Citrus Sinensis ID: 009748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGGHHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACLQKGKRPSNRPQSSPDACF
cccccccHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEccccEEEEEEEEEEccccccEEEEEEcEEEEcccccccccccccccEEEEEEEcEEEEEcEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccEEEEcEEEEcccccEEEEEEEEcEEEEEEEEEccccccccccccccccccEEEEccEEEccccEEEEccccEEEEEEEEEEcccccEEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEccccccEEEEcccccccccccccccEEEEcEEEEEEEEEcccccEEEEEcccccEEcEEEEEEEEEEccccccccccEEEEEEEEEccccccccccccccccccccccccccccc
cccccHHHHHHHHHHHHHHHHccccHHHccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHcccccccccccHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEEcEEEEEEcEEEcccccHHccccccccccccccEEEEccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccEEEEEEcccccccEEEEEEEEEEEEEcccEEEEEEccccccccccccccEEEEEEEEEEEEccccccccEEEEcccccccccEEEEEEEEEEcccccccccccHHccccccccccccccHHHcccccccccccccccccc
MRGLSFRSLAFLFLIAFLVWSASFETcnarrgrhwrhgrssnsvslskknnkgnthrkgghhnyhngkpkpkpkpkpkapshnkspplapavptkpvydvpppshhssvfnvkdfgakgngvsddTKAFEAAWAAACKVEASImvvpaesvflvgpmsfsgpycqaniifqldgtiiaptgskdwgkglLWWLDFTklkgitiqgkgiidgrgsvwwqdypyddpiddeskliiplhnntlpykpptpirselsgkmpsikptalrfygsfnvtvtgitiqnspqchlkfdncigVVVHdvsvsspgdspntdgihlqnskdvlihtsnlacgddcvsiqtgcsnvyvhnvncgpghgisigslgkdntkacvSNITVRDVMMHNTMNGVRiktwqggsgsvqgVLFSNIQVSEVQLPIVIDqfycdkstcknqtsavALSGITyervkgtytvkpvhfacsdslpcvdvTLSVielkpvqeryhmydpycwqafgesttpthppiaclqkgkrpsnrpqsspdacf
MRGLSFRSLAFLFLIAFLVWSASFETCNARrgrhwrhgrssnsvslskknnkgnthrkgghhnyhngkpkpkPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIqgkgiidgrgsvWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGisigslgkdnTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIAClqkgkrpsnrpqsspdacf
MRGLSFRSLAFLFLIAFLVWSASFETCNArrgrhwrhgrssnsvslskknnkGNTHRKGGHHNYHNGkpkpkpkpkpkapshnksppLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTkafeaawaaackveaSIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACLQKGKRPSNRPQSSPDACF
*****FRSLAFLFLIAFLVWSASFETCNARRGRHW**************************************************************************FNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLP******************KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV***********IHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGES*****************************
****SFRSLAFLFLIAFLVWSASFETCN******************************************************************************SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKST**N*TSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPI******************ACF
MRGLSFRSLAFLFLIAFLVWSASFETCNARR*******************************************************PLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACL******************
***LSFRSLAFLFLIAFLVWSASFETCNARRG***************************************************************************SVF**KDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACLQKG***************
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGGHHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACLQKGKRPSNRPQSSPDACF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query527 2.2.26 [Sep-21-2011]
Q949Z1475 Polygalacturonase At1g481 no no 0.732 0.812 0.465 1e-103
P43212514 Polygalacturonase OS=Cryp N/A no 0.650 0.667 0.402 1e-76
Q94AJ5444 Probable polygalacturonas no no 0.721 0.855 0.384 2e-76
P35336467 Polygalacturonase OS=Acti N/A no 0.647 0.730 0.406 1e-74
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.652 0.669 0.398 5e-74
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.715 0.743 0.376 3e-71
P48978460 Polygalacturonase OS=Malu N/A no 0.660 0.756 0.379 9e-70
O23147431 Polygalacturonase ADPG1 O no no 0.648 0.793 0.379 7e-69
Q02096462 Polygalacturonase OS=Pers N/A no 0.652 0.744 0.382 4e-68
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.635 0.763 0.383 9e-68
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 Back     alignment and function desciption
 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/417 (46%), Positives = 265/417 (63%), Gaps = 31/417 (7%)

Query: 101 PPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFS 160
           P  S    VF+V  FGA G+G  DDT AF+ AW AAC VE+ +++ P   VF +    FS
Sbjct: 71  PGDSDSGCVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTIFS 130

Query: 161 GPYCQANIIFQLDGTIIAPTGSKDWGK--GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQ 218
           GP C+  ++FQLDG ++ P G ++W +      WL F +L G T  GKG ++G G  WW 
Sbjct: 131 GP-CKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWD 189

Query: 219 DYPYDDPIDDESKLIIPLHNNTLPYKP-PTPIRSELSGKMPSIKPTALRFYGSFNVTVTG 277
                                 LP KP   P  S  SG  P   PT +RF+ S N+ V G
Sbjct: 190 ----------------------LPCKPHRGPDGSSSSG--PCASPTMIRFFMSNNIEVKG 225

