDDVVNNVIDHIRPGPW--RLDW-----DRLMTSLDVLEHF--EENCCVMRYTTAGQLLNIISPREFV--DFSYT  138 (224)
T ss_dssp             EEEEEESSCHHHHHHHHSSSTT--HHHH-----CSSEEEEEEEEEC--STTEEEEEEEECCBTTTTBCCEEEE--EEEEE
T ss_pred             EEEEEEeCCHHHHHHHHhCccc--cccc-----ccceeeEEEEEEc--CCCeEEEEEEcccccCCCCCCCeEE--EEEEE
Confidence            3456789999999999986321  1111     2222222221111  1223323333321111  3444321  11222


Q ss_pred             EEcCCCCeEEEEEeeeeCCCCCCCeEEEE---EEEEEEeecC--CceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHH
Q 009741          417 VLSPDKKIFVFETVQQAHDVPFGSYFEIH---GRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK  491 (527)
Q Consensus       417 ~~~~~~~~~vi~~~~~~~dvPygd~F~v~---~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~  491 (527)
                      .... +.++++..+..-++.|- ++=+++   +.|+|++..+  ++|+|...   +.++..+|.. ++++.+.+..    
T Consensus       139 ~~~~-~~~vi~~~Sv~hp~~~~-g~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~iP-~~lvn~~~~~----  208 (224)
T 1jss_A          139 VGYE-EGLLSCGVSVEWSETRP-EFVRGYNHPCGWFCVPLKDSPSQSLLTGY---IQTDLRGMIP-QSAVDTAMAS----  208 (224)
T ss_dssp             EEET-TEEEEEEEECCCCCCCT-TSEECEECSEEEEEEEETTEEEEEEEEEE---ECEECCSCCC-HHHHHHHHHH----
T ss_pred             EEcC-CeEEEEEeeeecCCCCC-CCEEEEecccEEEEEEcCCCCCceEEEEE---EEeCCCCCcc-HHHHHHHHHH----
Confidence            2333 33554444444466653 555554   6799999865  48999888   8888766432 3444443333    


Q ss_pred             HHHHHHHHHHHHH
Q 009741          492 EVELMLETARSYI  504 (527)
Q Consensus       492 ~~~~~~~~~~~~l  504 (527)
                      ..-..++.+++.+
T Consensus       209 ~~~~~~~~Lr~~~  221 (224)
T 1jss_A          209 TLANFYSDLRKGL  221 (224)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHH
Confidence            3334444444444

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=84.78  E-value=19  Score=31.15  Aligned_cols=150  Identities=9%  Similarity=0.015  Sum_probs=84.4

Q ss_pred             eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEE
Q 009741          338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (527)
Q Consensus       338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (527)
                      ...+.+.++|++++|.++-.|-...+.+++......++.-+.|.     .+..|.++|. +     |.....  .++++.
T Consensus         6 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg-----~Gsir~~~~~-~-----g~~~~~--~kErl~   72 (158)
T 2qim_A            6 FQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGG-----PGTIKKLTFI-E-----GGESKY--VLHKIE   72 (158)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSS-----TTCEEEEEEE-E-----TTEEEE--EEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCC-----CCeEEEEEEc-C-----CCccee--EEEEEE
Confidence            34567899999999999863222234555544444555566662     2578999986 2     322112  334444


Q ss_pred             -EcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHH
Q 009741          418 -LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  496 (527)
Q Consensus       418 -~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~  496 (527)
                       ..+++..|.....-  -++.-...=+....|.+.+.++++|.++..     ++|.+..  .....-..++..++.+..+
T Consensus        73 ~~D~~~~~~~y~iie--G~~~~~~~~~~~~~~~v~~~~~~gs~v~wt-----~~y~~~~--~~~~~~~~~~~~~~~~~~~  143 (158)
T 2qim_A           73 AIDEANLGYNYSIVG--GVGLPDTIEKISFETKLVEGANGGSIGKVT-----IKIETKG--DAQPNEEEGKAAKARGDAF  143 (158)
T ss_dssp             EEEGGGTEEEEEEEE--ESSCCCSEEEEEEEEEEEECSTTCEEEEEE-----EEEEEST--TCCCCHHHHHHHHHHHHHH
T ss_pred             EEecCCCEEEEEEEe--ccCCccceEEEEEEEEEEecCCCCEEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHH
Confidence             33333443332221  222212233456677788876667877666     4454421  1112222333457888999


Q ss_pred             HHHHHHHHhhcCC
Q 009741          497 LETARSYIKICTS  509 (527)
Q Consensus       497 ~~~~~~~l~~~~~  509 (527)
                      ++.++++|-.+.+
T Consensus       144 ~k~ie~yll~~p~  156 (158)
T 2qim_A          144 FKAIESYLSAHPD  156 (158)
T ss_dssp             HHHHHHHHHHCSS
T ss_pred             HHHHHHHHHhCcC
Confidence            9999999987743

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=83.46  E-value=14  Score=34.01  Aligned_cols=56  Identities=11%  Similarity=0.068  Sum_probs=39.7

Q ss_pred             EEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcCCC----CCCceeEEEEEEcccC
Q 009741           47 KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWDII----WKSTVLGSVIVTVESE  102 (527)
Q Consensus        47 ~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d~~----~~d~~iG~~~i~l~~l  102 (527)
                      ..+|-+...+.+|.|+|++.+.+...   ...|.|++++...-    ..+..+|-+.++|-.-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            35677888899999999999998542   34599999986532    1234567776666544

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=82.86  E-value=22  Score=30.60  Aligned_cols=149  Identities=8%  Similarity=0.027  Sum_probs=83.7

Q ss_pred             eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEE
Q 009741          338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (527)
Q Consensus       338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (527)
                      ...+.+.++|++++|.++-.|-...+.+++......++.-+.|.     .+..|.++|. +     |....  .-++++.
T Consensus         5 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~-----~Gsir~~~~~-~-----G~~~~--~~kErl~   71 (157)
T 1tw0_A            5 FRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGG-----VGTIKKITAN-E-----GDKTS--FVLQKVD   71 (157)
T ss_dssp             EEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSS-----TTCEEEEEEE-E-----TTEEE--EEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCC-----CCeEEEEEee-C-----CCccc--eEEEEEE
Confidence            34567899999999999763222234444433344445556662     2567999986 2     32211  2345555


Q ss_pred             -EcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHH
Q 009741          418 -LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  496 (527)
Q Consensus       418 -~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~  496 (527)
                       ..+++..|.....  --|+.-...=+....|.+.+.++++|.++..     ++|.+..  .....-..++..++.+..+
T Consensus        72 ~~D~~~~~~~y~ii--eGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~-----~~y~~~~--~~~~~~~~~~~~~~~~~~~  142 (157)
T 1tw0_A           72 AIDEANLGYDYSIV--GGTGLPESLEKLSFETKVVAGSGGGSISKVT-----LKFHTKG--DAPLSDAVRDDALAKGAGF  142 (157)
T ss_dssp             EEETTTTEEEEEEE--ECTTSCTTEEEEEEEEEEEECSSSSEEEEEE-----EEEEEST--TCCCCHHHHHHHHHHHHHH
T ss_pred             EEeccCCEEEEEEE--ecCCCccceEEEEEEEEEEecCCCCEEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHH
Confidence             3344444433322  2233222344556677788876667877666     4454421  0112222333457888999