Query: 278 ITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV 337
           + IQNSPQ H+KFD C GV+++++ +SSP  SPNTDGIHL N++ V I+ S ++ GDDC+
Sbjct: 226 LRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCI 285

Query: 338 SIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQG 397
           SI TGCS+V +  V CGP HGISIGSLG  N++ACVSNITVR+ ++ ++ NG+R+KTWQG
Sbjct: 286 SIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQG 345

Query: 398 GSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVK-- 455
           G+GSV  +LF NIQ+  V   I++DQ+YC    C+N+TSAV +  + Y  +KGTY V+  
Sbjct: 346 GTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVRSP 405

Query: 456 PVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACLQKG 512
           P+HFACSD++ C ++T+S +EL P +E   + DP+CW A+G+  T T PPI CL  G
Sbjct: 406 PIHFACSDTVACTNITMSEVELLP-EEGELVDDPFCWNAYGKQETLTIPPIDCLLDG 461
Polygalacturonase not involved in the final stages of pod shatter.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
118488018516 unknown [Populus trichocarpa] 0.969 0.990 0.746 0.0
224100173517 predicted protein [Populus trichocarpa] 0.975 0.994 0.750 0.0
225425577505 PREDICTED: polygalacturonase At1g48100 [ 0.958 1.0 0.730 0.0
255568780519 polygalacturonase, putative [Ricinus com 0.977 0.992 0.749 0.0
356567642538 PREDICTED: polygalacturonase At1g48100-l 0.988 0.968 0.692 0.0
357485855543 Polygalacturonase [Medicago truncatula] 0.988 0.959 0.687 0.0
356526789538 PREDICTED: polygalacturonase At1g48100 i 0.990 0.970 0.691 0.0
307135969530 polygalacturonase [Cucumis melo subsp. m 0.988 0.983 0.706 0.0
449450460505 PREDICTED: polygalacturonase At1g48100-l 0.956 0.998 0.719 0.0
449434933530 PREDICTED: polygalacturonase At1g48100-l 0.988 0.983 0.700 0.0
>gi|118488018|gb|ABK95830.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/528 (74%), Positives = 436/528 (82%), Gaps = 17/528 (3%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKN--NKGNTHRK 58
           M GLSFR L F+  IAFLVWS+SF TC ARRG+HWR  R  NS SL+KK   N+GN+ +K
Sbjct: 4   MSGLSFRCLTFMLFIAFLVWSSSFHTCIARRGKHWRESRG-NSASLAKKKGKNQGNSRQK 62

Query: 59  GGHHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAK 118
                +HNG  KPKP P                          PP   S+ FNV DFGAK
Sbjct: 63  -----HHNGVSKPKPPPPKAPSLPPPP--------KDDAPAPSPPQKSSTTFNVLDFGAK 109

Query: 119 GNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIA 178
           GNG SDDTKAF+AAWA ACKV AS M+VPAE VFLVGP+SFSGPYCQANI+FQLDGTIIA
Sbjct: 110 GNGKSDDTKAFQAAWAEACKVAASTMIVPAEYVFLVGPISFSGPYCQANIVFQLDGTIIA 169

Query: 179 PTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHN 238
           PT S  WG+GL  WL+FTKL GITIQG+G IDG GSVWWQDYP++DPID+ES+ I+PL N
Sbjct: 170 PTNSNVWGRGLFQWLEFTKLVGITIQGEGTIDGSGSVWWQDYPFEDPIDNESEFIVPL-N 228

Query: 239 NTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVV 298
           NT    PP PIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVV
Sbjct: 229 NTAQQHPPMPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVV 288

Query: 299 HDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHG 358
           HD+  SSPGDSPNTDGIHLQNSKDVLIH+++LACGDDCVSIQTGCSNVY+HNVNCGPGHG
Sbjct: 289 HDMRTSSPGDSPNTDGIHLQNSKDVLIHSTDLACGDDCVSIQTGCSNVYIHNVNCGPGHG 348

Query: 359 ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLP 418
           ISIG LGKDNTKACVSNITVRDV++H TM GVRIKTWQGGSGSVQGVLFSNIQVSEVQLP
Sbjct: 349 ISIGGLGKDNTKACVSNITVRDVVLHGTMTGVRIKTWQGGSGSVQGVLFSNIQVSEVQLP 408

Query: 419 IVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELK 478
           IVIDQFYCDKS CKNQTSAVALSGITYE+++GTYTVKPVHFACSD+LPC+DV+L+ IEL+
Sbjct: 409 IVIDQFYCDKSICKNQTSAVALSGITYEKIRGTYTVKPVHFACSDALPCMDVSLTTIELQ 468

Query: 479 PVQERYHMYDPYCWQAFGESTTPTHPPIACLQKGKRPSNRPQSSPDAC 526
           P++E+YH+YDP+CWQ FGE  TPT PPI+CLQ GK  SNRPQS  D C
Sbjct: 469 PLKEQYHLYDPFCWQTFGELNTPTKPPISCLQIGKPSSNRPQSDHDTC 516