Q ss_pred             HHHHHHHHhhcC
Q 009741          497 LETARSYIKICT  508 (527)
Q Consensus       497 ~~~~~~~l~~~~  508 (527)
                      ++.++++|-.+.
T Consensus       143 ~k~ie~yll~~p  154 (157)
T 1tw0_A          143 FKAIEGYVLANP  154 (157)
T ss_dssp             HHHHHHHHHHCG
T ss_pred             HHHHHHHHHhCc
Confidence            999999987764

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=81.87  E-value=9.7  Score=40.92  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             cccCcccceeEeE-----EEeeeeccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccc---c-ccCcEEE
Q 009741          169 FNLLPDEFVELSY-----SCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA---F-INPAITI  239 (527)
Q Consensus       169 F~lp~~e~l~~~f-----~c~l~~~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~---~-~~~~i~i  239 (527)
                      |.|-++|.++..-     .|.+.  -...|.||+|..++.|.+..-.....+-||+.-|..|+|..+.   . ....|.|
T Consensus        79 ~~LLPGE~v~~~~~~V~~~~p~~--~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I  156 (657)
T 1lw3_A           79 PPLLPGENIKDMAKDVTYICPFT--GAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLET  156 (657)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTT--EEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEE
T ss_pred             CccCCCeeEEEEeCCEEEecCCC--CceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEE
Confidence            3455677666442     23222  2467999999999999986433345688999999999997532   1 1226888


Q ss_pred             EEec
Q 009741          240 ILRM  243 (527)
Q Consensus       240 ~~~~  243 (527)
                      .+++
T Consensus       157 ~CKD  160 (657)
T 1lw3_A          157 VCKD  160 (657)
T ss_dssp             EETT
T ss_pred             EecC
Confidence            8863

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=81.59  E-value=10  Score=39.85  Aligned_cols=73  Identities=16%  Similarity=0.171  Sum_probs=48.3

Q ss_pred             ccCcccceeEeEEEe-eee--ccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccc---cc-cCcEEEEEe
Q 009741          170 NLLPDEFVELSYSCV-IER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA---FI-NPAITIILR  242 (527)
Q Consensus       170 ~lp~~e~l~~~f~c~-l~~--~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~---~~-~~~i~i~~~  242 (527)
                      .|-++|.+...-.-. +..  .-...|.||+|..++.|.+..-.....+-||+.-|..|+|..+.   .- ...|.|.++
T Consensus         8 ~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~CK   87 (528)
T 1zsq_A            8 PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCK   87 (528)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEET
T ss_pred             ccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEcc
Confidence            345666555432211 111  12468999999999999986433355789999999999997532   11 226888886

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=80.07  E-value=4.5  Score=42.30  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             cccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEEEEEec
Q 009741          189 FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRM  243 (527)
Q Consensus       189 ~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~  243 (527)
                      ....|.||+|..++.|.+.   .....-||+.-|..|+|.....-...|.|.+++
T Consensus        23 ~~~~GtL~lTn~~LiF~~~---~~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKD   74 (512)
T 2yf0_A           23 KSLTGTLYLTATHLLFIDS---HQKETWILHHHIASVEKLALTTSGCPLVIQCKN   74 (512)
T ss_dssp             -CCEEEEEECSSEEEEEES---SSCEEEEEGGGEEEEEECCCBTTBEEEEEEETT
T ss_pred             CceeEEEEEECCEEEEeCC---CCCceEecccceeEEEEecCCCCCceEEEEecC
Confidence            4567999999999999993   244578999999999997643222368888863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	527
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-16
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	7e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	6e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-12
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-12
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-12
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-11
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	3e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	8e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-10
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	8e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-09
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-09
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	5e-09
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-08

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI 126
            + VT++D D       LG V + + S        Y L +        G + L +  I
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI 124

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.1 bits (176), Expect = 7e-16
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 75  QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
           ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ + +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +   ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 76  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNL---IGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +        ++ +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D      + +T+ D + +     LG+   TV S   G+   V +   +   ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF-NQVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 11  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 67

Query: 62  GEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +    ++   +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 68  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 127

Query: 118 QVC 120
           Q+ 
Sbjct: 128 QIA 130

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYA---IITCGSEKRFSSMVPGSR 57
                 D Q N    + + ++ A  L   ++ GTSDPY    ++    +K  + +   + 
Sbjct: 24  QYSLDYDFQNNQ---LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80

Query: 58  YPMWGEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
            P++ E+F F V    +    +++ +YD+D   K  ++G   V + +   G     W  L
Sbjct: 81  NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

Query: 113 DS 114
            S
Sbjct: 141 QS 142

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSVD 70
           + + +L AK+L         +PY  I          KR +  V  +  P W + F +S  
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 71  ELP----VQIIVTIYDWDIIWKS--TVLGSVIVTVES-EGQTGAVWYTL 112
                    + +T++D   + +     LG +++ +E+        WY L
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 31  LNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85
            +  S P+  +           +       + YP W   F+  + E  V I + +     
Sbjct: 20  EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV-IQIVLMRAAE 78

Query: 86  IWKSTV---LGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
              S V   +  +    +        W  L  P  +V + ++
Sbjct: 79  DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-PQAKVLMCVQ 119

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 8e-11
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 16  IKLELLAAKNL--IGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNF 67
           +++ +++ + L  +  N N   DP  I+           ++ + +      P W  EF F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 68  SV-DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118
            V       +   + D+D   K+  +G   +      + G     L S +G 
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN-SLKQGYRHVHLLSKNGD 116

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++   +L   + NG SDP+  +          K  + +   +  P + EEF + + 
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQVC 120
             D     + ++++D+DI   +  +G   + + ++G+    WY    +   ++ 
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 130

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 8e-10
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITC--------------GSEKRFSSMVPGSRYPMW 61
           + + +L A+NL+  + NG SDP+  +                   KR +  V  S  P W
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 62  GEEFNFSV----DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSP 115
            +   +        +   + VT++D+D    +  LG V++ + S         WY L   
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139

Query: 116 S 116
           +
Sbjct: 140 T 140

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+ + +  AK           + Y  +   + K  +  V GS  P W ++F F ++ L +
Sbjct: 3   LLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDL 58

Query: 75  QIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGAVWYTLDSPS----GQVC 120
            + V +++  +IW     TV   +    +S  +    W TLDS +     ++C
Sbjct: 59  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 111

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           +++ +++AK            PY  +T   + + +     +  P W +     V     +
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSK 66

Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLD 113
           +   ++    +    +LG+  + +         +   V  TL 
Sbjct: 67  LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 109

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFN 66
           +A L+ + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 67  FSV---DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTG-AVWYTL-DSPSGQVC 120
           F V       V + + + D+D I  + V+G   V  E+    G   W  +  +P   V 
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.7 bits (128), Expect = 4e-09
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-----SSMVPGSRYPMWGEEFNFSVD 70
           + + +L AKNL   ++ G SDPY  I      +      +++   +  P + E F+F V 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 71  ELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
              +Q   ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE----SEGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E    +  +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 16  IKLELLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV-- 69
             + +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPSG 117
                 + +  TI  +D   +  ++G V++ +   E   G +    +  SG
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	527
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.83
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.8
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.76
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.73
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.73
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.7
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.67
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.67
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.66
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.66
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.66
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.59
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.59
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.57
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.55
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.54
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.54
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.49
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.43
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.25
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	95.05
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	95.03
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	94.54
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	93.37
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	93.32
d1fm4a_	159	Major tree pollen allergen {European white birch (	93.05
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	91.96
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	91.93
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	90.2
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	89.58
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	89.31
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	88.62
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	88.55
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	87.71

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=161.50  Aligned_cols=115  Identities=23%  Similarity=0.435  Sum_probs=104.3

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~   91 (527)
                      .-|.|.|+|++|++|++++..|.+||||++.+++++++|++++++.||.|+|+|.|.+.++...|.|+|||++.+++|++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~   83 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDF   83 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcce
Confidence            45899999999999999999999999999999999999999999999999999999998878889999999999999999


Q ss_pred             eEEEEEEcccCCCcccEEEEccC------CCceEEEEEEEe
Q 009741           92 LGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (527)
Q Consensus        92 iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~l~~~  126 (527)
                      ||++.++|.++......|+.|..      ..|++++++++.
T Consensus        84 lG~~~i~l~~l~~~~~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          84 LGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             CCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEEEHHHCCCCCceEEEccccCCCCceeEEEEEEEEEE
Confidence            99999999999777788999854      237877777765

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=2.2e-19  Score=156.18  Aligned_cols=120  Identities=22%  Similarity=0.383  Sum_probs=103.6

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009741            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (527)
Q Consensus         9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (527)
                      .....|.|.|+|++|++|+.++..|.+||||++.++....+|++++ ++.||.|||+|.|.+.+....|.|+|||++.++
T Consensus         5 ~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCC
Confidence            4456799999999999999999999999999999999899999986 589999999999999877778999999999999


Q ss_pred             CCceeEEEEEEcccC---CCcccEEEEccCC---CceEEEEEEEeec
Q 009741           88 KSTVLGSVIVTVESE---GQTGAVWYTLDSP---SGQVCLHIKTIKL  128 (527)
Q Consensus        88 ~d~~iG~~~i~l~~l---~~~~~~w~~L~~~---~G~i~l~l~~~~~  128 (527)
                      +|++||++.|+|.++   +.....|+.|...   .|+|++.+++.+.
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence            999999999999987   3445679998532   2777777777653

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.76  E-value=2.9e-18  Score=148.99  Aligned_cols=114  Identities=18%  Similarity=0.250  Sum_probs=99.3

Q ss_pred             ceEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCCcEEEEEE
Q 009741           13 AYLIKLELLAAKNLIGAN-----------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTI   80 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d-----------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V   80 (527)
                      .|.|.|+|++|++|++.+           ..+.+||||++.++... .+|+++.++.+|.|||+|.|.+.+ ...|.|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V   83 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence            589999999999998753           36678999999999866 489999999999999999999975 57799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC--C--CcccEEEEccCCCceEEEEEEEeec
Q 009741           81 YDWDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDSPSGQVCLHIKTIKL  128 (527)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~l--~--~~~~~w~~L~~~~G~i~l~l~~~~~  128 (527)
                      ||++.+++|++||.+.|+|.++  .  ...+.|++|.+ .|++++.+.+.+.
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-~G~v~l~v~~~~~  134 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSGS  134 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-CcEEEEEEEEEeC
Confidence            9999999999999999999987  2  33568999986 7999999888754

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=8.7e-18  Score=145.16  Aligned_cols=103  Identities=27%  Similarity=0.483  Sum_probs=91.1

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEecCC--CcEEEEEEEEcC
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWD   84 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~~~V~d~d   84 (527)
                      ..+.|.|+|++|++|+.++..|.+||||++++     +..+++|++++++.||.|||+|.|.+...  ...|.|+|||++
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            35789999999999999999999999999998     45578999999999999999999998653  346999999999


Q ss_pred             CCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009741           85 IIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l-~~~~~~w~~L~~  114 (527)
                      .+++|++||++.|+|.++ ....+.||+|.+
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~  123 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKAGVDGWFKLLS  123 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCcEeEEEEEeHHHcCCCCCCeEEECCC
Confidence            999999999999999998 445678999975

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8.6e-18  Score=143.93  Aligned_cols=112  Identities=19%  Similarity=0.331  Sum_probs=92.1

Q ss_pred             ceEEEEEEEEeecCCCCC---CCCCCCcEEEEEECC---eEEEeeeecCCCCCeeccEEEEEecCCC-cEEEEEEEEcCC
Q 009741           13 AYLIKLELLAAKNLIGAN---LNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDI   85 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d---~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~~~V~d~d~   85 (527)
                      .+.|+|+|++|++|+...   ..|.+||||++.++.   ++.+|+++.++.||.|||+|.|.+.+.. ..|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            478999999999998743   467899999999864   5679999999999999999999987654 569999999987


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEE
Q 009741           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKT  125 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~l~l~~  125 (527)
                      . +|++||++.++|.++  +...+.||+|.+. .|.+.+.+++
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~  123 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEE
Confidence            5 688999999999998  5566789999752 3455555444

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.6e-17  Score=138.94  Aligned_cols=89  Identities=11%  Similarity=0.231  Sum_probs=82.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i   92 (527)
                      .+.|.|+|++|++++..+..+.+||||++.++++.++|++++++.||.|||.|.|.+.+ ...|.|+|||++.+++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            47899999999999998888999999999999999999999999999999999999875 57899999999999999999


Q ss_pred             EEEEEEcccC
Q 009741           93 GSVIVTVESE  102 (527)
Q Consensus        93 G~~~i~l~~l  102 (527)
                      |++.++|.++
T Consensus        84 G~~~i~L~~l   93 (133)
T d2nq3a1          84 GTAALDIYET   93 (133)
T ss_dssp             EEEEEEHHHH
T ss_pred             EEEEEEHHHh
Confidence            9999999886

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.4e-16  Score=139.52  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=90.7

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCC
Q 009741           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (527)
Q Consensus        12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~   85 (527)
                      ..+.|.|+|++|++|++++..|.+||||++.+   +....+|++++++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            45689999999999999999999999999998   4556799999999999999999998743   24679999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (527)
Q Consensus        86 ~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~  114 (527)
                      ++++++||++.|+|.++  +.....||+|..
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            99999999999999998  455678999974