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224100173|ref|XP_002311773.1| predicted protein [Populus trichocarpa] gi|222851593|gb|EEE89140.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225425577|ref|XP_002266600.1| PREDICTED: polygalacturonase At1g48100 [Vitis vinifera] gi|297739064|emb|CBI28553.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568780|ref|XP_002525361.1| polygalacturonase, putative [Ricinus communis] gi|223535324|gb|EEF36999.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356567642|ref|XP_003552026.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|357485855|ref|XP_003613215.1| Polygalacturonase [Medicago truncatula] gi|355514550|gb|AES96173.1| Polygalacturonase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356526789|ref|XP_003531999.1| PREDICTED: polygalacturonase At1g48100 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|307135969|gb|ADN33828.1| polygalacturonase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449450460|ref|XP_004142980.1| PREDICTED: polygalacturonase At1g48100-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434933|ref|XP_004135250.1| PREDICTED: polygalacturonase At1g48100-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
TAIR|locus:2019963532 AT1G10640 [Arabidopsis thalian 0.986 0.977 0.634 1.4e-183
TAIR|locus:2036581540 AT1G60590 [Arabidopsis thalian 0.990 0.966 0.614 3.9e-179
TAIR|locus:2222657435 AT5G14650 [Arabidopsis thalian 0.523 0.634 0.678 5.6e-139
TAIR|locus:2028844460 AT1G23460 [Arabidopsis thalian 0.464 0.532 0.476 8.3e-83
TAIR|locus:2088842470 AT3G26610 [Arabidopsis thalian 0.483 0.542 0.572 3.2e-81
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.464 0.523 0.476 8.3e-81
TAIR|locus:2023817475 AT1G48100 [Arabidopsis thalian 0.510 0.566 0.52 6.3e-76
TAIR|locus:2196055491 AT1G02460 [Arabidopsis thalian 0.538 0.578 0.501 4.6e-73
TAIR|locus:2141345468 AT4G01890 [Arabidopsis thalian 0.518 0.583 0.501 2.1e-70
TAIR|locus:2027534434 AT1G56710 [Arabidopsis thalian 0.504 0.612 0.498 5.5e-70
TAIR|locus:2019963 AT1G10640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1781 (632.0 bits), Expect = 1.4e-183, P = 1.4e-183
 Identities = 338/533 (63%), Positives = 387/533 (72%)

Query:     2 RGLSFRSLAFLFLIAFLVWSASFETCNAXXXXXXXXXXXXXXXXXXXXX-----XXGNTH 56
             R LS RS+  + L+A LVWS + ETC A                            GN+H
Sbjct:     5 RSLSLRSITMMILMAVLVWSVTLETCIARRGRHWRHSHRSSSDLSDSLSNKKPKSHGNSH 64

Query:    57 RKGGHHNYHNGXXXXXXXXXXXXXXXXXXXXLAPAVPTKPVYDVPP--PSHHSSVFNVKD 114
                 H+N H+                      +P V   P    PP  P   S VFNV D
Sbjct:    65 HHSSHNNNHHHKSKPKPKPKLKTPPKAHDNN-SPVVSGPPKVQPPPLPPQKGSQVFNVMD 123

Query:   115 FGAKGNGVSDDTXXXXXXXXXXXXXXXSIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174
             FGAKG+G  DDT               S+M+VP E  +LVGP+SFSGPYCQANI+FQLDG
Sbjct:   124 FGAKGDGKCDDTKAFEAAWVAACKIEASVMLVPPEYTYLVGPISFSGPYCQANIVFQLDG 183

Query:   175 TIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQ-DYPYDDPIDDESKLI 233
             TIIAPT SK WGKGL+WW+DFTKLKGI +QGKG+IDGRGS WWQ D P+   ID ++KLI
Sbjct:   184 TIIAPTDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPF---IDSDTKLI 240

Query:   234 IPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNC 293
             +PL NN+    PP PIRSEL  +MPSIKPTALRF GSF V VTGITIQNSPQCHLKFD+C
Sbjct:   241 VPL-NNSANQNPPMPIRSELDERMPSIKPTALRFSGSFGVEVTGITIQNSPQCHLKFDDC 299

Query:   294 IGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNC 353
             +GVVVHD++VSSPGDSPNTDGIHLQN+KDVLIH++ LACGDDC+SIQTGCSNV+VHNVNC
Sbjct:   300 VGVVVHDIAVSSPGDSPNTDGIHLQNTKDVLIHSTTLACGDDCISIQTGCSNVFVHNVNC 359

Query:   354 GPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVS 413
             GPGHGISIGSLGK+ TKACVSNITVRDV MHNTM GVRIKTWQGG GSV+G++FSNIQ++
Sbjct:   360 GPGHGISIGSLGKEGTKACVSNITVRDVAMHNTMTGVRIKTWQGGVGSVKGIIFSNIQLN 419

Query:   414 EVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLS 473
             +VQ+PI I+QFYCD S CKNQTSAVA+ G+TYER+KGTYTVKPVHFACSD+ PCVDV LS
Sbjct:   420 QVQIPITINQFYCDHSKCKNQTSAVAVEGVTYERIKGTYTVKPVHFACSDNFPCVDVQLS 479

Query:   474 VIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACLQKGKRPSNRPQSSPDAC 526
              IELKPVQE+Y MYD YCWQ FGE  TPT PPI CL+ GK P N+ QS  D C
Sbjct:   480 SIELKPVQEKYRMYDAYCWQTFGELNTPTLPPIDCLKIGKPPRNKVQSDHDVC 532
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2036581 AT1G60590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088842 AT3G26610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2023817 AT1G48100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141345 AT4G01890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-105
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 2e-88
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-84
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-80
PLN03010409 PLN03010, PLN03010, polygalacturonase 4e-78
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-75
PLN02155394 PLN02155, PLN02155, polygalacturonase 2e-69
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 3e-29
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 1e-05
pfam13229157 pfam13229, Beta_helix, Right handed beta helix reg 0.003
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  322 bits (828), Expect = e-105
 Identities = 166/407 (40%), Positives = 228/407 (56%), Gaps = 41/407 (10%)

Query: 109 VFNVKDFGAKGNGVSDDTKAFEAAWAAAC--KVEASIMVVPAESVFLVGPMSFSGPYCQA 166
           V +V DFGAKG+GV+DDT+AF+ AW  AC  KV+  I V+PA   FLV P+   GP C+A
Sbjct: 52  VLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRI-VIPAGYTFLVRPIDLGGP-CKA 109

Query: 167 NIIFQLDGTIIAPTGSKDWGKGL--LWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDD 224
            +  Q+ GTIIAP     W KGL    WL F  +  +T++G G ++G G  WW       
Sbjct: 110 KLTLQISGTIIAPKDPDVW-KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWA------ 162

Query: 225 PIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP 284
                          +       P R           PTA+ F+   ++ V  + + +S 
Sbjct: 163 --------------QSCKINHTNPCRH---------APTAITFHKCKDLRVENLNVIDSQ 199

Query: 285 QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344
           Q H+ F NC  V +  + V +P  SPNTDGIH+  S+ V+I  S +  GDDC+SI    S
Sbjct: 200 QMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSS 259

Query: 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQG 404
            + + N+ CGPGHGISIGSLGK N+ + V +ITV    + NT NGVRIKTWQGGSG+   
Sbjct: 260 RIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASK 319

Query: 405 VLFSNIQVSEVQLPIVIDQFYCDKST-CKNQTSAVALSGITYERVKGTY-TVKPVHFACS 462
           + F NI +  V  PI+IDQ+YCD    C NQTSAV +  I++  +KGT  T + + FACS
Sbjct: 320 ITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACS 379

Query: 463 DSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACL 509
           DS PC  + L  ++L      +   + +CW+A+G S+   +PP  C 
Sbjct: 380 DSSPCEGLYLEDVQLLSSTGDF--TESFCWEAYGSSSGQVYPP-PCF 423

Length = 443
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information
>gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 527
PLN02793443 Probable polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02155394 polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.91
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.83
PLN02793443 Probable polygalacturonase 99.81
PLN02218431 polygalacturonase ADPG 99.79
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.79
PLN03003456 Probable polygalacturonase At3g15720 99.78
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.77
PLN02155394 polygalacturonase 99.76
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.74
PLN03010409 polygalacturonase 99.74
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.51
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.15
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.66
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.49
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.37
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.32
smart00656190 Amb_all Amb_all domain. 98.21
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.18
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.16
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.14
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.14
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.13
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.11
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.06
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.86
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 97.84
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 97.81
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.78
PLN02634359 probable pectinesterase 97.75
PLN02304379 probable pectinesterase 97.63
smart00656190 Amb_all Amb_all domain. 97.62
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.53
PRK10531422 acyl-CoA thioesterase; Provisional 97.5
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.4
PLN02773317 pectinesterase 97.36
PLN02480343 Probable pectinesterase 97.28
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.98
PLN02665366 pectinesterase family protein 96.93
PLN02432293 putative pectinesterase 96.88
PLN02682369 pectinesterase family protein 96.86
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.79
PLN02916502 pectinesterase family protein 96.76
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.75
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.7
PLN02176340 putative pectinesterase 96.69
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 96.69
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.67
PLN02506537 putative pectinesterase/pectinesterase inhibitor 96.64
PLN02497331 probable pectinesterase 96.55
PLN02301548 pectinesterase/pectinesterase inhibitor 96.48
PLN02671359 pectinesterase 96.45
PLN02201520 probable pectinesterase/pectinesterase inhibitor 96.39
PLN02314586 pectinesterase 96.36
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 96.33
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.33
PLN02217670 probable pectinesterase/pectinesterase inhibitor 96.32
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.29
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.28
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.27
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.27
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.2
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.16
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.07
PF1221867 End_N_terminal: N terminal extension of bacterioph 95.97
PLN02197588 pectinesterase 95.88
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.85
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 93.22
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 93.09
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 92.79
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 92.59
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 89.77
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 89.37
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 89.05
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 86.69
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 83.98
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-78  Score=643.83  Aligned_cols=383  Identities=42%  Similarity=0.784  Sum_probs=342.8