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.4e-16  Score=134.68  Aligned_cols=97  Identities=23%  Similarity=0.405  Sum_probs=84.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (527)
Q Consensus        14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG   93 (527)
                      +.|.|+|++|++|.+++   .+||||.+.+++.+.+|.++++ .||.|||+|.|.+.++...|.|+|||++.. +|++||
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            57999999999999866   6899999999999999998874 599999999999988888899999999876 689999


Q ss_pred             EEEEEcccC----CCcccEEEEccCC
Q 009741           94 SVIVTVESE----GQTGAVWYTLDSP  115 (527)
Q Consensus        94 ~~~i~l~~l----~~~~~~w~~L~~~  115 (527)
                      ++.|+|+++    ......||+|..+
T Consensus        77 ~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          77 TVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEehhhccCCCCCCCeeEECCcc
Confidence            999999998    2345689999763

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.5e-16  Score=136.97  Aligned_cols=105  Identities=23%  Similarity=0.368  Sum_probs=89.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (527)
Q Consensus        10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~   83 (527)
                      .+..+.|.|+|++|++|+.++..|.+||||++++   ..++++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        14 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~   93 (130)
T d1dqva1          14 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDF   93 (130)
T ss_dssp             CSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEEC
T ss_pred             ECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEc
Confidence            3567899999999999999999999999999998   34568999999999999999999997542   35699999999


Q ss_pred             CCCCCCceeEEEEEEcccC----CCcccEEEEccC
Q 009741           84 DIIWKSTVLGSVIVTVESE----GQTGAVWYTLDS  114 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l----~~~~~~w~~L~~  114 (527)
                      +.++++++||++.|++...    ......|++|.+
T Consensus        94 ~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          94 DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             CSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            9999999999999975432    334557999975

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=8e-16  Score=132.41  Aligned_cols=104  Identities=21%  Similarity=0.310  Sum_probs=83.7

Q ss_pred             eEEEEEEEEeecCCC--CCCCCCCCcEEEEEE-----CCeEEEeeeecCC-CCCeeccEEEEEecCC-CcEEEEEEEEcC
Q 009741           14 YLIKLELLAAKNLIG--ANLNGTSDPYAIITC-----GSEKRFSSMVPGS-RYPMWGEEFNFSVDEL-PVQIIVTIYDWD   84 (527)
Q Consensus        14 g~L~V~vi~A~~L~~--~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t-~nP~W~e~f~f~v~~~-~~~L~~~V~d~d   84 (527)
                      ..|.|+|++|++|+.  .+..+.+||||++.+     +..+.+|++++++ +||.|||+|.|.+..+ ...|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999964  456788999999997     3567789988655 7999999999997553 456999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (527)
Q Consensus        85 ~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (527)
                      ..++|++||++.|+|..+..+ .+|++|..+.|+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g-~~~~~L~~~~g~  116 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  116 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             CCCCCcEEEEEEEEEeccCCC-CEEEECCCCCcC
Confidence            999999999999999999654 679999665554

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=3.9e-17  Score=142.80  Aligned_cols=104  Identities=25%  Similarity=0.421  Sum_probs=88.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eEEEeeeecCCCCCeeccEEEEEecC----CCc
Q 009741           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--------------EKRFSSMVPGSRYPMWGEEFNFSVDE----LPV   74 (527)
Q Consensus        13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~--------------~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~   74 (527)
                      .+.|.|+|++|++|++++..|.+||||++++..              .+++|++++++.||.|||.|.|..-.    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            468999999999999999999999999999731              12468999999999999999997322    355


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 009741           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (527)
Q Consensus        75 ~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (527)
                      .|.|+|||++.++++++||++.|+|.++  ......||+|.++.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            7999999999999999999999999998  45567999998743

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.4e-15  Score=128.24  Aligned_cols=103  Identities=23%  Similarity=0.422  Sum_probs=83.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~   81 (527)
                      +..+.|.|+|++|+||++.+..+.+||||++.+     ...+++|++++++.+|.|||+|.|. +..   ....|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            445789999999999999999999999999997     2356789999999999999999997 432   2346999999


Q ss_pred             EcCCCC--CCceeEEEEEEcccC-CCcccEEEEcc
Q 009741           82 DWDIIW--KSTVLGSVIVTVESE-GQTGAVWYTLD  113 (527)
Q Consensus        82 d~d~~~--~d~~iG~~~i~l~~l-~~~~~~w~~L~  113 (527)
                      |++..+  ++++||++.++|+++ ......||+|+
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L~  125 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  125 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeCc
Confidence            999764  456999999999998 34556899984

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.1e-15  Score=127.95  Aligned_cols=102  Identities=16%  Similarity=0.191  Sum_probs=86.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~   83 (527)
                      ...+.|.|+|++|++|.   ..|.+||||++.+.    ....+|++++++.+|.|||.|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          23 CQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            34678999999999994   35789999999983    2346899999999999999999998542   45699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009741           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (527)
                      +.++++++||++.|+|.++  ....+.|++|.++
T Consensus       100 ~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             cccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            9999999999999999998  4567899999874

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.2e-15  Score=132.33  Aligned_cols=104  Identities=17%  Similarity=0.332  Sum_probs=88.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|+||+..+..+.+||||++.+     ...+++|++++++.+|.|||+|.|.+...   ...|.|.|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            456899999999999999998999999999997     23456899999999999999999998542   3569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~  114 (527)
                      ++.++++++||++.+++..+......|++|.+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~  123 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGERLKHWYECLK  123 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEeCccccCcchhhhhhHhh
Confidence            99999999999999999887545566777643

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.6e-15  Score=131.69  Aligned_cols=102  Identities=19%  Similarity=0.382  Sum_probs=78.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GS---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|++|++++..+.+||||++.+  +.   .+++|++++++.||.|||+|.|.+...   ...|.|.|||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d   91 (138)
T d1w15a_          12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD   91 (138)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEe
Confidence            456789999999999999998999999999997  22   345799999999999999999997542   3359999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 009741           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L  112 (527)
                      ++.++++++||++.|++...+....+|+.|
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~l  121 (138)
T d1w15a_          92 SERGSRNEVIGRLVLGATAEGSGGGHWKEI  121 (138)
T ss_dssp             CCTTSCCEEEEEEEESTTCCSHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEEcchhCCchHHHHHHH
Confidence            999999999999999998754333344443

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.5e-14  Score=126.80  Aligned_cols=104  Identities=33%  Similarity=0.472  Sum_probs=87.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|+||+..+..+.+||||++++.  .   ..++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d  101 (157)
T d1uowa_          22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (157)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence            4568999999999999999989999999999973  2   234799999999999999999998643   3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 009741           83 WDIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l--------------~~~~~~w~~L~~  114 (527)
                      ++.++++++||++.|++...              .....+|++|.+
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            99999999999999999764              233457888865