Q ss_pred             CCcceeeecccccCCCCCcchHHHHHHHHhccc-ceeeeEEecCceeEEEeeeccccccccceEEEEecceEEccCCCcc
Q 009748          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD  184 (527)
Q Consensus       106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~-~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~Gtl~~~~~~~~  184 (527)
                      ..++|||+||||+|||.+|||+|||+||++||. .||++|+||+|.+|++++|.|+|| |+++++|+++|+|+++.+..+
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gp-cks~vtL~l~g~l~~~~d~~~  127 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGP-CKAKLTLQISGTIIAPKDPDV  127 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCc-cCCCeEEEEEEEEEccCChHH
Confidence            348999999999999999999999999996665 578999999997799999999998 899999999999999999999


Q ss_pred             ccc-ceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcc
Q 009748          185 WGK-GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT  263 (527)
Q Consensus       185 ~~~-~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~  263 (527)
                      |+. ....||.+.+++||+|+|.|+|||+|+.||........                             ......||+
T Consensus       128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~-----------------------------~~~~~~rP~  178 (443)
T PLN02793        128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINH-----------------------------TNPCRHAPT  178 (443)
T ss_pred             ccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccC-----------------------------CCCccCCce
Confidence            974 34679999999999999999999999999975110000                             011124899


Q ss_pred             eEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCC
Q 009748          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC  343 (527)
Q Consensus       264 ~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs  343 (527)
                      +|+|.+|+|++|+|++++|+|+|++++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||++++++
T Consensus       179 ~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s  258 (443)
T PLN02793        179 AITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNS  258 (443)
T ss_pred             EEEEEeeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCc
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             ceeEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEEee
Q 009748          344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQ  423 (527)
Q Consensus       344 ~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I~~  423 (527)
                      +||+|+||.|.++|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||+|+++.+||.|++
T Consensus       259 ~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q  338 (443)
T PLN02793        259 SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQ  338 (443)
T ss_pred             CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEe
Confidence            99999999999999999999998877788999999999999999999999999999999999999999999999999999


Q ss_pred             eeec-CCccccccceEEeeceeeeEeeeeEEe-eeeeeeecCCCceeeeeeeeEeecchhhhhcccCchhhhhcccCCCC
Q 009748          424 FYCD-KSTCKNQTSAVALSGITYERVKGTYTV-KPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTP  501 (527)
Q Consensus       424 ~y~~-~~~~~~~~~~~~i~nItf~NI~gt~~~-~pi~i~c~~~~~~~~I~f~nV~v~~~~~~~~~~~~~c~~v~g~~~~~  501 (527)
                      +|++ ...|.+.++++.|+||+|+||+++... .++.|.|++..||+||+|+||+|....+.  ...++|||++|...+.
T Consensus       339 ~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~--~~~~~C~n~~g~~~~~  416 (443)
T PLN02793        339 YYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD--FTESFCWEAYGSSSGQ  416 (443)
T ss_pred             eecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC--CCCcEEEccEEeECCe
Confidence            9987 446877788899999999999999753 57999999999999999999999877543  3357899999999877


Q ss_pred             CCCCcchhccCCCCCCC-CCC
Q 009748          502 THPPIACLQKGKRPSNR-PQS  521 (527)
Q Consensus       502 ~~~p~~c~~~~~~~~~~-~~~  521 (527)
                      ..|| +||+.+.|...+ +||
T Consensus       417 ~~p~-~C~~~~~~~~~~~~~~  436 (443)
T PLN02793        417 VYPP-PCFSDSTSFIKQKVQS  436 (443)
T ss_pred             EcCC-ccccCCCcccccccCC
Confidence            6665 899998885533 444

>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-23
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 4e-19
1nhc_A336 Structural Insights Into The Processivity Of Endopo 4e-19
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-17
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 3e-16
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 3e-15
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-13
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 4e-12
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 4e-09
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 3e-06
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 137/303 (45%), Gaps = 55/303 (18%)
Query: 148 AESVFLVGPMSF-SGPYCQANIIFQLDGTIIAPTGSKDW-------------GKGLLWWL 193
           + SVFL GP+S  SG     +++     T+ A   +K +             GKG   ++
Sbjct: 48  STSVFLSGPLSLPSG----VSLLIDKGVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFI 103
Query: 194 DFTKLKGITIQGKGIIDGRGSVWWQDYP---YDDPIDDESKLIIPLHNNTLPYKPPTPIR 250
                    I G G IDG+G V  QD     ++   D + K    L  NT          
Sbjct: 104 TAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVK---KLKQNT---------- 150
Query: 251 SELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSP 310
                      P  ++   S N T+  +++ NSP  H+ F +  G      ++ +P  + 
Sbjct: 151 -----------PRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTAR 199
Query: 311 NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNC-----GPGHGISIGSLG 365
           NTDGI   +SK++ I  SN+A GDD V+I+         N++      G GHG+SIGS  
Sbjct: 200 NTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-- 257
Query: 366 KDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFY 425
                  V N+TV D+ M+ T NG+RIK+ +  +G V GV +SN+ +  V  PIVID  Y
Sbjct: 258 ---ETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY 314
Query: 426 CDK 428
             K
Sbjct: 315 EKK 317
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-126
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-119
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-117
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-112
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-110
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-106
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-99
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-98
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-96
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 1e-91
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 8e-35
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-33
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 5e-33
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 6e-24
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 2e-21
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-17
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 7e-13
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 7e-08
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 2e-05
2x3h_A542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 6e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  374 bits (962), Expect = e-126
 Identities = 91/414 (21%), Positives = 158/414 (38%), Gaps = 60/414 (14%)

Query: 101 PPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFS 160
                 +   N+  +GA  +  +D   A  +AWAA CK    ++ +P+ +  L   ++ +
Sbjct: 12  ASTKGATKTCNILSYGAVADNSTDVGPAITSAWAA-CK-SGGLVYIPSGNYALNTWVTLT 69

Query: 161 GPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDY 220
           G    +    QLDG I            ++   D T  +  +   KG + G G V+  + 
Sbjct: 70  GG---SATAIQLDGIIYRTG---TASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG 123

Query: 221 PYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITI 280
            Y                                          LR     + +V  I +
Sbjct: 124 TY--------------------------------------GARILRLTDVTHFSVHDIIL 145

Query: 281 QNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340
            ++P  H   D C    V+++++    +    DGI +  S ++ +H   +   D+CV+++
Sbjct: 146 VDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVK 203

Query: 341 TGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSG 400
           +  +N+ V ++ C    G ++GSLG D     V++I  R+V   ++     IK+  GGSG
Sbjct: 204 SPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTWSSNQMYMIKSN-GGSG 259

Query: 401 SVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGT----YTVKP 456
           +V  VL  N         + ID ++            V L+ IT +  KGT     T  P
Sbjct: 260 TVSNVLLENFIGHGNAYSLDIDGYWSS--MTAVAGDGVQLNNITVKNWKGTEANGATRPP 317

Query: 457 VHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACLQ 510
           +   CSD+ PC D+TL  I +        +Y   C  A+G              
Sbjct: 318 IRVVCSDTAPCTDLTLEDIAIWTESGSSELY--LCRSAYGSGYCLKDSSSHTSY 369
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Length = 542 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.97
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.91
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.88
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.81
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.8
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.78
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.78
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.78
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.77
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.75
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.75
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.69
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.69
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.47
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.44
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.29
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.28
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.27
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.27
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.83
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.7
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.35
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.27
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.27
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.27
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.27
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.26
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.24
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.24
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.21
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.15
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.14
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.12
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.08
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.04
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.02
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.01
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.98
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.92
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.92
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.91
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.87
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.86
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.85
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.62
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.62
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.4
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.39
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.36
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 97.31
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.26
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.99
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.89
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.19
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 94.93
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 93.89
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 93.54
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.0
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 92.0
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 91.21
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 90.63
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 90.07
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 85.73
3riq_A543 Tailspike protein; right handed beta-helix, endorh 85.13
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 84.54
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=5.2e-65  Score=544.41  Aligned_cols=355  Identities=25%  Similarity=0.371  Sum_probs=299.8

Q ss_pred             CCcceeeecccccCCCCCcchHHHHHHHHhcccceeeeEEecCceeEEEeeeccccccccceEEEEecceEEccCCCccc
Q 009748          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDW  185 (527)
Q Consensus       106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~Gtl~~~~~~~~~  185 (527)
                      ++++|||++|||+|||++|||+|||+||++|++.||++|+||+| +|++++|.|     +++++|+++|+|+++++..+|
T Consensus        24 ~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~~ggg~v~vP~G-~yl~~~l~l-----~s~v~l~l~gtL~~s~d~~~y   97 (448)
T 3jur_A           24 PDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEG-VFLTGPIHL-----KSNIELHVKGTIKFIPDPERY   97 (448)
T ss_dssp             CSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHHHTCEEEEECSS-EEEESCEEC-----CTTEEEEESSEEEECCCGGGG
T ss_pred             CCcEEEEEecccCCCCCeecHHHHHHHHHhhhhcCCeEEEECCC-cEEEeeeEe-----CCCcEEEEEEEEEecCCHHHh
Confidence            45799999999999999999999999999876678899999999 899999998     789999999999999999988


Q ss_pred             -ccc-----------eeeeEEeeeeeceEEeeceEeeCCc--eeeeecCCCCC----CCCCCc----cEeEecCCCCCCC
Q 009748          186 -GKG-----------LLWWLDFTKLKGITIQGKGIIDGRG--SVWWQDYPYDD----PIDDES----KLIIPLHNNTLPY  243 (527)
Q Consensus       186 -~~~-----------~~~~i~~~~~~nI~I~G~G~IdG~G--~~ww~~~~~~~----~~~~~~----~~~~~~~~~~~~~  243 (527)
                       +..           ..+||.+.+++||+|+|+|+|||+|  +.||......+    +.....    ..+..+.      
T Consensus        98 ~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~------  171 (448)
T 3jur_A           98 LPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMA------  171 (448)
T ss_dssp             CSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHH------
T ss_pred             CcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhh------
Confidence             321           2368999999999999999999999  89998521000    000000    0000000      


Q ss_pred             CCCCcccccccCCCCCCCcceEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccce
Q 009748          244 KPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDV  323 (527)
Q Consensus       244 ~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV  323 (527)
                      ....+...++.......||++|.|.+|+|++|+|++++|+++|++++..|+||+|+|++|.++  ++|+||||+.+|+||
T Consensus       172 ~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV  249 (448)
T 3jur_A          172 ERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM  249 (448)
T ss_dssp             HHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEE
T ss_pred             cccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCE
Confidence            000011111212334579999999999999999999999999999999999999999999986  689999999999999