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.6e-14  Score=122.98  Aligned_cols=92  Identities=20%  Similarity=0.320  Sum_probs=79.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCC-CCCcEEEEEE---CCeEEEeeeecCCCCCeeccEEEEE-ecCC---CcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g-~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~-v~~~---~~~L~~~V~d   82 (527)
                      .....|.|+|++|++|+.++..+ .+||||++.+   ....++|++++++.||.|||+|.|. +...   ...|.|+|||
T Consensus        19 ~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d   98 (138)
T d1ugka_          19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence            34578999999999999987665 4799999998   4567899999999999999999997 4322   3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccC
Q 009741           83 WDIIWKSTVLGSVIVTVESE  102 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l  102 (527)
                      ++.++++++||++.|+|.++
T Consensus        99 ~d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_          99 FDRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTC
T ss_pred             CCCCCCCcEEEEEEEEcccc
Confidence            99999999999999999998

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=8.4e-14  Score=117.99  Aligned_cols=103  Identities=15%  Similarity=0.262  Sum_probs=82.3

Q ss_pred             EEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009741           17 KLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (527)
Q Consensus        17 ~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~   91 (527)
                      .|.++.+..+  ....+.+||||.++++..     .++|+++++|+||.|||+|.|.+.+ ...|.|.|||+|    +++
T Consensus         8 ~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d~~   80 (123)
T d1bdya_           8 SFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----EDP   80 (123)
T ss_dssp             EEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----TEE
T ss_pred             EEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----ccc
Confidence            3444444444  335788999999998432     3468889999999999999999976 678999999986    679


Q ss_pred             eEEEEEEcccC-------CCcccEEEEccCCCceEEEEEEEee
Q 009741           92 LGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIK  127 (527)
Q Consensus        92 iG~~~i~l~~l-------~~~~~~w~~L~~~~G~i~l~l~~~~  127 (527)
                      +|.+.+.+..+       +...+.|++|.+ .|++++.+++..
T Consensus        81 ~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-~Gkl~l~v~~f~  122 (123)
T d1bdya_          81 MSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             cCccEEehhheeeccccCCCcccEEEeCCC-CEEEEEEEEEec
Confidence            99999999877       345678999985 899999998864

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=6.4e-15  Score=128.96  Aligned_cols=103  Identities=27%  Similarity=0.402  Sum_probs=85.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (527)
Q Consensus        11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d   82 (527)
                      +..+.|.|+|++|+||+..+..+.+||||++.+..     .+++|++++++.||.|||+|.|.+..   ....|.|.|||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            56689999999999999999899999999999743     24689999999999999999998753   23459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC-CcccEEEEcc
Q 009741           83 WDIIWKSTVLGSVIVTVESEG-QTGAVWYTLD  113 (527)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~l~-~~~~~w~~L~  113 (527)
                      ++.++++++||++.|++..+. .....|++|.
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~  128 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADPHGREHWAEML  128 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCHHHHHHHHTSS
T ss_pred             cCCCCCCcEEEEEEECchHcCchhhHHHHHHH
Confidence            999999999999999998762 2334566654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.9e-11  Score=100.39  Aligned_cols=95  Identities=17%  Similarity=0.263  Sum_probs=72.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEeeee--cCCCCCeeccE-EEEE-ecCCC-cEEEEEEEEc
Q 009741           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMV--PGSRYPMWGEE-FNFS-VDELP-VQIIVTIYDW   83 (527)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~------~~~~~T~~~--~~t~nP~W~e~-f~f~-v~~~~-~~L~~~V~d~   83 (527)
                      +|.|+|++|++|+..    ..||||++.+-      ..+.+|++.  .++.||.|||. |.+. +..+. ..|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999754    48999999972      233445443  66899999865 4443 44433 3699999997


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (527)
Q Consensus        84 d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (527)
                      +    +++||++.++|+.+..+ .+|++|..+.|+
T Consensus        78 d----~~~lG~~~ipl~~l~~G-yR~vpL~~~~g~  107 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG-YHHLCLHSESNM  107 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             C----CCEEEEEEEEcccCcCC-ceEEEccCCCcC
Confidence            5    68999999999999664 688999776665

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=95.05  E-value=0.28  Score=41.11  Aligned_cols=150  Identities=13%  Similarity=0.121  Sum_probs=89.1

Q ss_pred             eeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEc
Q 009741          341 NDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  419 (527)
Q Consensus       341 ~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  419 (527)
                      +...++|+++||++|+.|...++.+.. .....-++.-++|.+     +..|.++|...     || .  -..+|++...
T Consensus         8 E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~-----GsIr~~~~~~~-----~~-~--~~~KErie~i   74 (159)
T d1e09a_           8 EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGP-----GTIKKITFGEG-----SQ-Y--GYVKHKIDSI   74 (159)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSST-----TCEEEEEECCS-----SS-C--EEEEEEEEEE
T ss_pred             EEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCc-----CcEEEEEEcCC-----CC-c--EEEEEEEEEE
Confidence            456788999999999875334444443 334455666677742     56788887532     33 2  2345777743


Q ss_pred             CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHHH
Q 009741          420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  499 (527)
Q Consensus       420 ~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  499 (527)
                      ++.. ..+..+..--|++...+-++.....+...++++|.++..     ++|.+-.  ...+.-.-....++.+..+++.
T Consensus        75 D~~~-~~~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt-----~eYe~~~--~~~~~~e~~~~~~e~~~~~~K~  146 (159)
T d1e09a_          75 DKEN-YSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKST-----SHYHTKG--NVEIKEEHVKAGKEKASNLFKL  146 (159)
T ss_dssp             ETTT-TEEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEE-----EEEEECS--SCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccc-cEEEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHHHHH
Confidence            3322 233333333456544444555566667667788987776     3344311  1112222334567788889999


Q ss_pred             HHHHHhhcCCCC
Q 009741          500 ARSYIKICTSGG  511 (527)
Q Consensus       500 ~~~~l~~~~~~~  511 (527)
                      +..+|-+|....
T Consensus       147 iEayLlanp~~y  158 (159)
T d1e09a_         147 IETYLKGHPDAY  158 (159)
T ss_dssp             HHHHHHHCTTSC
T ss_pred             HHHHHhhChhhc
Confidence            999999987654

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.074  Score=42.95  Aligned_cols=54  Identities=13%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             ccceeEEeecceEEEEeccCCceeEEEEecccceeeeeccccccc----CcEEEEEec
Q 009741          190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN----PAITIILRM  243 (527)
Q Consensus       190 ~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~----~~i~i~~~~  243 (527)
                      ...|.+|+|..++.|.+..-.....+-||+.-|..|+|.......    ..|.|.+++
T Consensus        27 ~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKD   84 (125)
T d1zsqa1          27 AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD   84 (125)
T ss_dssp             EEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT
T ss_pred             ccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEecc
Confidence            457999999999999987655566788999999999987654321    278999863

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.057  Score=42.57  Aligned_cols=87  Identities=15%  Similarity=0.148  Sum_probs=60.1

Q ss_pred             ceeEeEEEeeee-ccccceeEEeecceEEEEeccCC--------------ceeEEEEecccceeeeecccccccCcEEEE
Q 009741          176 FVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFS--------------RQMKVIIPIGDIDEIQRSQHAFINPAITII  240 (527)
Q Consensus       176 ~l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~~~g--------------~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~  240 (527)
                      +++-+..|.|-. .....|++.|+.++++|.....-              ......+|+++|..|-+..-.+-..||+|-
T Consensus         2 pv~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif   81 (110)
T d1t77a2           2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF   81 (110)
T ss_dssp             CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEE
Confidence            466678898887 56688999999999999875210              123347999999999986644334599999


Q ss_pred             EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHH
Q 009741          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQ  278 (527)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~  278 (527)
                      +..              |. .| |-.|.+.+..-+++.
T Consensus        82 ~~~--------------~~-s~-~~~F~~~~~~~~v~~  103 (110)
T d1t77a2          82 MAN--------------RV-AV-MFNFPDPATVKKVVN  103 (110)
T ss_dssp             ETT--------------SC-EE-EEECSSHHHHHHHHH
T ss_pred             EcC--------------Cc-EE-EEEeCCHHHHHHHHH
Confidence            853              32 44 445766555544444

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.37  E-value=0.11  Score=42.10  Aligned_cols=81  Identities=16%  Similarity=0.266  Sum_probs=52.9

Q ss_pred             cceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeech
Q 009741          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR  270 (527)
Q Consensus       191 ~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r  270 (527)
                      -.|++|+|.+.|+|-.+.--....+.+||..|..++-... ++..+.+|+++....          .....++-.||-.-
T Consensus        43 ~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~-~~~ss~KI~l~l~~~----------~~~~~~vklsFr~g  111 (130)
T d2caya1          43 QRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSG-FLTRSPRLILFFKDP----------SSSTEFVQLSFRKS  111 (130)
T ss_dssp             SSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECS-SSSSSCEEEEEESSC----------SSTTCCEEEEESSS
T ss_pred             cCceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEcc-ccCCCCeEEEEeCCC----------CCCCCEEEEEEcCC
Confidence            4799999999999987543334579999999999997765 344455666654322          12234556666555


Q ss_pred             H--HHHHHHHHHHH
Q 009741          271 N--HALRQLQRTAK  282 (527)
Q Consensus       271 ~--~~~~~l~~~~~  282 (527)
                      +  +-+..+++.+.
T Consensus       112 g~~~F~~~~~~~~~  125 (130)
T d2caya1         112 DGVLFSQATERALE  125 (130)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            4  33456666554

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=93.32  E-value=0.58  Score=38.93  Aligned_cols=148  Identities=8%  Similarity=-0.004  Sum_probs=89.6

Q ss_pred             eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEc
Q 009741          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  419 (527)
Q Consensus       340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  419 (527)
                      .+.+.++|+++||.+++.|...++.+....-+..++..+     +...+..|.++|..-     ||   ....+|++...
T Consensus         7 ~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eG-----dG~~GsIr~~~~~~g-----~~---~~~~Kerie~v   73 (157)
T d1xdfa1           7 DESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEG-----NGGPGTIKKLTLIEG-----GE---TKYVLHKIEAV   73 (157)
T ss_dssp             EEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEES-----SSSTTCEEEEEEEET-----TE---EEEEEEEEEEE
T ss_pred             EEEeccCCHHHHHHHHhhchhhccccchhheecceeecC-----CCCCCcEEEEEEcCC-----Cc---cEEEEEEEEEE
Confidence            356778899999999987655556654433333333333     222478899998653     33   23467888753


Q ss_pred             CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHHH
Q 009741          420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  499 (527)
Q Consensus       420 ~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  499 (527)
                      ++. ...+..+..--|+....+-++.....+.+.++++|.++..     ++|.+-.  ...+.-.-.+..++.+..+++.
T Consensus        74 D~e-~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t-----~eYe~~~--~~~~~~e~ik~~~e~~~~~~K~  145 (157)
T d1xdfa1          74 DEA-NLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVT-----IKIETKG--DAQPNEEEGKAAKARGDAFFKA  145 (157)
T ss_dssp             EGG-GTEEEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEE-----EEEEESS--SSCCCHHHHHHHHHHHHTTTHH
T ss_pred             ech-hcEEEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHHHHH
Confidence            322 2234344443444444566778888888888889988877     4455422  1112222233456667778899


Q ss_pred             HHHHHhhcC
Q 009741          500 ARSYIKICT  508 (527)
Q Consensus       500 ~~~~l~~~~  508 (527)
                      ++.+|-.|.
T Consensus       146 iEaYLlanp  154 (157)
T d1xdfa1         146 IENYLSAHP  154 (157)
T ss_dssp             HHHHHHTSG
T ss_pred             HHHHHhhCC
Confidence            999987765

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=93.05  E-value=1.4  Score=36.59  Aligned_cols=149  Identities=12%  Similarity=0.131  Sum_probs=88.2

Q ss_pred             eeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEc
Q 009741          341 NDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  419 (527)
Q Consensus       341 ~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  419 (527)
                      +...++|++.||+++..|...++.+.. ..-+.-++.-++|.     .+..|.++|..     -||. .  ..+|++...
T Consensus         8 E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~-----~GsIr~~~~~~-----~~~~-~--~~Kerve~i   74 (159)
T d1fm4a_           8 EATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGG-----PGTIKKINFPE-----GFPF-K--YVKDRVDEV   74 (159)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSS-----TTCEEEEECCT-----TSSS-S--EEEEEEEEE
T ss_pred             EeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCC-----CCCEEEEEecC-----CCCc-e--EEEEEEEEE
Confidence            456788999999999875444555543 33444455555553     25678887632     2332 2  345666643


Q ss_pred             C-CCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHH
Q 009741          420 P-DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLE  498 (527)
Q Consensus       420 ~-~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~  498 (527)
                      + ++..|.  .+..--|+....+=+......+.+.++++|.++..     ++|.+-.  -..+.--.....++.+..+++
T Consensus        75 D~~~~~~~--y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt-----~eYe~~~--~~~~~~e~~k~~ke~~~~~~K  145 (159)
T d1fm4a_          75 DHTNFKYN--YSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKIS-----NKYHTKG--NHEVKAEQVKASKEMGETLLR  145 (159)
T ss_dssp             ETTTTEEE--EEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEE-----EEEEEST--TCCCCTTTTHHHHHHHHHHHH
T ss_pred             cccccEEE--EEEEeccccccceEEEEEEEEEecCCCCceEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHHHH
Confidence            3 333333  33332444334444556666777777888987777     3343311  112223344567788889999


Q ss_pred             HHHHHHhhcCCCC
Q 009741          499 TARSYIKICTSGG  511 (527)
Q Consensus       499 ~~~~~l~~~~~~~  511 (527)
                      .++.+|-+|....
T Consensus       146 ~iE~YLlanp~~y  158 (159)
T d1fm4a_         146 AVESYLLAHSDAY  158 (159)
T ss_dssp             HHHHHHHHCTTTT
T ss_pred             HHHHHHhhChhhc
Confidence            9999999987754

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=91.96  E-value=1.6  Score=36.01  Aligned_cols=146  Identities=14%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHH-HcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRA-ARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~-~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (527)
                      ..+.+.++|+++||.+|..|...++.+.+- .-+.-+  +..|.    ..+..|.++|..     .||. .  ..+++++
T Consensus         6 e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve--veGdG----~~GsIr~~~~~~-----~~~~-~--~~Kerve   71 (153)
T d2bk0a1           6 VLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE--IKGDG----GPGTLKIITLPD-----GGPI-T--TMTLRID   71 (153)
T ss_dssp             EEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE--EESSS----STTCEEEEECCT-----TSSC-C--EEEEEEE
T ss_pred             EEEEeccCCHHHHHHHHhhcccccccccccceeeEEE--EECCC----CCCeEEEEEEec-----Cccc-e--eeEEEEE
Confidence            456788899999999987754455666553 343333  33332    236789888732     2442 1  3457776


Q ss_pred             E-cCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHH
Q 009741          418 L-SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  496 (527)
Q Consensus       418 ~-~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~  496 (527)
                      . ..++..|  ..+..--|+....+=++...+.+.+.++++|.++.+     ++|.+-.  -....---....++.+..+
T Consensus        72 ~iD~~~~~~--~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t-----~eYe~~~--~~~~~~e~~k~~~e~~~~~  142 (153)
T d2bk0a1          72 GVNKEALTF--DYSVIDGDILLGFIESIENHVVLVPTADGGSICKTT-----AIFHTKG--DAVVPEENIKYANEQNTAL  142 (153)
T ss_dssp             EEETTTTEE--EEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEE-----EEEEEST--TCCCCHHHHHHHHHHHHHH
T ss_pred             EEecCccEE--EEEEEecccccccEEEEEEEEEEecCCCCCeEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHH
Confidence            4 3333333  333333444445555777888888888888987776     4454421  1122223344566777888


Q ss_pred             HHHHHHHHhhc
Q 009741          497 LETARSYIKIC  507 (527)
Q Consensus       497 ~~~~~~~l~~~  507 (527)
                      ++.++++|-+|
T Consensus       143 ~K~iE~YLlan  153 (153)
T d2bk0a1         143 FKALEAYLIAN  153 (153)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            88888887543

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=91.93  E-value=1.6  Score=36.00  Aligned_cols=148  Identities=8%  Similarity=0.003  Sum_probs=89.6

Q ss_pred             eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEc
Q 009741          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  419 (527)
Q Consensus       340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  419 (527)
                      .+.+.++|+++||++++.|...++.++...-+..++..+     +...+..|.++|..-     || .  -..++++...
T Consensus         7 ~E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eG-----dGg~GsIk~~~~~~~-----~~-~--~~~Kerie~i   73 (155)
T d1icxa_           7 NEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEG-----NGGPGTIKKIIAIHD-----GH-T--SFVLHKLDAI   73 (155)
T ss_dssp             EEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEES-----SSSTTCEEEEEEESS-----SS-E--EEEEEEEEEE
T ss_pred             EeEEecCCHHHHhhhheeccchhchhhhhheeeeeEecC-----CCccceEEEEEeccC-----Cc-e--EEEEEEEEEE
Confidence            345788999999999988655566665533333333333     222467898887652     33 1  1346777643


Q ss_pred             CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHHH
Q 009741          420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  499 (527)
Q Consensus       420 ~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  499 (527)
                      ++ ....+.-+..--|+-...+-++.....+.+.++++|.++..     ++|.+-.   ..+.....+..++.+..+++.
T Consensus        74 D~-en~~~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t-----~eYe~~g---~~~~e~~~~~~ke~~~~~fK~  144 (155)
T d1icxa_          74 DE-ANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKIN-----VKFHTKG---DVLSETVRDQAKFKGLGLFKA  144 (155)
T ss_dssp             EG-GGTEEEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEE-----EEEEESS---SSCCHHHHTTHHHHHHHHHHH
T ss_pred             cc-cccEEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEE-----EEEEECC---CCCChhhHHHHHHHHHHHHHH
Confidence            22 12233344444455444555666677777777778887666     4454421   123444455577888899999


Q ss_pred             HHHHHhhcCC
Q 009741          500 ARSYIKICTS  509 (527)
Q Consensus       500 ~~~~l~~~~~  509 (527)
                      ++.+|-+|.+
T Consensus       145 iE~YLlanPd  154 (155)
T d1icxa_         145 IEGYVLAHPD  154 (155)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHhhCcC
Confidence            9999988764

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=90.20  E-value=2.8  Score=34.12  Aligned_cols=108  Identities=8%  Similarity=-0.007  Sum_probs=64.8

Q ss_pred             eeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEcC
Q 009741          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP  420 (527)
Q Consensus       341 ~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~  420 (527)
                      +.+.++|+.+||.+++.|...+....-..-...++.-++|.     .+..|.++|..-     ||   .-...|++...+
T Consensus         8 E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~-----~GsIr~~~~~~g-----~~---~~~~kErl~~iD   74 (147)
T d1txca1           8 ETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGG-----VGTIKKITANEG-----DK---TSFVLQKVDAID   74 (147)
T ss_dssp             EEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSS-----TTCEEEEEEEET-----TE---EEEEEEEEEEEE
T ss_pred             EEeccCCHHHHHHhhhcccccCccccccccccceeecCCCC-----cceEEEEEEcCC-----Cc---ceEEEEEEEEEc
Confidence            45677899999999988644443332222333344444432     367898888752     32   123456676433


Q ss_pred             -CCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEE
Q 009741          421 -DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK  463 (527)
Q Consensus       421 -~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~  463 (527)
                       ++..|  ..+..--|++...+-+......+.+.++++|.++..
T Consensus        75 ~~~~~~--~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~  116 (147)
T d1txca1          75 EANLGY--DYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVT  116 (147)
T ss_dssp             GGGTEE--EEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEE
T ss_pred             cCCcEE--EEEEEccCccccceEEEEEEEEEecCCCCCcEEEEE
Confidence             33333  334444577777777777777888888888876555

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=1.8  Score=34.41  Aligned_cols=42  Identities=12%  Similarity=0.141  Sum_probs=34.5

Q ss_pred             cceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccc
Q 009741          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI  233 (527)
Q Consensus       191 ~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~  233 (527)
                      -.|++|+|.+.++|-..... ...+.+||..|.+++.....+-
T Consensus        34 ~~G~l~LTthRli~~~~~~~-~~s~~lpl~~i~~~e~~~~~fg   75 (129)
T d2hthb1          34 DAGTLLLSTHRLIWRDQKNH-ECCMAILLSQIVFIEEQAAGIG   75 (129)
T ss_dssp             CCEEEEEESSEEEEEETTCC-SCCEEEEGGGEEEEEEECCTTS
T ss_pred             cceEEEEEeceEEEecCCCC-ceEEEEEhHHceeeeEEccccc
Confidence            36999999999999866544 4688999999999998876543

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=1.9  Score=33.09  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=51.3

Q ss_pred             cceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeech
Q 009741          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR  270 (527)
Q Consensus       191 ~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r  270 (527)
                      ..|.||++..+|-|-.+- +....+.+++.+|...+..+...=-..+.|..+.+             ....|.|++--.+
T Consensus        20 ~~GtL~l~~d~l~W~p~~-~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~-------------~s~~F~Ftn~~~~   85 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG-------------DTTNFHFSNESTA   85 (108)
T ss_dssp             CEEEEEECSSEEEEEESS-CSSCSEEEETTTEEEEEECCTTCSSEEEEEEETTS-------------CEEEEEECCTTTH
T ss_pred             CCcEEEEEcCeEEEEcCC-CCCceEEEEhhhhhceecCCCCcccceeEEEEeCC-------------CeEEEEECChHHH
Confidence            369999999999999976 44556999999999988877442112567776532             2356667665444


Q ss_pred             ----HHHHHHHHHHHH
Q 009741          271 ----NHALRQLQRTAK  282 (527)
Q Consensus       271 ----~~~~~~l~~~~~  282 (527)
                          |..=++|..++.
T Consensus        86 ~~~Rd~iK~~Lq~~i~  101 (108)
T d2rnrb1          86 VKERDAVKDLLQQLLP  101 (108)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence                333344444443

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=88.62  E-value=4.6  Score=31.78  Aligned_cols=136  Identities=9%  Similarity=0.003  Sum_probs=75.6

Q ss_pred             eeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceec----CCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEE
Q 009741          342 DVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAA----DEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (527)
Q Consensus       342 ~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~----~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (527)
                      -++++|++++|.++-+  -.-+.++.           ||...    ++ +      +|..-+...+||-.......-.+.
T Consensus         7 ~~i~~~~e~v~~~l~D--~~~~~~~~-----------Pg~~~~~~~~~-~------~~~~~~~~~~g~~~~~~~~~~~~~   66 (147)
T d2pcsa1           7 IELKGTVEEVWSKLMD--PSILSKCI-----------MGCKSLELIGE-D------KYKADLQIGIAAVKGKYDAIIEVT   66 (147)
T ss_dssp             EEEESCHHHHHHHHTC--HHHHHHHS-----------TTEEEEEEEET-T------EEEEEEEECCGGGCEEEEEEEEEE
T ss_pred             EEeCCCHHHHHHHHcC--HHHHHhhC-----------cchhhceecCC-C------EEEEEEEEeecceeeeeEEEEEEe
Confidence            4789999999999943  22233222           33321    11 1      233222233676554444333333


Q ss_pred             EcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHH
Q 009741          418 LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELML  497 (527)
Q Consensus       418 ~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~  497 (527)
                      .......+.+......    .+..+.....|.+...++++|+|.++   +.+++..  ++..+..+-...-..+.++.++
T Consensus        67 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~T~v~~~---~~~~~~g--~l~~l~~~li~~~~~~~~~~f~  137 (147)
T d2pcsa1          67 DIKPPYHYKLLVNGEG----GPGFVNAEGVIDLTPINDECTQLTYT---YSAEVGG--KVAAIGQRMLGGVAKLLISDFF  137 (147)
T ss_dssp             EEETTTEEEEEEEEEE----TTEEEEEEEEEEEEESSSSEEEEEEE---EEEEEES--GGGGGCHHHHHHHHHHHHHHHH
T ss_pred             ccCcccceeEeecccc----ccchhcceeEEeeecccCCcEEEEEE---EEEEECc--HHHHHHHHHHHHHHHHHHHHHH
Confidence            3222334444333322    35677788888888888999999999   9999855  2333433322223344556666


Q ss_pred             HHHHHHHhh
Q 009741          498 ETARSYIKI  506 (527)
Q Consensus       498 ~~~~~~l~~  506 (527)
                      +.+++.+.+
T Consensus       138 ~~~~~~l~~  146 (147)
T d2pcsa1         138 KKIQKEIAK  146 (147)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            666666553

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=2.5  Score=36.25  Aligned_cols=150  Identities=10%  Similarity=0.064  Sum_probs=74.7

Q ss_pred             eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCccee-EeEEEEEE
Q 009741          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTA-MTESQHAV  417 (527)
Q Consensus       339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~-~~~~Q~~~  417 (527)
                      -++.+++++++.+|..++.| ..       .+..+|-.+..+..-+..+.... +.|..-.....+|-+.+ +...+.+.
T Consensus        55 k~~~~i~~~~~~v~~~~~~d-~e-------~~~~Wd~~~~~~~ile~~~~~~~-i~~~~~~~~~~~~vs~RD~v~~~~~~  125 (214)
T d1em2a_          55 ILKTFLPCPAELVYQEVILQ-PE-------RMVLWNKTVTACQILQRVEDNTL-ISYDVSAGAAGGVVSPRDFVNVRRIE  125 (214)
T ss_dssp             EEEEEESSCHHHHHHHTTTC-HH-------HHTTTCTTEEEEEEEEEETTTEE-EEEEEECCBTTTTBCCEEEEEEEEEE
T ss_pred             EEEEEEeCCHHHHHHHHHhC-hH-------HHHHHHHHHhheEEEEEcCCCce-EEEEEecccCCCCCCCcEEEEEEEEE
Confidence            45679999999999877653 21       22333323333333221111222 33332211122333333 23344444


Q ss_pred             EcCCCCeEEEEEeeeeCCCCCC-CeEEEE---EEEEEEeecC--CceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHH
Q 009741          418 LSPDKKIFVFETVQQAHDVPFG-SYFEIH---GRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK  491 (527)
Q Consensus       418 ~~~~~~~~vi~~~~~~~dvPyg-d~F~v~---~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~  491 (527)
                      ..+ +.++++......++.|-. ++=+++   ..|+|++.+.  ++|++...   +.++..++ +-+.++.......+.+
T Consensus       126 ~~~-~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~---~~~Dp~G~-iP~~lvn~~~~~~~~~  200 (214)
T d1em2a_         126 RRR-DRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWI---LNTDLKGR-LPRYLIHQSLAATMFE  200 (214)
T ss_dssp             ECS-SEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEE---ECEECCSS-SCHHHHHHHHHHHHHH
T ss_pred             EcC-CcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEE---EEeCCCCC-CCHHHHHHHHHHhHHH
Confidence            443 335555555555555544 443333   7899999764  58999888   88877654 2244444433334444


Q ss_pred             HHHHHHHHHHHHHhh
Q 009741          492 EVELMLETARSYIKI  506 (527)
Q Consensus       492 ~~~~~~~~~~~~l~~  506 (527)
                          +++.+++.+++
T Consensus       201 ----~~~~Lrk~~~k  211 (214)
T d1em2a_         201 ----FAFHLRQRISE  211 (214)
T ss_dssp             ----HHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHH
Confidence                44444444443