Q ss_pred             EEEecccccCCceeEeccC-----------CceeEEeeecc--CCCC-cccccccCCCCccceeeceeEeeeeeecceee
Q 009748          324 LIHTSNLACGDDCVSIQTG-----------CSNVYVHNVNC--GPGH-GISIGSLGKDNTKACVSNITVRDVMMHNTMNG  389 (527)
Q Consensus       324 ~I~n~~i~~gDD~Iai~sg-----------s~NV~I~n~~~--~~g~-GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~G  389 (527)
                      +|+||+|.++||||+++++           ++||+|+||+|  ..+| ||+|||++    .+.|+||+|+||+|.++.+|
T Consensus       250 ~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~G  325 (448)
T 3jur_A          250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERA  325 (448)
T ss_dssp             EEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEE
T ss_pred             EEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccce
Confidence            9999999999999999997           89999999999  6677 89999985    46799999999999999999


Q ss_pred             eEEeeeccCcceeeeEEeeeeEeeeeeecE-EEeeeeecCCccccccceEEeeceeeeEeeeeEEeeeeeeeecCCCcee
Q 009748          390 VRIKTWQGGSGSVQGVLFSNIQVSEVQLPI-VIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCV  468 (527)
Q Consensus       390 i~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi-~I~~~y~~~~~~~~~~~~~~i~nItf~NI~gt~~~~pi~i~c~~~~~~~  468 (527)
                      ++||+|.++.|.|+||+|+||+|+++.+|+ .|+++|+..  +  ....+.|+||+|+||+++....++.|.|++..+|+
T Consensus       326 irIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~--~--~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~  401 (448)
T 3jur_A          326 LRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE--E--GEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVK  401 (448)
T ss_dssp             EEEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC--C--CSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEE
T ss_pred             EEEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC--C--CCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEe
Confidence            999999988899999999999999999998 999999764  2  23456899999999999986678999999999999


Q ss_pred             eeeeeeEeecchhh
Q 009748          469 DVTLSVIELKPVQE  482 (527)
Q Consensus       469 ~I~f~nV~v~~~~~  482 (527)
                      ||+|+||++++.+.
T Consensus       402 ~I~~~nv~i~~~~~  415 (448)
T 3jur_A          402 DILISDTIIEGAKI  415 (448)
T ss_dssp             EEEEEEEEEESCSE
T ss_pred             eEEEEEEEEEcccc
Confidence            99999999998663
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 527
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-84
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-69
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 3e-67
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-62
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-61
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 8e-61
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-59
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 6e-59
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  265 bits (679), Expect = 2e-84
 Identities = 93/414 (22%), Positives = 163/414 (39%), Gaps = 68/414 (16%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
           +   N+  +GA  +  +D   A  +AW AACK    ++ +P+ +  L   ++ +G     
Sbjct: 18  TKTCNILSYGAVADNSTDVGPAITSAW-AACK-SGGLVYIPSGNYALNTWVTLTGGS--- 72

Query: 167 NIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPI 226
               QLDG I     +      ++   D T  +  +   KG + G G V+  +  Y    
Sbjct: 73  ATAIQLDGIIYRTGTASGN---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYG--- 126

Query: 227 DDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQC 286
                                                 LR     + +V  I + ++P  
Sbjct: 127 -----------------------------------ARILRLTDVTHFSVHDIILVDAPAF 151

Query: 287 HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346
           H   D C    V+++++    +    DGI +  S ++ +H   +   D+CV++++  +N+
Sbjct: 152 HFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNI 209

Query: 347 YVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVL 406
            V ++ C    G ++GSLG D     V++I  R+V   ++     IK+  GGSG+V  VL
Sbjct: 210 LVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVL 265

Query: 407 FSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGT----YTVKPVHFACS 462
             N         + ID ++   +        V L+ IT +  KGT     T  P+   CS
Sbjct: 266 LENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQLNNITVKNWKGTEANGATRPPIRVVCS 323

Query: 463 DSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTPTHPPIACLQKGKRPS 516
           D+ PC D+TL  I +        +Y   C  A+G           CL+     +
Sbjct: 324 DTAPCTDLTLEDIAIWTESGSSELY--LCRSAYGSGY--------CLKDSSSHT 367
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.79
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.77
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.77
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.74
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.7
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.65
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.57
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.56
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.43
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.52
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.12
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.97
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.92
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.79
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.71
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.63
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.56
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.48
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.35
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.27
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.21
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.04
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.98
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.84
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.39
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.94
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.57
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.55
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 90.7
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=4.8e-63  Score=524.12  Aligned_cols=345  Identities=26%  Similarity=0.450  Sum_probs=300.3

Q ss_pred             CCcceeeecccccCCCCCcchHHHHHHHHhcccceeeeEEecCceeEEEeeeccccccccceEEEEecceEEccCCCccc
Q 009748          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDW  185 (527)
Q Consensus       106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~Gtl~~~~~~~~~  185 (527)
                      ..++|||+||||+|||++|||+|||+||+ ||+. |++||||+|.+|+.++|.|.+   .+++.|+++|+|++......|
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~-gg~V~iP~Gty~l~~~i~l~g---~~~~~l~~~G~i~~~~~~~~~   91 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS-GGLVYIPSGNYALNTWVTLTG---GSATAIQLDGIIYRTGTASGN   91 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB-TCEEEECSSEEEECSCEEEES---CEEEEEEECSEEEECCCCSSE
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC-CCEEEECCCcEEEeCcEEEcC---CCceEEEEeEEEEeccCCccC
Confidence            35799999999999999999999999997 5654 789999999444667899988   578999999999987655433


Q ss_pred             ccceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcceE
Q 009748          186 GKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTAL  265 (527)
Q Consensus       186 ~~~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i  265 (527)
                         ...|....+.+.+++.|+|+|||+|..||...                                      ..+|++|
T Consensus        92 ---~~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~--------------------------------------~~~p~~l  130 (422)
T d1rmga_          92 ---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG--------------------------------------TYGARIL  130 (422)
T ss_dssp             ---EEEEEEEEEEEEECSSSCCEEECCTHHHHTTT--------------------------------------CCCCEEE
T ss_pred             ---EEEeccCccEEEEEeecceEEecCcceecCCC--------------------------------------CCCCcEE
Confidence               34455666777788899999999999999751                                      1367899


Q ss_pred             EEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCce
Q 009748          266 RFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSN  345 (527)
Q Consensus       266 ~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~N  345 (527)
                      +|.+|+|++|+|++++|+++|++++..|++++|+|++|.++ +.+|+||||+.++ ||+|+||+|.++||||+++++++|
T Consensus       131 ~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~s-nv~I~n~~i~~gDDcIaiks~s~n  208 (422)
T d1rmga_         131 RLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANN  208 (422)
T ss_dssp             EEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEEEEEEEECC-SSTTCCSEEEEEE-EEEEEEEEEESSSEEEEEEEEEEE
T ss_pred             EEEeeeeeEEECcEecCCCceEEEEeccccEEEEeeEEcCC-CCCccceEeeccc-EEEEEeeEEEcCCCccccCCCCcc
Confidence            99999999999999999999999999999999999999986 4679999999764 899999999999999999999999


Q ss_pred             eEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEEeeee
Q 009748          346 VYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFY  425 (527)
Q Consensus       346 V~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I~~~y  425 (527)
                      |+|+|++|..+||++||+++.   ...|+||+|+||++.++.+|++||++ ++.|.|+||+|+||+|+++++||.|+++|
T Consensus       209 I~i~n~~c~~g~GisiGs~g~---~~~V~nV~v~n~~~~~s~~g~~ik~~-~g~G~V~nI~f~Ni~~~nv~~pI~Id~~y  284 (422)
T d1rmga_         209 ILVESIYCNWSGGCAMGSLGA---DTDVTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYW  284 (422)
T ss_dssp             EEEEEEEEESSSEEEEEEECT---TEEEEEEEEEEEEEESSSCSEEEEEB-BCCEEEEEEEEEEEEEEEESCSEEEETBC
T ss_pred             EEEEeeEEccccceeEeeccC---CCCEEEEEEEeEEEeCCCceEEEEEc-CCCceecceEEEEEEEecccccEEEeccc
Confidence            999999999999999999874   45699999999999999999999986 45699999999999999999999999999


Q ss_pred             ecCCccccccceEEeeceeeeEeeeeEEe----eeeeeeecCCCceeeeeeeeEeecchhhhhcccCchhhhhcccCCCC
Q 009748          426 CDKSTCKNQTSAVALSGITYERVKGTYTV----KPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTP  501 (527)
Q Consensus       426 ~~~~~~~~~~~~~~i~nItf~NI~gt~~~----~pi~i~c~~~~~~~~I~f~nV~v~~~~~~~~~~~~~c~~v~g~~~~~  501 (527)
                      +....+.  .+++.|+||+|+||+||...    .++.|.|++..||+||+|+||+|+...++  ...+.|+||+|..+  
T Consensus       285 ~~~~~~~--~~~v~isnIt~~Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~--~~~~~C~na~G~~~--  358 (422)
T d1rmga_         285 SSMTAVA--GDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS--SELYLCRSAYGSGY--  358 (422)
T ss_dssp             TTSCCBS--SSCCEEEEEEEEEEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSS--CEEEEEESEEEEST--
T ss_pred             CCCCCCC--CCCeEEEEEEEEeEEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcCCCC--CcceEEECceeeEE--
Confidence            8765443  45689999999999998642    57999999999999999999999877653  23468999999774  


Q ss_pred             CCCCcchhccCCC
Q 009748          502 THPPIACLQKGKR  514 (527)
Q Consensus       502 ~~~p~~c~~~~~~  514 (527)
                            ||+.+..
T Consensus       359 ------~l~~~~~  365 (422)
T d1rmga_         359 ------CLKDSSS  365 (422)
T ss_dssp             ------TCBCCSS
T ss_pred             ------eecCCCC
Confidence                  8877665
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure