Citrus Sinensis ID: 009754

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
Protein Sequence
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEMNSKGKIEPTLQVQ
Secondary Structure (PSIPRED)
cEEccEEEEcccccccccccccccccccccEEEEEccccccEEcccccccccccccccccccEEEEEccccccEEcccccccccccccEEEEEccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHcccccccEEEEcccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccEEEccccccccccccccccccccEEEEEccccccEEccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHccccccccccccccccccEEEEcccccccEEcccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEcccccccEEcccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEccccHHHcccHHHHHHHHHHcEEEEcccHHHHHHHccccccccccEEEcccccEEEEccccccccccccccccccccccEEEEccccccEEEcccccccccHHHHcccccccEEEEcccccccccccccccccccccccccEEEEcccccHHHHccccccccccccccEEEEEccccccHccccHHHHHHHHHHcEEEEcccHcHHHHEccccccccccccccccccccEEEEcccccccccEcccccccccccccEEEEcccccHcEcccccccccHHccccccHcHcHHHHEEEEEccccccHHcHcccccEEEEcccccHHHHcccccccccccccccEEEEcccHcHHHccccccccccccEEEEcccccHHHcccHHHHHHHHHHcEEEEcccHcHHHEEccccccccccEEEcccccEEEEcccccccHccccccccccccccEEEEEccccEEEEccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHccccccccEEEc
Coil and Loop (DISEMBL)
MIFLLFYFFNihthahtfayfqvgipsslvnlnvsrcdKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSfclenytlefpslervsmthcpnmktfshgilstpklhkvqvtekeegelhhwegnkLNSTIQKCYEEMigfrdmeylqlsyfphlkeiwhgqalpvsfFNNLARLVVddctnmssaipANLLRCLNnlqwlevrncdsiEEVLHLeeqnadkehrgplfpklyglrlidlpklkrfcnftgniielpelqhltiqncpdmetFISNSVVhvttdnkepqkltseENFLLAHqvqplfdekvsfprlRWLELSGLHKVQHLWKENDESNKAFANLESLEISecsklqklvppswhlenlealevskchglinlltfstseSLVNLGRMMIADCKMIEQIIQLQVgeeakdcnvfkELRYLELyclpsltsfclgnyalefpslkqvvvrqcpkmkifsqgvldtpmlnkvnvteeekdddegcwegnLNDTIKKLFNEMnskgkieptlqvq
Flexible Loop (DISEMBL)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRhvgeeakenriaFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTfshgilstpkLHKVQVTEKeegelhhwegnklnstIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLeeqnadkehrgplfPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKifsqgvldtpmlNKVNVTeeekdddegcwegNLNDTIKKLFnemnskgkieptlqvq
Low Complexity Region (SEG)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEMNSKGKIEPTLQVQ
Disordered region (IsUnstruct)
*IFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQ*****HRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTT***********ENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNV*********GCWEGNLNDTIKKL*****************
Disordered Region (DISOPRED)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQ*******GPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTF*TSESLVNLGRMMIADCKMIEQII**********CNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEMNSKGKIEPTLQVQ
Disordered Region (DISEMBL)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNV*********GCWEGNLNDTIKKLFNEMNSKGK********
Disordered Region (DISPRO)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEMNSKGKIEPTLQVQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIFLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEMNSKGKIEPTLQVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	526	2.2.26 [Sep-21-2011]
P23799	630	Putative adenylate cyclas	N/A	no	0.530	0.442	0.241	1e-05
Q42484	909	Disease resistance protei	yes	no	0.370	0.214	0.242	1e-05
P26337	630	Putative adenylate cyclas	N/A	no	0.530	0.442	0.235	8e-05

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 137/340 (40%), Gaps = 61/340 (17%)

Query: 83  EFPSLERVSMTHCPNMKTFSHGILSTPKLH-----KVQVTEKEEGELHHWEGNKLNSTIQ 137
              +LE +S+ +C N+      I + P+L      +  VT+K+   +H  +G      I 
Sbjct: 204 RLKTLEALSLDNCINITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHP-DGKLKMLDIS 262

Query: 138 KCYE-----EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAI 192
            C+E      + G R +E L LS   ++ +        +  F+NL  L +  C  + SA+
Sbjct: 263 SCHEITDLTAIGGVRSLEKLSLSGCWNVTKGLE----ELCKFSNLRELDISGCLVLGSAV 318

Query: 193 PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK-RF 251
              +L+ L NL+ L V NC + +++  LE                   RL++L KL    
Sbjct: 319 ---VLKNLINLKVLSVSNCKNFKDLNGLE-------------------RLVNLEKLNLSG 356

Query: 252 CNFT---GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQV 308
           C+     G +  L  L+ L I  C  +  F          +N E   L   ++F     +
Sbjct: 357 CHGVSSLGFVANLSNLKELDISGCESLVCFDGLQ----DLNNLEVLYLRDVKSFTNVGAI 412

Query: 309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW 368
           + L        ++R L+LSG  ++  L        +    LE L +  C ++     P W
Sbjct: 413 KNL-------SKMRELDLSGCERITSL-----SGLETLKGLEELSLEGCGEIMSF-DPIW 459

Query: 369 HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408
            L +L  L VS+C    NL   S  + L  L  M +  C+
Sbjct: 460 SLYHLRVLYVSECG---NLEDLSGLQCLTGLEEMYLHGCR 496

May be involved in the postranscriptional regulation of genes in VSG expression sites.
Trypanosoma brucei brucei (taxid: 5702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 36/231 (15%)

Query: 239 GLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTS 298
           G+ ++ L  LK    F G + +   +QHL ++ C ++  F   ++  +T   +  ++L+ 
Sbjct: 671 GITVLSLETLKTLFEF-GALHK--HIQHLHVEECNELLYF---NLPSLTNHGRNLRRLSI 724

Query: 299 EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS 358
           +    L + V P   E    P L  L L  LH +  +W  N  S     N+  + IS C+
Sbjct: 725 KSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWG-NSVSQDCLRNIRCINISHCN 783

Query: 359 KLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQV 418
           KL+ +   SW ++ L  LEV                       + + DC+ IE++I    
Sbjct: 784 KLKNV---SW-VQKLPKLEV-----------------------IELFDCREIEELISEHE 816

Query: 419 GEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMK 469
               +D  +F  L+ L    LP L S     ++  F  ++ +V+  CP++K
Sbjct: 817 SPSVEDPTLFPSLKTLRTRDLPELNSILPSRFS--FQKVETLVITNCPRVK 865

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 135/340 (39%), Gaps = 61/340 (17%)

Query: 83  EFPSLERVSMTHCPNMKTFSHGILSTPKLH-----KVQVTEKEEGELHHWEGNKLNSTIQ 137
              +LE +S+  C N+      I + P+L      +  VT+K+   +H  +G        
Sbjct: 204 RLKTLEALSLDSCINITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHP-DGKLKVLRYS 262

Query: 138 KCYE-----EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAI 192
            C+E      + G R +E L LS   ++ +        +  F+NL  L +  C  + SA+
Sbjct: 263 SCHEITDLTAIGGMRSLEKLSLSGCWNVTKGLE----ELCKFSNLRELDISGCLVLGSAV 318

Query: 193 PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK-RF 251
              +L+ L NL+ L V NC + +++  LE                   RL++L KL    
Sbjct: 319 ---VLKNLINLKVLSVSNCKNFKDLNGLE-------------------RLVNLDKLNLSG 356

Query: 252 CNFT---GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQV 308
           C+     G +  L  L+ L I  C  +  F          +N E   L   ++F     +
Sbjct: 357 CHGVSSLGFVANLSNLKELDISGCESLVCFDGLQ----DLNNLEVLYLRDVKSFTNVGAI 412

Query: 309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW 368
           + L        ++R L+LSG  ++  L        +    LE L +  C ++     P W
Sbjct: 413 KNL-------SKMRELDLSGCERITSL-----SGLETLKGLEELSLEGCGEIMSF-DPIW 459

Query: 369 HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408
            L +L  L VS+C    NL   S  E +  L  + +  C+
Sbjct: 460 SLHHLRVLYVSECG---NLEDLSGLEGITGLEELYLHGCR 496

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.815	0.174	0.338	9e-53
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.653	0.256	0.376	1e-45
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.477	0.106	0.420	4e-42
358344895	906	Resistance protein RGC2, partial [Medica	0.676	0.392	0.350	3e-40
147787802	1517	hypothetical protein VITISV_005047 [Viti	0.861	0.298	0.287	3e-40
302143647	759	unnamed protein product [Vitis vinifera]	0.865	0.599	0.265	5e-40
302143659	922	unnamed protein product [Vitis vinifera]	0.868	0.495	0.281	3e-39
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.857	0.266	0.268	7e-38
358344903	2248	Cc-nbs-lrr resistance protein [Medicago	0.823	0.192	0.301	3e-37
255581680	1126	Disease resistance protein RPS2, putativ	0.648	0.302	0.307	8e-36

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 167/493 (33%), Positives = 254/493 (51%), Gaps = 64/493 (12%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLE 88
            L  + VS C  + EI+ + G+E  E+ I FSKL+ L LD L  LT+ C  N  ++FPSLE
Sbjct: 1454 LGEMKVSNCKMLREIVANEGDEM-ESEITFSKLESLRLDDLTRLTTVCSVNCRVKFPSLE 1512

Query: 89   RVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRD 148
             + +T CP M+ FSHGI++ PKL KV +T  +EG+     G+ LN+T Q+ Y EM+G   
Sbjct: 1513 ELIVTACPRMEFFSHGIITAPKLEKVSLT--KEGDKWRSVGD-LNTTTQQLYREMVGLNG 1569

Query: 149  MEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEV 208
            +++LQLS FP L E WH Q LP  FF NL  LVVD+C+  SS++P+NLL  LN L+ LEV
Sbjct: 1570 VQHLQLSEFPTLVEKWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPFLNELEVLEV 1628

Query: 209  RNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQHL 267
            RNCDS+ +V   E  N D  + G L P L    LIDLP+L+    + +  I     L  L
Sbjct: 1629 RNCDSLAKVFDFEWSN-DYGYAGHL-PNLKKFHLIDLPRLRHIWDDISSEISGFKNLTVL 1686

Query: 268  TIQNCPDMETFISNSVV--------HVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFP 319
             I NC  +  +I N ++         V   N    +    E   LA +  P    ++ FP
Sbjct: 1687 NIHNCSSLR-YIFNPIICMGLVQLQEVEVRNCALVQAIIREG--LAKEEAP---NEIIFP 1740

Query: 320  RLRWLELSGLHKVQHLWK---------------------------ENDESNKAFANLES- 351
             L+ + L  L  + + +                               ESN     +E+ 
Sbjct: 1741 LLKSISLESLPSLINFFSGSGIVRCPSLKEITIVNCPATFTCTLLRESESNATDEIIETK 1800

Query: 352  LEISECSKLQKL---VPPSWH---------LENLEALEVSKCHGLINLLTFSTSESLVNL 399
            +E SE   L+     +   WH         +++L +L V  C  L + L+ S  ++LV+L
Sbjct: 1801 VEFSELKILKLFSINIEKIWHAHQLEMYASIQHLASLTVDGCGHLKHALSSSMVQTLVHL 1860

Query: 400  GRMMIADCKMIEQIIQLQ-VGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLK 458
             ++ + +C+M+E++I  +   EE+    + ++L +L+L  LP L  F   N  +EFP +K
Sbjct: 1861 KKLEVCNCRMMEEVIATEGFEEESTSRMLLRQLEFLKLKDLPELAQFFTSNL-IEFPVMK 1919

Query: 459  QVVVRQCPKMKIF 471
            ++ ++ CPK+  F
Sbjct: 1920 ELWLQNCPKLVAF 1932

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 202/367 (55%), Gaps = 23/367 (6%)

Query: 162  EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE 221
            E+W+GQ L +SF  NL  L++ +C ++    P++L + L NL+ L+V NC+ +EE+  LE
Sbjct: 920  EVWNGQ-LSLSF-GNLRSLMMQNCMSLLKVFPSSLFQSLQNLEVLKVENCNQLEEIFDLE 977

Query: 222  EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE----------LQHLTIQN 271
              N D  H G L PKL  + L     L+        IIE+ +          L+ L+I  
Sbjct: 978  GLNVDGGHVG-LLPKLEEMCLTGCIPLEELILDGSRIIEIWQEQFPVESFCRLRVLSICE 1036

Query: 272  CPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSF---PRLRWLELSG 328
              D+   I +S++       E   + S  +     Q++ L DE+  F    RLR LEL+ 
Sbjct: 1037 YRDILVVIPSSMLQ-RLHTLEKLTVRSCGSVKEVVQLEGLVDEENHFRALARLRELELND 1095

Query: 329  LHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL 388
            L ++++LWKEN      F NLE L+I +C  L  LVP S    NL +L++S C  LINLL
Sbjct: 1096 LPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSVSFHNLASLDISYCCSLINLL 1155

Query: 389  TFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLG 448
                ++SLV      I    M+++++  + GE A D   F +L  +EL  LP+LTSFC G
Sbjct: 1156 PPLIAKSLVQHKIFKIGRSDMMKEVVANE-GENAGDEITFCKLEEIELCVLPNLTSFCSG 1214

Query: 449  NYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKK 508
             Y+L FP L++VVV +CPKMKIFSQG+L TP L++V V   ++      W+ +LN TI  
Sbjct: 1215 VYSLSFPVLERVVVEECPKMKIFSQGLLVTPRLDRVEVGNNKEH-----WKDDLNTTIHL 1269

Query: 509  LFNEMNS 515
            LFN  N+
Sbjct: 1270 LFNTCNA 1276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 151/257 (58%), Gaps = 6/257 (2%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLE 88
            LV L V  C  + EI+   G E  ++ I FSKL+ L L  L  LTSFC  NY   FPSL+
Sbjct: 1544 LVKLIVVNCKLVTEIVAKQGGEINDD-IIFSKLEYLELVRLENLTSFCPGNYNFIFPSLK 1602

Query: 89   RVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRD 148
             + +  CP M+ FS GI STPKL  V   +    E   W GN LN+T+Q+ Y +M+G   
Sbjct: 1603 GMVVEQCPKMRIFSQGISSTPKLQGVYWKKDSMNE-KCWHGN-LNATLQQLYTKMVGCNG 1660

Query: 149  MEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEV 208
            +  L+LS FP LK+ WHGQ LP + F+NL  L VD+C  +S+AIP+N+L+ +NNL++L V
Sbjct: 1661 IWSLKLSDFPQLKDRWHGQ-LPFNCFSNLGNLTVDNCAIVSTAIPSNILKFMNNLKYLHV 1719

Query: 209  RNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT-GNIIELPELQHL 267
            +NC+S+E V  LE  +A   +   L P L  L L+DLP+L+   N     I++   L+ L
Sbjct: 1720 KNCESLEGVFDLEGLSAQAGY-DRLLPNLQELHLVDLPELRHIWNRDLPGILDFRNLKRL 1778

Query: 268  TIQNCPDMETFISNSVV 284
             + NC  +    S S+ 
Sbjct: 1779 KVHNCSSLRNIFSPSMA 1795

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344895|ref|XP_003636521.1| Resistance protein RGC2, partial [Medicago truncatula] gi|355502456|gb|AES83659.1| Resistance protein RGC2, partial [Medicago truncatula]

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 201/374 (53%), Gaps = 18/374 (4%)

Query: 149 MEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEV 208
           ++ L+LS  P LK +W         F NL+ + V DC ++ S  P ++ R +  LQ L V
Sbjct: 113 LKKLKLSNLPKLKHVWKEDPHYTMRFQNLSVVSVADCKSLISLFPLSVARDMMQLQSLLV 172

Query: 209 RNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG-NIIELPELQHL 267
            NC  IEE++  EE     E    +FP L  + L +L KLK F  F G + ++   L+ +
Sbjct: 173 SNC-GIEEIVVKEE--GPDEMVKFVFPHLTSIELDNLTKLKAF--FVGVHSLQCKSLKTI 227

Query: 268 TIQNCPDMETFISNSV-VHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLEL 326
            +  CP +E F +  + +  ++ N E    T +  F+   +   L     S P+ R LEL
Sbjct: 228 KLFKCPRIELFKAEPLKLQESSKNVEQNISTYQPLFVFEEE---LLTSVESTPQFRELEL 284

Query: 327 SGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN 386
             LHK++++ KE  + +     LES+++ +CS L KLVP S     +  LEV+ C+GLIN
Sbjct: 285 LQLHKLKYICKEGFQMDPFLHFLESIDVCQCSSLIKLVPSSVTFSYMTYLEVTNCNGLIN 344

Query: 387 LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFC 446
           L+T ST++SLV L  M I  C  +E I+  +  E+  +  VF  L+ LEL  L  L  FC
Sbjct: 345 LITHSTAKSLVKLTTMKIEMCNWLEDIVNGK--EDETNEIVFCSLQTLELISLQRLIRFC 402

Query: 447 LGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTI 506
                + FP L+ VVV++CP+M++FS GV +T  L  V      + D+E   EG+LN TI
Sbjct: 403 SCPCPIMFPLLEVVVVKECPRMELFSLGVTNTTNLQNV------QTDEENHREGDLNRTI 456

Query: 507 KKLFNEMNSKGKIE 520
           KK+F +  + G+ +
Sbjct: 457 KKMFFDKVAFGEFK 470

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera]

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 155/539 (28%), Positives = 248/539 (46%), Gaps = 86/539 (15%)

Query: 26   PSSLVNL---NVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82
            PS L NL    V  CDK+E+             +AF  L+ L +  L  +          
Sbjct: 918  PSLLQNLQVLTVENCDKLEQ-------------VAFPSLEFLNIVGLDNVKKIWHSQLPQ 964

Query: 83   E-FPSLERVSMTHCPN-MKTFSHGILSTPKLHKVQVTEKEE----GELHHWEGNKLNSTI 136
            + F  L+RV +  C   +  F   +L+  +L  ++  + E+     E+   EG  +N   
Sbjct: 965  DSFSKLKRVKVATCGELLNIFPSSMLN--RLQSLRFLKAEDCSSLEEVFDVEGTNVN--- 1019

Query: 137  QKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANL 196
                +E +    +  L L   P +++IW+     +  F NL  + +D+C ++ +  PA+L
Sbjct: 1020 ---VKEGVTVTQLSQLILRSLPKVEKIWNEDPHGILNFQNLQSITIDECQSLKNLFPASL 1076

Query: 197  LRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG 256
            +R L  LQ L V  C  IEE+  + + N        +FPK+  L L  L +L+ F  + G
Sbjct: 1077 VRDLVQLQELHVLCC-GIEEI--VAKDNGVDTQATFVFPKVTSLELSYLHQLRSF--YPG 1131

Query: 257  NIIE-LPELQHLTIQNCPDMETFISNSVVHVTTDNK----------EPQKLTSEENFLLA 305
                  P L+ LT++ C  +  F   +       ++          +P +  + E   L 
Sbjct: 1132 AHPSWWPSLKQLTVRECYKVNVFAFENPTFRQRHHEGNLDMPLSLLQPVEFPNLEELTLD 1191

Query: 306  H----QVQPLFDEKVSFPRLRWLE------------------------------LSGLHK 331
            H    ++ P      SFPRLR L+                              L  L +
Sbjct: 1192 HNKDTEIWPEQFPVDSFPRLRVLDDVIQFKEVFQLEGLDNENQAKRLGRLREIWLCDLPE 1251

Query: 332  VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFS 391
            + HLWKEN +      +L+SLE+  C +L  LVP S   +NL  L+V  C  L +L++ S
Sbjct: 1252 LTHLWKENSKPGLDLLSLKSLEVRNCVRLINLVPSSASFQNLATLDVQSCGSLRSLISPS 1311

Query: 392  TSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYA 451
             ++SLV L  + I    M+E+++  + GE A +   F +L+++ L CL +LTSF  G Y 
Sbjct: 1312 VAKSLVKLKTLKIGGSHMMEEVVANEEGEAADEI-AFCKLQHMALKCLSNLTSFSSGGYI 1370

Query: 452  LEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLF 510
              FPSL+ +V+++CPKMKIFS G++ TP L ++ V      DDE  W+ +LN TI  LF
Sbjct: 1371 FSFPSLEHMVLKKCPKMKIFSPGLVTTPRLERIKV-----GDDEWHWQDDLNTTIHNLF 1424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 159/598 (26%), Positives = 257/598 (42%), Gaps = 143/598 (23%)

Query: 51  AKENRIAFSKLKVLILDYLPTLTSFCLENY---------------------TLEFPSLER 89
           A    I F KL  + L+ LP LTSF    Y                      + FPSL+ 
Sbjct: 167 APVGNIIFPKLSDIKLESLPNLTSFVSPGYHSLQRLHHADLDTPFPVLFDERVAFPSLKF 226

Query: 90  VSMTHCPNMKTFSHGILSTPKLHKVQVTEKEE-GEL------------------------ 124
           + ++   N+K   H  +      K++V +    GEL                        
Sbjct: 227 LIISGLDNVKKIWHNQIPQDSFSKLEVVKVASCGELLNIFPSCVLKRSQSLRLMEVVDCS 286

Query: 125 -----HHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179
                   EG  +N  ++    E +    +  L L   P +++IW+     +  F NL  
Sbjct: 287 LLEEVFDVEGTNVNVNVK----EGVTVTQLSQLILRLLPKVEKIWNKDPHGILNFQNLKS 342

Query: 180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYG 239
           + +D C ++ +  PA+L++ L  L+ LE+R+C  IEE+  + + N  +     +FPK+  
Sbjct: 343 IFIDKCQSLKNLFPASLVKDLVQLEKLELRSC-GIEEI--VAKDNEAETAAKFVFPKVTS 399

Query: 240 LRLIDLPKLKRFCNFTG-NIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTS 298
           L L++L +L+ F  + G +  + P L+ L ++ C  +  F S +       ++    + S
Sbjct: 400 LILVNLHQLRSF--YPGAHTSQWPLLKELIVRACDKVNVFASETPTFQRRHHEGSFDMPS 457

Query: 299 EENFLLAHQVQ-PLFDEKV-----------------SFPRLRWLELSG------------ 328
            +   L  QV  P  +E +                 SFPRLR+L++ G            
Sbjct: 458 LQPLFLLQQVALPYLEELILNDNGNTEIWQEQFPMDSFPRLRYLKVYGYIDILVVIPSFM 517

Query: 329 -----------------------------------LHKVQHLW-----------KENDES 342
                                              L +++ +W           KEN +S
Sbjct: 518 LQRSHNLEKLNVRRCSSVKEIFQLEGLDEENQAQRLGRLREIWLRDLPALTHLWKENSKS 577

Query: 343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRM 402
                +LESLE+  C  L  LVP S   +NL+ L+V  C  L +L++ S ++SLV L ++
Sbjct: 578 ILDLQSLESLEVWNCDSLISLVPCSVSFQNLDTLDVWSCSNLRSLISPSVAKSLVKLRKL 637

Query: 403 MIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVV 462
            I    M+E+++  + G EA D   F +L+++ L CLP+LTSF  G Y   FPSL+ +VV
Sbjct: 638 KIGGLHMMEEVVANE-GGEAVDEIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVV 696

Query: 463 RQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEMNSKGKIE 520
            +CPKMKIFS  ++ TP L +V V      DDE  W  +LN TI  LF + +   ++E
Sbjct: 697 EECPKMKIFSPSLVTTPKLERVEVA-----DDEWHWHNDLNTTIHNLFKKTHGNVEVE 749

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143659|emb|CBI22412.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 161/572 (28%), Positives = 252/572 (44%), Gaps = 115/572 (20%)

Query: 37  CDKIEEIIRHVGEEAKENRIAF-SKLKVLILDYLPTLTSFC----LENY----------- 80
           CDK+E++         +  +    KL  L L  LP L   C      N+           
Sbjct: 373 CDKLEQVFDLEELNVDDGHVGLLPKLGKLRLIDLPKLRHICNCGSSRNHFPSSMASAPVG 432

Query: 81  TLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY 140
            + FP L  +S+   PN+ +F      +P  H +Q        LHH +   L++     +
Sbjct: 433 NIIFPKLFYISLGFLPNLTSFV-----SPGYHSLQ-------RLHHAD---LDTPFPVLF 477

Query: 141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL 200
           +E + F  + +L +    ++K+IW  Q +P   F+ L ++VV  C  + +  P+ +L+ L
Sbjct: 478 DERVAFPSLNFLFIGSLDNVKKIWPNQ-IPQDSFSKLEKVVVASCGQLLNIFPSCMLKRL 536

Query: 201 NNLQWLEVRNCDSIEEVLHLEEQ--NADKEHRGP--LFPK-------------------- 236
            +LQ+L    C S+E V  +E    N D    G   +FPK                    
Sbjct: 537 QSLQFLRAMECSSLEAVFDVEGTNVNVDCSSLGNTNVFPKITCLDLRNLPQLRSFYPGAH 596

Query: 237 ------LYGLRLIDLPKLKRFCNFT---------GNI---------IELPELQHLTIQNC 272
                 L  LR+ +  KL  F   T         GN+         +  P L+ L + + 
Sbjct: 597 TSQWPLLEELRVSECYKLDVFAFETPTFQQRHGEGNLDMPLFFLPHVAFPNLEELRLGDN 656

Query: 273 PDME---------TFISNSVVHV----------------TTDNKEPQKLTSEENFLLAHQ 307
            D E         +F    V+HV                   N E  K+ S  +     Q
Sbjct: 657 RDTEIWPEQFPVDSFPRLRVLHVHDYRDILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQ 716

Query: 308 VQPLFDEKVS--FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP 365
           ++ L +E  +    RLR +EL  L  +  LWKEN E      +LESLE+  C  L  LVP
Sbjct: 717 LEGLDEENQAKRLGRLREIELHDLPGLTRLWKENSEPGLDLQSLESLEVWNCGSLINLVP 776

Query: 366 PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDC 425
            S   +NL  L+V  C  L +L++ S ++SLV L  + I    M+E+++  + G EA D 
Sbjct: 777 SSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSDMMEEVVANE-GGEATDE 835

Query: 426 NVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVN 485
             F +L+++EL  LP+LTSF  G Y   FPSL+Q++V++CPKMK+FS  ++  P L ++ 
Sbjct: 836 ITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFSPSLVTPPRLKRIK 895

Query: 486 VTEEEKDDDEGCWEGNLNDTIKKLFNEMNSKG 517
           V      D+E  W+ +LN  I   F  +N+ G
Sbjct: 896 V-----GDEEWPWQDDLNTAIHNSF--INAHG 920

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 156/582 (26%), Positives = 251/582 (43%), Gaps = 131/582 (22%)

Query: 51   AKENRIAFSKLKVLILDYLPTLTSFCLENY---------------------TLEFPSLER 89
            A    I F KL  + L+ LP LTSF    Y                      + FPSL+ 
Sbjct: 1034 APVGNIIFPKLSDITLESLPNLTSFVSPGYHSLQRLHHADLDTPFPVLFNERVAFPSLKF 1093

Query: 90   VSMTHCPNMKTFSHGILSTPKLHKVQVTEKEE-GEL---------HHWEGNKLN-----S 134
            + ++   N+K   H  +      K++V +    GEL            +  +L      S
Sbjct: 1094 LIISGLDNVKKIWHNQIPQDSFSKLEVVKVASCGELLNIFPSCVLKRSQSLRLMEVVDCS 1153

Query: 135  TIQKCYE-------EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTN 187
             +++ ++       E +    +  L L   P +++IW+     +  F NL  + +D C +
Sbjct: 1154 LLEEVFDVEGTNVNEGVTVTHLSRLILRLLPKVEKIWNKDPHGILNFQNLKSIFIDKCQS 1213

Query: 188  MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK 247
            + +  PA+L++ L  L+ L++R+C  IEE+  + + N  +     +FPK+  L+L  L +
Sbjct: 1214 LKNLFPASLVKDLVQLEKLKLRSC-GIEEI--VAKDNEAETAAKFVFPKVTSLKLFHLHQ 1270

Query: 248  LKRFCNFTG-NIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAH 306
            L+ F  + G +  + P L+ L ++ C  +  F S +       ++    +   +   L  
Sbjct: 1271 LRSF--YPGAHTSQWPLLKELIVRACDKVNVFASETPTFQRRHHEGSFDMPILQPLFLLQ 1328

Query: 307  QVQ-PLFDEKV-----------------SFPRLRWLELSG---------------LHKVQ 333
            QV  P  +E +                 SFPRLR L + G               LH ++
Sbjct: 1329 QVGFPYLEELILDDNGNTEIWQEQFPMDSFPRLRCLNVRGYGDILVVIPSFMLQRLHNLE 1388

Query: 334  HL-------------------------------------------WKENDESNKAFANLE 350
             L                                           WKEN +S     +LE
Sbjct: 1389 KLDVRRCSSVKEIFQLEGLDEENQAQRLGRLREIILGSLPALTHLWKENSKSGLDLQSLE 1448

Query: 351  SLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI 410
            SLE+  C+ L  LVP S   +NL+ L+V  C  L +L++ S ++SLV L ++ I    M+
Sbjct: 1449 SLEVWSCNSLISLVPCSVSFQNLDTLDVWSCSSLRSLISPSVAKSLVKLRKLKIGGSHMM 1508

Query: 411  EQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKI 470
            E+++  + G E  D   F +L+++ L CLP+LTSF  G Y   FPSL+ +VV +CPKMKI
Sbjct: 1509 EEVVANE-GGEVVDEIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKI 1567

Query: 471  FSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNE 512
            FS   + TP L +V V      DDE  W  +LN TI  LF +
Sbjct: 1568 FSPSFVTTPKLERVEVA-----DDEWHWHNDLNTTIHYLFKK 1604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344903|ref|XP_003636525.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502460|gb|AES83663.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 158/524 (30%), Positives = 242/524 (46%), Gaps = 91/524 (17%)

Query: 29   LVNLNVSRCDKIEEIIRHVGEEAKEN-RIAFSKLKVLILDYLPTLTSFCLENYTLEFPSL 87
            L  L +  C  +EEII  V     EN  IAF  L++L L+ LP+L  FC     ++FPSL
Sbjct: 1420 LTVLQIEDCSSLEEIITGV-----ENVDIAFVSLQILNLECLPSLVKFCSSECFMKFPSL 1474

Query: 88   ERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFR 147
            E+V +  CP MK FS G  STP L KV++ E +     HW+GN LN+TI   +E+ +GF 
Sbjct: 1475 EKVIVGECPRMKIFSAGHTSTPILQKVKIAENDSE--WHWKGN-LNNTIYNMFEDKVGFV 1531

Query: 148  DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAI-PANLLRCLNNLQWL 206
              ++LQLS +P LKE+W+GQ    + F +L  LVV  C  +S  +   NLL  L NL+ L
Sbjct: 1532 SFKHLQLSEYPELKELWYGQH-EHNTFRSLKYLVVHKCDFLSDVLFQPNLLEVLMNLEEL 1590

Query: 207  EVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR---------------- 250
            +V +C+S+E V  L+++ A KE       +L  L++ +LPKLK                 
Sbjct: 1591 DVEDCNSLEAVFDLKDEFA-KEIVVRNSTQLKKLKISNLPKLKHVWKEDAFPSLDTLKLS 1649

Query: 251  ---------------FCNFTGNIIE----------------LPELQHLTIQNCPDMETFI 279
                            CN T  I++                   L+HL I NCP ME  I
Sbjct: 1650 SLLNLNKVWDDNHQSMCNLTSLIVDNCVGLKYLFPSTLVKSFMNLKHLEISNCPMMEEII 1709

Query: 280  S-----NSVVHVTTDNKEPQKLTSEENF--LLAHQVQPLFDEKVS--------FP----- 319
            +     N++  V     E   L   +N   +  HQ + L   +V+        FP     
Sbjct: 1710 AKKERNNALKEVHLLKLEKIILKDMDNLKSIWHHQFETLKMLEVNNCKKIVVVFPSSMQN 1769

Query: 320  ---RLRWLELSGLHKVQHLWKEN---DESNKAFANLESLEISECSKLQKLVPPS----WH 369
                L  LE++    V+ +++ N   + S +    L+ + I    KL+K+          
Sbjct: 1770 TYNELEKLEVTNCALVEEIFELNFNENNSEEVMTQLKEVTIDGLFKLKKIWSGDPQGILS 1829

Query: 370  LENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFK 429
             +NL  + +  C  L  LL  S +    +L  + I  C+ +++I+  +         +F+
Sbjct: 1830 FQNLIYVLLDGCTSLEYLLPLSVATRCSHLKELGIKWCENMKEIVAEEKESSLSAAPIFE 1889

Query: 430  --ELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIF 471
              +L  L L+  P L  F  GN+ L  PSL+ + V +C K+K+F
Sbjct: 1890 FNQLSTLLLWHSPKLNGFYAGNHTLLCPSLRNIGVSRCTKLKLF 1933

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581680|ref|XP_002531643.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223528728|gb|EEF30739.1| Disease resistance protein RPS2, putative [Ricinus communis]

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 199/416 (47%), Gaps = 75/416 (18%)

Query: 164  WHGQALPVSF-FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE 222
            W G     SF F NL  L V  C+ +      ++   L  LQ LEV++CD + E+++ E 
Sbjct: 712  WQG-----SFDFKNLKILKVHSCSKLRYVFTPSMCLGLVQLQELEVKSCDVMAEIIN-EG 765

Query: 223  QNADKEHRGPLFPKLYGLRLIDLPKLKRF-------------------------CNFTG- 256
               ++ ++  LFP L  + L  LP+L  F                         C F G 
Sbjct: 766  LAMEETNKEVLFPLLNSIILESLPRLINFSSGSSVVQCPSLKEIRIVDCPTAFTCTFLGE 825

Query: 257  -------NIIE----LPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA 305
                    IIE     P L+ L I N  +++   S+ +   +    +  K+   E  L  
Sbjct: 826  AEANATHGIIEPEVVFPNLEELQILNMDNLKMIWSSQLQSDSFGKVKVLKMEQSEKLLKI 885

Query: 306  H--------------------QVQPLFD--------EKVSFPRLRWLELSGLHKVQHLWK 337
            +                     ++ +FD        EKV+  +LR L +  L  ++H+W 
Sbjct: 886  YPSGMLRSLRNLEDLIIKKCSTLEVVFDLKEVTNIKEKVA-SQLRKLVMEDLPNLKHVWN 944

Query: 338  ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLV 397
            E+     +F  L S+ +S+C  L  L P S   ++L  L++ KC+ L +L+  ST++SL+
Sbjct: 945  EDRLGLVSFDKLSSVYVSQCDSLITLAPSSACFQSLTTLDLVKCNKLESLVASSTAKSLI 1004

Query: 398  NLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSL 457
             L  M I +C  +++I+  + G+E  +  +F  LR L+L CLPSL SFC   +  +FP L
Sbjct: 1005 QLTEMSIKECDGMKEILTNE-GDEPNEEIIFSRLRSLKLQCLPSLLSFCSSVHCFKFPFL 1063

Query: 458  KQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEM 513
             QV+VRQCPKM++FS+G + TP L  V    E+K D E  W GNLN TI++LF +M
Sbjct: 1064 TQVIVRQCPKMQVFSRGSVITPKLQSVQQLTEDKTDKER-WSGNLNATIQQLFIDM 1118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.460	0.266	0.243	7.4e-05
TAIR|locus:2117149	1201	AT4G19050 [Arabidopsis thalian	0.587	0.257	0.249	0.00059
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.456	0.266	0.259	0.00015
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.288	0.199	0.254	0.00021
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.222	0.082	0.278	0.00047
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.321	0.174	0.268	0.0006

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 65/267 (24%), Positives = 114/267 (42%)

Query:   144 IGFRDMEYLQLSYFPHLKEIWH----GQALPV--SFFNNLARLVVDDC--TNMSSAIPAN 195
             + F  +  + LS   +L E++H    G  + V      NL +L   D   T     IP +
Sbjct:   565 LSFTSITEIPLS-IKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRD 623

Query:   196 LLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPL--FPKL--YGLRLIDLPKLKRF 251
              +  L+ L+ L +    +  E+    E  A++     L     L   G+ ++ L  LK  
Sbjct:   624 AICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTL 683

Query:   252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPL 311
               F G + +   +QHL ++ C ++  F   ++  +T   +  ++L+ +    L + V P 
Sbjct:   684 FEF-GALHK--HIQHLHVEECNELLYF---NLPSLTNHGRNLRRLSIKSCHDLEYLVTPA 737

Query:   312 FDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW--H 369
               E    P L  L L  LH +  +W  N  S     N+  + IS C+KL+ +   SW   
Sbjct:   738 DFENDWLPSLEVLTLHSLHNLTRVWG-NSVSQDCLRNIRCINISHCNKLKNV---SWVQK 793

Query:   370 LENLEALEVSKCHGLINLLTFSTSESL 396
             L  LE +E+  C  +  L++   S S+
Sbjct:   794 LPKLEVIELFDCREIEELISEHESPSV 820

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 89/357 (24%), Positives = 158/357 (44%)

Query:    81 TLEFPSLERVS-MTHCPNMKTFSHGILSTPKLHKVQV--TEKEEG---ELHHWEGNK-LN 133
             T+E  S+ R   + HC  ++   + I+ T KL  + +    K E     +  W+  K  N
Sbjct:   534 TIEKLSMLRCFILRHCSELQDLPNFIVETRKLEVIDIHGARKLESYFDRVKDWKDYKGKN 593

Query:   134 STI-QKCYEEMIGFRDMEYLQLSYFPHLKEIWHG-QALPVSFFNNLARLVVDDCTNMSSA 191
                 Q    E + F + + ++L  F HLK+  +    +P+     L RL++ +CT +   
Sbjct:   594 KNFAQLQLLEHLDFSETKIIRLPIF-HLKDSTNDFSTMPI-----LTRLLLRNCTRLKR- 646

Query:   192 IPANLLRCLNNLQWLEVRNCDSIEEVLH--LEEQNADK--EHRGPLFPKLYGL--RLIDL 245
             +P   LR L NLQ L+      + E+L   LEE+   +  +      P+L      +++L
Sbjct:   647 LPQ--LRPLTNLQILDACGATDLVEMLEVCLEEKKELRILDMSKTSLPELADTIADVVNL 704

Query:   246 PKLK-RFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL 304
              KL  R C+    I ELP ++ LT      +E F  +  + +   N        E ++L 
Sbjct:   705 NKLLLRNCSL---IEELPSIEKLT-----HLEVFDVSGCIKLKNINGS----FGEMSYL- 751

Query:   305 AHQVQPLFDEKVSFPRLRWLELSGLHK--VQHLWKENDESN-KAFANLESLEISECSKLQ 361
              H+V  L +  +S    +  ELS L +  ++   K     N +   NLE  ++S C++L+
Sbjct:   752 -HEVN-LSETNLSELPDKISELSNLKELIIRKCSKLKTLPNLEKLTNLEIFDVSGCTELE 809

Query:   362 KLVPPSWHLENLEAL-EVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ 417
              +       ENL  L +V+     +  L    SE L NL  +++ +C  ++ +  L+
Sbjct:   810 TI---EGSFENLSCLHKVNLSETNLGELPNKISE-LSNLKELILRNCSKLKALPNLE 862

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
 Identities = 66/254 (25%), Positives = 104/254 (40%)

Query:   220 LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI 279
             L+  N   EH      +L  L  +DL    R C+ +G I  L  L+ L +      +   
Sbjct:   586 LDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSISG-ISRLLSLRLLRLLGS---KVHG 641

Query:   280 SNSVVHVTTDNKEPQKLT---SEENFLLAHQVQPLFDEKVSFPRLRW-LELSGLHKVQHL 335
               SV+      +  Q+L    S E   L  ++  L         L+   +LS L  +++L
Sbjct:   642 DASVLKELQQLQNLQELAITVSAELISLDQRLAKLISNLCIEGFLQKPFDLSFLASMENL 701

Query:   336 WKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSES 395
                  E N  F+ ++  E    S   ++ P      NL  LE+ KCH + +L     + +
Sbjct:   702 SSLRVE-NSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPN 760

Query:   396 LVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFP 455
             LV L   +I D + + +II  +          F +L +L LY LP L S       L FP
Sbjct:   761 LVVL---LIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWS--PLPFP 815

Query:   456 SLKQVVVRQCPKMK 469
              L  + V  CPK++
Sbjct:   816 VLLTMDVSNCPKLR 829

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 0.00021, P = 0.00021
 Identities = 41/161 (25%), Positives = 67/161 (41%)

Query:   326 LSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLI 385
             L+ +  +  LW +N      F+ ++  E    S   ++ P      NL  L +SKCH + 
Sbjct:   583 LASMENLSSLWVKNSY----FSEIKCRESETASSYLRINPKIPCFTNLSRLGLSKCHSIK 638

Query:   386 NLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSF 445
             +L     + +LV L    I D + + +II  +          F +L  L LY LP L S 
Sbjct:   639 DLTWILFAPNLVYL---YIEDSREVGEIINKEKATNLTSITPFLKLERLILYNLPKLESI 695

Query:   446 CLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNV 486
                   L FP L  + V  CPK++         P++ +  +
Sbjct:   696 YWS--PLHFPRLLIIHVLDCPKLRKLPLNATSVPLVEEFQI 734

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
 Identities = 39/140 (27%), Positives = 67/140 (47%)

Query:   348 NLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407
             ++E L++++ S L +L  P    +NL++L +  C GL +L   + +ES  NL  ++I  C
Sbjct:  1074 DMEYLKVTDISHLMEL--P----QNLQSLHIDSCDGLTSLPE-NLTESYPNLHELLIIAC 1126

Query:   408 KMIEQI--------IQLQVGEEAKDCNVFKELR----YLELYCLPSLTSFC--LGNYALE 453
               +E          ++     + K  N  + L+    Y +L  L  + S C  L N+ L 
Sbjct:  1127 HSLESFPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYL-FIGSSCSNLVNFPLS 1185

Query:   454 -FPSLKQVVVRQCPKMKIFS 472
              FP L+ + +R C   K FS
Sbjct:  1186 LFPKLRSLSIRDCESFKTFS 1205

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 0.00060, Sum P(2) = 0.00060
 Identities = 48/179 (26%), Positives = 80/179 (44%)

Query:   325 ELSGLHKVQHLWKENDESNKAFA--NLESLEISECSKLQKLVPPSWHLENLEALEVSKCH 382
             +LS L  +++L+    E N  F+  N++  E    S    + P      NL  L + KCH
Sbjct:   695 DLSFLASMENLYGLLVE-NSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCH 753

Query:   383 GLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDC-NVFKELRYLELYCLPS 441
              + +L     + +LVNL    I D + + +II  +           F++L  L LY LP 
Sbjct:   754 SMKDLTWILFAPNLVNLD---IRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPK 810

Query:   442 LTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVT-EEEKDDDEGCWE 499
             L S       L FP L  +VV+ CPK++         P++ +  +  +  + ++E  WE
Sbjct:   811 LESIYWS--PLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQENELEWE 867

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	526
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-06

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 79/286 (27%), Positives = 128/286 (44%), Gaps = 38/286 (13%)

Query: 134 STIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP-VSFFNNLARLVVDDCTNMSSAI 192
           S ++K ++ +     +  + L    +LKEI      P +S   NL  L + DC+++   +
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLVE-L 673

Query: 193 PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252
           P+++ + LN L+ L++  C+++E +             G     LY L L    +LK F 
Sbjct: 674 PSSI-QYLNKLEDLDMSRCENLEIL-----------PTGINLKSLYRLNLSGCSRLKSFP 721

Query: 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF 312
           + + NI  L +L    I      E F SN    +  +N +   L   ++  L  +VQPL 
Sbjct: 722 DISTNISWL-DLDETAI------EEFPSN----LRLENLDELILCEMKSEKLWERVQPLT 770

Query: 313 D-EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE 371
               +  P L  L LS +  +  L      S +    LE LEI  C  L+ L P   +LE
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETL-PTGINLE 825

Query: 372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM-IEQIIQL 416
           +LE+L++S C  L      ST+ S +NL R  I +    IE+   L
Sbjct: 826 SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	526
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.58
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
KOG4341	483	consensus F-box protein containing LRR [General fu	99.4
KOG4341	483	consensus F-box protein containing LRR [General fu	99.36
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.18
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.53
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.41
PRK15386	426	type III secretion protein GogB; Provisional	98.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.22
PRK15386	426	type III secretion protein GogB; Provisional	98.21
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.85
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.28
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.04
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.63
PLN03150	623	hypothetical protein; Provisional	96.6
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.51
PLN03150	623	hypothetical protein; Provisional	96.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.33
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.19
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.86
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.52
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	87.38
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.79
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	83.67
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	82.01

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=1.3e-26  Score=261.22  Aligned_cols=433  Identities=17%  Similarity=0.117  Sum_probs=225.7

Q ss_pred             ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754            3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (526)
                      +++|++|+++.+...- ..+.+.+++|++|++++|.....+|..+++        +++|++|+++++......+..  ..
T Consensus       117 l~~L~~L~Ls~n~l~~-~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~p~~--~~  185 (968)
T PLN00113        117 SSSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNMLSGEIPNDIGS--------FSSLKVLDLGGNVLVGKIPNS--LT  185 (968)
T ss_pred             CCCCCEEECcCCcccc-ccCccccCCCCEEECcCCcccccCChHHhc--------CCCCCEEECccCcccccCChh--hh
Confidence            4678888888665443 334566888888888887433456766666        778888888876433333222  34


Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+++|++|++++|.....+|..+..+++|+.|++++              +.....++..+..+++|++|+++++.-...
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~--------------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY--------------NNLSGEIPYEIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC--------------CccCCcCChhHhcCCCCCEEECcCceeccc
Confidence            678888888888865556677777778888888873              222234455556667777777766542212


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      .+...    ..+++|++|++++|.....+ |.. +..+++|++|++++|.....+|.          ....+++|+.|++
T Consensus       252 ~p~~l----~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~l  315 (968)
T PLN00113        252 IPSSL----GNLKNLQYLFLYQNKLSGPI-PPS-IFSLQKLISLDLSDNSLSGEIPE----------LVIQLQNLEILHL  315 (968)
T ss_pred             cChhH----hCCCCCCEEECcCCeeeccC-chh-HhhccCcCEEECcCCeeccCCCh----------hHcCCCCCcEEEC
Confidence            22222    34566666666666332222 222 55666666666666643333332          2334555555555


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecCCCCcc-cc-----CcccceeeecCCCCccccc--------hhhhhh-ccc
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMET-FI-----SNSVVHVTTDNKEPQKLTS--------EENFLL-AHQ  307 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~-----~~~L~~L~i~~~~~~~~~~--------~~~~~~-~~~  307 (526)
                      +++......+..   +..+++|+.|++++|. +.. .+     ...++.++++++...+...        +..+.. ...
T Consensus       316 ~~n~~~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        316 FSNNFTGKIPVA---LTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS  391 (968)
T ss_pred             CCCccCCcCChh---HhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence            554322222221   3345555555555532 221 11     1234444444443321100        000000 000


Q ss_pred             cc-cccccCCCCCCccEEEecCCCCceEecccC--------------------ChhhhhhcccceeEeccCcCccccCCC
Q 009754          308 VQ-PLFDEKVSFPRLRWLELSGLHKVQHLWKEN--------------------DESNKAFANLESLEISECSKLQKLVPP  366 (526)
Q Consensus       308 ~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~--------------------~~~~~~l~~L~~L~l~~c~~l~~l~~~  366 (526)
                      +. ..+.....+++|+.|++.++.-...++...                    ......+++|+.|++++|.....+|..
T Consensus       392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~  471 (968)
T PLN00113        392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS  471 (968)
T ss_pred             ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence            00 001112334555555555543222222111                    000023444445555444433333322


Q ss_pred             CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceec
Q 009754          367 SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFC  446 (526)
Q Consensus       367 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  446 (526)
                      + ..++|+.|++++|.-....|.  ...++++|+.|++++|.-...++.        ....+++|+.|++++|.-...+|
T Consensus       472 ~-~~~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        472 F-GSKRLENLDLSRNQFSGAVPR--KLGSLSELMQLKLSENKLSGEIPD--------ELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             c-ccccceEEECcCCccCCccCh--hhhhhhccCEEECcCCcceeeCCh--------HHcCccCCCEEECCCCcccccCC
Confidence            2 234555555555432222222  234556666666666532222221        12346778888888875444555


Q ss_pred             CCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754          447 LGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD  493 (526)
Q Consensus       447 ~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~  493 (526)
                      .....  +++|++|++++|.....+|..+..+++|+.+++++|++.+
T Consensus       541 ~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        541 ASFSE--MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             hhHhC--cccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            54443  7888888888877666788777677888888887766654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=3e-26  Score=258.47  Aligned_cols=437  Identities=15%  Similarity=0.087  Sum_probs=281.3

Q ss_pred             ccceeEEeeccCceeeccc-c-cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCc
Q 009754            3 FLLFYFFNIHTHAHTFAYF-Q-VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY   80 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~-~-~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (526)
                      +++|++|+++.......++ . +..+++|++|++++++....+|..          .+++|++|+++++......+..  
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----------~l~~L~~L~Ls~n~~~~~~p~~--  159 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----------SIPNLETLDLSNNMLSGEIPND--  159 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc----------ccCCCCEEECcCCcccccCChH--
Confidence            6899999999876543333 3 448999999999997544455542          2789999999986543333322  


Q ss_pred             eecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCC
Q 009754           81 TLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHL  160 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  160 (526)
                      ...+++|+.|++++|.....+|..+..+++|++|++++              +.....++..+..+++|+.|+++++.-.
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~--------------n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS--------------NQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC--------------CCCcCcCChHHcCcCCccEEECcCCccC
Confidence            45799999999999976667888888999999999983              3333456777888999999999988633


Q ss_pred             ceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceE
Q 009754          161 KEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGL  240 (526)
Q Consensus       161 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L  240 (526)
                      ..++...    ..+++|++|++++|.....+ |.. ++.+++|++|++++|.....+|.          ....+++|+.|
T Consensus       226 ~~~p~~l----~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~L~~n~l~~~~p~----------~l~~l~~L~~L  289 (968)
T PLN00113        226 GEIPYEI----GGLTSLNHLDLVYNNLTGPI-PSS-LGNLKNLQYLFLYQNKLSGPIPP----------SIFSLQKLISL  289 (968)
T ss_pred             CcCChhH----hcCCCCCEEECcCceecccc-Chh-HhCCCCCCEEECcCCeeeccCch----------hHhhccCcCEE
Confidence            2333333    56899999999998544333 433 89999999999999865444543          45678999999


Q ss_pred             ecCCCccccccccCCCccccCCCcceEeeecCCCCcccc------CcccceeeecCCCCcc-ccc-hhhh------hhc-
Q 009754          241 RLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNKEPQK-LTS-EENF------LLA-  305 (526)
Q Consensus       241 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~-~~~-~~~~------~~~-  305 (526)
                      +++++.....++..   +..+++|+.|++++| .+....      ...|+.++++++...+ ++. ...+      ... 
T Consensus       290 ~Ls~n~l~~~~p~~---~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        290 DLSDNSLSGEIPEL---VIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             ECcCCeeccCCChh---HcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence            99987544444443   568999999999986 344322      3578899998887653 221 0000      000 


Q ss_pred             cccc-cccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCc
Q 009754          306 HQVQ-PLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGL  384 (526)
Q Consensus       306 ~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l  384 (526)
                      ..+. ..+.....+++|+.|++.++.-...++...    ..+++|+.|++.+|+....+|..+..+++|+.|+++++. +
T Consensus       366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~----~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l  440 (968)
T PLN00113        366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL----GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-L  440 (968)
T ss_pred             CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH----hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-c
Confidence            0000 011122234455555555432222222211    556777777777776544566666677777777777653 3


Q ss_pred             cccccchhhhhccCCceEEEecccCcceeec------------cCC---cccccccccccccceeecccccccceecCCC
Q 009754          385 INLLTFSTSESLVNLGRMMIADCKMIEQIIQ------------LQV---GEEAKDCNVFKELRYLELYCLPSLTSFCLGN  449 (526)
Q Consensus       385 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~------------~~~---~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  449 (526)
                      ...... ....+++|+.|++++|.-...++.            ...   +........+++|+.|++++|.-...+|...
T Consensus       441 ~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  519 (968)
T PLN00113        441 QGRINS-RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL  519 (968)
T ss_pred             cCccCh-hhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence            332221 224566777777766642221111            000   0001112345677777777774444555554


Q ss_pred             ccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754          450 YALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD  493 (526)
Q Consensus       450 ~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~  493 (526)
                      ..  +++|++|++++|.-...+|..+..+++|+.|++++|++.+
T Consensus       520 ~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        520 SS--CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             cC--ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence            44  7888888888876666777777678888888887776654

>PLN03210 Resistant to P

Probab=99.90  E-value=4.6e-23  Score=233.18  Aligned_cols=332  Identities=19%  Similarity=0.258  Sum_probs=186.8

Q ss_pred             cCCCccEEEecCCC--C---c-cccccCcccCC-CeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEee
Q 009754           83 EFPSLERVSMTHCP--N---M-KTFSHGILSTP-KLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLS  155 (526)
Q Consensus        83 ~~~~L~~L~l~~c~--~---l-~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~  155 (526)
                      .+++|+.|.+....  .   . ..+|.++..++ +|+.|.+.               ...+..+|..+ .+.+|+.|+++
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~---------------~~~l~~lP~~f-~~~~L~~L~L~  619 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD---------------KYPLRCMPSNF-RPENLVKLQMQ  619 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEec---------------CCCCCCCCCcC-CccCCcEEECc
Confidence            46666666664321  0   0 12344444433 46666665               22334444444 45777777777


Q ss_pred             cCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCC
Q 009754          156 YFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFP  235 (526)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~  235 (526)
                      ++. ++.+|.+.    ..+++|+.|++++|..++.++.   +..+++|+.|++++|..+..+|.          .+..++
T Consensus       620 ~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~----------si~~L~  681 (1153)
T PLN03210        620 GSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPS----------SIQYLN  681 (1153)
T ss_pred             Ccc-cccccccc----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccch----------hhhccC
Confidence            764 66666665    5677788888877766666532   66777888888887777777665          455677


Q ss_pred             ccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhhccccccccc
Q 009754          236 KLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD  313 (526)
Q Consensus       236 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~  313 (526)
                      +|+.|++++|..++.+|..    ..+++|+.|++++|..+..++  +.+++.|+++++.+..++...             
T Consensus       682 ~L~~L~L~~c~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-------------  744 (1153)
T PLN03210        682 KLEDLDMSRCENLEILPTG----INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-------------  744 (1153)
T ss_pred             CCCEEeCCCCCCcCccCCc----CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-------------
Confidence            7888888877777776542    257778888888877666655  456777777776655443211             


Q ss_pred             cCCCCCCccEEEecCCCCceEecccCC--h--hhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCcccccc
Q 009754          314 EKVSFPRLRWLELSGLHKVQHLWKEND--E--SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLT  389 (526)
Q Consensus       314 ~~~~~~~L~~L~l~~~~~l~~l~~~~~--~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~  389 (526)
                         .+++|++|.+.++... .++....  +  ....+++|+.|++++|+.+..+|..+..+++|+.|++++|+.++.+|.
T Consensus       745 ---~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        745 ---RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             ---cccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence               2345555555443210 0100000  0  002235666666666666666666666666666666666666666554


Q ss_pred             chhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCce
Q 009754          390 FSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMK  469 (526)
Q Consensus       390 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~  469 (526)
                      .   .++++|+.|++++|..++.++.           ..++|+.|++.+. .++.+|.....  +++|++|++.+|++++
T Consensus       821 ~---~~L~sL~~L~Ls~c~~L~~~p~-----------~~~nL~~L~Ls~n-~i~~iP~si~~--l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        821 G---INLESLESLDLSGCSRLRTFPD-----------ISTNISDLNLSRT-GIEEVPWWIEK--FSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             C---CCccccCEEECCCCCccccccc-----------cccccCEeECCCC-CCccChHHHhc--CCCCCEEECCCCCCcC
Confidence            2   1456666666666655544432           1244555555443 34444444333  5555555555555555


Q ss_pred             eccCCCCCCCCcceEEe
Q 009754          470 IFSQGVLDTPMLNKVNV  486 (526)
Q Consensus       470 ~lp~~~~~~~~L~~l~l  486 (526)
                      .+|.....+++|+.+++
T Consensus       884 ~l~~~~~~L~~L~~L~l  900 (1153)
T PLN03210        884 RVSLNISKLKHLETVDF  900 (1153)
T ss_pred             ccCcccccccCCCeeec
Confidence            55544444455555555

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=8e-22  Score=223.15  Aligned_cols=317  Identities=24%  Similarity=0.347  Sum_probs=225.7

Q ss_pred             CCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceec
Q 009754           85 PSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIW  164 (526)
Q Consensus        85 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  164 (526)
                      ++|+.|.+.+++ ++.+|..+ ...+|+.|++.               .+.+..++.....+++|+.|+++++..++.++
T Consensus       589 ~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~---------------~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip  651 (1153)
T PLN03210        589 PKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQ---------------GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP  651 (1153)
T ss_pred             cccEEEEecCCC-CCCCCCcC-CccCCcEEECc---------------CccccccccccccCCCCCEEECCCCCCcCcCC
Confidence            468888888774 67777655 46788888887               34456666666778888888888876665543


Q ss_pred             cCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCC
Q 009754          165 HGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLID  244 (526)
Q Consensus       165 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  244 (526)
                      . .    ..+++|++|++.+|..+..++..  ++++++|+.|++++|..++.+|.          . ..+++|+.|.+++
T Consensus       652 ~-l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~----------~-i~l~sL~~L~Lsg  713 (1153)
T PLN03210        652 D-L----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPT----------G-INLKSLYRLNLSG  713 (1153)
T ss_pred             c-c----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCC----------c-CCCCCCCEEeCCC
Confidence            2 1    35788888999888887776433  78888899999988888887764          2 2578888888888


Q ss_pred             CccccccccCCCccccCCCcceEeeecCCCCcccc----CcccceeeecCCCCccccchhhhhhccccccc-cccCCCCC
Q 009754          245 LPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI----SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPL-FDEKVSFP  319 (526)
Q Consensus       245 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  319 (526)
                      |..+..++.      ..++|+.|++.++ .++.+|    ..++..|.+.++....+..        ...+. ......++
T Consensus       714 c~~L~~~p~------~~~nL~~L~L~~n-~i~~lP~~~~l~~L~~L~l~~~~~~~l~~--------~~~~l~~~~~~~~~  778 (1153)
T PLN03210        714 CSRLKSFPD------ISTNISWLDLDET-AIEEFPSNLRLENLDELILCEMKSEKLWE--------RVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCcccccc------ccCCcCeeecCCC-ccccccccccccccccccccccchhhccc--------cccccchhhhhccc
Confidence            877776643      2457888888874 455554    2345555554432111110        00000 00112347


Q ss_pred             CccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCC
Q 009754          320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNL  399 (526)
Q Consensus       320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L  399 (526)
                      +|+.|+++++..+..+|...    +.+++|+.|++.+|+.++.+|... .+++|++|++++|..+..+|.     ..++|
T Consensus       779 sL~~L~Ls~n~~l~~lP~si----~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL  848 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSI----QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNI  848 (1153)
T ss_pred             cchheeCCCCCCccccChhh----hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----ccccc
Confidence            89999999988777777665    788999999999999898888766 688999999999988877654     23678


Q ss_pred             ceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceecc
Q 009754          400 GRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS  472 (526)
Q Consensus       400 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp  472 (526)
                      +.|++++. .++.++.        ....+++|+.|++.+|++++.++.....  ++.|+.+++.+|++++.++
T Consensus       849 ~~L~Ls~n-~i~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~~~~--L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        849 SDLNLSRT-GIEEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLNISK--LKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             CEeECCCC-CCccChH--------HHhcCCCCCEEECCCCCCcCccCccccc--ccCCCeeecCCCccccccc
Confidence            89998774 5665543        1245789999999999999988887655  8899999999999887654

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.81  E-value=8.3e-21  Score=185.38  Aligned_cols=383  Identities=18%  Similarity=0.201  Sum_probs=213.1

Q ss_pred             ccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHh
Q 009754           60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC  139 (526)
Q Consensus        60 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l  139 (526)
                      .-+.|++++ ..+.++.... ...+|+|+++++.++ .++.+|+......+|+.|.+.               ++.|..+
T Consensus        79 ~t~~Ldlsn-Nkl~~id~~~-f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~---------------~N~I~sv  140 (873)
T KOG4194|consen   79 QTQTLDLSN-NKLSHIDFEF-FYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLR---------------HNLISSV  140 (873)
T ss_pred             ceeeeeccc-cccccCcHHH-HhcCCcceeeeeccc-hhhhcccccccccceeEEeee---------------ccccccc
Confidence            344566664 3455544432 234666666666665 466666666656666666665               3444444


Q ss_pred             h-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhc
Q 009754          140 Y-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVL  218 (526)
Q Consensus       140 ~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~  218 (526)
                      . +++..++.|+.||++.+. +..+.... +|  .-.++++|+++++ .++++ ..+.+..+.+|..|.+++| .++.+|
T Consensus       141 ~se~L~~l~alrslDLSrN~-is~i~~~s-fp--~~~ni~~L~La~N-~It~l-~~~~F~~lnsL~tlkLsrN-rittLp  213 (873)
T KOG4194|consen  141 TSEELSALPALRSLDLSRNL-ISEIPKPS-FP--AKVNIKKLNLASN-RITTL-ETGHFDSLNSLLTLKLSRN-RITTLP  213 (873)
T ss_pred             cHHHHHhHhhhhhhhhhhch-hhcccCCC-CC--CCCCceEEeeccc-ccccc-ccccccccchheeeecccC-cccccC
Confidence            3 334445555555555433 22222221 11  1234555555554 23332 2222444555555555554 344444


Q ss_pred             cccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc------CcccceeeecCCC
Q 009754          219 HLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNKE  292 (526)
Q Consensus       219 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~  292 (526)
                      ..         .+..+++|+.|++... .++ +..+.. +..+++|+.|.+.. +++..+.      ...++++.+..+.
T Consensus       214 ~r---------~Fk~L~~L~~LdLnrN-~ir-ive~lt-FqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  214 QR---------SFKRLPKLESLDLNRN-RIR-IVEGLT-FQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             HH---------Hhhhcchhhhhhcccc-cee-eehhhh-hcCchhhhhhhhhh-cCcccccCcceeeecccceeecccch
Confidence            21         2233455555554332 111 111111 44455555555544 2222211      2333344433333


Q ss_pred             CccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCC
Q 009754          293 PQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLE  371 (526)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~  371 (526)
                      ...+..              ...-+++.|+.|+++. +.++.+....+   ..+++|+.|+++.+ .++.+++ .+..+.
T Consensus       281 l~~vn~--------------g~lfgLt~L~~L~lS~-NaI~rih~d~W---sftqkL~~LdLs~N-~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  281 LQAVNE--------------GWLFGLTSLEQLDLSY-NAIQRIHIDSW---SFTQKLKELDLSSN-RITRLDEGSFRVLS  341 (873)
T ss_pred             hhhhhc--------------ccccccchhhhhccch-hhhheeecchh---hhcccceeEecccc-ccccCChhHHHHHH
Confidence            222111              1122568889999987 35666666554   67789999999875 5776654 456778


Q ss_pred             CCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCcc
Q 009754          372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYA  451 (526)
Q Consensus       372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  451 (526)
                      .|+.|.++. +.+..+...+ +..+.+|++|++... .+.-.+.    ++......+++|+.|++.+. +++.++.....
T Consensus       342 ~Le~LnLs~-Nsi~~l~e~a-f~~lssL~~LdLr~N-~ls~~IE----Daa~~f~gl~~LrkL~l~gN-qlk~I~krAfs  413 (873)
T KOG4194|consen  342 QLEELNLSH-NSIDHLAEGA-FVGLSSLHKLDLRSN-ELSWCIE----DAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS  413 (873)
T ss_pred             Hhhhhcccc-cchHHHHhhH-HHHhhhhhhhcCcCC-eEEEEEe----cchhhhccchhhhheeecCc-eeeecchhhhc
Confidence            899999998 5677775543 367789999998764 2322222    12222344899999999995 78999887655


Q ss_pred             CCCCCccEEEEcCCCCceeccCCCCCCCCcceEEe-eccCCCCCcccccCChHHHHHHHHHh
Q 009754          452 LEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNV-TEEEKDDDEGCWEGNLNDTIKKLFNE  512 (526)
Q Consensus       452 ~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l-~~~~~~~~~~~~~~~~~~~l~~l~~~  512 (526)
                       .+++|++|++.+..-.+.-|+.+..+ .|++|.+ +-+.+=+....|-   ..|+.+.+.+
T Consensus       414 -gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl---~qWl~~~~lq  470 (873)
T KOG4194|consen  414 -GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWL---AQWLYRRKLQ  470 (873)
T ss_pred             -cCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHH---HHHHHhcccc
Confidence             69999999998866556666777555 8999988 3333335555565   3555555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=4.2e-21  Score=188.70  Aligned_cols=83  Identities=22%  Similarity=0.304  Sum_probs=39.8

Q ss_pred             ccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc--
Q 009754           22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK--   99 (526)
Q Consensus        22 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~--   99 (526)
                      ...++++++.|.|.. .++..+|.+.+.        +.+|++|.+...+ |....-.  ...+|.|+.+.++++ +++  
T Consensus        27 ~v~qMt~~~WLkLnr-t~L~~vPeEL~~--------lqkLEHLs~~HN~-L~~vhGE--Ls~Lp~LRsv~~R~N-~LKns   93 (1255)
T KOG0444|consen   27 DVEQMTQMTWLKLNR-TKLEQVPEELSR--------LQKLEHLSMAHNQ-LISVHGE--LSDLPRLRSVIVRDN-NLKNS   93 (1255)
T ss_pred             hHHHhhheeEEEech-hhhhhChHHHHH--------Hhhhhhhhhhhhh-hHhhhhh--hccchhhHHHhhhcc-ccccC
Confidence            444566666666665 356666665544        5555555555422 2222111  223555555555544 222  


Q ss_pred             ccccCcccCCCeeeEEec
Q 009754          100 TFSHGILSTPKLHKVQVT  117 (526)
Q Consensus       100 ~l~~~~~~~~~L~~L~l~  117 (526)
                      .+|..+..+..|..|+++
T Consensus        94 GiP~diF~l~dLt~lDLS  111 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLS  111 (1255)
T ss_pred             CCCchhcccccceeeecc
Confidence            244444444444444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.75  E-value=6.5e-19  Score=172.28  Aligned_cols=362  Identities=14%  Similarity=0.149  Sum_probs=244.5

Q ss_pred             CCCccEEEecCCCCcccc-ccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           84 FPSLERVSMTHCPNMKTF-SHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        84 ~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+.-+.|+++++. +.+. +.++..+++|+.+++.               .+....+|.-.....+|+.|++.++. +..
T Consensus        77 p~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~---------------~N~Lt~IP~f~~~sghl~~L~L~~N~-I~s  139 (873)
T KOG4194|consen   77 PSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLN---------------KNELTRIPRFGHESGHLEKLDLRHNL-ISS  139 (873)
T ss_pred             ccceeeeeccccc-cccCcHHHHhcCCcceeeeec---------------cchhhhcccccccccceeEEeeeccc-ccc
Confidence            4566789999884 5543 3455679999999998               56667777666667789999999875 332


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      +....   ...++.|++|+++.+ .++.++... +..=+++++|++++| .++.+..  |       .+..+.+|..|.+
T Consensus       140 v~se~---L~~l~alrslDLSrN-~is~i~~~s-fp~~~ni~~L~La~N-~It~l~~--~-------~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  140 VTSEE---LSALPALRSLDLSRN-LISEIPKPS-FPAKVNIKKLNLASN-RITTLET--G-------HFDSLNSLLTLKL  204 (873)
T ss_pred             ccHHH---HHhHhhhhhhhhhhc-hhhcccCCC-CCCCCCceEEeeccc-ccccccc--c-------cccccchheeeec
Confidence            21111   135789999999988 455553222 555578999999998 5666531  1       4556778999999


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecCCCCccc------cCcccceeeecCCCCccccchhhhhhccccccccccCC
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETF------ISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKV  316 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~------~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (526)
                      +.. .++.+|..  .+.++|.|+.|++.. +.++..      ...+++.+.+..+++..+....              ..
T Consensus       205 srN-rittLp~r--~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~--------------Fy  266 (873)
T KOG4194|consen  205 SRN-RITTLPQR--SFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA--------------FY  266 (873)
T ss_pred             ccC-cccccCHH--Hhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccccCcc--------------ee
Confidence            985 56766533  266799999999987 455433      2556676666666654433211              12


Q ss_pred             CCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCCCCCCCCEEeeccccCccccccchhhhh
Q 009754          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSES  395 (526)
Q Consensus       317 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  395 (526)
                      .+..+++|++.. +.++.+....+   -.++.|+.|+++.+. +..+ +..|...++|+.|+++. +.++.+++.++ ..
T Consensus       267 ~l~kme~l~L~~-N~l~~vn~g~l---fgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf-~~  339 (873)
T KOG4194|consen  267 GLEKMEHLNLET-NRLQAVNEGWL---FGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSF-RV  339 (873)
T ss_pred             eecccceeeccc-chhhhhhcccc---cccchhhhhccchhh-hheeecchhhhcccceeEeccc-cccccCChhHH-HH
Confidence            457888999876 45666655544   567899999998763 4444 46677789999999998 68888888654 67


Q ss_pred             ccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCcc-CCCCCccEEEEcCCCCceeccC-
Q 009754          396 LVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYA-LEFPSLKQVVVRQCPKMKIFSQ-  473 (526)
Q Consensus       396 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~~~~L~~L~l~~C~~l~~lp~-  473 (526)
                      +..|++|.+++. .+..+..   |    ....+.+|++|++.+..--..+.....+ -++++|++|.+.+ ++++.+|. 
T Consensus       340 L~~Le~LnLs~N-si~~l~e---~----af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr  410 (873)
T KOG4194|consen  340 LSQLEELNLSHN-SIDHLAE---G----AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR  410 (873)
T ss_pred             HHHhhhhccccc-chHHHHh---h----HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchh
Confidence            889999999885 4555433   1    1134688999999886322222111111 1589999999988 79999884 


Q ss_pred             CCCCCCCcceEEeeccCCCCCcccccCChHHHHHHHHHhh
Q 009754          474 GVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEM  513 (526)
Q Consensus       474 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~~~  513 (526)
                      .+..+++|+.|++..|.+..-...--.  ...++++.++.
T Consensus       411 Afsgl~~LE~LdL~~NaiaSIq~nAFe--~m~Lk~Lv~nS  448 (873)
T KOG4194|consen  411 AFSGLEALEHLDLGDNAIASIQPNAFE--PMELKELVMNS  448 (873)
T ss_pred             hhccCcccceecCCCCcceeecccccc--cchhhhhhhcc
Confidence            355689999999977776432222221  33667766554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=5.8e-21  Score=178.72  Aligned_cols=433  Identities=16%  Similarity=0.148  Sum_probs=224.3

Q ss_pred             cceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceec
Q 009754            4 LLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLE   83 (526)
Q Consensus         4 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (526)
                      ..+-+++.+.-.....+++++.+..+..|+.++ +++..+|+.++.        ..+++.|+.++. .+...+..  ++.
T Consensus        68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s--------~~~l~~l~~s~n-~~~el~~~--i~~  135 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGS--------LISLVKLDCSSN-ELKELPDS--IGR  135 (565)
T ss_pred             cceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhh--------hhhhhhhhcccc-ceeecCch--HHH
Confidence            345667777666666677777777777777777 467777777766        556666665542 23333333  345


Q ss_pred             CCCccEEEecCCCCccccccCcccCCCeeeEEecccccccce----eee----ccccchhhHHhhhhhcCCCCCcEEEee
Q 009754           84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELH----HWE----GNKLNSTIQKCYEEMIGFRDMEYLQLS  155 (526)
Q Consensus        84 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~----~~~~~~~~~~l~~~~~~~~~L~~L~l~  155 (526)
                      +..|+.++-.++ ++.++|.++..+.++..+.+.+.+.....    .|+    -|+..+....+|..++.+.+|+-|++.
T Consensus       136 ~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~  214 (565)
T KOG0472|consen  136 LLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLR  214 (565)
T ss_pred             Hhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence            566666665554 45566666666666666665532110000    000    011123344455555555555555555


Q ss_pred             cCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCC
Q 009754          156 YFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFP  235 (526)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~  235 (526)
                      .+. +...+ ..    +.+..|+.+++..+ .++.+ |..+..+++++.+||++++ +++++|+          ....++
T Consensus       215 ~Nk-i~~lP-ef----~gcs~L~Elh~g~N-~i~~l-pae~~~~L~~l~vLDLRdN-klke~Pd----------e~clLr  275 (565)
T KOG0472|consen  215 RNK-IRFLP-EF----PGCSLLKELHVGEN-QIEML-PAEHLKHLNSLLVLDLRDN-KLKEVPD----------EICLLR  275 (565)
T ss_pred             hcc-cccCC-CC----CccHHHHHHHhccc-HHHhh-HHHHhcccccceeeecccc-ccccCch----------HHHHhh
Confidence            443 22222 11    23555566655544 23332 4444556666666666655 5555554          334455


Q ss_pred             ccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc--------Ccccceee--ecCCCCccccchhhhhhc
Q 009754          236 KLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--------SNSVVHVT--TDNKEPQKLTSEENFLLA  305 (526)
Q Consensus       236 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--------~~~L~~L~--i~~~~~~~~~~~~~~~~~  305 (526)
                      +|+.|++++. .++.+|..   .+++ .|+.|.+.+.+ ++.+-        ..-++.+.  +...+..... .......
T Consensus       276 sL~rLDlSNN-~is~Lp~s---Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se-~~~e~~~  348 (565)
T KOG0472|consen  276 SLERLDLSNN-DISSLPYS---LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE-GGTETAM  348 (565)
T ss_pred             hhhhhcccCC-ccccCCcc---cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc-ccccccC
Confidence            5666666653 34444433   3344 55555555532 21111        00011110  0000000000 0000000


Q ss_pred             cccccccccCCCCCCccEEEecCCCCceEecccCChhh----------------------hhhcccceeEeccCcCcccc
Q 009754          306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESN----------------------KAFANLESLEISECSKLQKL  363 (526)
Q Consensus       306 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~----------------------~~l~~L~~L~l~~c~~l~~l  363 (526)
                      +.....+...-...+.+.|++++ ..++.+|.+.|.+.                      ..+..+.+.-+.+.+.+..+
T Consensus       349 t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv  427 (565)
T KOG0472|consen  349 TLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV  427 (565)
T ss_pred             CCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence            00111122223344566777766 34666665543221                      22222222222233344445


Q ss_pred             CCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccc
Q 009754          364 VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLT  443 (526)
Q Consensus       364 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  443 (526)
                      |..+..+++|..|++++ +-+.++|.+  .+.+..|++|+++.. ....++.-        ...+..++.+ +.....+.
T Consensus       428 ~~~l~~l~kLt~L~L~N-N~Ln~LP~e--~~~lv~Lq~LnlS~N-rFr~lP~~--------~y~lq~lEtl-las~nqi~  494 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSN-NLLNDLPEE--MGSLVRLQTLNLSFN-RFRMLPEC--------LYELQTLETL-LASNNQIG  494 (565)
T ss_pred             hHHHHhhhcceeeeccc-chhhhcchh--hhhhhhhheeccccc-ccccchHH--------HhhHHHHHHH-Hhcccccc
Confidence            55667788899999988 567788774  356778999998775 33333320        0011223333 33334677


Q ss_pred             eecCC-CccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754          444 SFCLG-NYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       444 ~~~~~-~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~  492 (526)
                      .++.. ..  .+++|.+|++.+ ..+..+|..++.+.+|+.|++.++...
T Consensus       495 ~vd~~~l~--nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  495 SVDPSGLK--NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccChHHhh--hhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence            77776 33  489999999976 688889988889999999999665553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.69  E-value=2.5e-19  Score=176.39  Aligned_cols=352  Identities=18%  Similarity=0.207  Sum_probs=212.4

Q ss_pred             CCCccEEEecCCCCc-cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           84 FPSLERVSMTHCPNM-KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        84 ~~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      +|-.+..+++++..- ..+|.....+++++.|.+.               .+....+|+.+..+.+|++|.++++. ++.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLn---------------rt~L~~vPeEL~~lqkLEHLs~~HN~-L~~   69 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLN---------------RTKLEQVPEELSRLQKLEHLSMAHNQ-LIS   69 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEec---------------hhhhhhChHHHHHHhhhhhhhhhhhh-hHh
Confidence            445555666655433 3466666667777777776               45566777777777777777777655 333


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      +....    +.++.|+.+.+.++.--..-.|.+ +-.+..|..||+++| +++++|.          .+..-.++..|++
T Consensus        70 vhGEL----s~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~----------~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   70 VHGEL----SDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPT----------NLEYAKNSIVLNL  133 (1255)
T ss_pred             hhhhh----ccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-hhhhcch----------hhhhhcCcEEEEc
Confidence            33333    456777777776653222222333 556777777777776 6666664          3344556666777


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecCCCCccccC-----cccceeeecCCCCcc-----ccchhhhhhc-----cc
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFIS-----NSVVHVTTDNKEPQK-----LTSEENFLLA-----HQ  307 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~~L~~L~i~~~~~~~-----~~~~~~~~~~-----~~  307 (526)
                      ++. +++.+|..  .+.++..|-.|++++ ++++.+||     ..++.|.+++++...     ++++..+...     .+
T Consensus       134 S~N-~IetIPn~--lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  134 SYN-NIETIPNS--LFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             ccC-ccccCCch--HHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence            663 45555432  144556666666666 46666663     355666666655321     1111111110     00


Q ss_pred             -cccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccc
Q 009754          308 -VQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN  386 (526)
Q Consensus       308 -~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~  386 (526)
                       +..++-++..+.+|+.++++. +++..+|...    -.+++|+.|+++++ .++.+........+|+.|.++. ++++.
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecl----y~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~  282 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECL----YKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTV  282 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccc-cCCCcchHHH----hhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhcc
Confidence             111122333445666666654 3455555443    45667777777764 4565555555556777777777 46777


Q ss_pred             cccchhhhhccCCceEEEeccc-CcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCC
Q 009754          387 LLTFSTSESLVNLGRMMIADCK-MIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQC  465 (526)
Q Consensus       387 l~~~~~~~~l~~L~~L~i~~c~-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C  465 (526)
                      +|.  .++.++.|+.|.+.+.. ..+.++.        .++.+.+|+.+...+. +++-+|++...  |+.|++|.+ +|
T Consensus       283 LP~--avcKL~kL~kLy~n~NkL~FeGiPS--------GIGKL~~Levf~aanN-~LElVPEglcR--C~kL~kL~L-~~  348 (1255)
T KOG0444|consen  283 LPD--AVCKLTKLTKLYANNNKLTFEGIPS--------GIGKLIQLEVFHAANN-KLELVPEGLCR--CVKLQKLKL-DH  348 (1255)
T ss_pred             chH--HHhhhHHHHHHHhccCcccccCCcc--------chhhhhhhHHHHhhcc-ccccCchhhhh--hHHHHHhcc-cc
Confidence            765  34677777777776542 1122222        2345677887777764 78899998877  999999999 57


Q ss_pred             CCceeccCCCCCCCCcceEEeeccCCC
Q 009754          466 PKMKIFSQGVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       466 ~~l~~lp~~~~~~~~L~~l~l~~~~~~  492 (526)
                      +.+-++|..+-.++.|+.|++..+...
T Consensus       349 NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  349 NRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cceeechhhhhhcCCcceeeccCCcCc
Confidence            888899998877899999999655443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.62  E-value=2e-18  Score=161.88  Aligned_cols=378  Identities=16%  Similarity=0.133  Sum_probs=196.7

Q ss_pred             eeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCC
Q 009754            6 FYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP   85 (526)
Q Consensus         6 l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (526)
                      ++.+++++..-....+.++.+..++.|+..+ +++.++|.++.+        +.++..|.+.+ .+++..++..  ..+.
T Consensus       116 l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~--------~~~l~~l~~~~-n~l~~l~~~~--i~m~  183 (565)
T KOG0472|consen  116 LVKLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVN--------LSKLSKLDLEG-NKLKALPENH--IAMK  183 (565)
T ss_pred             hhhhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHH--------HHHHHHhhccc-cchhhCCHHH--HHHH
Confidence            3444555555555555566666666666555 356666665544        44444444443 3344444432  2366


Q ss_pred             CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceecc
Q 009754           86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH  165 (526)
Q Consensus        86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  165 (526)
                      .|++++.-.+ -++.+|..++.+.+|..|++.               .+.+..+| ++.+|+.|++++++.+. ++-++.
T Consensus       184 ~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~---------------~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpa  245 (565)
T KOG0472|consen  184 RLKHLDCNSN-LLETLPPELGGLESLELLYLR---------------RNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPA  245 (565)
T ss_pred             HHHhcccchh-hhhcCChhhcchhhhHHHHhh---------------hcccccCC-CCCccHHHHHHHhcccH-HHhhHH
Confidence            7777766544 466777777777777777776               23333444 44445555555554432 221111


Q ss_pred             CCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754          166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (526)
Q Consensus       166 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  245 (526)
                      ..   ...++++..|+++++ +++.. |.. +..+.+|+.||++++ .++.+|.          .++++ +|+.|.+.|.
T Consensus       246 e~---~~~L~~l~vLDLRdN-klke~-Pde-~clLrsL~rLDlSNN-~is~Lp~----------sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  246 EH---LKHLNSLLVLDLRDN-KLKEV-PDE-ICLLRSLERLDLSNN-DISSLPY----------SLGNL-HLKFLALEGN  307 (565)
T ss_pred             HH---hcccccceeeecccc-ccccC-chH-HHHhhhhhhhcccCC-ccccCCc----------ccccc-eeeehhhcCC
Confidence            11   013445555555555 33333 222 444555555555554 3444443          33444 4555544443


Q ss_pred             cccccccc---------------------------------------CCCccccCCCcceEeeecCCCCccccC------
Q 009754          246 PKLKRFCN---------------------------------------FTGNIIELPELQHLTIQNCPDMETFIS------  280 (526)
Q Consensus       246 ~~l~~~~~---------------------------------------~~~~~~~~~~L~~L~l~~c~~l~~~~~------  280 (526)
                      +- ..+-.                                       ........-+.+.|++++ .+++..|.      
T Consensus       308 Pl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~  385 (565)
T KOG0472|consen  308 PL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA  385 (565)
T ss_pred             ch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHh
Confidence            21 11100                                       000122233445555554 34444441      


Q ss_pred             --cccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCc
Q 009754          281 --NSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS  358 (526)
Q Consensus       281 --~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~  358 (526)
                        .-+..+.++.+...+++.               +...+..+.+.-+.+...+..++...    ..+++|..|+++++ 
T Consensus       386 ~~~~Vt~VnfskNqL~elPk---------------~L~~lkelvT~l~lsnn~isfv~~~l----~~l~kLt~L~L~NN-  445 (565)
T KOG0472|consen  386 KSEIVTSVNFSKNQLCELPK---------------RLVELKELVTDLVLSNNKISFVPLEL----SQLQKLTFLDLSNN-  445 (565)
T ss_pred             hhcceEEEecccchHhhhhh---------------hhHHHHHHHHHHHhhcCccccchHHH----Hhhhcceeeecccc-
Confidence              123334444443333221               00000111111112222232222222    77888999999875 


Q ss_pred             CccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccc
Q 009754          359 KLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYC  438 (526)
Q Consensus       359 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  438 (526)
                      -+.++|..++.+..|+.++++.. .++.+|.  +...+..|+++-.++ .++..+...       ....+.+|.+|++.+
T Consensus       446 ~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~--~~y~lq~lEtllas~-nqi~~vd~~-------~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  446 LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPE--CLYELQTLETLLASN-NQIGSVDPS-------GLKNMRNLTTLDLQN  514 (565)
T ss_pred             hhhhcchhhhhhhhhheeccccc-ccccchH--HHhhHHHHHHHHhcc-ccccccChH-------HhhhhhhcceeccCC
Confidence            57889988888888999999984 6666665  333444455554443 355555441       224578899999987


Q ss_pred             ccccceecCCCccCCCCCccEEEEcCCCC
Q 009754          439 LPSLTSFCLGNYALEFPSLKQVVVRQCPK  467 (526)
Q Consensus       439 c~~l~~~~~~~~~~~~~~L~~L~l~~C~~  467 (526)
                      . .+..+|.....  |.+|++|.+.+.|.
T Consensus       515 N-dlq~IPp~Lgn--mtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  515 N-DLQQIPPILGN--MTNLRHLELDGNPF  540 (565)
T ss_pred             C-chhhCChhhcc--ccceeEEEecCCcc
Confidence            5 78899988887  99999999988543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.62  E-value=1.7e-17  Score=170.71  Aligned_cols=131  Identities=16%  Similarity=0.233  Sum_probs=95.7

Q ss_pred             hhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccccc
Q 009754          344 KAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAK  423 (526)
Q Consensus       344 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~  423 (526)
                      ..++.|+.|+++++.--....+.+.++.+|+.|+++. +.+..+|.. ...+++.|+.|++++. +++.++.        
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas-~~~kle~LeeL~LSGN-kL~~Lp~--------  424 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPAS-KLRKLEELEELNLSGN-KLTTLPD--------  424 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHH-HHhchHHhHHHhcccc-hhhhhhH--------
Confidence            4566778888887643334445677889999999998 567777774 4578899999999985 5776653        


Q ss_pred             ccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCcee--ccCCCCCCCCcceEEeeccCC
Q 009754          424 DCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKI--FSQGVLDTPMLNKVNVTEEEK  491 (526)
Q Consensus       424 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~--lp~~~~~~~~L~~l~l~~~~~  491 (526)
                      ....+++|++|...+. .+..+|+ ...  ++.|+.+|+ .|++++.  +|... ..|+||+|+++||.+
T Consensus       425 tva~~~~L~tL~ahsN-~l~~fPe-~~~--l~qL~~lDl-S~N~L~~~~l~~~~-p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSN-QLLSFPE-LAQ--LPQLKVLDL-SCNNLSEVTLPEAL-PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHHhhhhhHHHhhcCC-ceeechh-hhh--cCcceEEec-ccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence            1134788888888774 6888884 333  899999999 4788874  55544 238999999988775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.58  E-value=3.6e-17  Score=168.35  Aligned_cols=390  Identities=15%  Similarity=0.101  Sum_probs=211.1

Q ss_pred             CceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcccC
Q 009754           29 LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILST  108 (526)
Q Consensus        29 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~  108 (526)
                      |+.|||++ +.+...|..++.        +..|+.|.++. ..+...+..  ...+.+|+.+.|.++ .+..+|.++..+
T Consensus        47 L~~l~lsn-n~~~~fp~~it~--------l~~L~~ln~s~-n~i~~vp~s--~~~~~~l~~lnL~~n-~l~~lP~~~~~l  113 (1081)
T KOG0618|consen   47 LKSLDLSN-NQISSFPIQITL--------LSHLRQLNLSR-NYIRSVPSS--CSNMRNLQYLNLKNN-RLQSLPASISEL  113 (1081)
T ss_pred             eEEeeccc-cccccCCchhhh--------HHHHhhcccch-hhHhhCchh--hhhhhcchhheeccc-hhhcCchhHHhh
Confidence            77777777 367777776665        66777777663 334444322  445777777777754 567777777777


Q ss_pred             CCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCc
Q 009754          109 PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNM  188 (526)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l  188 (526)
                      .+|++|+++               -+.+...|.-+..++.++.+..+++..+..  .+.       ..++.+++..+...
T Consensus       114 knl~~LdlS---------------~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~--lg~-------~~ik~~~l~~n~l~  169 (1081)
T KOG0618|consen  114 KNLQYLDLS---------------FNHFGPIPLVIEVLTAEEELAASNNEKIQR--LGQ-------TSIKKLDLRLNVLG  169 (1081)
T ss_pred             hcccccccc---------------hhccCCCchhHHhhhHHHHHhhhcchhhhh--hcc-------ccchhhhhhhhhcc
Confidence            777777777               223333333333444444444444411111  111       11444555444332


Q ss_pred             ccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEe
Q 009754          189 SSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLT  268 (526)
Q Consensus       189 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~  268 (526)
                      ..+ +.+ +..+..  .|++++|.-. ..            .+..+++|+.+..... .+..+      ...-++|+.|+
T Consensus       170 ~~~-~~~-i~~l~~--~ldLr~N~~~-~~------------dls~~~~l~~l~c~rn-~ls~l------~~~g~~l~~L~  225 (1081)
T KOG0618|consen  170 GSF-LID-IYNLTH--QLDLRYNEME-VL------------DLSNLANLEVLHCERN-QLSEL------EISGPSLTALY  225 (1081)
T ss_pred             cch-hcc-hhhhhe--eeecccchhh-hh------------hhhhccchhhhhhhhc-ccceE------EecCcchheee
Confidence            222 111 223222  3666666322 21            3345566666654432 33333      22456777777


Q ss_pred             eecCCCCcccc---CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhh
Q 009754          269 IQNCPDMETFI---SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKA  345 (526)
Q Consensus       269 l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~  345 (526)
                      ..+|+-.+...   |..++.++++.+....++  +|+.             .+.+|+.+.... +.+..++.+.    ..
T Consensus       226 a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp--~wi~-------------~~~nle~l~~n~-N~l~~lp~ri----~~  285 (1081)
T KOG0618|consen  226 ADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP--EWIG-------------ACANLEALNANH-NRLVALPLRI----SR  285 (1081)
T ss_pred             eccCcceeeccccccccceeeecchhhhhcch--HHHH-------------hcccceEecccc-hhHHhhHHHH----hh
Confidence            77765332222   566777777777766666  4443             346666666655 2345554444    45


Q ss_pred             hcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchh---------------------------------
Q 009754          346 FANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFST---------------------------------  392 (526)
Q Consensus       346 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---------------------------------  392 (526)
                      .++|+.|.+..| .++.+|+....+.+|++|++.. +++.++|...+                                 
T Consensus       286 ~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~  363 (1081)
T KOG0618|consen  286 ITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE  363 (1081)
T ss_pred             hhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH
Confidence            566666666554 4566666656566666666665 34555443111                                 


Q ss_pred             ---------------hhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCc
Q 009754          393 ---------------SESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSL  457 (526)
Q Consensus       393 ---------------~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L  457 (526)
                                     +.+..+|+.|++++. .+..++.       .....++.|+.|.+++. +|+.+|.....  ++.|
T Consensus       364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpa-------s~~~kle~LeeL~LSGN-kL~~Lp~tva~--~~~L  432 (1081)
T KOG0618|consen  364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPA-------SKLRKLEELEELNLSGN-KLTTLPDTVAN--LGRL  432 (1081)
T ss_pred             HHHhcCcccccchhhhccccceeeeeeccc-ccccCCH-------HHHhchHHhHHHhcccc-hhhhhhHHHHh--hhhh
Confidence                           122334444444442 2322222       11133556666666664 56666655544  7777


Q ss_pred             cEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCCCcccccCChHHHHHHHHHhhcC
Q 009754          458 KQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEMNS  515 (526)
Q Consensus       458 ~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  515 (526)
                      ++|...+ +.+..+|+ +...++|+.++++||.+.........+- +.++.+.+.++.
T Consensus       433 ~tL~ahs-N~l~~fPe-~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  433 HTLRAHS-NQLLSFPE-LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             HHHhhcC-Cceeechh-hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            7776543 56777884 4478999999999999876554444321 456666666555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=3.1e-12  Score=135.81  Aligned_cols=70  Identities=16%  Similarity=0.235  Sum_probs=39.0

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL  106 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  106 (526)
                      .+-..|+++++ .+..+|..+.          ++|+.|.+.+ .+++.++.     ..++|+.|+++++ +++.+|.   
T Consensus       201 ~~~~~LdLs~~-~LtsLP~~l~----------~~L~~L~L~~-N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~---  259 (788)
T PRK15387        201 NGNAVLNVGES-GLTTLPDCLP----------AHITTLVIPD-NNLTSLPA-----LPPELRTLEVSGN-QLTSLPV---  259 (788)
T ss_pred             CCCcEEEcCCC-CCCcCCcchh----------cCCCEEEccC-CcCCCCCC-----CCCCCcEEEecCC-ccCcccC---
Confidence            34456667664 5666666432          2566666664 34554432     2466777777666 4555553   


Q ss_pred             cCCCeeeEEec
Q 009754          107 STPKLHKVQVT  117 (526)
Q Consensus       107 ~~~~L~~L~l~  117 (526)
                      ..++|+.|++.
T Consensus       260 lp~sL~~L~Ls  270 (788)
T PRK15387        260 LPPGLLELSIF  270 (788)
T ss_pred             cccccceeecc
Confidence            23456666665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=1.9e-12  Score=137.53  Aligned_cols=257  Identities=17%  Similarity=0.141  Sum_probs=173.4

Q ss_pred             CCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccc
Q 009754          147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD  226 (526)
Q Consensus       147 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  226 (526)
                      ..-..|+++++. ++.++...      .++|+.|.+.++ +++.++.     ..++|++|++++| +++.+|.       
T Consensus       201 ~~~~~LdLs~~~-LtsLP~~l------~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~-------  259 (788)
T PRK15387        201 NGNAVLNVGESG-LTTLPDCL------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV-------  259 (788)
T ss_pred             CCCcEEEcCCCC-CCcCCcch------hcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccC-------
Confidence            556778888774 55433322      357899999887 5666532     3578999999887 6777653       


Q ss_pred             cCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhh
Q 009754          227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLL  304 (526)
Q Consensus       227 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~  304 (526)
                            ..++|+.|+++++ .+..++.      .+.+|+.|+++++ +++.++  +.+|+.|+++++.+..++...    
T Consensus       260 ------lp~sL~~L~Ls~N-~L~~Lp~------lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp----  321 (788)
T PRK15387        260 ------LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALP----  321 (788)
T ss_pred             ------cccccceeeccCC-chhhhhh------chhhcCEEECcCC-ccccccccccccceeECCCCccccCCCCc----
Confidence                  2468888888875 3555533      3457888888884 677665  467888888887766654321    


Q ss_pred             ccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCc
Q 009754          305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGL  384 (526)
Q Consensus       305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l  384 (526)
                                    .+|+.|.+.++ .++.++.       ...+|+.|+++++ .++.+|..   .++|+.|++++ +.+
T Consensus       322 --------------~~L~~L~Ls~N-~L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~-N~L  374 (788)
T PRK15387        322 --------------SELCKLWAYNN-QLTSLPT-------LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYN-NRL  374 (788)
T ss_pred             --------------ccccccccccC-ccccccc-------cccccceEecCCC-ccCCCCCC---Ccccceehhhc-ccc
Confidence                          56777777774 4555542       2357888888875 56777653   35677788877 456


Q ss_pred             cccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcC
Q 009754          385 INLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQ  464 (526)
Q Consensus       385 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~  464 (526)
                      ..+|..     .++|+.|+++++ .++.++.           .+++|+.|+++++ .++.+|..     ...|+.|++++
T Consensus       375 ~~LP~l-----~~~L~~LdLs~N-~Lt~LP~-----------l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~  431 (788)
T PRK15387        375 TSLPAL-----PSGLKELIVSGN-RLTSLPV-----------LPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYR  431 (788)
T ss_pred             ccCccc-----ccccceEEecCC-cccCCCC-----------cccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhcc
Confidence            666541     246888888775 4554443           2467888888886 57776642     35678888877


Q ss_pred             CCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754          465 CPKMKIFSQGVLDTPMLNKVNVTEEEKDD  493 (526)
Q Consensus       465 C~~l~~lp~~~~~~~~L~~l~l~~~~~~~  493 (526)
                       ++++.+|..+..+++|+.+++++|++..
T Consensus       432 -NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        432 -NQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             -CcccccChHHhhccCCCeEECCCCCCCc
Confidence             5678888877678888888887777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.40  E-value=4.6e-15  Score=140.45  Aligned_cols=295  Identities=17%  Similarity=0.168  Sum_probs=155.7

Q ss_pred             CCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccc
Q 009754          147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD  226 (526)
Q Consensus       147 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  226 (526)
                      ..|+.|.++++..+.+.+... +. ..++++++|.+.+|.++++..-..+...++.|+++++..|..+++..-..     
T Consensus       138 g~lk~LSlrG~r~v~~sslrt-~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~-----  210 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRT-FA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY-----  210 (483)
T ss_pred             cccccccccccccCCcchhhH-Hh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-----
Confidence            467788888877666544333 22 45778888888888777765444456677888888888777777654211     


Q ss_pred             cCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccC-------cccceeeecCCCCccccch
Q 009754          227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFIS-------NSVVHVTTDNKEPQKLTSE  299 (526)
Q Consensus       227 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-------~~L~~L~i~~~~~~~~~~~  299 (526)
                         ....+++|+++++++|+.+.+-. .....+.+..++.+...+|..++.-..       ..+.++++..|...+-..+
T Consensus       211 ---la~gC~kL~~lNlSwc~qi~~~g-v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~  286 (483)
T KOG4341|consen  211 ---LAEGCRKLKYLNLSWCPQISGNG-VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL  286 (483)
T ss_pred             ---HHHhhhhHHHhhhccCchhhcCc-chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence               22357778888888777666411 111133455566666666654432210       0111222222221111111


Q ss_pred             hhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC--CCCCCCCCCCEEe
Q 009754          300 ENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV--PPSWHLENLEALE  377 (526)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~  377 (526)
                      ..+            ...+..|+.|+.++|.++++.....+.  .+..+|+.+.+.+|..+++.-  ..-.+.+.|+.++
T Consensus       287 ~~i------------~~~c~~lq~l~~s~~t~~~d~~l~aLg--~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~  352 (483)
T KOG4341|consen  287 WLI------------ACGCHALQVLCYSSCTDITDEVLWALG--QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD  352 (483)
T ss_pred             HHH------------hhhhhHhhhhcccCCCCCchHHHHHHh--cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence            100            113456666666666655443322211  455666666666666554331  1223445666666


Q ss_pred             eccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCc
Q 009754          378 VSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSL  457 (526)
Q Consensus       378 l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L  457 (526)
                      +.+|....+-.....+.+++.|+.|.++.|..+++.....   ....-.....|+.+++.+||.+++....... .|++|
T Consensus       353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~---l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~L  428 (483)
T KOG4341|consen  353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH---LSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNL  428 (483)
T ss_pred             ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh---hhhccccccccceeeecCCCCchHHHHHHHh-hCccc
Confidence            6666555554333344566666666666666555441100   0000012345666666776666544333221 36667


Q ss_pred             cEEEEcCCCCcee
Q 009754          458 KQVVVRQCPKMKI  470 (526)
Q Consensus       458 ~~L~l~~C~~l~~  470 (526)
                      +.+++.+|..+++
T Consensus       429 eri~l~~~q~vtk  441 (483)
T KOG4341|consen  429 ERIELIDCQDVTK  441 (483)
T ss_pred             ceeeeechhhhhh
Confidence            7777766666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.36  E-value=1.6e-14  Score=136.75  Aligned_cols=282  Identities=16%  Similarity=0.150  Sum_probs=206.4

Q ss_pred             CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (526)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  254 (526)
                      .-|+.|.+++|..+.+.+.......+|++++|++.+|..+++..-..        ....+++|++|.+-.|..+++....
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s--------la~~C~~l~~l~L~~c~~iT~~~Lk  209 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS--------LARYCRKLRHLNLHSCSSITDVSLK  209 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH--------HHHhcchhhhhhhcccchhHHHHHH
Confidence            56899999999988776555567899999999999999888754222        4467899999999999998876432


Q ss_pred             CCccccCCCcceEeeecCCCCcccc-------CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEec
Q 009754          255 TGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELS  327 (526)
Q Consensus       255 ~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  327 (526)
                      .- ...|++|++|.++.|+.+++..       -..++++..+||...++..+..+.            ..++-+.++++.
T Consensus       210 ~l-a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~------------~~~~~i~~lnl~  276 (483)
T KOG4341|consen  210 YL-AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA------------AYCLEILKLNLQ  276 (483)
T ss_pred             HH-HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh------------ccChHhhccchh
Confidence            11 5579999999999999888743       223556666677666554444332            233556677777


Q ss_pred             CCCCceEecccCChhhhhhcccceeEeccCcCccccCC--CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEe
Q 009754          328 GLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIA  405 (526)
Q Consensus       328 ~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~  405 (526)
                      +|..+++...  +.....+..|+.+..++|..+++.+-  -.++.++|+.+.+..|.++.+.....+..+++.|+.+++.
T Consensus       277 ~c~~lTD~~~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e  354 (483)
T KOG4341|consen  277 HCNQLTDEDL--WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE  354 (483)
T ss_pred             hhccccchHH--HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence            8877766532  22226688999999999988776542  2356799999999999999998776677889999999999


Q ss_pred             cccCcceeeccCCcccccccccccccceeeccccccccee-----cCCCccCCCCCccEEEEcCCCCceecc-CCCCCCC
Q 009754          406 DCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSF-----CLGNYALEFPSLKQVVVRQCPKMKIFS-QGVLDTP  479 (526)
Q Consensus       406 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~l~~C~~l~~lp-~~~~~~~  479 (526)
                      +|..+.+-...      ..-..++.|+.|.+++|..+++.     .....+  ...|+.+.+.+||.++.-- .....++
T Consensus       355 ~~~~~~d~tL~------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~--~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  355 ECGLITDGTLA------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS--LEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             ccceehhhhHh------hhccCCchhccCChhhhhhhhhhhhhhhhhcccc--ccccceeeecCCCCchHHHHHHHhhCc
Confidence            98755543110      00146899999999999887766     333333  7789999999999987522 2344678


Q ss_pred             CcceEEee
Q 009754          480 MLNKVNVT  487 (526)
Q Consensus       480 ~L~~l~l~  487 (526)
                      +||.++++
T Consensus       427 ~Leri~l~  434 (483)
T KOG4341|consen  427 NLERIELI  434 (483)
T ss_pred             ccceeeee
Confidence            99998884

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.18  E-value=3.5e-11  Score=130.60  Aligned_cols=161  Identities=18%  Similarity=0.181  Sum_probs=108.8

Q ss_pred             ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccc-cccccccCceecCCCccEEEecCCCCc
Q 009754           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPT-LTSFCLENYTLEFPSLERVSMTHCPNM   98 (526)
Q Consensus        20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~c~~l   98 (526)
                      .+........+...+-+ +.+..++....         .++|++|-+.+... +...... ....+|.|+.|++++|..+
T Consensus       516 ~~~~~~~~~~rr~s~~~-~~~~~~~~~~~---------~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l  584 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMN-NKIEHIAGSSE---------NPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSL  584 (889)
T ss_pred             cccccchhheeEEEEec-cchhhccCCCC---------CCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCcc
Confidence            44455556667777766 46666665443         45788887776432 2222221 1335899999999999999


Q ss_pred             cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCcc
Q 009754           99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA  178 (526)
Q Consensus        99 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~  178 (526)
                      ..+|..+..+-+|++|+++               .+.+..+|..+..+..|.+|++.....+...+...    ..+++|+
T Consensus       585 ~~LP~~I~~Li~LryL~L~---------------~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~----~~L~~Lr  645 (889)
T KOG4658|consen  585 SKLPSSIGELVHLRYLDLS---------------DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL----LELQSLR  645 (889)
T ss_pred             CcCChHHhhhhhhhccccc---------------CCCccccchHHHHHHhhheeccccccccccccchh----hhccccc
Confidence            9999999999999999998               45667889999999999999999877655443332    4488999


Q ss_pred             EEEEecCCCcccCCChHHHhcCCCCCeeeecc
Q 009754          179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRN  210 (526)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~  210 (526)
                      +|.+.......+..-.+.+.++.+|+.+.+..
T Consensus       646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  646 VLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             EEEeeccccccchhhHHhhhcccchhhheeec
Confidence            99887654111111222245555555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.17  E-value=6.9e-11  Score=126.37  Aligned_cols=101  Identities=16%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             CCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccc
Q 009754          147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD  226 (526)
Q Consensus       147 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  226 (526)
                      .+...|++++.. ++.++...      .++|+.|++++| .++.+ |..   ..++|++|++++| .++.+|.       
T Consensus       178 ~~~~~L~L~~~~-LtsLP~~I------p~~L~~L~Ls~N-~LtsL-P~~---l~~nL~~L~Ls~N-~LtsLP~-------  237 (754)
T PRK15370        178 NNKTELRLKILG-LTTIPACI------PEQITTLILDNN-ELKSL-PEN---LQGNIKTLYANSN-QLTSIPA-------  237 (754)
T ss_pred             cCceEEEeCCCC-cCcCCccc------ccCCcEEEecCC-CCCcC-Chh---hccCCCEEECCCC-ccccCCh-------
Confidence            466788887754 44433322      357899999887 56665 433   2358999999887 5666653       


Q ss_pred             cCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc
Q 009754          227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI  279 (526)
Q Consensus       227 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  279 (526)
                           ...++|+.|+++++. +..+|..     ...+|+.|++++ ++++.++
T Consensus       238 -----~l~~~L~~L~Ls~N~-L~~LP~~-----l~s~L~~L~Ls~-N~L~~LP  278 (754)
T PRK15370        238 -----TLPDTIQEMELSINR-ITELPER-----LPSALQSLDLFH-NKISCLP  278 (754)
T ss_pred             -----hhhccccEEECcCCc-cCcCChh-----HhCCCCEEECcC-CccCccc
Confidence                 123578889988863 5555432     235788888886 4666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.17  E-value=8.4e-11  Score=125.74  Aligned_cols=72  Identities=11%  Similarity=0.185  Sum_probs=35.5

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL  106 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  106 (526)
                      .+...|++++. ++..+|..+.          ++++.|++.++ +++.++..    .+++|+.|++++| .++.+|..+ 
T Consensus       178 ~~~~~L~L~~~-~LtsLP~~Ip----------~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l-  239 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIPACIP----------EQITTLILDNN-ELKSLPEN----LQGNIKTLYANSN-QLTSIPATL-  239 (754)
T ss_pred             cCceEEEeCCC-CcCcCCcccc----------cCCcEEEecCC-CCCcCChh----hccCCCEEECCCC-ccccCChhh-
Confidence            34556666663 5666665332          24556666543 44444332    1345666666655 345554322 


Q ss_pred             cCCCeeeEEec
Q 009754          107 STPKLHKVQVT  117 (526)
Q Consensus       107 ~~~~L~~L~l~  117 (526)
                       ..+|+.|+++
T Consensus       240 -~~~L~~L~Ls  249 (754)
T PRK15370        240 -PDTIQEMELS  249 (754)
T ss_pred             -hccccEEECc
Confidence             1244455544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=6.8e-10  Score=120.72  Aligned_cols=216  Identities=18%  Similarity=0.263  Sum_probs=139.6

Q ss_pred             cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc
Q 009754           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (526)
Q Consensus        23 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  102 (526)
                      |..++.|++|||++|..+..+|..|++        +-+|++|++++ ..++.+|.+  ...+..|.+|++.....+...|
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~-t~I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSD-TGISHLPSG--LGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccC-CCccccchH--HHHHHhhheecccccccccccc
Confidence            777999999999999999999999988        77999999986 567777776  4578899999999888887776


Q ss_pred             cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCcc----
Q 009754          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA----  178 (526)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~----  178 (526)
                      .....+.+|++|.+..-.            ..........+..+.+|+.+....... . +....    ..++.|.    
T Consensus       636 ~i~~~L~~Lr~L~l~~s~------------~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~l----~~~~~L~~~~~  697 (889)
T KOG4658|consen  636 GILLELQSLRVLRLPRSA------------LSNDKLLLKELENLEHLENLSITISSV-L-LLEDL----LGMTRLRSLLQ  697 (889)
T ss_pred             chhhhcccccEEEeeccc------------cccchhhHHhhhcccchhhheeecchh-H-hHhhh----hhhHHHHHHhH
Confidence            666669999999988311            111122333445677777777755442 1 00000    1233333    


Q ss_pred             EEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCC-CCCccceEecCCCccccccccCCCc
Q 009754          179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGP-LFPKLYGLRLIDLPKLKRFCNFTGN  257 (526)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~  257 (526)
                      .+.+.+|...+.. +.  +..+++|+.|.+.+|...+....-.+..     ... .|+++..+.+.+|....+.. +   
T Consensus       698 ~l~~~~~~~~~~~-~~--~~~l~~L~~L~i~~~~~~e~~~~~~~~~-----~~~~~f~~l~~~~~~~~~~~r~l~-~---  765 (889)
T KOG4658|consen  698 SLSIEGCSKRTLI-SS--LGSLGNLEELSILDCGISEIVIEWEESL-----IVLLCFPNLSKVSILNCHMLRDLT-W---  765 (889)
T ss_pred             hhhhcccccceee-cc--cccccCcceEEEEcCCCchhhccccccc-----chhhhHHHHHHHHhhccccccccc-h---
Confidence            3333333322222 22  7788999999999986654433111000     111 26677777777776666542 2   


Q ss_pred             cccCCCcceEeeecCCCCcccc
Q 009754          258 IIELPELQHLTIQNCPDMETFI  279 (526)
Q Consensus       258 ~~~~~~L~~L~l~~c~~l~~~~  279 (526)
                      ....|+|+.|.+..|..+++..
T Consensus       766 ~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  766 LLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             hhccCcccEEEEecccccccCC
Confidence            3356889999999887666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.79  E-value=1.1e-10  Score=97.82  Aligned_cols=86  Identities=19%  Similarity=0.263  Sum_probs=58.3

Q ss_pred             cccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCc
Q 009754           19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM   98 (526)
Q Consensus        19 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l   98 (526)
                      .++-+-.+.+++.|.+++ +++..+|..|.+        +.+|+.|++.+ ..+++++..  ...++.|++|++.-+ .+
T Consensus        25 ~~~gLf~~s~ITrLtLSH-NKl~~vppnia~--------l~nlevln~~n-nqie~lp~~--issl~klr~lnvgmn-rl   91 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSH-NKLTVVPPNIAE--------LKNLEVLNLSN-NQIEELPTS--ISSLPKLRILNVGMN-RL   91 (264)
T ss_pred             hcccccchhhhhhhhccc-CceeecCCcHHH--------hhhhhhhhccc-chhhhcChh--hhhchhhhheecchh-hh
Confidence            344455677778888888 478888887776        67777777775 345555554  345777777776644 46


Q ss_pred             cccccCcccCCCeeeEEec
Q 009754           99 KTFSHGILSTPKLHKVQVT  117 (526)
Q Consensus        99 ~~l~~~~~~~~~L~~L~l~  117 (526)
                      ..+|+|+.+++.|+.|++.
T Consensus        92 ~~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   92 NILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hcCccccCCCchhhhhhcc
Confidence            6667777777777766666

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.78  E-value=2.1e-10  Score=96.17  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=105.3

Q ss_pred             CCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCcee
Q 009754           84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI  163 (526)
Q Consensus        84 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  163 (526)
                      +.++..|.++++ +++.+|..+..+.+|+.|++.               ++-+.++|.++..++.|+.|++..+. +.-.
T Consensus        32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~---------------nnqie~lp~~issl~klr~lnvgmnr-l~~l   94 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLS---------------NNQIEELPTSISSLPKLRILNVGMNR-LNIL   94 (264)
T ss_pred             hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcc---------------cchhhhcChhhhhchhhhheecchhh-hhcC
Confidence            455666777776 577777777778888888776               67777777777777777777776544 3334


Q ss_pred             ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecC
Q 009754          164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLI  243 (526)
Q Consensus       164 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  243 (526)
                      +.+.    ++++.|+.|++..+.--+...|.+ +..+..|+.|.++++ ..+.+|.          ..+.+++|+.|.+.
T Consensus        95 prgf----gs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dn-dfe~lp~----------dvg~lt~lqil~lr  158 (264)
T KOG0617|consen   95 PRGF----GSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDN-DFEILPP----------DVGKLTNLQILSLR  158 (264)
T ss_pred             cccc----CCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCC-CcccCCh----------hhhhhcceeEEeec
Confidence            4444    567777777777664333333433 556677777777776 5666665          44567777777777


Q ss_pred             CCccccccccCCCccccCCCcceEeeecCCCCccccC
Q 009754          244 DLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFIS  280 (526)
Q Consensus       244 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  280 (526)
                      .. ++-.+|..   ++.+..|+.|++++ ++++.+||
T Consensus       159 dn-dll~lpke---ig~lt~lrelhiqg-nrl~vlpp  190 (264)
T KOG0617|consen  159 DN-DLLSLPKE---IGDLTRLRELHIQG-NRLTVLPP  190 (264)
T ss_pred             cC-chhhCcHH---HHHHHHHHHHhccc-ceeeecCh
Confidence            64 33445444   56777888888887 56666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.67  E-value=2e-09  Score=105.90  Aligned_cols=73  Identities=16%  Similarity=0.018  Sum_probs=35.1

Q ss_pred             HHhhhhhcCCCCCcEEEeecCCCCceeccCC-CCCcCCCCCccEEEEecCCCcccCCC---hHHHhcC-CCCCeeeeccc
Q 009754          137 QKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQ-ALPVSFFNNLARLVVDDCTNMSSAIP---ANLLRCL-NNLQWLEVRNC  211 (526)
Q Consensus       137 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~l~~l-~~L~~L~l~~~  211 (526)
                      ..+...+..+++|+.|+++++.-........ .+. .. ++|++|++++|. +.+...   ...+..+ ++|++|++++|
T Consensus        71 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n  147 (319)
T cd00116          71 QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL-RS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN  147 (319)
T ss_pred             HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh-cc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence            3444555556777777777765221111100 011 11 447777777663 221100   0113444 66777777776


Q ss_pred             c
Q 009754          212 D  212 (526)
Q Consensus       212 ~  212 (526)
                      .
T Consensus       148 ~  148 (319)
T cd00116         148 R  148 (319)
T ss_pred             c
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.65  E-value=1.7e-09  Score=106.52  Aligned_cols=37  Identities=22%  Similarity=0.108  Sum_probs=18.2

Q ss_pred             CCCccEEEEecCCCcccCC---ChHHHhcCCCCCeeeeccc
Q 009754          174 FNNLARLVVDDCTNMSSAI---PANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~---~~~~l~~l~~L~~L~l~~~  211 (526)
                      +.+|++|.+.+|. ++...   ....+...+.+++++++++
T Consensus        22 l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~   61 (319)
T cd00116          22 LLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN   61 (319)
T ss_pred             HhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccc
Confidence            4556666666663 21100   0112445556666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=6.6e-09  Score=99.77  Aligned_cols=214  Identities=15%  Similarity=0.193  Sum_probs=132.7

Q ss_pred             CcCCCceEEecccccccEeccccccccccccccccccceeeecccccccccc-ccCceecCCCccEEEecCCCCcccccc
Q 009754           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFC-LENYTLEFPSLERVSMTHCPNMKTFSH  103 (526)
Q Consensus        25 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~  103 (526)
                      ++..|+...|++| .+...+..      .....|++++.|+++.. -+..|. .......+|+|+.|+++.+. +.....
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~------~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~  189 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIE------EYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFIS  189 (505)
T ss_pred             hHHhhhheeecCc-cccccchh------hhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCcc
Confidence            6778888888887 56665531      12234888888888863 233332 22334568999999988763 222111


Q ss_pred             Cc--ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEE
Q 009754          104 GI--LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV  181 (526)
Q Consensus       104 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  181 (526)
                      ..  ..+++|..|.+++|             +-...++-.....+++|+.|++.++..+.......    .-+..|+.|+
T Consensus       190 s~~~~~l~~lK~L~l~~C-------------Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~----~i~~~L~~Ld  252 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSC-------------GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST----KILQTLQELD  252 (505)
T ss_pred             ccchhhhhhhheEEeccC-------------CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh----hhhhHHhhcc
Confidence            11  23678888888865             22245555555678999999998875332111111    3367788899


Q ss_pred             EecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccC
Q 009754          182 VDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL  261 (526)
Q Consensus       182 l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  261 (526)
                      ++++..+ +.......+.+|.|+.|.++.| .+.++...++.-   -.....|++|++|++... .+.+|+.... +..+
T Consensus       253 Ls~N~li-~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s---~~kt~~f~kL~~L~i~~N-~I~~w~sl~~-l~~l  325 (505)
T KOG3207|consen  253 LSNNNLI-DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVES---LDKTHTFPKLEYLNISEN-NIRDWRSLNH-LRTL  325 (505)
T ss_pred             ccCCccc-ccccccccccccchhhhhcccc-CcchhcCCCccc---hhhhcccccceeeecccC-ccccccccch-hhcc
Confidence            9888544 3333334788889999998887 566654332100   002356889999988875 4555544433 6677


Q ss_pred             CCcceEeeec
Q 009754          262 PELQHLTIQN  271 (526)
Q Consensus       262 ~~L~~L~l~~  271 (526)
                      ++|+.|.+..
T Consensus       326 ~nlk~l~~~~  335 (505)
T KOG3207|consen  326 ENLKHLRITL  335 (505)
T ss_pred             chhhhhhccc
Confidence            7788777654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2e-09  Score=98.21  Aligned_cols=122  Identities=17%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccc
Q 009754          143 MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE  222 (526)
Q Consensus       143 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  222 (526)
                      +..|..|+.|.+.+..--.++...+    ..-.+|+.|+++.|..++.....-++.+|+.|..|++++|....+..... 
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~i----AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~-  280 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTI----AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA-  280 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHH----hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH-
Confidence            3445566666665544111222222    22355666666666555543222345566666666666665444332110 


Q ss_pred             cccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCc
Q 009754          223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDME  276 (526)
Q Consensus       223 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~  276 (526)
                             ...--++|+.|+++|+..--.......-...+|+|.+|++++|..++
T Consensus       281 -------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  281 -------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             -------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence                   11122456666666654311111011113355566666666554433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.4e-08  Score=97.48  Aligned_cols=187  Identities=17%  Similarity=0.206  Sum_probs=111.5

Q ss_pred             CCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (526)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  251 (526)
                      ..+.+|+.+.+.+| .+...+..+....|++.+.||++++ -+..+.....       ....+|+|+.|+++.......+
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~-------i~eqLp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLK-------IAEQLPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHH-------HHHhcccchhcccccccccCCc
Confidence            55778888888877 4554433345788999999999887 3433321110       3457899999999875432222


Q ss_pred             ccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCC
Q 009754          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (526)
Q Consensus       252 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  331 (526)
                       .... ...+++|+.|.++.|. ++.-   .                .-++            ...||+|+.|.+.....
T Consensus       189 -~s~~-~~~l~~lK~L~l~~CG-ls~k---~----------------V~~~------------~~~fPsl~~L~L~~N~~  234 (505)
T KOG3207|consen  189 -SSNT-TLLLSHLKQLVLNSCG-LSWK---D----------------VQWI------------LLTFPSLEVLYLEANEI  234 (505)
T ss_pred             -cccc-hhhhhhhheEEeccCC-CCHH---H----------------HHHH------------HHhCCcHHHhhhhcccc
Confidence             1111 3467788888888873 2210   0                0111            12468888888887643


Q ss_pred             ceEecccCChhhhhhcccceeEeccCcCccccC--CCCCCCCCCCEEeeccccCccccccchh-----hhhccCCceEEE
Q 009754          332 VQHLWKENDESNKAFANLESLEISECSKLQKLV--PPSWHLENLEALEVSKCHGLINLLTFST-----SESLVNLGRMMI  404 (526)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~-----~~~l~~L~~L~i  404 (526)
                      +.....+.    ..++.|++|+|++++.+ +.+  ...+.++.|..|.++.| .+.++..-..     ...+++|++|++
T Consensus       235 ~~~~~~~~----~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i  308 (505)
T KOG3207|consen  235 ILIKATST----KILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNI  308 (505)
T ss_pred             cceecchh----hhhhHHhhccccCCccc-ccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeec
Confidence            33222222    66788899999887543 333  44567788888888875 3444321111     235667777777


Q ss_pred             ecc
Q 009754          405 ADC  407 (526)
Q Consensus       405 ~~c  407 (526)
                      ...
T Consensus       309 ~~N  311 (505)
T KOG3207|consen  309 SEN  311 (505)
T ss_pred             ccC
Confidence            654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.41  E-value=2.4e-08  Score=94.73  Aligned_cols=262  Identities=18%  Similarity=0.194  Sum_probs=143.5

Q ss_pred             CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (526)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  254 (526)
                      +.-+.|.+..+ .++.+ |.+.|+.+++|+.|||++| +++.|..-         .+..+++|.+|.+++..++++++. 
T Consensus        67 ~~tveirLdqN-~I~~i-P~~aF~~l~~LRrLdLS~N-~Is~I~p~---------AF~GL~~l~~Lvlyg~NkI~~l~k-  133 (498)
T KOG4237|consen   67 PETVEIRLDQN-QISSI-PPGAFKTLHRLRRLDLSKN-NISFIAPD---------AFKGLASLLSLVLYGNNKITDLPK-  133 (498)
T ss_pred             CcceEEEeccC-CcccC-Chhhccchhhhceeccccc-chhhcChH---------hhhhhHhhhHHHhhcCCchhhhhh-
Confidence            45677778776 46666 5666899999999999988 66666421         445677888888888778888743 


Q ss_pred             CCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE
Q 009754          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH  334 (526)
Q Consensus       255 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  334 (526)
                       +.+..+.+|+.|.+..+ ++.......+++|                                +++..|.+.+ +.++.
T Consensus       134 -~~F~gL~slqrLllNan-~i~Cir~~al~dL--------------------------------~~l~lLslyD-n~~q~  178 (498)
T KOG4237|consen  134 -GAFGGLSSLQRLLLNAN-HINCIRQDALRDL--------------------------------PSLSLLSLYD-NKIQS  178 (498)
T ss_pred             -hHhhhHHHHHHHhcChh-hhcchhHHHHHHh--------------------------------hhcchhcccc-hhhhh
Confidence             33667777777777653 3433332222111                                2333333332 12222


Q ss_pred             ecccCChhhhhhcccceeEeccCcCcc------------ccCCCCCCC----------------------CCCCEE--e-
Q 009754          335 LWKENDESNKAFANLESLEISECSKLQ------------KLVPPSWHL----------------------ENLEAL--E-  377 (526)
Q Consensus       335 l~~~~~~~~~~l~~L~~L~l~~c~~l~------------~l~~~~~~l----------------------~~L~~L--~-  377 (526)
                      +....+   ..+.+++.+.+...+.+.            ..|...+.+                      -+++.+  . 
T Consensus       179 i~~~tf---~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~  255 (498)
T KOG4237|consen  179 ICKGTF---QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRL  255 (498)
T ss_pred             hccccc---cchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhh
Confidence            222211   223333333333222000            000000000                      011111  0 


Q ss_pred             eccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCc
Q 009754          378 VSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSL  457 (526)
Q Consensus       378 l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L  457 (526)
                      -..|. .....+...+..+++|+.|++++. +++.+..   +..    .....++.|.+... +++.+..+... .+..|
T Consensus       256 ~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~---~aF----e~~a~l~eL~L~~N-~l~~v~~~~f~-~ls~L  324 (498)
T KOG4237|consen  256 SSEDF-PDSICPAKCFKKLPNLRKLNLSNN-KITRIED---GAF----EGAAELQELYLTRN-KLEFVSSGMFQ-GLSGL  324 (498)
T ss_pred             ccccC-cCCcChHHHHhhcccceEeccCCC-ccchhhh---hhh----cchhhhhhhhcCcc-hHHHHHHHhhh-ccccc
Confidence            11121 112222223577899999999884 5666643   211    23578888888875 67777776543 58889


Q ss_pred             cEEEEcCCCCce-eccCCCCCCCCcceEEeeccCC-CCCccccc
Q 009754          458 KQVVVRQCPKMK-IFSQGVLDTPMLNKVNVTEEEK-DDDEGCWE  499 (526)
Q Consensus       458 ~~L~l~~C~~l~-~lp~~~~~~~~L~~l~l~~~~~-~~~~~~~~  499 (526)
                      +.|++++. +++ .-|..+....+|..+.+-.+.+ =+....|-
T Consensus       325 ~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl  367 (498)
T KOG4237|consen  325 KTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL  367 (498)
T ss_pred             eeeeecCC-eeEEEecccccccceeeeeehccCcccCccchHHH
Confidence            99999884 555 4566677788888888833322 23344444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.26  E-value=4.9e-06  Score=81.87  Aligned_cols=58  Identities=21%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK  249 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  249 (526)
                      +.++++|++++| .++.+| .    --++|++|.+++|..++.+|+          .  ..++|+.|.+++|..+.
T Consensus        51 ~~~l~~L~Is~c-~L~sLP-~----LP~sLtsL~Lsnc~nLtsLP~----------~--LP~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLP-V----LPNELTEITIENCNNLTTLPG----------S--IPEGLEKLTVCHCPEIS  108 (426)
T ss_pred             hcCCCEEEeCCC-CCcccC-C----CCCCCcEEEccCCCCcccCCc----------h--hhhhhhheEccCccccc
Confidence            456666666666 444442 1    112466666666666555543          1  12456666666655444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1e-08  Score=93.73  Aligned_cols=41  Identities=20%  Similarity=0.106  Sum_probs=19.6

Q ss_pred             CCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccC
Q 009754          368 WHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM  409 (526)
Q Consensus       368 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~  409 (526)
                      ..+|+|.+||+++|..+++--. ..+..++-|++|.++.|..
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~  350 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYD  350 (419)
T ss_pred             HhCCceeeeccccccccCchHH-HHHHhcchheeeehhhhcC
Confidence            3445555555555555544211 1123445555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.22  E-value=9.2e-07  Score=77.43  Aligned_cols=110  Identities=28%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (526)
                      .+.+|+.|+++++. ++.+.. .    ..+++|+.|.++++ .++.+ ...+...+|+|++|.+++| ++.++.++.   
T Consensus        40 ~l~~L~~L~Ls~N~-I~~l~~-l----~~L~~L~~L~L~~N-~I~~i-~~~l~~~lp~L~~L~L~~N-~I~~l~~l~---  107 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQ-ITKLEG-L----PGLPRLKTLDLSNN-RISSI-SEGLDKNLPNLQELYLSNN-KISDLNELE---  107 (175)
T ss_dssp             T-TT--EEE-TTS---S--TT---------TT--EEE--SS----S--CHHHHHH-TT--EEE-TTS----SCCCCG---
T ss_pred             hhcCCCEEECCCCC-CccccC-c----cChhhhhhcccCCC-CCCcc-ccchHHhCCcCCEEECcCC-cCCChHHhH---
Confidence            35778888888776 443321 1    35788999999887 45554 3333457899999999887 666665544   


Q ss_pred             cccCCCCCCCCccceEecCCCccccccccCC-CccccCCCcceEeeecC
Q 009754          225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT-GNIIELPELQHLTIQNC  272 (526)
Q Consensus       225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c  272 (526)
                           .+..+++|+.|.+.+++- ++.+... ..+..+|+|+.|+-...
T Consensus       108 -----~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  108 -----PLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -----GGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             -----HHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence                 566789999999988764 2222111 12567888888887664

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.21  E-value=5.3e-06  Score=81.63  Aligned_cols=133  Identities=20%  Similarity=0.271  Sum_probs=78.6

Q ss_pred             CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (526)
Q Consensus       318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (526)
                      +++++.|++++| .++++|       ..+++|++|.+.+|..++.+|..+.  ++|++|++++|..+..+|.        
T Consensus        51 ~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~--------  112 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE--------  112 (426)
T ss_pred             hcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc--------
Confidence            378888888887 677775       2235788888888888888776543  5788888888877765543        


Q ss_pred             CCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCC-CCccEEEEcCCCCceeccCCCC
Q 009754          398 NLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEF-PSLKQVVVRQCPKMKIFSQGVL  476 (526)
Q Consensus       398 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~C~~l~~lp~~~~  476 (526)
                      +|+.|++.. .....+..           .+++|+.|.+.++..........   .+ ++|++|++.+|..+. +|..+ 
T Consensus       113 sLe~L~L~~-n~~~~L~~-----------LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~L-  175 (426)
T PRK15386        113 SVRSLEIKG-SATDSIKN-----------VPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKL-  175 (426)
T ss_pred             ccceEEeCC-CCCccccc-----------CcchHhheecccccccccccccc---ccCCcccEEEecCCCccc-Ccccc-
Confidence            366677643 22222211           24566666664322111110000   12 467777777766553 44332 


Q ss_pred             CCCCcceEEe
Q 009754          477 DTPMLNKVNV  486 (526)
Q Consensus       477 ~~~~L~~l~l  486 (526)
                       +++|+.|.+
T Consensus       176 -P~SLk~L~l  184 (426)
T PRK15386        176 -PESLQSITL  184 (426)
T ss_pred             -cccCcEEEe
Confidence             456666666

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.18  E-value=3e-08  Score=94.15  Aligned_cols=81  Identities=12%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL  106 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  106 (526)
                      +.-..++|+. +.|..||.....       .+++|+.|+|+. ..++.+.++.. ..+++|-.|.+.+..+++++|.+.+
T Consensus        67 ~~tveirLdq-N~I~~iP~~aF~-------~l~~LRrLdLS~-N~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   67 PETVEIRLDQ-NQISSIPPGAFK-------TLHRLRRLDLSK-NNISFIAPDAF-KGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             CcceEEEecc-CCcccCChhhcc-------chhhhceecccc-cchhhcChHhh-hhhHhhhHHHhhcCCchhhhhhhHh
Confidence            4556677777 467777664322       267777777775 44555555542 2456666666666556777665543


Q ss_pred             -cCCCeeeEEec
Q 009754          107 -STPKLHKVQVT  117 (526)
Q Consensus       107 -~~~~L~~L~l~  117 (526)
                       .+..++.|.+.
T Consensus       137 ~gL~slqrLllN  148 (498)
T KOG4237|consen  137 GGLSSLQRLLLN  148 (498)
T ss_pred             hhHHHHHHHhcC
Confidence             35566666655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.17  E-value=1.4e-07  Score=98.45  Aligned_cols=121  Identities=20%  Similarity=0.258  Sum_probs=60.6

Q ss_pred             cCCCccEEEecCCCCccc--cccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCC
Q 009754           83 EFPSLERVSMTHCPNMKT--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHL  160 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  160 (526)
                      .+++|+.+.+.+|..+..  +-......++|+.|++.++...    +    .... .........+.+|+.++++++..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~----~~~~-~~~~~~~~~~~~L~~l~l~~~~~i  256 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLL----I----TLSP-LLLLLLLSICRKLKSLDLSGCGLV  256 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccc----c----ccch-hHhhhhhhhcCCcCccchhhhhcc
Confidence            378888888888877665  2223334566666666532000    0    0000 000112224466666666666554


Q ss_pred             ceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeecccccc
Q 009754          161 KEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSI  214 (526)
Q Consensus       161 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l  214 (526)
                      ++..... +. ..+++|++|.+.+|..+++..-..+...++.|++|++++|..+
T Consensus       257 sd~~l~~-l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  257 TDIGLSA-LA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CchhHHH-HH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            4433222 11 2255666666666654443323333455666666666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.03  E-value=1.1e-07  Score=99.16  Aligned_cols=39  Identities=26%  Similarity=0.222  Sum_probs=19.0

Q ss_pred             cceeecccccccceecCCCccCCCCCccEEEEcCCCCce
Q 009754          431 LRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMK  469 (526)
Q Consensus       431 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~  469 (526)
                      ++.|.+..|...+..........+..++.+++.+|+.+.
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence            566666666554443332222114455555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.99  E-value=1.5e-06  Score=79.78  Aligned_cols=116  Identities=17%  Similarity=0.142  Sum_probs=55.3

Q ss_pred             hhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccc
Q 009754          134 STIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS  213 (526)
Q Consensus       134 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~  213 (526)
                      +.|..+-+++.-.+.++.|+++++. +..+.. .    ..+++|+.|+++++. ++.+  .+.-.++.+.+.|.+++| .
T Consensus       294 N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-L----a~L~~L~~LDLS~N~-Ls~~--~Gwh~KLGNIKtL~La~N-~  363 (490)
T KOG1259|consen  294 NLITQIDESVKLAPKLRRLILSQNR-IRTVQN-L----AELPQLQLLDLSGNL-LAEC--VGWHLKLGNIKTLKLAQN-K  363 (490)
T ss_pred             cchhhhhhhhhhccceeEEeccccc-eeeehh-h----hhcccceEeecccch-hHhh--hhhHhhhcCEeeeehhhh-h
Confidence            4444444455455556666665554 221111 1    234556666665542 2221  111234555566666555 3


Q ss_pred             cchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecC
Q 009754          214 IEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNC  272 (526)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  272 (526)
                      ++.+.           .++.+=+|.+|+++++ ++..+....+ ++++|.|+++.+.+.
T Consensus       364 iE~LS-----------GL~KLYSLvnLDl~~N-~Ie~ldeV~~-IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  364 IETLS-----------GLRKLYSLVNLDLSSN-QIEELDEVNH-IGNLPCLETLRLTGN  409 (490)
T ss_pred             Hhhhh-----------hhHhhhhheecccccc-chhhHHHhcc-cccccHHHHHhhcCC
Confidence            44332           2334455555666553 3444433344 556666666666653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.85  E-value=1e-05  Score=70.91  Aligned_cols=108  Identities=20%  Similarity=0.250  Sum_probs=38.1

Q ss_pred             CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (526)
                      .+..+++|+++++. ++.+..   +. ..+.+|+.|++++| .++.+..   +..++.|++|++++| .++.+.+.    
T Consensus        17 n~~~~~~L~L~~n~-I~~Ie~---L~-~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i~~~----   82 (175)
T PF14580_consen   17 NPVKLRELNLRGNQ-ISTIEN---LG-ATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSISEG----   82 (175)
T ss_dssp             --------------------S------TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CHH----
T ss_pred             cccccccccccccc-cccccc---hh-hhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCccccc----
Confidence            44567888888876 332211   11 24789999999998 4555533   788999999999988 66666420    


Q ss_pred             cccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCC
Q 009754          225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCP  273 (526)
Q Consensus       225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  273 (526)
                           ....+|+|+.|.++++ .+.++..... ...+++|+.|++.++|
T Consensus        83 -----l~~~lp~L~~L~L~~N-~I~~l~~l~~-L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   83 -----LDKNLPNLQELYLSNN-KISDLNELEP-LSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -----HHHH-TT--EEE-TTS----SCCCCGG-GGG-TT--EEE-TT-G
T ss_pred             -----hHHhCCcCCEEECcCC-cCCChHHhHH-HHcCCCcceeeccCCc
Confidence                 1125899999999874 5666544433 6789999999999865

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.60  E-value=4.4e-05  Score=77.50  Aligned_cols=147  Identities=15%  Similarity=0.240  Sum_probs=86.2

Q ss_pred             CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceecc
Q 009754           86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH  165 (526)
Q Consensus        86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  165 (526)
                      +|+.|++++. .++.+|..+..+++|+.|+++               .+.+.+++......++|+.|+++++. +.+++.
T Consensus       141 nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~---------------~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~  203 (394)
T COG4886         141 NLKELDLSDN-KIESLPSPLRNLPNLKNLDLS---------------FNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPP  203 (394)
T ss_pred             hccccccccc-chhhhhhhhhccccccccccC---------------CchhhhhhhhhhhhhhhhheeccCCc-cccCch
Confidence            6666666665 355554455566777777776               45555555555456777777777655 333322


Q ss_pred             CCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754          166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (526)
Q Consensus       166 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  245 (526)
                      ..    ....+|++|.+.++........   +..++.+..+.+.++ .+...+.          ..+.++.++.|+++++
T Consensus       204 ~~----~~~~~L~~l~~~~N~~~~~~~~---~~~~~~l~~l~l~~n-~~~~~~~----------~~~~l~~l~~L~~s~n  265 (394)
T COG4886         204 EI----ELLSALEELDLSNNSIIELLSS---LSNLKNLSGLELSNN-KLEDLPE----------SIGNLSNLETLDLSNN  265 (394)
T ss_pred             hh----hhhhhhhhhhhcCCcceecchh---hhhcccccccccCCc-eeeeccc----------hhccccccceeccccc
Confidence            21    2344577777777643332212   566777777776555 3333222          3455677888887774


Q ss_pred             ccccccccCCCccccCCCcceEeeecC
Q 009754          246 PKLKRFCNFTGNIIELPELQHLTIQNC  272 (526)
Q Consensus       246 ~~l~~~~~~~~~~~~~~~L~~L~l~~c  272 (526)
                       .+++++.    +....+++.|++++.
T Consensus       266 -~i~~i~~----~~~~~~l~~L~~s~n  287 (394)
T COG4886         266 -QISSISS----LGSLTNLRELDLSGN  287 (394)
T ss_pred             -ccccccc----ccccCccCEEeccCc
Confidence             4555533    446777888888773

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.55  E-value=0.0002  Score=50.99  Aligned_cols=57  Identities=33%  Similarity=0.449  Sum_probs=26.1

Q ss_pred             ccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          348 NLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       348 ~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      +|++|++++| .++.+|. .+..+++|++|++++ +.++.++... +..+++|++|+++++
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~-f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDA-FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTT-TTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHH-HcCCCCCCEEeCcCC
Confidence            3444555444 3444442 334445555555553 2444444432 244555555555443

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.53  E-value=5.4e-05  Score=76.86  Aligned_cols=193  Identities=17%  Similarity=0.205  Sum_probs=133.4

Q ss_pred             EeeccCceeecccccCCcCCCceEEecccccccEecccccccccccccccc-ccceeeeccccccccccccCceecCCCc
Q 009754            9 FNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFS-KLKVLILDYLPTLTSFCLENYTLEFPSL   87 (526)
Q Consensus         9 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L   87 (526)
                      ++.........+..+..++.++.|++.+ +.+.+++.....        +. +|+.|++.+ ..++..+..  ...+++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~--------~~~nL~~L~l~~-N~i~~l~~~--~~~l~~L  165 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGL--------LKSNLKELDLSD-NKIESLPSP--LRNLPNL  165 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCC-cccccCcccccc--------chhhcccccccc-cchhhhhhh--hhccccc
Confidence            3344333334455666678899999998 588998886654        53 899999886 445554311  3469999


Q ss_pred             cEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCC
Q 009754           88 ERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQ  167 (526)
Q Consensus        88 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  167 (526)
                      +.|+++++ .+..++......++|+.|.++               .+.+.+++........|+++.+++.+.+.. ....
T Consensus       166 ~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls---------------~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~  228 (394)
T COG4886         166 KNLDLSFN-DLSDLPKLLSNLSNLNNLDLS---------------GNKISDLPPEIELLSALEELDLSNNSIIEL-LSSL  228 (394)
T ss_pred             cccccCCc-hhhhhhhhhhhhhhhhheecc---------------CCccccCchhhhhhhhhhhhhhcCCcceec-chhh
Confidence            99999998 477777665578889999998               567777877665667799999998852332 1111


Q ss_pred             CCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcc
Q 009754          168 ALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK  247 (526)
Q Consensus       168 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  247 (526)
                          ..+.++..+.+.++. +..+  ...+..++.++.|+++++ .+++++           ..+.+.+++.|++++...
T Consensus       229 ----~~~~~l~~l~l~~n~-~~~~--~~~~~~l~~l~~L~~s~n-~i~~i~-----------~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         229 ----SNLKNLSGLELSNNK-LEDL--PESIGNLSNLETLDLSNN-QISSIS-----------SLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ----hhcccccccccCCce-eeec--cchhccccccceeccccc-cccccc-----------cccccCccCEEeccCccc
Confidence                446677777765553 3332  122788889999999988 666664           345688999999988644


Q ss_pred             cc
Q 009754          248 LK  249 (526)
Q Consensus       248 l~  249 (526)
                      ..
T Consensus       290 ~~  291 (394)
T COG4886         290 SN  291 (394)
T ss_pred             cc
Confidence            33

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=2.5e-05  Score=83.42  Aligned_cols=160  Identities=16%  Similarity=0.158  Sum_probs=88.7

Q ss_pred             cCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCc
Q 009754           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI  105 (526)
Q Consensus        26 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  105 (526)
                      -.+|++|+++|-..+..-      -.+++..-||+|++|.+.+.....+. .......||+|..|||+++ +++.+ .|+
T Consensus       121 r~nL~~LdI~G~~~~s~~------W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~T-nI~nl-~GI  191 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNG------WPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGT-NISNL-SGI  191 (699)
T ss_pred             HHhhhhcCccccchhhcc------HHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCC-CccCc-HHH
Confidence            457888888774322111      11233346899999988875544433 1122446899999999988 56766 777


Q ss_pred             ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceec-cCCCC-CcCCCCCccEEEEe
Q 009754          106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIW-HGQAL-PVSFFNNLARLVVD  183 (526)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~-~~~~l~~L~~L~l~  183 (526)
                      ..+++||.|.+.+             ++-.-..-...+..+++|+.||+|........- ....+ ....+|+|+.|+.+
T Consensus       192 S~LknLq~L~mrn-------------Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  192 SRLKNLQVLSMRN-------------LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             hccccHHHHhccC-------------CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            8888888888872             111111222345578889999988755433210 00000 00236677777776


Q ss_pred             cCCCcccCCChHHHhcCCCCCeeee
Q 009754          184 DCTNMSSAIPANLLRCLNNLQWLEV  208 (526)
Q Consensus       184 ~c~~l~~~~~~~~l~~l~~L~~L~l  208 (526)
                      +...-..+ ....+..-|+|+.+..
T Consensus       259 gTdi~~~~-le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  259 GTDINEEI-LEELLNSHPNLQQIAA  282 (699)
T ss_pred             CcchhHHH-HHHHHHhCccHhhhhh
Confidence            65332222 2223344444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.37  E-value=0.00048  Score=49.03  Aligned_cols=58  Identities=16%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             cccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC-CCCCCCCcceEEeecc
Q 009754          429 KELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE  489 (526)
Q Consensus       429 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~l~~~  489 (526)
                      |+|++|++.++ +++.++.+... .+++|++|++++ .+++.++. .+..+++|+.++++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTT-TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHc-CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            34555555554 55555544332 356666666653 34444443 3445566666666443

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.28  E-value=1.7e-05  Score=79.25  Aligned_cols=155  Identities=17%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc
Q 009754           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (526)
Q Consensus        20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~   99 (526)
                      +++++++..|+.|||+. +.+..+|..++.         --|+.|-+.+ .+++..+..  .+..+.|.+|+.+.| .+.
T Consensus       114 p~~i~~L~~lt~l~ls~-NqlS~lp~~lC~---------lpLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~n-ei~  179 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSS-NQLSHLPDGLCD---------LPLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKN-EIQ  179 (722)
T ss_pred             chhhhhhhHHHHhhhcc-chhhcCChhhhc---------CcceeEEEec-CccccCCcc--cccchhHHHhhhhhh-hhh
Confidence            44666677777777766 366666665553         2355555553 455555554  235666666666666 455


Q ss_pred             ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccE
Q 009754          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (526)
Q Consensus       100 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~  179 (526)
                      .+|..+..+.+|+.|.+.               .+...+++.++. .--|..||++.+. +..++...    -.|..|++
T Consensus       180 slpsql~~l~slr~l~vr---------------Rn~l~~lp~El~-~LpLi~lDfScNk-is~iPv~f----r~m~~Lq~  238 (722)
T KOG0532|consen  180 SLPSQLGYLTSLRDLNVR---------------RNHLEDLPEELC-SLPLIRLDFSCNK-ISYLPVDF----RKMRHLQV  238 (722)
T ss_pred             hchHHhhhHHHHHHHHHh---------------hhhhhhCCHHHh-CCceeeeecccCc-eeecchhh----hhhhhhee
Confidence            566666666666666665               345555666554 3446666666544 44444444    45666666


Q ss_pred             EEEecCCCcccCCChH--HHhcCCCCCeeeeccc
Q 009754          180 LVVDDCTNMSSAIPAN--LLRCLNNLQWLEVRNC  211 (526)
Q Consensus       180 L~l~~c~~l~~~~~~~--~l~~l~~L~~L~l~~~  211 (526)
                      |.+.+++- .. ||..  +-+...-.++|++.-|
T Consensus       239 l~LenNPL-qS-PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  239 LQLENNPL-QS-PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eeeccCCC-CC-ChHHHHhccceeeeeeecchhc
Confidence            66666542 22 2322  1233344555555555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.28  E-value=0.00011  Score=67.96  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=83.1

Q ss_pred             CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (526)
                      .+..|+++|++++. ++.+-.+.    .-.+.++.|+++.+.. ..+ ..  ++.+++|++||+++| .+..+..     
T Consensus       282 TWq~LtelDLS~N~-I~~iDESv----KL~Pkir~L~lS~N~i-~~v-~n--La~L~~L~~LDLS~N-~Ls~~~G-----  346 (490)
T KOG1259|consen  282 TWQELTELDLSGNL-ITQIDESV----KLAPKLRRLILSQNRI-RTV-QN--LAELPQLQLLDLSGN-LLAECVG-----  346 (490)
T ss_pred             hHhhhhhccccccc-hhhhhhhh----hhccceeEEeccccce-eee-hh--hhhcccceEeecccc-hhHhhhh-----
Confidence            46778888888876 44433333    3457888888888743 322 22  788889999999887 4544432     


Q ss_pred             cccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc-------CcccceeeecCCCCcccc
Q 009754          225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDNKEPQKLT  297 (526)
Q Consensus       225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~~~~~~  297 (526)
                           ....+-+.+.|.+.++ .++++.   | .+++-+|..|++++ +++..+.       .+.++.+.+.++++..++
T Consensus       347 -----wh~KLGNIKtL~La~N-~iE~LS---G-L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  347 -----WHLKLGNIKTLKLAQN-KIETLS---G-LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             -----hHhhhcCEeeeehhhh-hHhhhh---h-hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence                 2234667788888774 455543   2 66788888888887 4554432       456677777777766655


Q ss_pred             c
Q 009754          298 S  298 (526)
Q Consensus       298 ~  298 (526)
                      .
T Consensus       416 d  416 (490)
T KOG1259|consen  416 D  416 (490)
T ss_pred             h
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.26  E-value=9.7e-05  Score=79.01  Aligned_cols=108  Identities=17%  Similarity=0.276  Sum_probs=64.4

Q ss_pred             CCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccc
Q 009754          147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD  226 (526)
Q Consensus       147 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  226 (526)
                      .+|++|++++...+...|... +. ..+|+|++|.+.+-.-..+- ......++|+|..|||+++ +++.+.        
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~T-nI~nl~--------  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGT-NISNLS--------  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCceecchh-HHHHhhccCccceeecCCC-CccCcH--------
Confidence            677788887765555555322 22 45778888887764222111 2234667788888888877 555542        


Q ss_pred             cCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754          227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN  271 (526)
Q Consensus       227 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  271 (526)
                         +.+.+++|+.|.+.+.. ++....... +..+.+|+.|+++.
T Consensus       190 ---GIS~LknLq~L~mrnLe-~e~~~~l~~-LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  190 ---GISRLKNLQVLSMRNLE-FESYQDLID-LFNLKKLRVLDISR  229 (699)
T ss_pred             ---HHhccccHHHHhccCCC-CCchhhHHH-HhcccCCCeeeccc
Confidence               44567777777776653 232222222 55677888888876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.13  E-value=2.3e-05  Score=78.36  Aligned_cols=153  Identities=18%  Similarity=0.151  Sum_probs=100.3

Q ss_pred             ccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccc
Q 009754           22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF  101 (526)
Q Consensus        22 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l  101 (526)
                      ..+.|-.|+.+.+.. +.+..+|..+.+        +..|.+|+|+. ..+..++...   ..--|+.|.++++ +++.+
T Consensus        93 ~~~~f~~Le~liLy~-n~~r~ip~~i~~--------L~~lt~l~ls~-NqlS~lp~~l---C~lpLkvli~sNN-kl~~l  158 (722)
T KOG0532|consen   93 EACAFVSLESLILYH-NCIRTIPEAICN--------LEALTFLDLSS-NQLSHLPDGL---CDLPLKVLIVSNN-KLTSL  158 (722)
T ss_pred             HHHHHHHHHHHHHHh-ccceecchhhhh--------hhHHHHhhhcc-chhhcCChhh---hcCcceeEEEecC-ccccC
Confidence            344445555555554 345566655554        55556666654 3344444442   2345777877776 68888


Q ss_pred             ccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEE
Q 009754          102 SHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV  181 (526)
Q Consensus       102 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  181 (526)
                      |..+...++|..|+.+               -+.+..++..++.+..|+.|.++.+. +.+++...     ..-.|.+|+
T Consensus       159 p~~ig~~~tl~~ld~s---------------~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El-----~~LpLi~lD  217 (722)
T KOG0532|consen  159 PEEIGLLPTLAHLDVS---------------KNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEEL-----CSLPLIRLD  217 (722)
T ss_pred             CcccccchhHHHhhhh---------------hhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHH-----hCCceeeee
Confidence            8888877888888887               45677788888888889988888765 33332222     134578888


Q ss_pred             EecCCCcccCCChHHHhcCCCCCeeeecccc
Q 009754          182 VDDCTNMSSAIPANLLRCLNNLQWLEVRNCD  212 (526)
Q Consensus       182 l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~  212 (526)
                      ++.+ ++..+ |.+ +.+|..|++|-|++|.
T Consensus       218 fScN-kis~i-Pv~-fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  218 FSCN-KISYL-PVD-FRKMRHLQVLQLENNP  245 (722)
T ss_pred             cccC-ceeec-chh-hhhhhhheeeeeccCC
Confidence            8755 66666 444 8899999999998774

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.04  E-value=5.5e-05  Score=71.35  Aligned_cols=43  Identities=23%  Similarity=0.067  Sum_probs=23.4

Q ss_pred             HhcCCCCCeeeeccccccch-hccccccccccCCCCCCCCccceEecCCCc
Q 009754          197 LRCLNNLQWLEVRNCDSIEE-VLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       197 l~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                      +..+|.|++++||+|-.-.. +..+..       .+..+..|++|.+.+|.
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~-------ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEE-------LLSSCTDLEELYLNNCG  131 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHH-------HHHhccCHHHHhhhcCC
Confidence            44667777888777632111 111110       23346777777777764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.75  E-value=3.5e-05  Score=79.20  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=79.6

Q ss_pred             ccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccC
Q 009754           87 LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHG  166 (526)
Q Consensus        87 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  166 (526)
                      |..-+.+++ .+..+-....-++.++.|+++               .+.+.++- .+..++.|++|||+++. +..++.-
T Consensus       166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLs---------------hNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l  227 (1096)
T KOG1859|consen  166 LATASFSYN-RLVLMDESLQLLPALESLNLS---------------HNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQL  227 (1096)
T ss_pred             Hhhhhcchh-hHHhHHHHHHHHHHhhhhccc---------------hhhhhhhH-HHHhcccccccccccch-hcccccc
Confidence            334444433 344333333346778888888               44555544 56688999999999865 3333221


Q ss_pred             CCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754          167 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       167 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                      .   ... .+|+.|.++++ .++.+..   +.++.+|+.||+++| .+.+..++.        .+..+..|+.|.+.|++
T Consensus       228 ~---~~g-c~L~~L~lrnN-~l~tL~g---ie~LksL~~LDlsyN-ll~~hseL~--------pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  228 S---MVG-CKLQLLNLRNN-ALTTLRG---IENLKSLYGLDLSYN-LLSEHSELE--------PLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             c---hhh-hhheeeeeccc-HHHhhhh---HHhhhhhhccchhHh-hhhcchhhh--------HHHHHHHHHHHhhcCCc
Confidence            1   122 34999999988 4555433   789999999999998 455544443        45567778888887764


Q ss_pred             c
Q 009754          247 K  247 (526)
Q Consensus       247 ~  247 (526)
                      -
T Consensus       291 l  291 (1096)
T KOG1859|consen  291 L  291 (1096)
T ss_pred             c
Confidence            3

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.63  E-value=0.0024  Score=41.82  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=24.1

Q ss_pred             CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhc
Q 009754          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVL  218 (526)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~  218 (526)
                      ++|++|+++++ .++++++.  ++++++|+.|++++| .+++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCCc
Confidence            36777777776 45555432  677777777777777 455443

...

>PLN03150 hypothetical protein; Provisional

Probab=96.60  E-value=0.0038  Score=66.97  Aligned_cols=101  Identities=16%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             HHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccch
Q 009754          137 QKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEE  216 (526)
Q Consensus       137 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~  216 (526)
                      ..++..+..+++|+.|+++++.-...++...    ..+++|+.|++++|.....+ |.. ++++++|++|++++|.....
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N~lsg~i-P~~-l~~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYNSFNGSI-PES-LGQLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCCCCCCCC-chH-HhcCCCCCEEECcCCccccc
Confidence            4566677888999999999876222333222    56889999999998543343 443 78999999999999865556


Q ss_pred             hccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754          217 VLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (526)
Q Consensus       217 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  252 (526)
                      +|...         ...+.++..+++.++..+...+
T Consensus       506 iP~~l---------~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        506 VPAAL---------GGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CChHH---------hhccccCceEEecCCccccCCC
Confidence            65411         1123466788888877766543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.54  E-value=0.00051  Score=65.03  Aligned_cols=250  Identities=17%  Similarity=0.102  Sum_probs=110.9

Q ss_pred             cceeEEeeccCceeec-----ccccCCcCCCceEEeccccccc----Eeccccccccccccccccccceeeecccccccc
Q 009754            4 LLFYFFNIHTHAHTFA-----YFQVGIPSSLVNLNVSRCDKIE----EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTS   74 (526)
Q Consensus         4 ~~l~~l~~~~~~~~~~-----~~~~~~l~~L~~L~L~~c~~l~----~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   74 (526)
                      ..+..+++++.+--..     -..+..-++|+.-+++.. ...    .+|....- ........++|++|+|++...=..
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~-l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKM-LSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHH-HHHHHhcCCceeEeeccccccCcc
Confidence            3455555555442111     124555667777777763 222    23322110 111222456788888776432111


Q ss_pred             ccc--cCceecCCCccEEEecCCCCcccc--------------ccCcccCCCeeeEEecccccccceeeeccccchhhHH
Q 009754           75 FCL--ENYTLEFPSLERVSMTHCPNMKTF--------------SHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQK  138 (526)
Q Consensus        75 ~~~--~~~~~~~~~L~~L~l~~c~~l~~l--------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  138 (526)
                      ...  .....++..|++|.+.+|. +...              ...+...++|+.+.....       ..+   +..-..
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-------rle---n~ga~~  176 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-------RLE---NGGATA  176 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-------ccc---cccHHH
Confidence            111  1113347788888888874 2211              111223455666655410       000   011122


Q ss_pred             hhhhhcCCCCCcEEEeecCCCCceecc-CCCCCcCCCCCccEEEEecCCCccc--CCChHHHhcCCCCCeeeeccccccc
Q 009754          139 CYEEMIGFRDMEYLQLSYFPHLKEIWH-GQALPVSFFNNLARLVVDDCTNMSS--AIPANLLRCLNNLQWLEVRNCDSIE  215 (526)
Q Consensus       139 l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~l~~l~~L~~L~l~~~~~l~  215 (526)
                      +-..++.++.|+.+.+..+. +..-.. ........+++|++|++.++.--..  ..-...+..+++|++|.+++|. ++
T Consensus       177 ~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~  254 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LE  254 (382)
T ss_pred             HHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cc
Confidence            33344455677777776654 111000 0000113467777777777642211  0011125566777777777773 33


Q ss_pred             hhccccccccccCCCCCCCCccceEecCCCccccccc-cCCCccccCCCcceEeeecC
Q 009754          216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQHLTIQNC  272 (526)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~L~~L~l~~c  272 (526)
                      .-....-...    .....|+|+.|.+.++..-.+-. .........|.|+.|.+.+|
T Consensus       255 ~~Ga~a~~~a----l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  255 NEGAIAFVDA----LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             cccHHHHHHH----HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            2110000000    11236777777777652211100 00001334677777777775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.0017  Score=60.20  Aligned_cols=20  Identities=25%  Similarity=0.200  Sum_probs=11.5

Q ss_pred             ccccccceeeccccccccee
Q 009754          426 NVFKELRYLELYCLPSLTSF  445 (526)
Q Consensus       426 ~~~~~L~~L~l~~c~~l~~~  445 (526)
                      ..||+|+.|.+.+.|-+..+
T Consensus       246 n~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  246 NGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             cCCchhheeeccCCcccccc
Confidence            34666666666666554433

>PLN03150 hypothetical protein; Provisional

Probab=96.18  E-value=0.0082  Score=64.45  Aligned_cols=62  Identities=18%  Similarity=0.157  Sum_probs=33.2

Q ss_pred             hhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          344 KAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       344 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      ..+++|+.|+++++.....+|..+..+++|+.|+++++.-...+|.  .+..+++|+.|+++++
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--SLGQLTSLRILNLNGN  500 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--HHhcCCCCCEEECcCC
Confidence            4556666666665543335555556666666666666432223332  2345566666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.09  E-value=0.0083  Score=39.26  Aligned_cols=39  Identities=18%  Similarity=0.089  Sum_probs=20.4

Q ss_pred             cceeEEeeccCceeecccc-cCCcCCCceEEecccccccEec
Q 009754            4 LLFYFFNIHTHAHTFAYFQ-VGIPSSLVNLNVSRCDKIEEII   44 (526)
Q Consensus         4 ~~l~~l~~~~~~~~~~~~~-~~~l~~L~~L~L~~c~~l~~l~   44 (526)
                      |+|++|+++...... +++ ++.+++|++|+++++ .+.+++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCC-CCCCCc
Confidence            355666666554443 444 666666666666664 455443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.0024  Score=59.32  Aligned_cols=85  Identities=21%  Similarity=0.299  Sum_probs=48.8

Q ss_pred             CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCC-CCCCCCCEEeeccccCccccccchhhhhcc
Q 009754          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPS-WHLENLEALEVSKCHGLINLLTFSTSESLV  397 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (526)
                      +.++++++.+. .+.+ |.+.+....++|.|+.|+++.+ .+.+..... ....+|+.|-+.+. .+......+....+|
T Consensus        71 ~~v~elDL~~N-~iSd-WseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   71 TDVKELDLTGN-LISD-WSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLP  146 (418)
T ss_pred             hhhhhhhcccc-hhcc-HHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcch
Confidence            67777887763 2333 3344444577888888888643 343322222 24456777777662 333333333456677


Q ss_pred             CCceEEEecc
Q 009754          398 NLGRMMIADC  407 (526)
Q Consensus       398 ~L~~L~i~~c  407 (526)
                      .++.|+++..
T Consensus       147 ~vtelHmS~N  156 (418)
T KOG2982|consen  147 KVTELHMSDN  156 (418)
T ss_pred             hhhhhhhccc
Confidence            7788877764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.75  E-value=0.021  Score=50.27  Aligned_cols=88  Identities=27%  Similarity=0.339  Sum_probs=61.2

Q ss_pred             CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  252 (526)
                      .++.|.+|.+.++ +++.+ ...+...+|+|+.|.+.+| ++..+.++.        .+..+|+|++|.+-+.+. +...
T Consensus        62 ~l~rL~tLll~nN-rIt~I-~p~L~~~~p~l~~L~LtnN-si~~l~dl~--------pLa~~p~L~~Ltll~Npv-~~k~  129 (233)
T KOG1644|consen   62 HLPRLHTLLLNNN-RITRI-DPDLDTFLPNLKTLILTNN-SIQELGDLD--------PLASCPKLEYLTLLGNPV-EHKK  129 (233)
T ss_pred             CccccceEEecCC-cceee-ccchhhhccccceEEecCc-chhhhhhcc--------hhccCCccceeeecCCch-hccc
Confidence            4678888888877 45555 3344566788999999887 677777766        667789999998877543 2222


Q ss_pred             cCC-CccccCCCcceEeeecC
Q 009754          253 NFT-GNIIELPELQHLTIQNC  272 (526)
Q Consensus       253 ~~~-~~~~~~~~L~~L~l~~c  272 (526)
                      ... -.+..+|+|+.|+++..
T Consensus       130 ~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  130 NYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CceeEEEEecCcceEeehhhh
Confidence            111 12567899999998874

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.00031  Score=64.37  Aligned_cols=106  Identities=19%  Similarity=0.178  Sum_probs=67.8

Q ss_pred             CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccC
Q 009754          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVN  398 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~  398 (526)
                      .+.++|..++| .+.+|...     ..++.|+.|.++-+ +++.+ ..+..+++|++|+++. +.+.++-...++.++|+
T Consensus        19 ~~vkKLNcwg~-~L~DIsic-----~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDISIC-----EKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHhhhhcccCC-CccHHHHH-----HhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCch
Confidence            46678888886 45555332     67888888888764 45555 4567788888888887 56777766566788888


Q ss_pred             CceEEEecccCcceeeccCCcccccccccccccceeec
Q 009754          399 LGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLEL  436 (526)
Q Consensus       399 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  436 (526)
                      |+.|.+...+-...-+.   .-...-+..+|+|+.|+=
T Consensus        90 Lr~LWL~ENPCc~~ag~---nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQ---NYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hhhHhhccCCcccccch---hHHHHHHHHcccchhccC
Confidence            88888876553221111   001111245677777653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.34  E-value=0.0011  Score=68.67  Aligned_cols=104  Identities=22%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             CCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc-----CcccceeeecCCCCccccchhhhhh
Q 009754          230 RGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-----SNSVVHVTTDNKEPQKLTSEENFLL  304 (526)
Q Consensus       230 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~~~~~~~~~~  304 (526)
                      .+..++.|++|+++++ ++.+...    +..++.|++|++++ +.+...+     ...|+.|.++++...++-.+++   
T Consensus       182 SLqll~ale~LnLshN-k~~~v~~----Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~---  252 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHN-KFTKVDN----LRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIEN---  252 (1096)
T ss_pred             HHHHHHHhhhhccchh-hhhhhHH----HHhccccccccccc-chhccccccchhhhhheeeeecccHHHhhhhHHh---
Confidence            5566788999999885 4454432    67899999999998 5666655     3457788888888777665554   


Q ss_pred             ccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCc
Q 009754          305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS  358 (526)
Q Consensus       305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~  358 (526)
                                   +.+|+.|+++.. -+.....  +..++.+..|+.|.+.|++
T Consensus       253 -------------LksL~~LDlsyN-ll~~hse--L~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  253 -------------LKSLYGLDLSYN-LLSEHSE--LEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             -------------hhhhhccchhHh-hhhcchh--hhHHHHHHHHHHHhhcCCc
Confidence                         478899998862 1222111  1122677888888888876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.33  E-value=0.0053  Score=56.13  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=52.7

Q ss_pred             CCCCccEEEEecC--CCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccc
Q 009754          173 FFNNLARLVVDDC--TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR  250 (526)
Q Consensus       173 ~l~~L~~L~l~~c--~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  250 (526)
                      .+++|++|.++.+  .....+...  ...+|+|+++.+++| ++..+..+.        .+..+.+|..|++.+|.... 
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N-ki~~lstl~--------pl~~l~nL~~Ldl~n~~~~~-  130 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN-KIKDLSTLR--------PLKELENLKSLDLFNCSVTN-  130 (260)
T ss_pred             CcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC-ccccccccc--------hhhhhcchhhhhcccCCccc-
Confidence            4778888888877  333333222  556688888888887 444433322        45566777778877775432 


Q ss_pred             cccC-CCccccCCCcceEeeecCC
Q 009754          251 FCNF-TGNIIELPELQHLTIQNCP  273 (526)
Q Consensus       251 ~~~~-~~~~~~~~~L~~L~l~~c~  273 (526)
                      .... ...+..+|+|+.|+-.++.
T Consensus       131 l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  131 LDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             cccHHHHHHHHhhhhccccccccC
Confidence            2111 1124556777777766653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.00061  Score=62.51  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      +.+.++|+.++| .+.++   .+...|+.|++|.|+-| .++.+.           .+..+++|+.|.+..+ .+.++..
T Consensus        18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~-----------pl~rCtrLkElYLRkN-~I~sldE   80 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLA-----------PLQRCTRLKELYLRKN-CIESLDE   80 (388)
T ss_pred             HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccch-----------hHHHHHHHHHHHHHhc-ccccHHH
Confidence            345555555555 23322   23555666666666554 333332           2234555665555442 2333322


Q ss_pred             CCCccccCCCcceEeeecCCC
Q 009754          254 FTGNIIELPELQHLTIQNCPD  274 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c~~  274 (526)
                      ..- ..++|+|+.|.+..++.
T Consensus        81 L~Y-LknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   81 LEY-LKNLPSLRTLWLDENPC  100 (388)
T ss_pred             HHH-HhcCchhhhHhhccCCc
Confidence            222 34556666666655443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.19  E-value=0.0016  Score=57.12  Aligned_cols=45  Identities=13%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             CCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcce
Q 009754          368 WHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQ  412 (526)
Q Consensus       368 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  412 (526)
                      ..+++++.|.+.+|..+.+...+.+..-.++|+.|+|++|+.+++
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            333444555555555444443332333344555555555554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.86  E-value=0.0044  Score=63.26  Aligned_cols=168  Identities=17%  Similarity=0.169  Sum_probs=80.5

Q ss_pred             ccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhH
Q 009754           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (526)
Q Consensus        58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  137 (526)
                      +.+|+.|.+.+. .++.....  ...+++|++|+++++ .++.+ .++..++.|+.|++.+               +.+.
T Consensus        94 ~~~l~~l~l~~n-~i~~i~~~--l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~---------------N~i~  153 (414)
T KOG0531|consen   94 LKSLEALDLYDN-KIEKIENL--LSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSG---------------NLIS  153 (414)
T ss_pred             ccceeeeecccc-chhhcccc--hhhhhcchheecccc-ccccc-cchhhccchhhheecc---------------Ccch
Confidence            556666665542 22222211  234677777777766 34444 3444556667777662               2332


Q ss_pred             HhhhhhcCCCCCcEEEeecCCCCceeccC-CCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccch
Q 009754          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHG-QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEE  216 (526)
Q Consensus       138 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~  216 (526)
                      .+.. +..+.+|+.++++++. +..+... .    ..+.+++.+.+.++... .+-.   +..+..+..+++..+ .+..
T Consensus       154 ~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~----~~~~~l~~l~l~~n~i~-~i~~---~~~~~~l~~~~l~~n-~i~~  222 (414)
T KOG0531|consen  154 DISG-LESLKSLKLLDLSYNR-IVDIENDEL----SELISLEELDLGGNSIR-EIEG---LDLLKKLVLLSLLDN-KISK  222 (414)
T ss_pred             hccC-CccchhhhcccCCcch-hhhhhhhhh----hhccchHHHhccCCchh-cccc---hHHHHHHHHhhcccc-ccee
Confidence            2221 1126677777777665 2222110 1    34667777777766322 2212   233333444444444 2222


Q ss_pred             hccccccccccCCCCCCCCc--cceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754          217 VLHLEEQNADKEHRGPLFPK--LYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN  271 (526)
Q Consensus       217 ~~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  271 (526)
                      +-           ....+..  |+.+.+.+.+ +...+  .+ +..+..+..|++.+
T Consensus       223 ~~-----------~l~~~~~~~L~~l~l~~n~-i~~~~--~~-~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  223 LE-----------GLNELVMLHLRELYLSGNR-ISRSP--EG-LENLKNLPVLDLSS  264 (414)
T ss_pred             cc-----------CcccchhHHHHHHhcccCc-ccccc--cc-ccccccccccchhh
Confidence            21           1122232  6777777643 23221  11 44666777777766

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.25  E-value=0.0047  Score=54.27  Aligned_cols=47  Identities=19%  Similarity=0.207  Sum_probs=22.4

Q ss_pred             CCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc
Q 009754          232 PLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI  279 (526)
Q Consensus       232 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  279 (526)
                      ..+++++.|.+-+|..+.++....- ..-.++|+.|++++|+++++-.
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~G  168 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGG  168 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhH
Confidence            3444555555555554444432211 1234556666666665555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.10  E-value=0.024  Score=51.94  Aligned_cols=86  Identities=23%  Similarity=0.260  Sum_probs=59.9

Q ss_pred             CCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc--cccchhccccccccccCCCCCCCCccceEecCCCcccc
Q 009754          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC--DSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK  249 (526)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  249 (526)
                      ..+.+|+.|++.++. ++.+..   +..+|+|++|.++.+  +....+..          ....+|+|+++.+++. .+.
T Consensus        40 d~~~~le~ls~~n~g-ltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~v----------l~e~~P~l~~l~ls~N-ki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVG-LTTLTN---FPKLPKLKKLELSDNYRRVSGGLEV----------LAEKAPNLKVLNLSGN-KIK  104 (260)
T ss_pred             ccccchhhhhhhccc-eeeccc---CCCcchhhhhcccCCccccccccee----------hhhhCCceeEEeecCC-ccc
Confidence            346777777777763 443323   678899999999988  44444332          3445699999999985 455


Q ss_pred             ccccCCCccccCCCcceEeeecCC
Q 009754          250 RFCNFTGNIIELPELQHLTIQNCP  273 (526)
Q Consensus       250 ~~~~~~~~~~~~~~L~~L~l~~c~  273 (526)
                      .+..... ...+++|..|++.+|.
T Consensus       105 ~lstl~p-l~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  105 DLSTLRP-LKELENLKSLDLFNCS  127 (260)
T ss_pred             cccccch-hhhhcchhhhhcccCC
Confidence            4444444 6788899999999985

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.88  E-value=0.081  Score=28.68  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=17.0

Q ss_pred             CCceEEecccccccEecccccc
Q 009754           28 SLVNLNVSRCDKIEEIIRHVGE   49 (526)
Q Consensus        28 ~L~~L~L~~c~~l~~l~~~~~~   49 (526)
                      +|++|||++| .++.+|..+++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            5899999998 78899886543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.33  E-value=0.09  Score=26.46  Aligned_cols=17  Identities=18%  Similarity=0.360  Sum_probs=10.3

Q ss_pred             CCCceEEecccccccEec
Q 009754           27 SSLVNLNVSRCDKIEEII   44 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~   44 (526)
                      ++|++|+|++| .++++|
T Consensus         1 ~~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCC-CCCCCc
Confidence            47888999887 477665

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.31  E-value=0.28  Score=43.39  Aligned_cols=87  Identities=18%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccc--cccccccccCceecCCCccEEEecCCCC
Q 009754           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYL--PTLTSFCLENYTLEFPSLERVSMTHCPN   97 (526)
Q Consensus        20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~L~~L~l~~c~~   97 (526)
                      +..+..++.|.+|.+.+ +.|..|...+..       .+++|.+|.+.+.  +.+.++..   ...||.|++|.+-+++-
T Consensus        57 l~~lp~l~rL~tLll~n-NrIt~I~p~L~~-------~~p~l~~L~LtnNsi~~l~dl~p---La~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNN-NRITRIDPDLDT-------FLPNLKTLILTNNSIQELGDLDP---LASCPKLEYLTLLGNPV  125 (233)
T ss_pred             cccCCCccccceEEecC-Ccceeeccchhh-------hccccceEEecCcchhhhhhcch---hccCCccceeeecCCch
Confidence            45566677777777777 467777555443       3567777777652  22333322   23577777777766653


Q ss_pred             ccc---cccCcccCCCeeeEEec
Q 009754           98 MKT---FSHGILSTPKLHKVQVT  117 (526)
Q Consensus        98 l~~---l~~~~~~~~~L~~L~l~  117 (526)
                      -..   -..-+..+++|+.|++.
T Consensus       126 ~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  126 EHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             hcccCceeEEEEecCcceEeehh
Confidence            221   11122345666666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.22  E-value=0.042  Score=56.11  Aligned_cols=107  Identities=20%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccc
Q 009754          141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL  220 (526)
Q Consensus       141 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~  220 (526)
                      +.+..+.+|+.+++.+.. ++.+....    ..+++|++|+++++ .++.+.+   +..++.|+.|++++| .+..+.. 
T Consensus        89 ~~l~~~~~l~~l~l~~n~-i~~i~~~l----~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N-~i~~~~~-  157 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNK-IEKIENLL----SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGN-LISDISG-  157 (414)
T ss_pred             cccccccceeeeeccccc-hhhcccch----hhhhcchheecccc-ccccccc---hhhccchhhheeccC-cchhccC-
Confidence            334455666666665544 32221111    34666777777666 3444433   556666777777666 4444432 


Q ss_pred             cccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754          221 EEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN  271 (526)
Q Consensus       221 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  271 (526)
                                ...++.|+.++++++. +..+... . ...+.+++.+.+.+
T Consensus       158 ----------~~~l~~L~~l~l~~n~-i~~ie~~-~-~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  158 ----------LESLKSLKLLDLSYNR-IVDIEND-E-LSELISLEELDLGG  195 (414)
T ss_pred             ----------CccchhhhcccCCcch-hhhhhhh-h-hhhccchHHHhccC
Confidence                      2235666666666642 2333210 0 13566666666666

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.52  E-value=4.9  Score=32.94  Aligned_cols=13  Identities=15%  Similarity=0.153  Sum_probs=4.3

Q ss_pred             HhcCCCCCeeeec
Q 009754          197 LRCLNNLQWLEVR  209 (526)
Q Consensus       197 l~~l~~L~~L~l~  209 (526)
                      +..+++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~   20 (129)
T PF13306_consen    8 FYNCSNLESITFP   20 (129)
T ss_dssp             TTT-TT--EEEET
T ss_pred             HhCCCCCCEEEEC
Confidence            3444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=87.38  E-value=0.068  Score=44.16  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                      ...|++.+++++ .++.+ |..+...+|.++.|+++++ .+.++|+          .+..++.|+.|+++.++
T Consensus        52 ~~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPe----------E~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   52 GYELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANN-EISDVPE----------ELAAMPALRSLNLRFNP  111 (177)
T ss_pred             CceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchh-hhhhchH----------HHhhhHHhhhcccccCc
Confidence            456777788776 45554 5665667778888888776 6777775          45667888888887754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=84.79  E-value=5.6  Score=32.54  Aligned_cols=78  Identities=13%  Similarity=0.177  Sum_probs=33.0

Q ss_pred             CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhc
Q 009754          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESL  396 (526)
Q Consensus       318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l  396 (526)
                      +++|+.+.+..  .++.+....+   ..+++|+.+.+.+  .+..++. .+..+++++.+.+.+  .+..++.. ....+
T Consensus        11 ~~~l~~i~~~~--~~~~I~~~~F---~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~-~F~~~   80 (129)
T PF13306_consen   11 CSNLESITFPN--TIKKIGENAF---SNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDN-AFSNC   80 (129)
T ss_dssp             -TT--EEEETS--T--EE-TTTT---TT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TT-TTTT-
T ss_pred             CCCCCEEEECC--CeeEeChhhc---ccccccccccccc--cccccceeeeecccccccccccc--cccccccc-ccccc
Confidence            35666666653  3555655544   5555666666654  2444432 234444666666644  33333332 22445


Q ss_pred             cCCceEEEe
Q 009754          397 VNLGRMMIA  405 (526)
Q Consensus       397 ~~L~~L~i~  405 (526)
                      ++|+.+.+.
T Consensus        81 ~~l~~i~~~   89 (129)
T PF13306_consen   81 TNLKNIDIP   89 (129)
T ss_dssp             TTECEEEET
T ss_pred             ccccccccC
Confidence            566666653

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.14  E-value=0.58  Score=26.46  Aligned_cols=17  Identities=18%  Similarity=0.526  Sum_probs=13.0

Q ss_pred             CCCccEEEEcCCCCcee
Q 009754          454 FPSLKQVVVRQCPKMKI  470 (526)
Q Consensus       454 ~~~L~~L~l~~C~~l~~  470 (526)
                      ||+|++|++.+|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            57788888888887763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=83.67  E-value=0.077  Score=43.85  Aligned_cols=58  Identities=21%  Similarity=0.385  Sum_probs=39.2

Q ss_pred             CCccEEEecCCCCccccccCccc-CCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCC
Q 009754           85 PSLERVSMTHCPNMKTFSHGILS-TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP  158 (526)
Q Consensus        85 ~~L~~L~l~~c~~l~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  158 (526)
                      ..|...+++++ .++++|..+.. .+.++.+++.               ++.+.++|..+..++.|+.|+++.++
T Consensus        53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~---------------~neisdvPeE~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLA---------------NNEISDVPEELAAMPALRSLNLRFNP  111 (177)
T ss_pred             ceEEEEecccc-hhhhCCHHHhhccchhhhhhcc---------------hhhhhhchHHHhhhHHhhhcccccCc
Confidence            34555566666 46666655543 3467777776               67777888777778888888887766

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=82.01  E-value=0.29  Score=45.37  Aligned_cols=60  Identities=15%  Similarity=0.107  Sum_probs=34.7

Q ss_pred             cccceeEeccCcCcc----c-cCCCCCCCCCCCEEeeccccCccccccch---hhhhccCCceEEEecc
Q 009754          347 ANLESLEISECSKLQ----K-LVPPSWHLENLEALEVSKCHGLINLLTFS---TSESLVNLGRMMIADC  407 (526)
Q Consensus       347 ~~L~~L~l~~c~~l~----~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~l~~L~~L~i~~c  407 (526)
                      ..|+.+.+..+..-.    . +...+.++++|+.||+... .++......   ..+.++.|+.|.+.+|
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccch
Confidence            467777776543111    1 1134567788888888873 333332211   2245667888888888

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	526
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 85/558 (15%), Positives = 164/558 (29%), Gaps = 171/558 (30%)

Query: 33  NVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEF--PSLERV 90
            VS   ++   +    EE  +    F + +VL ++Y      F +     E   PS+   
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQ---KFVE-EVLRINY-----KFLMSPIKTEQRQPSMMTR 110

Query: 91  SMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDME 150
                 + + ++          K  V+  +     + +       +++   E+   R  +
Sbjct: 111 MYIEQRD-RLYN----DNQVFAKYNVSRLQP----YLK-------LRQALLEL---RPAK 151

Query: 151 YLQLSYFPHLKEIWHG------QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL-NNL 203
            + +           G        +        A  V              +   +   +
Sbjct: 152 NVLI----------DGVLGSGKTWV--------ALDVCLS---------YKVQCKMDFKI 184

Query: 204 QWLEVRNCDSIEEVL-HLE----------EQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252
            WL ++NC+S E VL  L+             +D      L        L  L K K + 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 253 NFTGNIIELPELQHLTIQN-----CPDMET--------FISNSVVHVTTDNKEPQKLTSE 299
           N    ++ L  +Q+    N     C  + T        F+S +     + +     LT +
Sbjct: 245 N---CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 300 E------NFL---------LAHQVQPL----FDEKVSFPRLRWLELSGLHKVQHLWK--E 338
           E       +L               P       E +      W          + WK   
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW---------DN-WKHVN 351

Query: 339 NDESNKAF-ANLESLEISECSKL-QKL--------VPPS-----WH--LENLEALEVSKC 381
            D+      ++L  LE +E  K+  +L        +P       W   +++   + V+K 
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 382 HGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVF---KEL--RY--L 434
           H            SLV          +    I  + +  + K  N +   + +   Y   
Sbjct: 412 H----------KYSLVEKQP-----KESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 435 ELYCLPSLTSFCLGNYALEFPS--LKQVVVRQCPKMKIFSQGVLDTPML-NKVNVTEEEK 491
           + +    L    L  Y        LK   +    +M +F    LD   L  K+       
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQKI-----RH 509

Query: 492 DDDEGCWEGNLNDTIKKL 509
           D       G++ +T+++L
Sbjct: 510 DSTAWNASGSILNTLQQL 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 69/457 (15%), Positives = 132/457 (28%), Gaps = 152/457 (33%)

Query: 32  LNVSRCDKIEEI------------------------IRHVGEEAKE--NRIAFSKLKV-- 63
           LN+  C+  E +                        I+      +    R+  SK     
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 64  -LILD---YLPTLTSF---C--------------LENYTLEFPSLE--RVSMTH------ 94
            L+L          +F   C              L   T    SL+   +++T       
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 95  ---CPNMKTFS--HGILSTPKLHKVQVTEKEEGELHHWEG------NKLNSTIQKCYE-- 141
                + +       +L+T       + E     L  W+       +KL + I+      
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLN 201
           E   +R M + +LS FP                               + IP  LL  + 
Sbjct: 367 EPAEYRKM-FDRLSVFP------------------------PS-----AHIPTILLSLI- 395

Query: 202 NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL 261
              W      D I+          +K H+           L++    K+    T   I +
Sbjct: 396 ---W-----FDVIKSD---VMVVVNKLHK---------YSLVE----KQPKEST---ISI 428

Query: 262 PELQHLTIQNCPDM----ETFISNSVVHVTTDNKEPQKLTSEE---NFLLAHQVQPLFDE 314
           P +         +      + + +  +  T D+ +      ++   + +  H       E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 315 KVS-FPR----LRWLELSGLHKVQH---LWKENDESNKAFANLESLE--ISE-CSKLQKL 363
           +++ F       R+LE     K++H    W  +         L+  +  I +   K ++L
Sbjct: 489 RMTLFRMVFLDFRFLE----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 364 VPPSWH-LENLEA-LEVSKCHGLINLLTFSTSESLVN 398
           V      L  +E  L  SK   L+ +   +  E++  
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 42/329 (12%), Positives = 98/329 (29%), Gaps = 51/329 (15%)

Query: 167 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC----DSIEEVLHLEE 222
             L  +  ++L  L +D C+  ++    +++     ++ L +          + +  L +
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNS 282
            N   E       +   +   DL  + R C           L  + + +   +       
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNC---------RSLVSVKVGDFEIL------- 233

Query: 283 VVHVTTDNKEPQKLTS--EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEND 340
                      +   +  E      ++   + ++ ++    R L   GL  +        
Sbjct: 234 -----ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM------GP 282

Query: 341 ESNKAFA----NLESLEISECSKL-QKLVPPSWHLENLEALEVSKCHGLINLLTFSTSES 395
                       +  L++       +          NLE LE     G   L     ++ 
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL--AQY 340

Query: 396 LVNLGRMMIADCKMIE--QIIQLQVGEE-----AKDCNVFKELRYLELYCLPSLTSFCLG 448
              L R+ I      +  +  +  V +      A+ C   +EL Y+ +Y    +T+  L 
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC---QELEYMAVYV-SDITNESLE 396

Query: 449 NYALEFPSLKQVVVRQCPKMKIFSQGVLD 477
           +      +L    +    + +  +   LD
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLD 425

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 54/473 (11%), Positives = 134/473 (28%), Gaps = 96/473 (20%)

Query: 27  SSLVNLNVSRCDKI-EEIIRHVGEEAKENRIAFSKLKVLILDY--LPTLTSFCLENYTLE 83
            +   L +S C+    + +  +             LK L L    +  ++   L ++   
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAA-------TCRNLKELDLRESDVDDVSGHWLSHFPDT 182

Query: 84  FPSLERVSMTHCPNMKTFSHGILS----TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC 139
           + SL  ++++   +  +FS  +       P L  +++                   ++K 
Sbjct: 183 YTSLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNR--------------AVPLEKL 227

Query: 140 YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRC 199
              +     +E L    +           L V+         +    +   A    +   
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 200 LNNLQWLEVRNCDSIE-------------EVLHLEEQNADK--EHRGPLFPKLYGLRLID 244
            + L  L +                    + L + +   D   E        L  LR+  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 245 LPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL 304
                   N       L  +       CP +E+ +              +++T+     +
Sbjct: 348 SEPFVMEPNVALTEQGLVSV----SMGCPKLESVLYFC-----------RQMTNAALITI 392

Query: 305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFA-------NLESLEISEC 357
           A           + P +    L  +      +   +  +  F        +L  L +S  
Sbjct: 393 AR----------NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL 442

Query: 358 SKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ 417
              +       + + +E L V+            +   + ++       C  + ++    
Sbjct: 443 LTDKVFEYIGTYAKKMEMLSVAFAG--------DSDLGMHHVLS----GCDSLRKL---- 486

Query: 418 VGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKI 470
              E +DC    +        L ++ S  + + ++ F + K  + ++ PK+ +
Sbjct: 487 ---EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL-LGQKMPKLNV 535

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 49/311 (15%), Positives = 93/311 (29%), Gaps = 43/311 (13%)

Query: 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPL 233
           F N   LV+  C   S+   A +     NL+ L++R  D  +   H         H    
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH------WLSHFPDT 182

Query: 234 FPKLYGLRLIDLPKLKRFCNFTGNIIE-----LPELQHLTIQNCPDMETFISNSVVHVTT 288
           +  L  L +  L         + + +E      P L+ L +     +E   +        
Sbjct: 183 YTSLVSLNISCL-----ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL------ 231

Query: 289 DNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFA- 347
             +   +L          +V+P     +S       EL  L      W        A   
Sbjct: 232 --QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS---GFWDAVPAYLPAVYS 286

Query: 348 ---NLESLEISECSKL-QKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMM 403
               L +L +S  +     LV        L+ L V        L     + +  +L  + 
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL--ASTCKDLRELR 344

Query: 404 IADCKMIEQIIQLQVGEE-----AKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLK 458
           +   +       + + E+     +  C    +L  +  +C   +T+  L   A   P++ 
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSVSMGC---PKLESVLYFC-RQMTNAALITIARNRPNMT 400

Query: 459 QVVVRQCPKMK 469
           +  +       
Sbjct: 401 RFRLCIIEPKA 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	526
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.67
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.66
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.61
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.57
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.5
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.46
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.45
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.43
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.36
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.35
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.25
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.22
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.21
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.02
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.0
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.98
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.97
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.94
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.91
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.91
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.89
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.88
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.83
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.25
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.94
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.87
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.87
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.61
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.6
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.27

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=3.1e-28  Score=266.36  Aligned_cols=232  Identities=15%  Similarity=-0.025  Sum_probs=109.4

Q ss_pred             hhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCC-CCCeeeeccccccchh
Q 009754          139 CYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLN-NLQWLEVRNCDSIEEV  217 (526)
Q Consensus       139 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~  217 (526)
                      ++..+..+++|++|+++++.-...++...   ...+++|++|++++|.....+ |.. +..++ +|++|++++|.....+
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L~Ls~n~l~~~~-p~~-l~~l~~~L~~L~Ls~N~l~~~~  384 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGEL-PES-LTNLSASLLTLDLSSNNFSGPI  384 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHH---HTTCTTCCEEECCSSEEEECC-CTT-HHHHTTTCSEEECCSSEEEEEC
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHH---HhcCCCCCEEeCcCCccCccc-cHH-HHhhhcCCcEEEccCCCcCCCc
Confidence            33445555666666666554111211110   123556666666665322222 222 34444 5666666665333222


Q ss_pred             ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc------CcccceeeecCC
Q 009754          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNK  291 (526)
Q Consensus       218 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~  291 (526)
                      +...        ....+++|+.|+++++.....++..   +..+++|++|++++| ++++..      ...++.++++++
T Consensus       385 ~~~~--------~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          385 LPNL--------CQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             CTTT--------TCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSS
T ss_pred             Chhh--------hhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCC
Confidence            2210        1112566777777766433233322   556677777777764 343222      245666666666


Q ss_pred             CCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCC
Q 009754          292 EPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE  371 (526)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~  371 (526)
                      ...+...              ...+.+++|+.|+++++.....++...    ..+++|+.|++++|.....+|.++..++
T Consensus       453 ~l~~~~p--------------~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          453 MLEGEIP--------------QELMYVKTLETLILDFNDLTGEIPSGL----SNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             CCCSCCC--------------GGGGGCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             cccCcCC--------------HHHcCCCCceEEEecCCcccCcCCHHH----hcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            5543111              112234555555555543222222222    4555555555555543334555555555


Q ss_pred             CCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      +|++|++++|.-...+|.  .+..+++|+.|++++|
T Consensus       515 ~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             TCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCC
Confidence            555555555433223332  2345555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.3e-27  Score=261.32  Aligned_cols=417  Identities=12%  Similarity=-0.000  Sum_probs=256.3

Q ss_pred             ccceeEEeeccCceeeccc---ccCCcCCCceEEecccccccEecccc-ccccccccccccccceeeecccccccccccc
Q 009754            3 FLLFYFFNIHTHAHTFAYF---QVGIPSSLVNLNVSRCDKIEEIIRHV-GEEAKENRIAFSKLKVLILDYLPTLTSFCLE   78 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~---~~~~l~~L~~L~L~~c~~l~~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   78 (526)
                      +++|++|+++.+...-.++   .++.+++|++|++++|.....+|..+ .+        +++|++|+++++. +++....
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n~-l~~~~~~  169 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK--------LNSLEVLDLSANS-ISGANVV  169 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCC--------CTTCSEEECCSSC-CEEETHH
T ss_pred             CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhcc--------CCCCCEEECCCCc-cCCcCCh
Confidence            5788888888776553333   57888888888888864333334433 22        5556666555432 1111110


Q ss_pred             C------------------------ceecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccch
Q 009754           79 N------------------------YTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNS  134 (526)
Q Consensus        79 ~------------------------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  134 (526)
                      .                        ....+++|++|++++|..-...|. +..+++|++|++++              +.
T Consensus       170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~--------------n~  234 (768)
T 3rgz_A          170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG--------------NK  234 (768)
T ss_dssp             HHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS--------------SC
T ss_pred             hhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC--------------Cc
Confidence            0                        012456666666666543333332 45566666666652              22


Q ss_pred             hhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeecccccc
Q 009754          135 TIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSI  214 (526)
Q Consensus       135 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l  214 (526)
                      ....++..+..+++|++|+++++.-...      .+...+++|++|++++|.....+ |..+...+++|++|++++|...
T Consensus       235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~i-p~~~~~~~~~L~~L~Ls~n~l~  307 (768)
T 3rgz_A          235 LSGDFSRAISTCTELKLLNISSNQFVGP------IPPLPLKSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFY  307 (768)
T ss_dssp             CCSCHHHHTTTCSSCCEEECCSSCCEES------CCCCCCTTCCEEECCSSEEEESC-CCCSCTTCTTCSEEECCSSEEE
T ss_pred             CCCcccHHHhcCCCCCEEECCCCcccCc------cCccccCCCCEEECcCCccCCcc-CHHHHhhcCcCCEEECcCCcCC
Confidence            2223455666777777777777652111      12134677777777777433233 3332333477777777777443


Q ss_pred             chhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcc-cc------Ccccceee
Q 009754          215 EEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMET-FI------SNSVVHVT  287 (526)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~------~~~L~~L~  287 (526)
                      ..++.          .++.+++|+.|+++++.....++..  .+..+++|++|++++| ++.+ .+      +.+++.++
T Consensus       308 ~~~p~----------~~~~l~~L~~L~L~~n~l~~~ip~~--~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~  374 (768)
T 3rgz_A          308 GAVPP----------FFGSCSLLESLALSSNNFSGELPMD--TLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLD  374 (768)
T ss_dssp             ECCCG----------GGGGCTTCCEEECCSSEEEEECCHH--HHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEE
T ss_pred             Cccch----------HHhcCCCccEEECCCCcccCcCCHH--HHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEE
Confidence            34443          3456777777777776432233221  1446777777777775 3432 22      12667777


Q ss_pred             ecCCCCccccchhhhhhccccccccccCC--CCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC
Q 009754          288 TDNKEPQKLTSEENFLLAHQVQPLFDEKV--SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP  365 (526)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  365 (526)
                      ++++...+..              +....  .+++|+.|+++++.....++...    ..+++|+.|++++|.....+|.
T Consensus       375 Ls~N~l~~~~--------------~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~~p~  436 (768)
T 3rgz_A          375 LSSNNFSGPI--------------LPNLCQNPKNTLQELYLQNNGFTGKIPPTL----SNCSELVSLHLSFNYLSGTIPS  436 (768)
T ss_dssp             CCSSEEEEEC--------------CTTTTCSTTCCCCEEECCSSEEEEECCGGG----GGCTTCCEEECCSSEEESCCCG
T ss_pred             ccCCCcCCCc--------------ChhhhhcccCCccEEECCCCccccccCHHH----hcCCCCCEEECcCCcccCcccH
Confidence            7766543211              01111  25789999998874333444333    7889999999998865556777


Q ss_pred             CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccccee
Q 009754          366 PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSF  445 (526)
Q Consensus       366 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  445 (526)
                      .+..+++|++|+++++.-...+|.  .+..+++|++|++++|.-...++.        ....+++|++|++++|.-...+
T Consensus       437 ~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~--------~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          437 SLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPS--------GLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCCSCC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCCH--------HHhcCCCCCEEEccCCccCCcC
Confidence            888889999999999754434443  346788999999988743222222        2245789999999998654567


Q ss_pred             cCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754          446 CLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD  493 (526)
Q Consensus       446 ~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~  493 (526)
                      |.....  +++|++|++++|.-...+|..+..+++|+.|+++.+.+.+
T Consensus       507 p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          507 PKWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CGGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ChHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            766655  8999999999987777888887788999999997766643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=1.6e-26  Score=247.31  Aligned_cols=353  Identities=12%  Similarity=0.100  Sum_probs=216.1

Q ss_pred             eecCCCccEEEecCCCCccc------------------cccCcc--cCCCeeeEEecccccccceeeeccccchhhHHhh
Q 009754           81 TLEFPSLERVSMTHCPNMKT------------------FSHGIL--STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY  140 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~  140 (526)
                      ...+++|++|+++++. ++.                  +|..+.  .+++|++|++++              +.....+|
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~--------------n~l~~~~p  266 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN--------------CPNLTKLP  266 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC--------------CTTCSSCC
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecC--------------CcCCccCh
Confidence            4457777777777775 454                  677766  777777777773              33334556


Q ss_pred             hhhcCCCCCcEEEeecCCCCce--eccCCC-C-CcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccch
Q 009754          141 EEMIGFRDMEYLQLSYFPHLKE--IWHGQA-L-PVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEE  216 (526)
Q Consensus       141 ~~~~~~~~L~~L~l~~~~~l~~--~~~~~~-~-~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~  216 (526)
                      ..+..+++|++|+++++..++.  ++.... + ....+++|++|++++|. ++.++..+.++.+++|++|++++|.....
T Consensus       267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~  345 (636)
T 4eco_A          267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGK  345 (636)
T ss_dssp             TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred             HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccc
Confidence            6666777777777777653331  221110 0 00123677777777773 44553322367777777777777633224


Q ss_pred             hccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCC-cceEeeecCCCCccccC-------cccceeee
Q 009754          217 VLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE-LQHLTIQNCPDMETFIS-------NSVVHVTT  288 (526)
Q Consensus       217 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~-------~~L~~L~i  288 (526)
                      +|           .++.+++|+.|+++++ .+..++..   +..+++ |++|+++++ +++.++.       ..++.+++
T Consensus       346 ip-----------~~~~l~~L~~L~L~~N-~l~~lp~~---l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~L  409 (636)
T 4eco_A          346 LP-----------AFGSEIKLASLNLAYN-QITEIPAN---FCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDF  409 (636)
T ss_dssp             CC-----------CCEEEEEESEEECCSS-EEEECCTT---SEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEEC
T ss_pred             hh-----------hhCCCCCCCEEECCCC-ccccccHh---hhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEEC
Confidence            44           2234567777777775 34444433   556676 777777774 4554441       14667777


Q ss_pred             cCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCC
Q 009754          289 DNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW  368 (526)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  368 (526)
                      +++.+.+.....       +.+.......+++|+.|+++++ .++.++...+   ..+++|+.|+++++. ++.+|....
T Consensus       410 s~N~l~~~~p~~-------l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~---~~l~~L~~L~Ls~N~-l~~i~~~~~  477 (636)
T 4eco_A          410 SYNEIGSVDGKN-------FDPLDPTPFKGINVSSINLSNN-QISKFPKELF---STGSPLSSINLMGNM-LTEIPKNSL  477 (636)
T ss_dssp             CSSCTTTTTTCS-------SCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHH---HTTCCCSEEECCSSC-CSBCCSSSS
T ss_pred             cCCcCCCcchhh-------hcccccccccCCCCCEEECcCC-ccCcCCHHHH---ccCCCCCEEECCCCC-CCCcCHHHh
Confidence            776654321100       0000011114568999999885 4555554332   457889999998874 557776543


Q ss_pred             CC--------CCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccc--
Q 009754          369 HL--------ENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYC--  438 (526)
Q Consensus       369 ~l--------~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--  438 (526)
                      ..        ++|++|+++++ .++.+|.......+++|++|+++++ .++.++.        ....+++|+.|++++  
T Consensus       478 ~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~--------~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          478 KDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT--------QPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             EETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC--------GGGGCSSCCEEECCSCB
T ss_pred             ccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcCh--------hhhcCCCCCEEECCCCc
Confidence            32        28999999985 5667765321137889999999886 3544433        123578899999854  


Q ss_pred             ----ccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754          439 ----LPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       439 ----c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~  492 (526)
                          +.-...+|.....  +++|++|++++|. ++.+|..+  .++|+.|+++++++.
T Consensus       548 ~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          548 DAQGNRTLREWPEGITL--CPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNPNI  600 (636)
T ss_dssp             CTTCCBCCCCCCTTGGG--CSSCCEEECCSSC-CCBCCSCC--CTTCCEEECCSCTTC
T ss_pred             ccccCcccccChHHHhc--CCCCCEEECCCCc-CCccCHhH--hCcCCEEECcCCCCc
Confidence                3334566666655  8999999998864 48888875  378999999777664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=3.5e-25  Score=236.29  Aligned_cols=273  Identities=16%  Similarity=0.126  Sum_probs=137.8

Q ss_pred             CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCC
Q 009754          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT  255 (526)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  255 (526)
                      +|++|+++++ .++.+ +...++.+++|++|++++| .++.+|.          .+..+++|+.|+++++. +...+.  
T Consensus       255 ~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~lp~----------~l~~l~~L~~L~l~~n~-l~~~~~--  318 (606)
T 3t6q_A          255 SVESINLQKH-YFFNI-SSNTFHCFSGLQELDLTAT-HLSELPS----------GLVGLSTLKKLVLSANK-FENLCQ--  318 (606)
T ss_dssp             EEEEEECTTC-CCSSC-CTTTTTTCTTCSEEECTTS-CCSCCCS----------SCCSCTTCCEEECTTCC-CSBGGG--
T ss_pred             ceeEEEeecC-ccCcc-CHHHhccccCCCEEeccCC-ccCCCCh----------hhcccccCCEEECccCC-cCcCch--
Confidence            5666666666 34444 3333677788888888877 5556554          45567788888887763 333311  


Q ss_pred             CccccCCCcceEeeecCCCCcccc------CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCC
Q 009754          256 GNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGL  329 (526)
Q Consensus       256 ~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  329 (526)
                      ..+..+++|++|++++|......+      ...++.++++++....+...            ......+++|+.|+++++
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC------------NLQLRNLSHLQSLNLSYN  386 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES------------TTTTTTCTTCCEEECCSC
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc------------chhcccCCCCCEEECCCC
Confidence            115677788888887763221222      34667777777665543210            112334566666666664


Q ss_pred             CCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754          330 HKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (526)
Q Consensus       330 ~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  408 (526)
                       .+..+....+   ..+++|+.|++++|......+. .+..+++|++|++++|. +...+.. .+..+++|++|+++++.
T Consensus       387 -~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          387 -EPLSLKTEAF---KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQ-LFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             -SCEEECTTTT---TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTT-TTTTCTTCCEEECTTCB
T ss_pred             -cCCcCCHHHh---cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHH-HHhCCCCCCEEECCCCC
Confidence             2444433322   4556666666665532222222 24555666666666642 3333222 23455666666666553


Q ss_pred             CcceeeccCCcccccccccccccceeecccccccceecC-CCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEee
Q 009754          409 MIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCL-GNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVT  487 (526)
Q Consensus       409 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~  487 (526)
                      --.....     .......+++|+.|++++| .++.++. ....  +++|++|++++|.-....|..+..+++| .++++
T Consensus       461 l~~~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          461 FPKGNIQ-----KTNSLQTLGRLEILVLSFC-DLSSIDQHAFTS--LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             CGGGEEC-----SSCGGGGCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred             CCccccc-----cchhhccCCCccEEECCCC-ccCccChhhhcc--ccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence            1110100     0001123455666666555 3444322 2222  5555555555543333333333344444 44444


Q ss_pred             ccCC
Q 009754          488 EEEK  491 (526)
Q Consensus       488 ~~~~  491 (526)
                      ++++
T Consensus       532 ~N~l  535 (606)
T 3t6q_A          532 SNHI  535 (606)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            4433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.1e-25  Score=240.34  Aligned_cols=160  Identities=16%  Similarity=0.134  Sum_probs=108.5

Q ss_pred             CCCCCCccEEEecCCCCceEecc-cCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccc-cccchh
Q 009754          315 KVSFPRLRWLELSGLHKVQHLWK-ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN-LLTFST  392 (526)
Q Consensus       315 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~  392 (526)
                      ...+++|+.|+++++. +..+.. ..+   ..+++|+.|++++|......|..+..+++|++|+++++. +.. ..+. .
T Consensus       395 ~~~l~~L~~L~l~~n~-l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~  468 (606)
T 3vq2_A          395 FMGLEELQHLDFQHST-LKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSN-V  468 (606)
T ss_dssp             CTTCTTCCEEECTTSE-EESTTTTTTT---TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECS-C
T ss_pred             ccCCCCCCeeECCCCc-cCCccChhhh---hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHH-h
Confidence            3456778888887753 333322 222   667888888888876555566677788888888888864 333 2221 3


Q ss_pred             hhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccccee-cCCCccCCCCCccEEEEcCCCCceec
Q 009754          393 SESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSF-CLGNYALEFPSLKQVVVRQCPKMKIF  471 (526)
Q Consensus       393 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~l~~C~~l~~l  471 (526)
                      +..+++|++|++++| .++.+..       .....+++|++|+++++ .++.+ +.....  +++|++|++++| +++.+
T Consensus       469 ~~~l~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~l~~N-~l~~~  536 (606)
T 3vq2_A          469 FANTTNLTFLDLSKC-QLEQISW-------GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQ--LYSLSTLDCSFN-RIETS  536 (606)
T ss_dssp             CTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECCSS-CCSCEEGGGTTT--CTTCCEEECTTS-CCCCE
T ss_pred             hccCCCCCEEECCCC-cCCccCh-------hhhcccccCCEEECCCC-cCCCcCHHHccC--CCcCCEEECCCC-cCccc
Confidence            467788888888887 4554432       11235789999999988 45554 444444  889999999886 57788


Q ss_pred             cCCCCCCC-CcceEEeeccCCC
Q 009754          472 SQGVLDTP-MLNKVNVTEEEKD  492 (526)
Q Consensus       472 p~~~~~~~-~L~~l~l~~~~~~  492 (526)
                      |..+..++ +|+.+++.++.+.
T Consensus       537 p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          537 KGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             ESCGGGSCTTCCEEECCSCCCC
T ss_pred             CHhHhhhcccCcEEEccCCCcc
Confidence            88766666 5999999777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=9.4e-25  Score=233.00  Aligned_cols=234  Identities=17%  Similarity=0.116  Sum_probs=147.8

Q ss_pred             CCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc------CcccceeeecCCCCccccchhhhhh
Q 009754          231 GPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNKEPQKLTSEENFLL  304 (526)
Q Consensus       231 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~~~~  304 (526)
                      ++.+++|+.|+++++ .++.+|..   +..+++|++|++++| ++...+      ...++.++++++......       
T Consensus       274 ~~~l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-------  341 (606)
T 3t6q_A          274 FHCFSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLEL-------  341 (606)
T ss_dssp             TTTCTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBC-------
T ss_pred             hccccCCCEEeccCC-ccCCCChh---hcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccccc-------
Confidence            444566666666664 34444333   445666666666664 343332      234556666555433100       


Q ss_pred             ccccccccccCCCCCCccEEEecCCCCceEec--ccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecccc
Q 009754          305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW--KENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH  382 (526)
Q Consensus       305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  382 (526)
                            .......+++|+.|+++++. ++.+.  ...+   ..+++|+.|++++|......+..+..+++|++|+++++ 
T Consensus       342 ------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-  410 (606)
T 3t6q_A          342 ------GTGCLENLENLRELDLSHDD-IETSDCCNLQL---RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-  410 (606)
T ss_dssp             ------CSSTTTTCTTCCEEECCSSC-CCEEEESTTTT---TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC-
T ss_pred             ------chhhhhccCcCCEEECCCCc-cccccCcchhc---ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC-
Confidence                  01123467899999998864 44442  1222   77889999999988644445667788899999999986 


Q ss_pred             CccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccc-eecCCCccCCCCCccEEE
Q 009754          383 GLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLT-SFCLGNYALEFPSLKQVV  461 (526)
Q Consensus       383 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~  461 (526)
                      .+........+..+++|++|++++|. ++....       .....+++|++|++++++--. .++.......+++|++|+
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-------TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             cCCCcccchhhhCcccCCEEECCCCc-cCCcCH-------HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence            44444333345788999999998874 332211       122457999999999985322 233221112489999999


Q ss_pred             EcCCCCceeccCCCCCCCCcceEEeeccCCCCCc
Q 009754          462 VRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDE  495 (526)
Q Consensus       462 l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~~~  495 (526)
                      +++|.-....|..+..+++|+.|+++++++....
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  516 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS  516 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence            9998555555777778999999999888776443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=2.3e-25  Score=242.89  Aligned_cols=348  Identities=11%  Similarity=0.056  Sum_probs=234.0

Q ss_pred             eecCCCccEEEecCCCCccc------------------cccCcc--cCCCeeeEEecccccccceeeeccccchhhHHhh
Q 009754           81 TLEFPSLERVSMTHCPNMKT------------------FSHGIL--STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY  140 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~  140 (526)
                      ...+++|+.|+++++. ++.                  +|..+.  .+++|++|++++              +.....+|
T Consensus       444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~--------------N~l~~~iP  508 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN--------------CPNMTQLP  508 (876)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES--------------CTTCCSCC
T ss_pred             HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcC--------------CCCCccCh
Confidence            4568888888888885 554                  777776  788888888873              33445566


Q ss_pred             hhhcCCCCCcEEEeecCCCCce--eccCCC-C--CcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccc
Q 009754          141 EEMIGFRDMEYLQLSYFPHLKE--IWHGQA-L--PVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE  215 (526)
Q Consensus       141 ~~~~~~~~L~~L~l~~~~~l~~--~~~~~~-~--~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~  215 (526)
                      ..+..+++|+.|+++++..++.  ++.... +  ....+++|++|++++|. ++.++....++.+++|++|++++|. +.
T Consensus       509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~  586 (876)
T 4ecn_A          509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VR  586 (876)
T ss_dssp             GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CC
T ss_pred             HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cc
Confidence            7777888888888888753331  221110 0  01245688888888874 4455441237888888888888873 44


Q ss_pred             hhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCC-cceEeeecCCCCccccC-------cccceee
Q 009754          216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE-LQHLTIQNCPDMETFIS-------NSVVHVT  287 (526)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~-------~~L~~L~  287 (526)
                      .+|           .++.+++|+.|+++++. +..++..   +..+++ |+.|++++| +++.++.       ..|+.|+
T Consensus       587 ~lp-----------~~~~L~~L~~L~Ls~N~-l~~lp~~---l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          587 HLE-----------AFGTNVKLTDLKLDYNQ-IEEIPED---FCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVD  650 (876)
T ss_dssp             BCC-----------CCCTTSEESEEECCSSC-CSCCCTT---SCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEE
T ss_pred             cch-----------hhcCCCcceEEECcCCc-cccchHH---HhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEE
Confidence            554           33567888888888864 4455443   557777 888888885 4655541       2377888


Q ss_pred             ecCCCCccccchhhhhhccccccccccCC--CCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC
Q 009754          288 TDNKEPQKLTSEENFLLAHQVQPLFDEKV--SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP  365 (526)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  365 (526)
                      ++++.+.+...           ..++..+  .+++|+.|+++++ .++.++...+   ..+++|+.|++++| .++.+|.
T Consensus       651 Ls~N~l~g~ip-----------~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~---~~l~~L~~L~Ls~N-~L~~ip~  714 (876)
T 4ecn_A          651 FSYNKIGSEGR-----------NISCSMDDYKGINASTVTLSYN-EIQKFPTELF---ATGSPISTIILSNN-LMTSIPE  714 (876)
T ss_dssp             CCSSCTTTTSS-----------SCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHH---HTTCCCSEEECCSC-CCSCCCT
T ss_pred             CcCCcCCCccc-----------cchhhhccccCCCcCEEEccCC-cCCccCHHHH---ccCCCCCEEECCCC-cCCccCh
Confidence            88877654211           0111122  3358999999886 4555554332   46789999999987 4667776


Q ss_pred             CCCCC--------CCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecc
Q 009754          366 PSWHL--------ENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELY  437 (526)
Q Consensus       366 ~~~~l--------~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  437 (526)
                      .+...        ++|+.|++++| .+..+|.......+++|+.|+++++ .++.++.        ....+++|+.|+++
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~--------~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT--------QPLNSSQLKAFGIR  784 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC--------GGGGCTTCCEEECC
T ss_pred             HHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch--------hhhcCCCCCEEECC
Confidence            55432        38999999996 6667765321137899999999887 4554432        12357899999997


Q ss_pred             ccc------ccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754          438 CLP------SLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       438 ~c~------~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~  492 (526)
                      +++      -...+|.....  +++|++|++++|. ++.+|..+  .++|+.|++++|++.
T Consensus       785 ~N~~ls~N~l~~~ip~~l~~--L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPTGITT--CPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNPNI  840 (876)
T ss_dssp             CCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC-CCBCCSCC--CSSSCEEECCSCTTC
T ss_pred             CCCCcccccccccChHHHhc--CCCCCEEECCCCC-CCccCHhh--cCCCCEEECCCCCCC
Confidence            733      34556666555  8999999999875 48899875  379999999877764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=2.2e-25  Score=237.88  Aligned_cols=427  Identities=14%  Similarity=0.086  Sum_probs=216.2

Q ss_pred             ccceeEEeeccCceeeccc-ccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCc
Q 009754            3 FLLFYFFNIHTHAHTFAYF-QVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY   80 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (526)
                      +++|++|+++.+......+ .++.+++|++|+++++ .+..+ |..+++        +++|++|+++++. ++...... 
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~--------l~~L~~L~L~~n~-l~~~~~~~-  123 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSG--------LTSLENLVAVETK-LASLESFP-  123 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTT--------CTTCCEEECTTSC-CCCSSSSC-
T ss_pred             CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCC--------cccCCEEEccCCc-cccccccc-
Confidence            5789999999886555433 6889999999999997 67777 666766        8899999999764 44444332 


Q ss_pred             eecCCCccEEEecCCCCcc-ccccCcccCCCeeeEEeccccccc-----------------ceeeeccccchhhHHhhhh
Q 009754           81 TLEFPSLERVSMTHCPNMK-TFSHGILSTPKLHKVQVTEKEEGE-----------------LHHWEGNKLNSTIQKCYEE  142 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~  142 (526)
                      ...+++|++|++++|..-. .+|..+..+++|++|+++++.-..                 .+...+    +.+..++..
T Consensus       124 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~----n~l~~~~~~  199 (606)
T 3vq2_A          124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL----NPIDFIQDQ  199 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT----CCCCEECTT
T ss_pred             cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC----CCcceeCcc
Confidence            4578999999999985333 467778889999999998642110                 111111    112222222


Q ss_pred             hcCCCCCcEEEeecCCCCce-e--ccCC---------------------CCCcCCC-----CCccEEEEecCCCcccCCC
Q 009754          143 MIGFRDMEYLQLSYFPHLKE-I--WHGQ---------------------ALPVSFF-----NNLARLVVDDCTNMSSAIP  193 (526)
Q Consensus       143 ~~~~~~L~~L~l~~~~~l~~-~--~~~~---------------------~~~~~~l-----~~L~~L~l~~c~~l~~~~~  193 (526)
                      .....+|+.|+++++.-... .  +...                     .+....+     -+++.+.+..+..+....+
T Consensus       200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~  279 (606)
T 3vq2_A          200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV  279 (606)
T ss_dssp             TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred             cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence            22333566666655431100 0  0000                     0000000     0122222212222222212


Q ss_pred             hHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCC
Q 009754          194 ANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCP  273 (526)
Q Consensus       194 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  273 (526)
                      .  +..+++|+.|+++++ .+..++           ....+++|+.|+++++.. +.++.    + .+++|++|++++|.
T Consensus       280 ~--~~~l~~L~~L~l~~~-~~~~l~-----------~l~~~~~L~~L~l~~n~l-~~lp~----~-~l~~L~~L~l~~n~  339 (606)
T 3vq2_A          280 K--FHCLANVSAMSLAGV-SIKYLE-----------DVPKHFKWQSLSIIRCQL-KQFPT----L-DLPFLKSLTLTMNK  339 (606)
T ss_dssp             S--CGGGTTCSEEEEESC-CCCCCC-----------CCCTTCCCSEEEEESCCC-SSCCC----C-CCSSCCEEEEESCS
T ss_pred             c--cccCCCCCEEEecCc-cchhhh-----------hccccccCCEEEcccccC-ccccc----C-CCCccceeeccCCc
Confidence            2  445555555555555 233332           123345555555555533 44331    2 45555555555543


Q ss_pred             CCcccc---CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccc
Q 009754          274 DMETFI---SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLE  350 (526)
Q Consensus       274 ~l~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~  350 (526)
                      .+....   ...++.++++++.+.......            .....+++|+.|+++++. ++.++...    ..+++|+
T Consensus       340 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~------------~~~~~~~~L~~L~L~~n~-l~~~~~~~----~~l~~L~  402 (606)
T 3vq2_A          340 GSISFKKVALPSLSYLDLSRNALSFSGCCS------------YSDLGTNSLRHLDLSFNG-AIIMSANF----MGLEELQ  402 (606)
T ss_dssp             SCEECCCCCCTTCCEEECCSSCEEEEEECC------------HHHHCCSCCCEEECCSCS-EEEECCCC----TTCTTCC
T ss_pred             CccchhhccCCCCCEEECcCCccCCCcchh------------hhhccCCcccEeECCCCc-cccchhhc----cCCCCCC
Confidence            332222   234555555555443321100            011234566666666543 44444322    5556666


Q ss_pred             eeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccccccccccc
Q 009754          351 SLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFK  429 (526)
Q Consensus       351 ~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~  429 (526)
                      .|++++|......+ ..+..+++|++|++++|. +....+. .+..+++|++|++++|.-...+..       .....++
T Consensus       403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~  473 (606)
T 3vq2_A          403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLS-------NVFANTT  473 (606)
T ss_dssp             EEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCEEGGGEEC-------SCCTTCT
T ss_pred             eeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchh-hhcCCCCCCEEECCCCcCCCcchH-------HhhccCC
Confidence            66666654222222 345556666666666653 3332221 234556666666665531111111       0112356


Q ss_pred             ccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754          430 ELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       430 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~  492 (526)
                      +|+.|++++| .++.++..... .+++|++|++++|.-....|..+..+++|+.|+++++++.
T Consensus       474 ~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          474 NLTFLDLSKC-QLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             TCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCEEECCCC-cCCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            6666666665 34444322211 2566666666665433334555555666666666555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.6e-24  Score=229.55  Aligned_cols=249  Identities=18%  Similarity=0.164  Sum_probs=160.2

Q ss_pred             HhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCc
Q 009754          197 LRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDME  276 (526)
Q Consensus       197 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~  276 (526)
                      +..+++|++|++++| .+..++.          ....+ +|+.|+++++. +..++.     ..+++|+.|++.++....
T Consensus       278 ~~~l~~L~~L~l~~~-~l~~l~~----------~~~~~-~L~~L~l~~n~-~~~l~~-----~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          278 FNCLTNVSSFSLVSV-TIERVKD----------FSYNF-GWQHLELVNCK-FGQFPT-----LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             TGGGTTCSEEEEESC-EECSCCB----------CCSCC-CCSEEEEESCB-CSSCCB-----CBCSSCCEEEEESCBSCC
T ss_pred             hcCcCcccEEEecCc-cchhhhh----------hhccC-CccEEeeccCc-ccccCc-----ccccccCEEeCcCCcccc
Confidence            455666666666666 3444443          23344 66777776653 333332     256777777777654222


Q ss_pred             ccc---CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeE
Q 009754          277 TFI---SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLE  353 (526)
Q Consensus       277 ~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~  353 (526)
                      ..+   ...++.++++++.........            .....+++|+.|+++++ .+..++...    ..+++|+.|+
T Consensus       340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~------------~~~~~~~~L~~L~l~~n-~l~~~~~~~----~~l~~L~~L~  402 (570)
T 2z63_A          340 AFSEVDLPSLEFLDLSRNGLSFKGCCS------------QSDFGTTSLKYLDLSFN-GVITMSSNF----LGLEQLEHLD  402 (570)
T ss_dssp             BCCCCBCTTCCEEECCSSCCBEEEEEE------------HHHHTCSCCCEEECCSC-SEEEEEEEE----ETCTTCCEEE
T ss_pred             ccccccCCCCCEEeCcCCccCcccccc------------ccccccCccCEEECCCC-ccccccccc----cccCCCCEEE
Confidence            221   356677777776655432100            11235689999999886 455555443    7789999999


Q ss_pred             eccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCc-ceeeccCCccccccccccccc
Q 009754          354 ISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI-EQIIQLQVGEEAKDCNVFKEL  431 (526)
Q Consensus       354 l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~~~~~~~~~~~L  431 (526)
                      +++|......+ ..+..+++|++|++++|. +...+.. .+..+++|++|++++|.-. ..++.        ....+++|
T Consensus       403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~--------~~~~l~~L  472 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD--------IFTELRNL  472 (570)
T ss_dssp             CTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCEEGGGEECS--------CCTTCTTC
T ss_pred             ccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchh-hhhcCCcCcEEECcCCcCccccchh--------hhhcccCC
Confidence            99875333333 357788999999999974 4444332 3477899999999998532 12322        22458999


Q ss_pred             ceeeccccccccee-cCCCccCCCCCccEEEEcCCCCceecc-CCCCCCCCcceEEeeccCCCCC
Q 009754          432 RYLELYCLPSLTSF-CLGNYALEFPSLKQVVVRQCPKMKIFS-QGVLDTPMLNKVNVTEEEKDDD  494 (526)
Q Consensus       432 ~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~l~~C~~l~~lp-~~~~~~~~L~~l~l~~~~~~~~  494 (526)
                      +.|++++| .++.+ +.....  +++|++|++++| +++.+| ..+..+++|+.++++++.+...
T Consensus       473 ~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          473 TFLDLSQC-QLEQLSPTAFNS--LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CEEECTTS-CCCEECTTTTTT--CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CEEECCCC-ccccCChhhhhc--ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            99999998 56666 444444  899999999987 555555 4566789999999987776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=2.6e-25  Score=237.77  Aligned_cols=360  Identities=14%  Similarity=0.132  Sum_probs=251.2

Q ss_pred             cccccEeccccccccccccccccccceeeecccccccc------------------ccccCcee--cCCCccEEEecCCC
Q 009754           37 CDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTS------------------FCLENYTL--EFPSLERVSMTHCP   96 (526)
Q Consensus        37 c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~------------------~~~~~~~~--~~~~L~~L~l~~c~   96 (526)
                      ++.+..+|..+++        +++|++|+++++. ++.                  ++..  ..  .+++|++|++++|.
T Consensus       192 ~n~l~~ip~~l~~--------l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~  260 (636)
T 4eco_A          192 SNNITFVSKAVMR--------LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCP  260 (636)
T ss_dssp             SCEEEEECGGGGG--------CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCT
T ss_pred             cCCCccCCHHHhc--------ccCCCEEECcCCc-cccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCc
Confidence            3466678877776        8899999998765 555                  4333  44  68999999999998


Q ss_pred             CccccccCcccCCCeeeEEecccccccceeeeccccch-hhH-HhhhhhcCC------CCCcEEEeecCCCCceecc--C
Q 009754           97 NMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNS-TIQ-KCYEEMIGF------RDMEYLQLSYFPHLKEIWH--G  166 (526)
Q Consensus        97 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~~------~~L~~L~l~~~~~l~~~~~--~  166 (526)
                      ....+|..+..+++|++|++++              +. ... .+|..+..+      ++|+.|+++++. ++.++.  .
T Consensus       261 l~~~~p~~l~~l~~L~~L~Ls~--------------n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~  325 (636)
T 4eco_A          261 NLTKLPTFLKALPEMQLINVAC--------------NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS  325 (636)
T ss_dssp             TCSSCCTTTTTCSSCCEEECTT--------------CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH
T ss_pred             CCccChHHHhcCCCCCEEECcC--------------CCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh
Confidence            7788888888899999999983              22 222 456555444      899999999876 444433  2


Q ss_pred             CCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCc-cceEecCCC
Q 009754          167 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPK-LYGLRLIDL  245 (526)
Q Consensus       167 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~  245 (526)
                      .    ..+++|++|++++|.....++   .+..+++|++|++++| .+..+|.          .+..+++ |+.|+++++
T Consensus       326 l----~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N-~l~~lp~----------~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          326 L----QKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYN-QITEIPA----------NFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             H----TTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSS-EEEECCT----------TSEEECTTCCEEECCSS
T ss_pred             h----ccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCC-ccccccH----------hhhhhcccCcEEEccCC
Confidence            2    567899999999885332553   2788899999999988 4556654          4566788 999999886


Q ss_pred             ccccccccCCCccccCCCcceEeeecCCCCcccc-------------CcccceeeecCCCCccccchhhhhhcccccccc
Q 009754          246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-------------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF  312 (526)
Q Consensus       246 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~  312 (526)
                      . ++.+|.... ...+++|+.|+++++ ++....             ...++.|+++++.+..++....           
T Consensus       388 ~-l~~lp~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-----------  453 (636)
T 4eco_A          388 K-LKYIPNIFD-AKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF-----------  453 (636)
T ss_dssp             C-CSSCCSCCC-TTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH-----------
T ss_pred             c-Ccccchhhh-hcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH-----------
Confidence            4 556655422 223458999999985 454432             1367888888887776543210           


Q ss_pred             ccCCCCCCccEEEecCCCCceEecccCChh----hhhhcccceeEeccCcCccccCCCCC--CCCCCCEEeeccccCccc
Q 009754          313 DEKVSFPRLRWLELSGLHKVQHLWKENDES----NKAFANLESLEISECSKLQKLVPPSW--HLENLEALEVSKCHGLIN  386 (526)
Q Consensus       313 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~----~~~l~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~  386 (526)
                         ..+++|+.|+++++ .++.++...+..    ...+++|+.|++++|. ++.+|..+.  .+++|++|+++++ .++.
T Consensus       454 ---~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~  527 (636)
T 4eco_A          454 ---STGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYN-SFSK  527 (636)
T ss_dssp             ---HTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSS-CCSS
T ss_pred             ---ccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCC-CCCC
Confidence               13589999999986 466777655321    0223499999999974 668888876  8999999999996 5666


Q ss_pred             cccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCC
Q 009754          387 LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCP  466 (526)
Q Consensus       387 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~  466 (526)
                      +|.  .+..+++|++|+++++..+..-..  .+........+++|+.|+++++ .++.+|...    +++|++|++++|+
T Consensus       528 ip~--~~~~l~~L~~L~Ls~N~~ls~N~l--~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N~  598 (636)
T 4eco_A          528 FPT--QPLNSSTLKGFGIRNQRDAQGNRT--LREWPEGITLCPSLTQLQIGSN-DIRKVNEKI----TPNISVLDIKDNP  598 (636)
T ss_dssp             CCC--GGGGCSSCCEEECCSCBCTTCCBC--CCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC----CTTCCEEECCSCT
T ss_pred             cCh--hhhcCCCCCEEECCCCcccccCcc--cccChHHHhcCCCCCEEECCCC-cCCccCHhH----hCcCCEEECcCCC
Confidence            665  346899999999976431110000  0111112345899999999998 458888764    5899999999986


Q ss_pred             Cce
Q 009754          467 KMK  469 (526)
Q Consensus       467 ~l~  469 (526)
                      -..
T Consensus       599 l~~  601 (636)
T 4eco_A          599 NIS  601 (636)
T ss_dssp             TCE
T ss_pred             Ccc
Confidence            544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=230.06  Aligned_cols=227  Identities=19%  Similarity=0.199  Sum_probs=148.9

Q ss_pred             CCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc---CcccceeeecCCCCccccchhhhhhcccc
Q 009754          232 PLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI---SNSVVHVTTDNKEPQKLTSEENFLLAHQV  308 (526)
Q Consensus       232 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~~  308 (526)
                      ..+++|+.|+++++ .+..++..   +..+ +|++|++++| ++..++   ...++.+.++++......           
T Consensus       279 ~~l~~L~~L~l~~~-~l~~l~~~---~~~~-~L~~L~l~~n-~~~~l~~~~l~~L~~L~l~~n~~~~~~-----------  341 (570)
T 2z63_A          279 NCLTNVSSFSLVSV-TIERVKDF---SYNF-GWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAF-----------  341 (570)
T ss_dssp             GGGTTCSEEEEESC-EECSCCBC---CSCC-CCSEEEEESC-BCSSCCBCBCSSCCEEEEESCBSCCBC-----------
T ss_pred             cCcCcccEEEecCc-cchhhhhh---hccC-CccEEeeccC-cccccCcccccccCEEeCcCCcccccc-----------
Confidence            34556666666654 23344333   3344 6666666664 333333   345556666555433211           


Q ss_pred             ccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccc
Q 009754          309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL  388 (526)
Q Consensus       309 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~  388 (526)
                           ....+++|+.|+++++. ++..... ......+++|+.|++++|. +..++..+..+++|++|+++++. +...+
T Consensus       342 -----~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~  412 (570)
T 2z63_A          342 -----SEVDLPSLEFLDLSRNG-LSFKGCC-SQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMS  412 (570)
T ss_dssp             -----CCCBCTTCCEEECCSSC-CBEEEEE-EHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCT
T ss_pred             -----ccccCCCCCEEeCcCCc-cCccccc-cccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-ccccc
Confidence                 11467899999999864 4443200 0112678999999999975 56666568889999999999964 55544


Q ss_pred             cchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccc-ceecCCCccCCCCCccEEEEcCCCC
Q 009754          389 TFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSL-TSFCLGNYALEFPSLKQVVVRQCPK  467 (526)
Q Consensus       389 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~l~~C~~  467 (526)
                      ....+..+++|++|++++|. ++....       .....+++|+.|++.+|.-. ..+|.....  +++|++|++++|.-
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~--l~~L~~L~l~~n~l  482 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTH-TRVAFN-------GIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQL  482 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSC-CEECCT-------TTTTTCTTCCEEECTTCEEGGGEECSCCTT--CTTCCEEECTTSCC
T ss_pred             chhhhhcCCCCCEEeCcCCc-ccccch-------hhhhcCCcCcEEECcCCcCccccchhhhhc--ccCCCEEECCCCcc
Confidence            33345788999999999984 443322       12245799999999998543 357765555  99999999999855


Q ss_pred             ceeccCCCCCCCCcceEEeeccCCCCC
Q 009754          468 MKIFSQGVLDTPMLNKVNVTEEEKDDD  494 (526)
Q Consensus       468 l~~lp~~~~~~~~L~~l~l~~~~~~~~  494 (526)
                      ....|..+..+++|+.|+++++++...
T Consensus       483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          483 EQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            555577777899999999987777543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=8.3e-25  Score=229.00  Aligned_cols=410  Identities=13%  Similarity=0.095  Sum_probs=262.9

Q ss_pred             cccceeEEeeccCceeecc-cccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccC
Q 009754            2 IFLLFYFFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLEN   79 (526)
Q Consensus         2 ~~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   79 (526)
                      +++++++|+++.+...... ..++.+++|++|+++++ .+..+ |..+.+        +++|++|+++++ .++.++.. 
T Consensus        19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--------l~~L~~L~Ls~N-~l~~lp~~-   87 (520)
T 2z7x_B           19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKF--------NQELEYLDLSHN-KLVKISCH-   87 (520)
T ss_dssp             CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTT--------CTTCCEEECCSS-CCCEEECC-
T ss_pred             ccccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhc--------ccCCCEEecCCC-ceeecCcc-
Confidence            3467888888877655433 36788888888888886 57666 555665        788888888875 45555443 


Q ss_pred             ceecCCCccEEEecCCCCcc-ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCC--cEEEeec
Q 009754           80 YTLEFPSLERVSMTHCPNMK-TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDM--EYLQLSY  156 (526)
Q Consensus        80 ~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L--~~L~l~~  156 (526)
                         .+++|++|++++|..-. .+|..+..+++|++|++++.               .+..  ..+..+++|  +.|++++
T Consensus        88 ---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n---------------~l~~--~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           88 ---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT---------------HLEK--SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             ---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES---------------SCCG--GGGGGGTTSCEEEEEEEE
T ss_pred             ---ccCCccEEeccCCccccccchhhhccCCcceEEEecCc---------------ccch--hhccccccceeeEEEeec
Confidence               58888888888885333 35567777888888888842               1111  123345555  8888877


Q ss_pred             CCC--CceeccCC----------------------CCCcCCCCCccEEEEecCCC------cccCCChHHHhcCCCCCee
Q 009754          157 FPH--LKEIWHGQ----------------------ALPVSFFNNLARLVVDDCTN------MSSAIPANLLRCLNNLQWL  206 (526)
Q Consensus       157 ~~~--l~~~~~~~----------------------~~~~~~l~~L~~L~l~~c~~------l~~~~~~~~l~~l~~L~~L  206 (526)
                      +.-  ....+...                      ......+++|+.|++++|..      .....+  .++.+++|++|
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L  225 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNL  225 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEE
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhc
Confidence            652  11111000                      00012355666666665530      111111  15666777777


Q ss_pred             eeccccccchhcc-ccccccccCCCCCCCCccceEecCCCccccccccCCC--ccccCCCcceEeeecCCCCccccC---
Q 009754          207 EVRNCDSIEEVLH-LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG--NIIELPELQHLTIQNCPDMETFIS---  280 (526)
Q Consensus       207 ~l~~~~~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~---  280 (526)
                      +++++......+. +.        .....++|+.|+++++.--..++....  ....+++|+.++++++ .+ .++.   
T Consensus       226 ~l~~~~l~~~~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~-~~p~~~~  295 (520)
T 2z7x_B          226 TLNNIETTWNSFIRIL--------QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VF-GFPQSYI  295 (520)
T ss_dssp             EEEEEEEEHHHHHHHH--------HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CC-CSCTHHH
T ss_pred             cccccccCHHHHHHHH--------HHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc-ce-ecchhhh
Confidence            7766532221110 00        001235788888887643224443310  0157888888888885 34 3331   


Q ss_pred             ------cccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE-ecccCChhhhhhcccceeE
Q 009754          281 ------NSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-LWKENDESNKAFANLESLE  353 (526)
Q Consensus       281 ------~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~  353 (526)
                            ..++.++++++.......                ...+++|+.|+++++. ++. ++...    ..+++|+.|+
T Consensus       296 ~~~~~~~~L~~L~l~~n~l~~~~~----------------~~~l~~L~~L~Ls~n~-l~~~~~~~~----~~l~~L~~L~  354 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTRMVHMLC----------------PSKISPFLHLDFSNNL-LTDTVFENC----GHLTELETLI  354 (520)
T ss_dssp             HHHHHTCCCSEEEEESSCCCCCCC----------------CSSCCCCCEEECCSSC-CCTTTTTTC----CCCSSCCEEE
T ss_pred             hcccccCceeEEEcCCCccccccc----------------hhhCCcccEEEeECCc-cChhhhhhh----ccCCCCCEEE
Confidence                  458888888887654321                1356899999999864 443 33333    7789999999


Q ss_pred             eccCcCcc---ccCCCCCCCCCCCEEeeccccCccc-cccchhhhhccCCceEEEecccCcceeeccCCccccccccccc
Q 009754          354 ISECSKLQ---KLVPPSWHLENLEALEVSKCHGLIN-LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFK  429 (526)
Q Consensus       354 l~~c~~l~---~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~  429 (526)
                      +++|. ++   .+|..+..+++|++|+++++. +.. ++.. ....+++|++|++++|.--..++.          ...+
T Consensus       355 L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~----------~l~~  421 (520)
T 2z7x_B          355 LQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG-DCSWTKSLLSLNMSSNILTDTIFR----------CLPP  421 (520)
T ss_dssp             CCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC-SCCCCTTCCEEECCSSCCCGGGGG----------SCCT
T ss_pred             ccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcccccc-hhccCccCCEEECcCCCCCcchhh----------hhcc
Confidence            99875 44   445567888999999999964 555 6653 346779999999999752222221          1127


Q ss_pred             ccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEeeccCCC
Q 009754          430 ELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       430 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~~  492 (526)
                      +|+.|+++++ .++.+|.....  +++|++|++++| +++.+|.. +..+++|+.++++++.+.
T Consensus       422 ~L~~L~Ls~N-~l~~ip~~~~~--l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          422 RIKVLDLHSN-KIKSIPKQVVK--LEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             TCCEEECCSS-CCCCCCGGGGG--CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCEEECCCC-cccccchhhhc--CCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCc
Confidence            9999999998 68888887665  999999999996 77789876 667899999999777765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=4.4e-24  Score=225.04  Aligned_cols=420  Identities=15%  Similarity=0.126  Sum_probs=253.5

Q ss_pred             cccceeEEeeccCceeecc-cccCCcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccC
Q 009754            2 IFLLFYFFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLEN   79 (526)
Q Consensus         2 ~~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   79 (526)
                      +++.++.++++........ ..++.+++|++|+++++ .+..++. .+.+        +++|++|+++++ .+++.+...
T Consensus        24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~~   93 (549)
T 2z81_A           24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYS--------LGSLEHLDLSDN-HLSSLSSSW   93 (549)
T ss_dssp             CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTT--------CTTCCEEECTTS-CCCSCCHHH
T ss_pred             CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccc--------cccCCEEECCCC-ccCccCHHH
Confidence            4578899999987755433 36888999999999996 6777754 4555        888999999875 344444332


Q ss_pred             ceecCCCccEEEecCCCCcc--ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhh-hhhcCCCCCcEEEeec
Q 009754           80 YTLEFPSLERVSMTHCPNMK--TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSY  156 (526)
Q Consensus        80 ~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~  156 (526)
                       ...+++|++|++++|. ++  ..|..+..+++|++|+++++              ..+..++ ..+..+++|++|++++
T Consensus        94 -~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n--------------~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           94 -FGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNV--------------ETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             -HTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEES--------------SSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             -hccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCC--------------ccccccCHhhhhcccccCeeeccC
Confidence             3468899999999884 44  34556677888999998842              2223333 3456678888888887


Q ss_pred             CCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcc--cc--ccc--------
Q 009754          157 FPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH--LE--EQN--------  224 (526)
Q Consensus       157 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~--~~--~~~--------  224 (526)
                      +.-....+...    ..+++|++|++.++.. ..+ +...+..+++|++|++++|. +...+.  ..  ...        
T Consensus       158 n~l~~~~~~~l----~~l~~L~~L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l  230 (549)
T 2z81_A          158 LSLRNYQSQSL----KSIRDIHHLTLHLSES-AFL-LEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAF  230 (549)
T ss_dssp             TTCCEECTTTT----TTCSEEEEEEEECSBS-TTH-HHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEE
T ss_pred             CcccccChhhh----hccccCceEecccCcc-ccc-chhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceec
Confidence            76222222222    3466777777776642 222 33334567777777777763 333210  00  000        


Q ss_pred             -----------cccCCCCCCCCccceEecCCCccccccccC----CCccccCCCcceEeeecC-----------------
Q 009754          225 -----------ADKEHRGPLFPKLYGLRLIDLPKLKRFCNF----TGNIIELPELQHLTIQNC-----------------  272 (526)
Q Consensus       225 -----------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~~~~~L~~L~l~~c-----------------  272 (526)
                                 ..+. ....+++|+.+.+++|.. ..+...    ...+..+++|+.|.+.++                 
T Consensus       231 ~~n~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          231 RGSVLTDESFNELLK-LLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             ESCEEEHHHHHHHHG-GGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             cccccchhHHHHHHH-Hhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence                       0000 112233344444433321 110000    000223334444444332                 


Q ss_pred             -----------CCCcccc------CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEe
Q 009754          273 -----------PDMETFI------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHL  335 (526)
Q Consensus       273 -----------~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  335 (526)
                                 .++..++      ...++.|+++++.+.+...           ......+.+++|+.|+++++ .++.+
T Consensus       309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~~~l~~L~~L~Ls~N-~l~~~  376 (549)
T 2z81_A          309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL-----------KNSACKGAWPSLQTLVLSQN-HLRSM  376 (549)
T ss_dssp             STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH-----------HHHTCTTSSTTCCEEECTTS-CCCCH
T ss_pred             cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc-----------cchhhhhccccCcEEEccCC-ccccc
Confidence                       1233222      2334444444444332100           00112356789999999886 45544


Q ss_pred             cccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeec
Q 009754          336 WKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQ  415 (526)
Q Consensus       336 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~  415 (526)
                      +... .....+++|+.|++++| .++.+|..+..+++|++|+++++ .++.++..    -.++|++|++++| +++.+. 
T Consensus       377 ~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~----~~~~L~~L~Ls~N-~l~~~~-  447 (549)
T 2z81_A          377 QKTG-EILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC----IPQTLEVLDVSNN-NLDSFS-  447 (549)
T ss_dssp             HHHH-HHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT----SCTTCSEEECCSS-CCSCCC-
T ss_pred             ccch-hhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccch----hcCCceEEECCCC-Chhhhc-
Confidence            3210 01167889999999987 57788888888899999999996 46666542    2368999999887 455432 


Q ss_pred             cCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC-CCCCCCCcceEEeeccCCC
Q 009754          416 LQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       416 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~l~~~~~~  492 (526)
                                ..+++|++|+++++ .++.+|.. ..  +++|++|+++++ +++.+|. .+..+++|+.++++++.+.
T Consensus       448 ----------~~l~~L~~L~Ls~N-~l~~ip~~-~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          448 ----------LFLPRLQELYISRN-KLKTLPDA-SL--FPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             ----------CCCTTCCEEECCSS-CCSSCCCG-GG--CTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred             ----------ccCChhcEEECCCC-ccCcCCCc-cc--CccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCcc
Confidence                      24799999999998 67888764 33  899999999986 5655554 4667899999999777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=2.9e-23  Score=229.29  Aligned_cols=131  Identities=8%  Similarity=0.012  Sum_probs=86.7

Q ss_pred             ccceeEEeeccCceeec-ccccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCc
Q 009754            3 FLLFYFFNIHTHAHTFA-YFQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY   80 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (526)
                      .++++.||++....... ...++.+++|++|+|++|..+..+ |..+.+        +++|++|+++++. ++...+.. 
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~--------L~~L~~L~Ls~N~-l~~~~p~~-   92 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN--------LPNLRILDLGSSK-IYFLHPDA-   92 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS--------CTTCCEEECTTCC-CCEECTTS-
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC--------CCCCCEEECCCCc-CcccCHhH-
Confidence            46788888887665443 346888888888988887667777 555665        7888888888753 44443333 


Q ss_pred             eecCCCccEEEecCCCCccccccC--cccCCCeeeEEecccccccceeeeccccchhhHHh--hhhhcCCCCCcEEEeec
Q 009754           81 TLEFPSLERVSMTHCPNMKTFSHG--ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC--YEEMIGFRDMEYLQLSY  156 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~  156 (526)
                      ...+++|++|++++|..-...+..  +..+++|++|+++++               .+..+  ...+..+++|++|++++
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N---------------~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN---------------QIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC---------------CCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC---------------cccccccchhHhhCCCCCEEECCC
Confidence            346788888888888533334443  566788888888732               11222  13455677777777777


Q ss_pred             CC
Q 009754          157 FP  158 (526)
Q Consensus       157 ~~  158 (526)
                      +.
T Consensus       158 N~  159 (844)
T 3j0a_A          158 NQ  159 (844)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.9e-24  Score=235.56  Aligned_cols=362  Identities=11%  Similarity=0.061  Sum_probs=205.8

Q ss_pred             ccccCCcCCCceEEecccccccE------------------eccccc--cccccccccccccceeeeccccccccccccC
Q 009754           20 YFQVGIPSSLVNLNVSRCDKIEE------------------IIRHVG--EEAKENRIAFSKLKVLILDYLPTLTSFCLEN   79 (526)
Q Consensus        20 ~~~~~~l~~L~~L~L~~c~~l~~------------------l~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   79 (526)
                      +..++.+++|++|+|+++ .+..                  +|..++  +        +++|++|+++++.....++.. 
T Consensus       441 P~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~--------L~~L~~L~Ls~N~l~~~iP~~-  510 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSN--------LKDLTDVELYNCPNMTQLPDF-  510 (876)
T ss_dssp             CGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--------CTTCCEEEEESCTTCCSCCGG-
T ss_pred             hHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhcc--------CCCCCEEECcCCCCCccChHH-
Confidence            346888999999999996 4665                  565544  4        666777777665544444322 


Q ss_pred             ceecCCCccEEEecCCCCcc--ccccCcccC-------CCeeeEEecccccccceeeeccccchhhHHhhh--hhcCCCC
Q 009754           80 YTLEFPSLERVSMTHCPNMK--TFSHGILST-------PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE--EMIGFRD  148 (526)
Q Consensus        80 ~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~  148 (526)
                       ...+++|+.|++++|..++  .+|..+..+       ++|+.|++++               +.+..++.  .+..+++
T Consensus       511 -l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~---------------N~L~~ip~~~~l~~L~~  574 (876)
T 4ecn_A          511 -LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY---------------NNLEEFPASASLQKMVK  574 (876)
T ss_dssp             -GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS---------------SCCCBCCCHHHHTTCTT
T ss_pred             -HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC---------------CcCCccCChhhhhcCCC
Confidence             3456677777777664333  244433322       3666666652               22224444  5555666


Q ss_pred             CcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCC-CCeeeeccccccchhcccccccccc
Q 009754          149 MEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNN-LQWLEVRNCDSIEEVLHLEEQNADK  227 (526)
Q Consensus       149 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~  227 (526)
                      |+.|+++++. ++.++ ..    ..+++|+.|++++|. ++.+ |.. +..+++ |++|++++|. +..+|...      
T Consensus       575 L~~L~Ls~N~-l~~lp-~~----~~L~~L~~L~Ls~N~-l~~l-p~~-l~~l~~~L~~L~Ls~N~-L~~lp~~~------  638 (876)
T 4ecn_A          575 LGLLDCVHNK-VRHLE-AF----GTNVKLTDLKLDYNQ-IEEI-PED-FCAFTDQVEGLGFSHNK-LKYIPNIF------  638 (876)
T ss_dssp             CCEEECTTSC-CCBCC-CC----CTTSEESEEECCSSC-CSCC-CTT-SCEECTTCCEEECCSSC-CCSCCSCC------
T ss_pred             CCEEECCCCC-cccch-hh----cCCCcceEEECcCCc-cccc-hHH-HhhccccCCEEECcCCC-CCcCchhh------
Confidence            6666666554 33332 22    345566666666653 3333 222 555555 6666666653 44444311      


Q ss_pred             CCCCCCCCccceEecCCCccccccccCCCcc--ccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhc
Q 009754          228 EHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI--IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA  305 (526)
Q Consensus       228 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~  305 (526)
                        .....++|+.|+++++.--..++......  ..+++|+.|++++| ++..++                  ...     
T Consensus       639 --~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp------------------~~~-----  692 (876)
T 4ecn_A          639 --NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFP------------------TEL-----  692 (876)
T ss_dssp             --CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCC------------------HHH-----
T ss_pred             --hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccC------------------HHH-----
Confidence              11112336666666553222111111001  12335555555553 333222                  110     


Q ss_pred             cccccccccCCCCCCccEEEecCCCCceEecccCChh----hhhhcccceeEeccCcCccccCCCCC--CCCCCCEEeec
Q 009754          306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES----NKAFANLESLEISECSKLQKLVPPSW--HLENLEALEVS  379 (526)
Q Consensus       306 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~----~~~l~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~  379 (526)
                               ...+++|+.|+++++ .++.++...+..    ...+++|+.|++++| .++.+|..+.  .+++|+.|+++
T Consensus       693 ---------~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls  761 (876)
T 4ecn_A          693 ---------FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVS  761 (876)
T ss_dssp             ---------HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECC
T ss_pred             ---------HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeC
Confidence                     013478999999885 466666554321    123458999999887 5668887776  88999999999


Q ss_pred             cccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccE
Q 009754          380 KCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQ  459 (526)
Q Consensus       380 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~  459 (526)
                      ++ .+..+|.  .+..+++|+.|++++++.+..-..  .+.....+..+++|+.|++++| .++.+|...    +++|++
T Consensus       762 ~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l--~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l----~~~L~~  831 (876)
T 4ecn_A          762 YN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRI--LRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL----TPQLYI  831 (876)
T ss_dssp             SS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBC--CCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC----CSSSCE
T ss_pred             CC-CCCccch--hhhcCCCCCEEECCCCCCcccccc--cccChHHHhcCCCCCEEECCCC-CCCccCHhh----cCCCCE
Confidence            85 5666665  346889999999977431111000  0111112345789999999998 458888764    579999


Q ss_pred             EEEcCCCCcee
Q 009754          460 VVVRQCPKMKI  470 (526)
Q Consensus       460 L~l~~C~~l~~  470 (526)
                      |++++|+-...
T Consensus       832 LdLs~N~l~~i  842 (876)
T 4ecn_A          832 LDIADNPNISI  842 (876)
T ss_dssp             EECCSCTTCEE
T ss_pred             EECCCCCCCcc
Confidence            99998865543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=9.8e-23  Score=220.37  Aligned_cols=452  Identities=15%  Similarity=0.129  Sum_probs=212.3

Q ss_pred             ccceeEEeeccCceeeccc-ccCCcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCc
Q 009754            3 FLLFYFFNIHTHAHTFAYF-QVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY   80 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (526)
                      +++|++|+++.+......+ .++.+++|++|+++++ .+..++. .+++        +++|++|+++++. ++...... 
T Consensus        72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--------l~~L~~L~Ls~n~-l~~~~~~~-  140 (680)
T 1ziw_A           72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK--------QKNLITLDLSHNG-LSSTKLGT-  140 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT--------CTTCCEEECCSSC-CSCCCCCS-
T ss_pred             ccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccc--------cCCCCEEECCCCc-ccccCchh-
Confidence            5789999999876554333 4899999999999996 6777764 4555        8899999998763 44443332 


Q ss_pred             eecCCCccEEEecCCCCccccccC---cccCCCeeeEEecccccc-------------cceeeecccc-chhhHHhhhhh
Q 009754           81 TLEFPSLERVSMTHCPNMKTFSHG---ILSTPKLHKVQVTEKEEG-------------ELHHWEGNKL-NSTIQKCYEEM  143 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~~L~~L~l~~~~~~-------------~~~~~~~~~~-~~~~~~l~~~~  143 (526)
                      ...+++|++|+++++. ++.++..   ....++|++|+++++.-.             ..+...+... ......++..+
T Consensus       141 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l  219 (680)
T 1ziw_A          141 QVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL  219 (680)
T ss_dssp             SSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH
T ss_pred             hcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh
Confidence            3468888888888874 4443322   223577888888754211             0000000000 00111111111


Q ss_pred             cCCCCCcEEEeecCCCCceeccCCCCCcCCC--CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcc-c
Q 009754          144 IGFRDMEYLQLSYFPHLKEIWHGQALPVSFF--NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH-L  220 (526)
Q Consensus       144 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~  220 (526)
                       ..++|+.|+++++. ++...... +  ..+  ++|++|++++|. ++.+++. .++.+++|++|++++|......+. +
T Consensus       220 -~~~~L~~L~L~~n~-l~~~~~~~-~--~~l~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (680)
T 1ziw_A          220 -ANTSIRNLSLSNSQ-LSTTSNTT-F--LGLKWTNLTMLDLSYNN-LNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSL  292 (680)
T ss_dssp             -TTSCCCEEECTTSC-CCEECTTT-T--GGGGGSCCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSCCBSEECTTTT
T ss_pred             -hhccccEEEccCCc-ccccChhH-h--hccCcCCCCEEECCCCC-cCccCcc-cccCcccccEeeCCCCccCccChhhh
Confidence             23556666665553 22111000 0  111  235555555552 2222221 144555555555555422111111 0


Q ss_pred             c----------------------ccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCC-CCcc
Q 009754          221 E----------------------EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCP-DMET  277 (526)
Q Consensus       221 ~----------------------~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~  277 (526)
                      .                      ............+++|+.|+++++. +..++  ...+..+++|++|++++|. .+..
T Consensus       293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~  369 (680)
T 1ziw_A          293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK--SNMFTGLINLKYLSLSNSFTSLRT  369 (680)
T ss_dssp             TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC--TTTTTTCTTCCEEECTTCBSCCCE
T ss_pred             cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC--hhHhccccCCcEEECCCCchhhhh
Confidence            0                      0000000123445566666665542 23221  1114456666666666542 1111


Q ss_pred             cc--------CcccceeeecCCCCccccc--------hhhhhhc-ccccc-c-cccCCCCCCccEEEecCCCCceEeccc
Q 009754          278 FI--------SNSVVHVTTDNKEPQKLTS--------EENFLLA-HQVQP-L-FDEKVSFPRLRWLELSGLHKVQHLWKE  338 (526)
Q Consensus       278 ~~--------~~~L~~L~i~~~~~~~~~~--------~~~~~~~-~~~~~-~-~~~~~~~~~L~~L~l~~~~~l~~l~~~  338 (526)
                      .+        ...++.++++++.+..+..        +..+... ..+.. . ......+++|+.|+++++. +..+...
T Consensus       370 l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~  448 (680)
T 1ziw_A          370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRN  448 (680)
T ss_dssp             ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTT
T ss_pred             cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChh
Confidence            11        1345556666555443221        0000000 00100 0 0123345566666666542 3333333


Q ss_pred             CChhhhhhcccceeEeccCcC--ccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeecc
Q 009754          339 NDESNKAFANLESLEISECSK--LQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQL  416 (526)
Q Consensus       339 ~~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  416 (526)
                      .+   ..+++|+.|+++++..  +..+|..+..+++|+.|+++++ .++.++.. .+..+++|++|+++++ .++.+...
T Consensus       449 ~~---~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~  522 (680)
T 1ziw_A          449 SF---ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDD-MLEGLEKLEILDLQHN-NLARLWKH  522 (680)
T ss_dssp             TT---TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCGGGGST
T ss_pred             hh---hcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChh-hhccccccCEEeCCCC-Cccccchh
Confidence            22   4456666666665432  2345666677777777777774 45555543 2356677777777765 23332110


Q ss_pred             CC-cccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEe
Q 009754          417 QV-GEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNV  486 (526)
Q Consensus       417 ~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l  486 (526)
                      .- +........+++|+.|+++++ .++.++.+... .+++|++|++++ .+++.+|.. +..+++|+.|++
T Consensus       523 ~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~-~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L  591 (680)
T 1ziw_A          523 ANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFK-DLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNL  591 (680)
T ss_dssp             TSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             hccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcc-cccCcceeECCC-CCCCcCCHhHhCCCCCCCEEEC
Confidence            00 000001123455555555554 34444443211 245555555543 244444432 223344444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=6.4e-23  Score=221.82  Aligned_cols=438  Identities=15%  Similarity=0.128  Sum_probs=205.2

Q ss_pred             ccceeEEeeccCceeeccc-ccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCc
Q 009754            3 FLLFYFFNIHTHAHTFAYF-QVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY   80 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (526)
                      .++++.|+++........+ .++.+++|++|+++++ .+..+ |..+.+        +++|++|+++++ .++..+... 
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--------l~~L~~L~L~~n-~l~~l~~~~-   92 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQK--------LPMLKVLNLQHN-ELSQLSDKT-   92 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHH--------CTTCCEEECCSS-CCCCCCTTT-
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhc--------ccCcCEEECCCC-ccCccChhh-
Confidence            3577888888765444333 4778888888888885 56665 333444        677777777764 355444332 


Q ss_pred             eecCCCccEEEecCCCCccccc-cCcccCCCeeeEEecccccc-------------cceeeeccccchhhHHhh-hh--h
Q 009754           81 TLEFPSLERVSMTHCPNMKTFS-HGILSTPKLHKVQVTEKEEG-------------ELHHWEGNKLNSTIQKCY-EE--M  143 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~~~~~-------------~~~~~~~~~~~~~~~~l~-~~--~  143 (526)
                      ...+++|++|++++|. ++.++ ..+..+++|++|+++++.-.             ..+...+    +.+..++ ..  .
T Consensus        93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~  167 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN----NKIQALKSEELDI  167 (680)
T ss_dssp             TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS----SCCCCBCHHHHGG
T ss_pred             hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC----CcccccCHHHhhc
Confidence            2357777777777774 44444 34556777777777642110             0000000    0111111 00  1


Q ss_pred             cCCCCCcEEEeecCCCCceeccC-C-CCCc----------------------CCCCCccEEEEecCCCcccCCChHHHhc
Q 009754          144 IGFRDMEYLQLSYFPHLKEIWHG-Q-ALPV----------------------SFFNNLARLVVDDCTNMSSAIPANLLRC  199 (526)
Q Consensus       144 ~~~~~L~~L~l~~~~~l~~~~~~-~-~~~~----------------------~~l~~L~~L~l~~c~~l~~~~~~~~l~~  199 (526)
                      ..+++|+.|+++++. ++..... . .++.                      ...++|++|+++++. ++...+.. +..
T Consensus       168 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~-~~~  244 (680)
T 1ziw_A          168 FANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTT-FLG  244 (680)
T ss_dssp             GTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTT-TGG
T ss_pred             cccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhH-hhc
Confidence            123445555554442 1111000 0 0000                      001334444444442 22221211 333


Q ss_pred             CC--CCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCC---
Q 009754          200 LN--NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPD---  274 (526)
Q Consensus       200 l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~---  274 (526)
                      ++  +|++|++++|. +..++..         .++.+++|+.|+++++. +....  ...+..+++|+.|+++++..   
T Consensus       245 l~~~~L~~L~Ls~n~-l~~~~~~---------~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNN-LNVVGND---------SFAWLPQLEYFFLEYNN-IQHLF--SHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             GGGSCCCEEECTTSC-CCEECTT---------TTTTCTTCCEEECCSCC-BSEEC--TTTTTTCTTCCEEECTTCBCCC-
T ss_pred             cCcCCCCEEECCCCC-cCccCcc---------cccCcccccEeeCCCCc-cCccC--hhhhcCCCCccEEeccchhhhcc
Confidence            32  25555555552 2222110         34455666666666643 22221  11144566666666654311   


Q ss_pred             -----Cccc------cCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCC-CceEecccCChh
Q 009754          275 -----METF------ISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH-KVQHLWKENDES  342 (526)
Q Consensus       275 -----l~~~------~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~l~~~~~~~  342 (526)
                           +..+      ...+++.++++++.+..+..              .....+++|+.|+++++. .+..++...+..
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~--------------~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~  377 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS--------------NMFTGLINLKYLSLSNSFTSLRTLTNETFVS  377 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCT--------------TTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCCh--------------hHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence                 0000      02345555555554443221              112344566666666542 123333222110


Q ss_pred             hhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeec-------
Q 009754          343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQ-------  415 (526)
Q Consensus       343 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~-------  415 (526)
                       ...++|+.|++++|......+..+..+++|++|+++++.-...++.. ....+++|++|++++|. +..+..       
T Consensus       378 -~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~  454 (680)
T 1ziw_A          378 -LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ-EWRGLENIFEIYLSYNK-YLQLTRNSFALVP  454 (680)
T ss_dssp             -GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG-GGTTCTTCCEEECCSCS-EEECCTTTTTTCT
T ss_pred             -cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc-cccCcccccEEecCCCC-cceeChhhhhcCc
Confidence             11235566666555432233445555666666666664322223322 22455566666665542 222111       


Q ss_pred             -------cCC-----cccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC---------C
Q 009754          416 -------LQV-----GEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ---------G  474 (526)
Q Consensus       416 -------~~~-----~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~---------~  474 (526)
                             .+.     +........+++|+.|+++++ .++.++..... .+++|++|+++++ .++.++.         .
T Consensus       455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~  531 (680)
T 1ziw_A          455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLE-GLEKLEILDLQHN-NLARLWKHANPGGPIYF  531 (680)
T ss_dssp             TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCGGGGSTTSTTSCCCT
T ss_pred             ccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhc-cccccCEEeCCCC-CccccchhhccCCcchh
Confidence                   000     011112234677777777775 46666554322 3778888888775 4444321         1


Q ss_pred             CCCCCCcceEEeeccCCC
Q 009754          475 VLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       475 ~~~~~~L~~l~l~~~~~~  492 (526)
                      +..+++|+.|+++++++.
T Consensus       532 ~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             TTTCTTCCEEECCSSCCC
T ss_pred             hcCCCCCCEEECCCCCCC
Confidence            345677888888766665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=3e-23  Score=218.70  Aligned_cols=429  Identities=15%  Similarity=0.164  Sum_probs=237.4

Q ss_pred             cceeEEeeccCceeecccccCCcCCCceEEecccccccEec-cccccccccccccccccceeeeccccccccccccCcee
Q 009754            4 LLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEII-RHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (526)
Q Consensus         4 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (526)
                      +...+-|++...... +|. +..++|++|+++++ .+..++ ..+.+        +++|++|+++++ .++...... ..
T Consensus         5 ~~~~~c~~~~~~l~~-ip~-~~~~~L~~L~Ls~n-~l~~~~~~~~~~--------l~~L~~L~Ls~n-~i~~~~~~~-~~   71 (549)
T 2z81_A            5 DASGVCDGRSRSFTS-IPS-GLTAAMKSLDLSFN-KITYIGHGDLRA--------CANLQVLILKSS-RINTIEGDA-FY   71 (549)
T ss_dssp             CTTSEEECTTSCCSS-CCS-CCCTTCCEEECCSS-CCCEECSSTTSS--------CTTCCEEECTTS-CCCEECTTT-TT
T ss_pred             CCCceEECCCCcccc-ccc-cCCCCccEEECcCC-ccCccChhhhhc--------CCcccEEECCCC-CcCccChhh-cc
Confidence            334444444433333 332 23489999999997 688874 45665        899999999986 455555443 34


Q ss_pred             cCCCccEEEecCCCCccccccC-cccCCCeeeEEecccccccceeeeccccchhhH--HhhhhhcCCCCCcEEEeecCCC
Q 009754           83 EFPSLERVSMTHCPNMKTFSHG-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ--KCYEEMIGFRDMEYLQLSYFPH  159 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~  159 (526)
                      .+++|++|++++|. ++.++.. +..+++|++|+++++               .+.  ..+..+..+++|++|+++++..
T Consensus        72 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n---------------~l~~~~~~~~~~~l~~L~~L~L~~n~~  135 (549)
T 2z81_A           72 SLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN---------------PYQTLGVTSLFPNLTNLQTLRIGNVET  135 (549)
T ss_dssp             TCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC---------------CCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             ccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC---------------cccccchhhhhhccCCccEEECCCCcc
Confidence            68999999999994 5555544 778999999999842               222  2344567889999999999875


Q ss_pred             Cceecc-CCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccc
Q 009754          160 LKEIWH-GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLY  238 (526)
Q Consensus       160 l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~  238 (526)
                      +..+.. ..    ..+++|++|++++|. ++...+.. ++.+++|++|+++++. ...++..         ....+++|+
T Consensus       136 ~~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~l~~n~-~~~~~~~---------~~~~l~~L~  199 (549)
T 2z81_A          136 FSEIRRIDF----AGLTSLNELEIKALS-LRNYQSQS-LKSIRDIHHLTLHLSE-SAFLLEI---------FADILSSVR  199 (549)
T ss_dssp             CCEECTTTT----TTCCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEEEECSB-STTHHHH---------HHHSTTTBS
T ss_pred             ccccCHhhh----hcccccCeeeccCCc-ccccChhh-hhccccCceEecccCc-ccccchh---------hHhhccccc
Confidence            555432 22    458899999999985 44433333 7889999999999884 4444431         123478888


Q ss_pred             eEecCCCccccccccCC-CccccCCCcceEeeecCCCCcccc----------CcccceeeecCCCCccccch--------
Q 009754          239 GLRLIDLPKLKRFCNFT-GNIIELPELQHLTIQNCPDMETFI----------SNSVVHVTTDNKEPQKLTSE--------  299 (526)
Q Consensus       239 ~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~----------~~~L~~L~i~~~~~~~~~~~--------  299 (526)
                      .|+++++. +...+... .....+++|+.|+++++ .+.+..          ...++.+.++++...++...        
T Consensus       200 ~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  277 (549)
T 2z81_A          200 YLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV  277 (549)
T ss_dssp             EEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred             EEEccCCc-cccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhh
Confidence            88888753 33321100 00224556666666553 222111          12334444444332211100        


Q ss_pred             ------hhhhhc-cccccc--ccc----CCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc---
Q 009754          300 ------ENFLLA-HQVQPL--FDE----KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL---  363 (526)
Q Consensus       300 ------~~~~~~-~~~~~~--~~~----~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l---  363 (526)
                            +.+... ..+...  +..    ...+++|+.|+++++ .++.++...+   ..+++|+.|++++|.....+   
T Consensus       278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~---~~l~~L~~L~Ls~N~l~~~~~~~  353 (549)
T 2z81_A          278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFS---QHLKSLEFLDLSENLMVEEYLKN  353 (549)
T ss_dssp             CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHH---HHCTTCCEEECCSSCCCHHHHHH
T ss_pred             hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCCHHHH---hcCccccEEEccCCccccccccc
Confidence                  000000 000000  000    001245666666553 2444432221   34556666666555432222   


Q ss_pred             CCCCCCCCCCCEEeeccccCcccccc-chhhhhccCCceEEEecccCcceeeccCC-------------ccccccccccc
Q 009754          364 VPPSWHLENLEALEVSKCHGLINLLT-FSTSESLVNLGRMMIADCKMIEQIIQLQV-------------GEEAKDCNVFK  429 (526)
Q Consensus       364 ~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~-------------~~~~~~~~~~~  429 (526)
                      +..+..+++|++|+++++ .++.++. ......+++|++|++++| +++.++..-.             .........++
T Consensus       354 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~  431 (549)
T 2z81_A          354 SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ  431 (549)
T ss_dssp             HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCT
T ss_pred             hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcC
Confidence            123445555556665554 3333321 112344555555555554 2333221000             00000001235


Q ss_pred             ccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754          430 ELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD  493 (526)
Q Consensus       430 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~  493 (526)
                      +|++|+++++ .++.++.     .+++|++|++++| +++.+|... .+++|+.|+++++++..
T Consensus       432 ~L~~L~Ls~N-~l~~~~~-----~l~~L~~L~Ls~N-~l~~ip~~~-~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          432 TLEVLDVSNN-NLDSFSL-----FLPRLQELYISRN-KLKTLPDAS-LFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             TCSEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSSCCCGG-GCTTCCEEECCSSCCCC
T ss_pred             CceEEECCCC-Chhhhcc-----cCChhcEEECCCC-ccCcCCCcc-cCccCCEEecCCCccCC
Confidence            6666666665 4444431     3889999999886 677888743 68899999998777754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=2.2e-21  Score=214.31  Aligned_cols=198  Identities=12%  Similarity=0.028  Sum_probs=136.1

Q ss_pred             eEEeeccCceeecccccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCceecCC
Q 009754            7 YFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP   85 (526)
Q Consensus         7 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (526)
                      ++.|++.+.. ..+|.  ..+++++|+|+++ .+..+ |..+.+        +++|++|+++++.....+.... ...++
T Consensus         7 ~~~dcs~~~L-~~vP~--lp~~l~~LdLs~N-~i~~i~~~~~~~--------l~~L~~LdLs~n~~~~~i~~~~-f~~L~   73 (844)
T 3j0a_A            7 RIAFYRFCNL-TQVPQ--VLNTTERLLLSFN-YIRTVTASSFPF--------LEQLQLLELGSQYTPLTIDKEA-FRNLP   73 (844)
T ss_dssp             EEEEESCCCS-SCCCS--SCTTCCEEEEESC-CCCEECSSSCSS--------CCSCSEEEECTTCCCCEECTTT-TSSCT
T ss_pred             eEEEccCCCC-CCCCC--CCCCcCEEECCCC-cCCccChhHCcc--------cccCeEEeCCCCCCccccCHHH-hcCCC
Confidence            3556665544 44565  5799999999996 68877 556666        8999999999986665554443 45799


Q ss_pred             CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhh--hcCCCCCcEEEeecCCCCcee
Q 009754           86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE--MIGFRDMEYLQLSYFPHLKEI  163 (526)
Q Consensus        86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~  163 (526)
                      +|+.|++++|..-...|..+..+++|++|+++++              .....++..  +..+++|++|+++++. ++..
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n--------------~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~  138 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC--------------GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSL  138 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC--------------CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCC
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCC--------------CCCcccccCccccccCCCCEEECCCCc-cccc
Confidence            9999999999644445778888999999999942              111122332  6688999999999986 3322


Q ss_pred             ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcC--CCCCeeeeccccccchhccccccccccCCCCCCCC------
Q 009754          164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL--NNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFP------  235 (526)
Q Consensus       164 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~------  235 (526)
                      ....  ....+++|++|+++++. ++...+.. +..+  ++|+.|++++|......+.          ..+.++      
T Consensus       139 ~~~~--~~~~L~~L~~L~Ls~N~-i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~----------~~~~~~~~~~~~  204 (844)
T 3j0a_A          139 YLHP--SFGKLNSLKSIDFSSNQ-IFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSV----------DWGKCMNPFRNM  204 (844)
T ss_dssp             CCCG--GGGTCSSCCEEEEESSC-CCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCC----------CCCSSSCTTTTC
T ss_pred             ccch--hHhhCCCCCEEECCCCc-CCeeCHHH-cccccCCccceEECCCCcccccccc----------chhhcCCccccC
Confidence            1110  01568999999999984 44443433 5555  8999999999854443332          222222      


Q ss_pred             ccceEecCCCc
Q 009754          236 KLYGLRLIDLP  246 (526)
Q Consensus       236 ~L~~L~l~~~~  246 (526)
                      +|+.|+++++.
T Consensus       205 ~L~~L~Ls~n~  215 (844)
T 3j0a_A          205 VLEILDVSGNG  215 (844)
T ss_dssp             CBSEEBCSSCC
T ss_pred             ceeEEecCCCc
Confidence            48999998863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=3e-23  Score=212.43  Aligned_cols=234  Identities=18%  Similarity=0.182  Sum_probs=137.2

Q ss_pred             CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceecc
Q 009754           86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH  165 (526)
Q Consensus        86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  165 (526)
                      ++++|++++|. ++.+|.   -.++|++|++++               +.+..++.   .+++|+.|+++++. ++.+  
T Consensus        72 ~l~~L~l~~~~-l~~lp~---~~~~L~~L~l~~---------------n~l~~lp~---~~~~L~~L~l~~n~-l~~l--  126 (454)
T 1jl5_A           72 QAHELELNNLG-LSSLPE---LPPHLESLVASC---------------NSLTELPE---LPQSLKSLLVDNNN-LKAL--  126 (454)
T ss_dssp             TCSEEECTTSC-CSCCCS---CCTTCSEEECCS---------------SCCSSCCC---CCTTCCEEECCSSC-CSCC--
T ss_pred             CCCEEEecCCc-cccCCC---CcCCCCEEEccC---------------CcCCcccc---ccCCCcEEECCCCc-cCcc--
Confidence            45778887774 666554   246777887772               22223332   23678888887764 3321  


Q ss_pred             CCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754          166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (526)
Q Consensus       166 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  245 (526)
                          + ...++|++|++++| .++.+ |.  ++.+++|++|++++| .++.++.             ..++|+.|+++++
T Consensus       127 ----~-~~~~~L~~L~L~~n-~l~~l-p~--~~~l~~L~~L~l~~N-~l~~lp~-------------~~~~L~~L~L~~n  183 (454)
T 1jl5_A          127 ----S-DLPPLLEYLGVSNN-QLEKL-PE--LQNSSFLKIIDVDNN-SLKKLPD-------------LPPSLEFIAAGNN  183 (454)
T ss_dssp             ----C-SCCTTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS
T ss_pred             ----c-CCCCCCCEEECcCC-CCCCC-cc--cCCCCCCCEEECCCC-cCcccCC-------------CcccccEEECcCC
Confidence                1 11267888888877 44555 32  778888888888877 4555443             2357888888776


Q ss_pred             ccccccccCCCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccE
Q 009754          246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRW  323 (526)
Q Consensus       246 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  323 (526)
                       .++.++   . +..+++|++|++++| +++.++  +.+++.++++++....++.                .+.+++|+.
T Consensus       184 -~l~~l~---~-~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~n~l~~lp~----------------~~~l~~L~~  241 (454)
T 1jl5_A          184 -QLEELP---E-LQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPE----------------LQNLPFLTT  241 (454)
T ss_dssp             -CCSSCC---C-CTTCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSSCCC----------------CTTCTTCCE
T ss_pred             -cCCcCc---c-ccCCCCCCEEECCCC-cCCcCCCCcCcccEEECcCCcCCcccc----------------cCCCCCCCE
Confidence             455543   1 567788888888874 555544  4577778877776655442                124567777


Q ss_pred             EEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEE
Q 009754          324 LELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMM  403 (526)
Q Consensus       324 L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~  403 (526)
                      |+++++ .++.++       ..+++|+.|++++|. ++.+|..   +++|++|+++++ .++.++..     .++|+.|+
T Consensus       242 L~l~~N-~l~~l~-------~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N-~l~~l~~~-----~~~L~~L~  303 (454)
T 1jl5_A          242 IYADNN-LLKTLP-------DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN-IFSGLSEL-----PPNLYYLN  303 (454)
T ss_dssp             EECCSS-CCSSCC-------SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSEESCC-----CTTCCEEE
T ss_pred             EECCCC-cCCccc-------ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCC-ccCcccCc-----CCcCCEEE
Confidence            777764 344433       223567777776653 4445433   256666666664 34443220     13455555


Q ss_pred             Eecc
Q 009754          404 IADC  407 (526)
Q Consensus       404 i~~c  407 (526)
                      ++++
T Consensus       304 l~~N  307 (454)
T 1jl5_A          304 ASSN  307 (454)
T ss_dssp             CCSS
T ss_pred             CcCC
Confidence            5443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=1.9e-22  Score=207.91  Aligned_cols=348  Identities=15%  Similarity=0.224  Sum_probs=191.1

Q ss_pred             ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754            3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (526)
                      ++.++.+++..+.. ..++.+..+++|++|++++| .+..+|. +.+        +++|++|++.++. ++....   ..
T Consensus        45 l~~l~~L~l~~~~i-~~l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~--------l~~L~~L~l~~n~-l~~~~~---~~  109 (466)
T 1o6v_A           45 LDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNN-QLTDITP-LKN--------LTKLVDILMNNNQ-IADITP---LA  109 (466)
T ss_dssp             HHTCCEEECCSSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSSC-CCCCGG---GT
T ss_pred             hccccEEecCCCCC-ccCcchhhhcCCCEEECCCC-ccCCchh-hhc--------cccCCEEECCCCc-cccChh---hc
Confidence            34556666654433 23455566666666666664 4555554 443        5666666666542 333222   23


Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+++|++|++++| .++.++. +..+++|++|+++++               .+..++ .+..+++|+.|++++..  ..
T Consensus       110 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n---------------~l~~~~-~~~~l~~L~~L~l~~~~--~~  169 (466)
T 1o6v_A          110 NLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSN---------------TISDIS-ALSGLTSLQQLSFGNQV--TD  169 (466)
T ss_dssp             TCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEE---------------EECCCG-GGTTCTTCSEEEEEESC--CC
T ss_pred             CCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCC---------------ccCCCh-hhccCCcccEeecCCcc--cC
Confidence            4666666666665 3444433 445566666666521               111111 24455666666665321  11


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      .     .+...+++|++|++++|. ++.+ +.  +..+++|++|++++|. +..++.           .+.+++|+.|++
T Consensus       170 ~-----~~~~~l~~L~~L~l~~n~-l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~-----------~~~l~~L~~L~l  228 (466)
T 1o6v_A          170 L-----KPLANLTTLERLDISSNK-VSDI-SV--LAKLTNLESLIATNNQ-ISDITP-----------LGILTNLDELSL  228 (466)
T ss_dssp             C-----GGGTTCTTCCEEECCSSC-CCCC-GG--GGGCTTCSEEECCSSC-CCCCGG-----------GGGCTTCCEEEC
T ss_pred             c-----hhhccCCCCCEEECcCCc-CCCC-hh--hccCCCCCEEEecCCc-cccccc-----------ccccCCCCEEEC
Confidence            1     011345566666666553 3332 11  5556666666666552 322221           223556666666


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCcc
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR  322 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  322 (526)
                      +++. +++++.    +..+++|++|++++| ++...++                                  ...+++|+
T Consensus       229 ~~n~-l~~~~~----l~~l~~L~~L~l~~n-~l~~~~~----------------------------------~~~l~~L~  268 (466)
T 1o6v_A          229 NGNQ-LKDIGT----LASLTNLTDLDLANN-QISNLAP----------------------------------LSGLTKLT  268 (466)
T ss_dssp             CSSC-CCCCGG----GGGCTTCSEEECCSS-CCCCCGG----------------------------------GTTCTTCS
T ss_pred             CCCC-cccchh----hhcCCCCCEEECCCC-ccccchh----------------------------------hhcCCCCC
Confidence            6542 333211    445566666666654 2322211                                  12457888


Q ss_pred             EEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceE
Q 009754          323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRM  402 (526)
Q Consensus       323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L  402 (526)
                      .|+++++ .++.++. .    ..+++|+.|++++|. ++.++. +..+++|+.|++++| .+.+.+.   ...+++|++|
T Consensus       269 ~L~l~~n-~l~~~~~-~----~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L  336 (466)
T 1o6v_A          269 ELKLGAN-QISNISP-L----AGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRL  336 (466)
T ss_dssp             EEECCSS-CCCCCGG-G----TTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEE
T ss_pred             EEECCCC-ccCcccc-c----cCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEe
Confidence            8888875 3444432 1    677888888888864 555543 677788888888886 4555543   3677888888


Q ss_pred             EEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC
Q 009754          403 MIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ  473 (526)
Q Consensus       403 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~  473 (526)
                      ++++| .++.+..         ...+++|+.|++.+|+ +++++. ..  .+++|++|++.+| .++.+|.
T Consensus       337 ~l~~n-~l~~~~~---------l~~l~~L~~L~l~~n~-l~~~~~-~~--~l~~L~~L~l~~n-~~~~~p~  392 (466)
T 1o6v_A          337 FFYNN-KVSDVSS---------LANLTNINWLSAGHNQ-ISDLTP-LA--NLTRITQLGLNDQ-AWTNAPV  392 (466)
T ss_dssp             ECCSS-CCCCCGG---------GTTCTTCCEEECCSSC-CCBCGG-GT--TCTTCCEEECCCE-EEECCCB
T ss_pred             ECCCC-ccCCchh---------hccCCCCCEEeCCCCc-cCccch-hh--cCCCCCEEeccCC-cccCCch
Confidence            88887 3444321         2357888888888874 444433 22  3888888888775 3444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=2.6e-22  Score=206.88  Aligned_cols=348  Identities=14%  Similarity=0.192  Sum_probs=254.5

Q ss_pred             CCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc
Q 009754           24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH  103 (526)
Q Consensus        24 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  103 (526)
                      ..+++++.|+++++ .+..+|. +..        +++|++|+++++ .+++.+.   ...+++|++|++++|. ++.++.
T Consensus        43 ~~l~~l~~L~l~~~-~i~~l~~-~~~--------l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~  107 (466)
T 1o6v_A           43 TDLDQVTTLQADRL-GIKSIDG-VEY--------LNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADITP  107 (466)
T ss_dssp             HHHHTCCEEECCSS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGG
T ss_pred             hHhccccEEecCCC-CCccCcc-hhh--------hcCCCEEECCCC-ccCCchh---hhccccCCEEECCCCc-cccChh
Confidence            44789999999997 6777774 444        899999999986 4555544   3478999999999984 555555


Q ss_pred             CcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEe
Q 009754          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD  183 (526)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~  183 (526)
                       +..+++|++|+++++               .+..++. +..+++|++|+++++. ++.+.. .    ..+++|++|.+.
T Consensus       108 -~~~l~~L~~L~L~~n---------------~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~----~~l~~L~~L~l~  164 (466)
T 1o6v_A          108 -LANLTNLTGLTLFNN---------------QITDIDP-LKNLTNLNRLELSSNT-ISDISA-L----SGLTSLQQLSFG  164 (466)
T ss_dssp             -GTTCTTCCEEECCSS---------------CCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-G----TTCTTCSEEEEE
T ss_pred             -hcCCCCCCEEECCCC---------------CCCCChH-HcCCCCCCEEECCCCc-cCCChh-h----ccCCcccEeecC
Confidence             778999999999842               2233332 6688999999999875 333221 2    568999999997


Q ss_pred             cCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCC
Q 009754          184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE  263 (526)
Q Consensus       184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  263 (526)
                      ++  .....+   +..+++|++|++++|. +..++           ....+++|+.|+++++. +...+.    +..+++
T Consensus       165 ~~--~~~~~~---~~~l~~L~~L~l~~n~-l~~~~-----------~l~~l~~L~~L~l~~n~-l~~~~~----~~~l~~  222 (466)
T 1o6v_A          165 NQ--VTDLKP---LANLTTLERLDISSNK-VSDIS-----------VLAKLTNLESLIATNNQ-ISDITP----LGILTN  222 (466)
T ss_dssp             ES--CCCCGG---GTTCTTCCEEECCSSC-CCCCG-----------GGGGCTTCSEEECCSSC-CCCCGG----GGGCTT
T ss_pred             Cc--ccCchh---hccCCCCCEEECcCCc-CCCCh-----------hhccCCCCCEEEecCCc-cccccc----ccccCC
Confidence            53  444333   8899999999999984 55543           34568999999999874 444432    557899


Q ss_pred             cceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhh
Q 009754          264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESN  343 (526)
Q Consensus       264 L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~  343 (526)
                      |++|++++| +++..+  .                                ...+++|+.|+++++. ++.++.     .
T Consensus       223 L~~L~l~~n-~l~~~~--~--------------------------------l~~l~~L~~L~l~~n~-l~~~~~-----~  261 (466)
T 1o6v_A          223 LDELSLNGN-QLKDIG--T--------------------------------LASLTNLTDLDLANNQ-ISNLAP-----L  261 (466)
T ss_dssp             CCEEECCSS-CCCCCG--G--------------------------------GGGCTTCSEEECCSSC-CCCCGG-----G
T ss_pred             CCEEECCCC-Ccccch--h--------------------------------hhcCCCCCEEECCCCc-cccchh-----h
Confidence            999999986 444331  1                                1245899999999864 444432     2


Q ss_pred             hhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccccc
Q 009754          344 KAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAK  423 (526)
Q Consensus       344 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~  423 (526)
                      ..+++|+.|++++|. ++.++. +..+++|+.|+++++ .++.++.   ...+++|+.|++++|. ++++..        
T Consensus       262 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~--------  326 (466)
T 1o6v_A          262 SGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP--------  326 (466)
T ss_dssp             TTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG--------
T ss_pred             hcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh--------
Confidence            778999999999874 566654 778899999999996 5666654   4788999999999984 444322        


Q ss_pred             ccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCCC
Q 009754          424 DCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDD  494 (526)
Q Consensus       424 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~~  494 (526)
                       ...+++|+.|++.+| .++.++. ..  .+++|++|++.+|.-....|  ...+++|+.|+++++++...
T Consensus       327 -~~~l~~L~~L~l~~n-~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          327 -VSSLTKLQRLFFYNN-KVSDVSS-LA--NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             -GGGCTTCCEEECCSS-CCCCCGG-GT--TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             -hccCccCCEeECCCC-ccCCchh-hc--cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence             146899999999998 5666642 22  38999999999986544444  44789999999977766543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=1.5e-21  Score=200.59  Aligned_cols=82  Identities=12%  Similarity=0.098  Sum_probs=54.4

Q ss_pred             cCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccC
Q 009754           26 PSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG  104 (526)
Q Consensus        26 l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  104 (526)
                      .++|++|+++++ .+..+ |..+.+        +++|++|+++++.......... ...+++|++|++++|..-...|..
T Consensus        29 ~~~l~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~L~~n~~~~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           29 PAHVNYVDLSLN-SIAELNETSFSR--------LQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDYNQFLQLETGA   98 (455)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTTSS--------CTTCCEEECCCCSTTCEECTTT-TTTCTTCCEEECTTCTTCEECTTT
T ss_pred             CCccCEEEecCC-ccCcCChhHhcc--------CccccEEECcCCcccceECccc-ccccccCCEEeCCCCccCccChhh
Confidence            378899999886 67776 445555        7888888888765433333322 345788888888887533333555


Q ss_pred             cccCCCeeeEEec
Q 009754          105 ILSTPKLHKVQVT  117 (526)
Q Consensus       105 ~~~~~~L~~L~l~  117 (526)
                      +..+++|++|+++
T Consensus        99 ~~~l~~L~~L~L~  111 (455)
T 3v47_A           99 FNGLANLEVLTLT  111 (455)
T ss_dssp             TTTCTTCCEEECT
T ss_pred             ccCcccCCEEeCC
Confidence            6667777777776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=6.2e-22  Score=202.67  Aligned_cols=321  Identities=18%  Similarity=0.120  Sum_probs=145.1

Q ss_pred             cceeEEeeccCceeecccccCCcCCCceEEecccccccEecccccccccccc-----ccccccceeeecccccccccccc
Q 009754            4 LLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENR-----IAFSKLKVLILDYLPTLTSFCLE   78 (526)
Q Consensus         4 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~l~~~~~~   78 (526)
                      ..|+.++++...-...+..++.+++|++|++++|...+.+|..++++.....     -...++++|+++++. +++++. 
T Consensus        11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~-   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE-   88 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS-
T ss_pred             ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC-
Confidence            4577788876665443447999999999999997555577877765210000     000123556665542 333322 


Q ss_pred             CceecCCCccEEEecCCCCccccccCcccCCCeeeEEeccccc---------ccceeeeccccchhhHHhhhhhcCCCCC
Q 009754           79 NYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEE---------GELHHWEGNKLNSTIQKCYEEMIGFRDM  149 (526)
Q Consensus        79 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~L  149 (526)
                          ..++|+.|+++++ .++.+|..   .++|++|+++++.-         +..+...    .+.+..++ .+..+++|
T Consensus        89 ----~~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~----~n~l~~lp-~~~~l~~L  155 (454)
T 1jl5_A           89 ----LPPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVS----NNQLEKLP-ELQNSSFL  155 (454)
T ss_dssp             ----CCTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECC----SSCCSSCC-CCTTCTTC
T ss_pred             ----CcCCCCEEEccCC-cCCccccc---cCCCcEEECCCCccCcccCCCCCCCEEECc----CCCCCCCc-ccCCCCCC
Confidence                1356666666665 34444422   34566666553210         0001111    11222333 35556666


Q ss_pred             cEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCC
Q 009754          150 EYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEH  229 (526)
Q Consensus       150 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  229 (526)
                      ++|+++++. ++.+      + ....+|++|++++| .++.+ |.  ++.+++|++|++++| .++.++.          
T Consensus       156 ~~L~l~~N~-l~~l------p-~~~~~L~~L~L~~n-~l~~l-~~--~~~l~~L~~L~l~~N-~l~~l~~----------  212 (454)
T 1jl5_A          156 KIIDVDNNS-LKKL------P-DLPPSLEFIAAGNN-QLEEL-PE--LQNLPFLTAIYADNN-SLKKLPD----------  212 (454)
T ss_dssp             CEEECCSSC-CSCC------C-CCCTTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSS-CCSSCCC----------
T ss_pred             CEEECCCCc-Cccc------C-CCcccccEEECcCC-cCCcC-cc--ccCCCCCCEEECCCC-cCCcCCC----------
Confidence            666666654 3221      1 12346666666666 34444 22  566666666666666 3433332          


Q ss_pred             CCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhhccc
Q 009754          230 RGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLLAHQ  307 (526)
Q Consensus       230 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~  307 (526)
                         ..++|+.|+++++ .++.++.    +..+++|++|+++++ +++.++  +.+++.++++++.+.+++.         
T Consensus       213 ---~~~~L~~L~l~~n-~l~~lp~----~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~l~~---------  274 (454)
T 1jl5_A          213 ---LPLSLESIVAGNN-ILEELPE----LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPE---------  274 (454)
T ss_dssp             ---CCTTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCC---------
T ss_pred             ---CcCcccEEECcCC-cCCcccc----cCCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccccCc---------
Confidence               1246667776665 3444432    446667777777663 454433  3455555555555444321         


Q ss_pred             cccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCcccc
Q 009754          308 VQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINL  387 (526)
Q Consensus       308 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l  387 (526)
                               .+++|+.|+++++ .++.++.       ..++|+.|+++++. ++.++..   .++|++|+++++ .++.+
T Consensus       275 ---------~~~~L~~L~ls~N-~l~~l~~-------~~~~L~~L~l~~N~-l~~i~~~---~~~L~~L~Ls~N-~l~~l  332 (454)
T 1jl5_A          275 ---------LPQSLTFLDVSEN-IFSGLSE-------LPPNLYYLNASSNE-IRSLCDL---PPSLEELNVSNN-KLIEL  332 (454)
T ss_dssp             ---------CCTTCCEEECCSS-CCSEESC-------CCTTCCEEECCSSC-CSEECCC---CTTCCEEECCSS-CCSCC
T ss_pred             ---------ccCcCCEEECcCC-ccCcccC-------cCCcCCEEECcCCc-CCcccCC---cCcCCEEECCCC-ccccc
Confidence                     1145556666553 2333321       12455555555542 3333211   135555555553 34443


Q ss_pred             ccchhhhhccCCceEEEecc
Q 009754          388 LTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       388 ~~~~~~~~l~~L~~L~i~~c  407 (526)
                      |.     .+++|++|+++++
T Consensus       333 p~-----~~~~L~~L~L~~N  347 (454)
T 1jl5_A          333 PA-----LPPRLERLIASFN  347 (454)
T ss_dssp             CC-----CCTTCCEEECCSS
T ss_pred             cc-----cCCcCCEEECCCC
Confidence            32     1355555655554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=1.5e-21  Score=206.23  Aligned_cols=218  Identities=13%  Similarity=0.111  Sum_probs=152.6

Q ss_pred             CCccceEecCCCccccccccCCC--ccccCCCcceEeeecCCCCcccc---------CcccceeeecCCCCccccchhhh
Q 009754          234 FPKLYGLRLIDLPKLKRFCNFTG--NIIELPELQHLTIQNCPDMETFI---------SNSVVHVTTDNKEPQKLTSEENF  302 (526)
Q Consensus       234 l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~---------~~~L~~L~i~~~~~~~~~~~~~~  302 (526)
                      .++|+.|+++++.--..+|....  ....++.|+.+++..+ .+ .++         ...++.++++++.......    
T Consensus       275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~-~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~----  348 (562)
T 3a79_B          275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ-VF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC----  348 (562)
T ss_dssp             TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC-CC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC----
T ss_pred             cccccEEEEeccEeeccccchhhhcccccchheehhhcccc-ee-ecChhhhhhhhccCcceEEEccCCCcccccC----
Confidence            35899999998753334543320  0034555555555553 33 222         2458888888887654221    


Q ss_pred             hhccccccccccCCCCCCccEEEecCCCCceE-ecccCChhhhhhcccceeEeccCcCcccc---CCCCCCCCCCCEEee
Q 009754          303 LLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-LWKENDESNKAFANLESLEISECSKLQKL---VPPSWHLENLEALEV  378 (526)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~l  378 (526)
                                  ...+++|+.|+++++. ++. ++...    ..+++|+.|+++++ .++.+   |..+..+++|++|++
T Consensus       349 ------------~~~l~~L~~L~l~~n~-l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l  410 (562)
T 3a79_B          349 ------------PPSPSSFTFLNFTQNV-FTDSVFQGC----STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDV  410 (562)
T ss_dssp             ------------CSSCCCCCEEECCSSC-CCTTTTTTC----CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEEC
T ss_pred             ------------ccCCCCceEEECCCCc-cccchhhhh----cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEEC
Confidence                        1356899999999864 443 33222    77899999999997 45544   356788999999999


Q ss_pred             ccccCccc-cccchhhhhccCCceEEEecccCcceeeccCCcccccccccc-cccceeecccccccceecCCCccCCCCC
Q 009754          379 SKCHGLIN-LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVF-KELRYLELYCLPSLTSFCLGNYALEFPS  456 (526)
Q Consensus       379 ~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~  456 (526)
                      +++. ++. ++.. ....+++|++|+++++. ++....          ..+ ++|+.|+++++ .++.+|.+...  +++
T Consensus       411 ~~N~-l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~----------~~l~~~L~~L~L~~N-~l~~ip~~~~~--l~~  474 (562)
T 3a79_B          411 SLNS-LNSHAYDR-TCAWAESILVLNLSSNM-LTGSVF----------RCLPPKVKVLDLHNN-RIMSIPKDVTH--LQA  474 (562)
T ss_dssp             TTSC-CBSCCSSC-CCCCCTTCCEEECCSSC-CCGGGG----------SSCCTTCSEEECCSS-CCCCCCTTTTS--SCC
T ss_pred             CCCc-CCCccChh-hhcCcccCCEEECCCCC-CCcchh----------hhhcCcCCEEECCCC-cCcccChhhcC--CCC
Confidence            9964 555 6653 34678999999999974 332111          123 69999999998 78899887765  999


Q ss_pred             ccEEEEcCCCCceeccCC-CCCCCCcceEEeeccCCC
Q 009754          457 LKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       457 L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~~  492 (526)
                      |++|+++++ +++.+|.. +..+++|+.++++++.+.
T Consensus       475 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          475 LQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             CCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            999999985 77789986 678899999999777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.5e-21  Score=199.93  Aligned_cols=318  Identities=15%  Similarity=0.132  Sum_probs=184.8

Q ss_pred             ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc
Q 009754           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (526)
Q Consensus        20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~   99 (526)
                      ..+++.+++|++|+++++ .+..+| .+..        +++|++|+++++ .+++.+    ...+++|++|++++|. ++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~--------l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N~-l~   98 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNS-SITDMT-GIEK--------LTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSNK-LT   98 (457)
T ss_dssp             EEEHHHHTTCCEEECCSS-CCCCCT-TGGG--------CTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CS
T ss_pred             ccChhHcCCCCEEEccCC-CcccCh-hhcc--------cCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCCC-Cc
Confidence            446777889999999986 677776 4555        788888888875 355543    3467888888888874 55


Q ss_pred             ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccE
Q 009754          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (526)
Q Consensus       100 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~  179 (526)
                      .++  +..+++|++|+++++               .+..++  +..+++|++|+++++. ++.+.      ...+++|++
T Consensus        99 ~~~--~~~l~~L~~L~L~~N---------------~l~~l~--~~~l~~L~~L~l~~N~-l~~l~------l~~l~~L~~  152 (457)
T 3bz5_A           99 NLD--VTPLTKLTYLNCDTN---------------KLTKLD--VSQNPLLTYLNCARNT-LTEID------VSHNTQLTE  152 (457)
T ss_dssp             CCC--CTTCTTCCEEECCSS---------------CCSCCC--CTTCTTCCEEECTTSC-CSCCC------CTTCTTCCE
T ss_pred             eee--cCCCCcCCEEECCCC---------------cCCeec--CCCCCcCCEEECCCCc-cceec------cccCCcCCE
Confidence            554  556777888888732               222222  4566777777777765 33321      145677777


Q ss_pred             EEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccc
Q 009754          180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNII  259 (526)
Q Consensus       180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  259 (526)
                      |++++|..+..+ +   +..+++|++|++++| .++.++            ...+++|+.|+++++ .++.++     +.
T Consensus       153 L~l~~n~~~~~~-~---~~~l~~L~~L~ls~n-~l~~l~------------l~~l~~L~~L~l~~N-~l~~~~-----l~  209 (457)
T 3bz5_A          153 LDCHLNKKITKL-D---VTPQTQLTTLDCSFN-KITELD------------VSQNKLLNRLNCDTN-NITKLD-----LN  209 (457)
T ss_dssp             EECTTCSCCCCC-C---CTTCTTCCEEECCSS-CCCCCC------------CTTCTTCCEEECCSS-CCSCCC-----CT
T ss_pred             EECCCCCccccc-c---cccCCcCCEEECCCC-ccceec------------cccCCCCCEEECcCC-cCCeec-----cc
Confidence            777777655544 3   566777777777776 444442            345677777777765 344431     44


Q ss_pred             cCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccC
Q 009754          260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN  339 (526)
Q Consensus       260 ~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  339 (526)
                      .+++|+.|+++++ +++.++                                   .+.+++|+.|+++++ .++.++.  
T Consensus       210 ~l~~L~~L~Ls~N-~l~~ip-----------------------------------~~~l~~L~~L~l~~N-~l~~~~~--  250 (457)
T 3bz5_A          210 QNIQLTFLDCSSN-KLTEID-----------------------------------VTPLTQLTYFDCSVN-PLTELDV--  250 (457)
T ss_dssp             TCTTCSEEECCSS-CCSCCC-----------------------------------CTTCTTCSEEECCSS-CCSCCCC--
T ss_pred             cCCCCCEEECcCC-cccccC-----------------------------------ccccCCCCEEEeeCC-cCCCcCH--
Confidence            6777777777774 444432                                   123466666766664 3443332  


Q ss_pred             ChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCc
Q 009754          340 DESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVG  419 (526)
Q Consensus       340 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  419 (526)
                          +.+++|+.|+++++              +|+.+++++|..+..+|.    ..+++|+.|++++|+.++.++.....
T Consensus       251 ----~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~  308 (457)
T 3bz5_A          251 ----STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAG  308 (457)
T ss_dssp             ----TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred             ----HHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCCCc
Confidence                33455555544331              344555555544444432    34455666666555555444431111


Q ss_pred             ccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCce
Q 009754          420 EEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMK  469 (526)
Q Consensus       420 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~  469 (526)
                      .........++|+.|+++++ .++.++.  .  .+++|++|+++++ +++
T Consensus       309 L~~L~l~~~~~L~~L~L~~N-~l~~l~l--~--~l~~L~~L~l~~N-~l~  352 (457)
T 3bz5_A          309 ITELDLSQNPKLVYLYLNNT-ELTELDV--S--HNTKLKSLSCVNA-HIQ  352 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTC-CCSCCCC--T--TCTTCSEEECCSS-CCC
T ss_pred             ceEechhhcccCCEEECCCC-ccccccc--c--cCCcCcEEECCCC-CCC
Confidence            11111122356666666654 4555432  2  2777777777663 444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=209.93  Aligned_cols=400  Identities=15%  Similarity=0.159  Sum_probs=245.8

Q ss_pred             eEEeeccCceeecccccCCcCCCceEEecccccccEec-cccccccccccccccccceeeeccccccccccccCceecCC
Q 009754            7 YFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEII-RHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP   85 (526)
Q Consensus         7 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   85 (526)
                      +++|++.......+..+.  ++|++|+++++ .+..++ ..+.+        +++|++|+++++ .+++..+.. ...++
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~~-~~~l~   69 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQN-YISELWTSDILS--------LSKLRILIISHN-RIQYLDISV-FKFNQ   69 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSS-CCCCCCHHHHTT--------CTTCCEEECCSS-CCCEEEGGG-GTTCT
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCC-cccccChhhccc--------cccccEEecCCC-ccCCcChHH-hhccc
Confidence            467888776554333344  89999999997 677775 45555        899999999986 455554433 34689


Q ss_pred             CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhH--HhhhhhcCCCCCcEEEeecCCCCcee
Q 009754           86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ--KCYEEMIGFRDMEYLQLSYFPHLKEI  163 (526)
Q Consensus        86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~~  163 (526)
                      +|++|+++++ .++.+|..  .+++|++|++++               +.+.  .++..+..+++|++|+++++. ++..
T Consensus        70 ~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~---------------N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~  130 (520)
T 2z7x_B           70 ELEYLDLSHN-KLVKISCH--PTVNLKHLDLSF---------------NAFDALPICKEFGNMSQLKFLGLSTTH-LEKS  130 (520)
T ss_dssp             TCCEEECCSS-CCCEEECC--CCCCCSEEECCS---------------SCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG
T ss_pred             CCCEEecCCC-ceeecCcc--ccCCccEEeccC---------------CccccccchhhhccCCcceEEEecCcc-cchh
Confidence            9999999998 57788876  789999999983               2333  245677889999999999976 3321


Q ss_pred             ccCCCCCcCCCCCc--cEEEEecCCC--cccCCChHHHhcCC-CCCeeeeccccccchhccccccccccCCCCCCCCccc
Q 009754          164 WHGQALPVSFFNNL--ARLVVDDCTN--MSSAIPANLLRCLN-NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLY  238 (526)
Q Consensus       164 ~~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~  238 (526)
                      ..      ..+++|  ++|++++|..  .... |.. +..+. ....++++++.....++..         ....+++|+
T Consensus       131 ~~------~~l~~L~L~~L~l~~n~l~~~~~~-~~~-l~~l~~~~l~l~l~~n~~~~~~~~~---------~~~~l~~L~  193 (520)
T 2z7x_B          131 SV------LPIAHLNISKVLLVLGETYGEKED-PEG-LQDFNTESLHIVFPTNKEFHFILDV---------SVKTVANLE  193 (520)
T ss_dssp             GG------GGGTTSCEEEEEEEECTTTTSSCC-TTT-TTTCCEEEEEEECCSSSCCCCCCCC---------CCTTCSEEE
T ss_pred             hc------cccccceeeEEEeecccccccccc-ccc-ccccccceEEEEeccCcchhhhhhh---------hhhccccee
Confidence            11      346677  9999998854  2221 221 23322 1112333333222222110         223445555


Q ss_pred             eEecCCCcc------ccccccCCCccccCC---------------------------CcceEeeecCCCCcc-cc-----
Q 009754          239 GLRLIDLPK------LKRFCNFTGNIIELP---------------------------ELQHLTIQNCPDMET-FI-----  279 (526)
Q Consensus       239 ~L~l~~~~~------l~~~~~~~~~~~~~~---------------------------~L~~L~l~~c~~l~~-~~-----  279 (526)
                      .|+++++..      +.....   .+..++                           +|++|++++| ++.+ .+     
T Consensus       194 ~L~l~~n~~~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~  269 (520)
T 2z7x_B          194 LSNIKCVLEDNKCSYFLSILA---KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV-KLQGQLDFRDFD  269 (520)
T ss_dssp             ECCEEECCSTTTTHHHHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE-EEESCCCCCCCC
T ss_pred             eccccccccccccceeecchh---hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc-cccCccccchhh
Confidence            555444320      000000   023334                           5555555553 2221 11     


Q ss_pred             -----CcccceeeecCCCCccccc--hhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhccccee
Q 009754          280 -----SNSVVHVTTDNKEPQKLTS--EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESL  352 (526)
Q Consensus       280 -----~~~L~~L~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L  352 (526)
                           ...++.++++++.. .++.  .....             .-++|+.|+++++. +..++.   +  ..+++|+.|
T Consensus       270 ~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~-------------~~~~L~~L~l~~n~-l~~~~~---~--~~l~~L~~L  329 (520)
T 2z7x_B          270 YSGTSLKALSIHQVVSDVF-GFPQSYIYEIF-------------SNMNIKNFTVSGTR-MVHMLC---P--SKISPFLHL  329 (520)
T ss_dssp             CCSCCCCEEEEEEEEECCC-CSCTHHHHHHH-------------HTCCCSEEEEESSC-CCCCCC---C--SSCCCCCEE
T ss_pred             cccccCceeEeccccccce-ecchhhhhccc-------------ccCceeEEEcCCCc-cccccc---h--hhCCcccEE
Confidence                 12233334444333 2210  00000             01468888888754 333221   1  567899999


Q ss_pred             EeccCcCccccCCCCCCCCCCCEEeeccccCccccccc-hhhhhccCCceEEEecccCcce-eeccCCcccccccccccc
Q 009754          353 EISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTF-STSESLVNLGRMMIADCKMIEQ-IIQLQVGEEAKDCNVFKE  430 (526)
Q Consensus       353 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~  430 (526)
                      ++++|..-..+|..+..+++|++|+++++ .++.++.. ..+..+++|++|+++++. ++. ++.   +    ....+++
T Consensus       330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~---~----~~~~l~~  400 (520)
T 2z7x_B          330 DFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK---G----DCSWTKS  400 (520)
T ss_dssp             ECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG---C----SCCCCTT
T ss_pred             EeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCccccc---c----hhccCcc
Confidence            99998654557888899999999999996 45543321 134788999999999874 444 432   1    1234689


Q ss_pred             cceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754          431 LRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD  493 (526)
Q Consensus       431 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~  493 (526)
                      |+.|+++++.--..++...    .++|++|++++| +++.+|.....+++|+.|+++++++..
T Consensus       401 L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCL----PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSC----CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCEEECcCCCCCcchhhhh----cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCc
Confidence            9999999985334444321    279999999986 777899876689999999998777753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=2.1e-21  Score=198.95  Aligned_cols=343  Identities=11%  Similarity=0.075  Sum_probs=230.9

Q ss_pred             ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754            3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (526)
                      ++.|+.|+++.+... .++.++.+++|++|+++++ .+..+|  ++.        +++|++|+++++. ++..+    ..
T Consensus        41 l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~--------l~~L~~L~Ls~N~-l~~~~----~~  103 (457)
T 3bz5_A           41 LATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSN-NITTLD--LSQ--------NTNLTYLACDSNK-LTNLD----VT  103 (457)
T ss_dssp             HTTCCEEECCSSCCC-CCTTGGGCTTCSEEECCSS-CCSCCC--CTT--------CTTCSEEECCSSC-CSCCC----CT
T ss_pred             cCCCCEEEccCCCcc-cChhhcccCCCCEEEccCC-cCCeEc--ccc--------CCCCCEEECcCCC-Cceee----cC
Confidence            578999999987544 4678999999999999997 688875  555        8999999999864 55553    34


Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+++|++|+++++ .++.++  +..+++|++|+++++               .+..+  .+..+++|++|+++++..+..
T Consensus       104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N---------------~l~~l--~l~~l~~L~~L~l~~n~~~~~  163 (457)
T 3bz5_A          104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN---------------TLTEI--DVSHNTQLTELDCHLNKKITK  163 (457)
T ss_dssp             TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS---------------CCSCC--CCTTCTTCCEEECTTCSCCCC
T ss_pred             CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC---------------cccee--ccccCCcCCEEECCCCCcccc
Confidence            6999999999999 566665  677899999999842               22222  256789999999999875655


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      +.  .    ..+++|++|++++| .++.+ +   +..+++|++|++++| .++.+            .++.+++|+.|++
T Consensus       164 ~~--~----~~l~~L~~L~ls~n-~l~~l-~---l~~l~~L~~L~l~~N-~l~~~------------~l~~l~~L~~L~L  219 (457)
T 3bz5_A          164 LD--V----TPQTQLTTLDCSFN-KITEL-D---VSQNKLLNRLNCDTN-NITKL------------DLNQNIQLTFLDC  219 (457)
T ss_dssp             CC--C----TTCTTCCEEECCSS-CCCCC-C---CTTCTTCCEEECCSS-CCSCC------------CCTTCTTCSEEEC
T ss_pred             cc--c----ccCCcCCEEECCCC-cccee-c---cccCCCCCEEECcCC-cCCee------------ccccCCCCCEEEC
Confidence            42  2    45899999999998 56665 4   678999999999998 45554            3457899999999


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecCCCCccccCc---ccceeeecCCCCccccchhhhhhccccccccccCCCCC
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISN---SVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFP  319 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (526)
                      +++ .++.++     +..+++|+.|+++++ +++..++.   .++.+.+++                            .
T Consensus       220 s~N-~l~~ip-----~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~l~~----------------------------n  264 (457)
T 3bz5_A          220 SSN-KLTEID-----VTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLHCIQ----------------------------T  264 (457)
T ss_dssp             CSS-CCSCCC-----CTTCTTCSEEECCSS-CCSCCCCTTCTTCCEEECTT----------------------------C
T ss_pred             cCC-cccccC-----ccccCCCCEEEeeCC-cCCCcCHHHCCCCCEEeccC----------------------------C
Confidence            996 456653     458899999999995 67665532   222332221                            4


Q ss_pred             CccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC--------CCCCCCCCEEeeccccCccccccch
Q 009754          320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP--------SWHLENLEALEVSKCHGLINLLTFS  391 (526)
Q Consensus       320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--------~~~l~~L~~L~l~~c~~l~~l~~~~  391 (526)
                      +|+.|+++++.....++.      +.+++|+.|++++|+.++.+|..        +...++|++|+++++ .++.++   
T Consensus       265 ~L~~L~l~~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~---  334 (457)
T 3bz5_A          265 DLLEIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD---  334 (457)
T ss_dssp             CCSCCCCTTCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC---
T ss_pred             CCCEEECCCCccCCcccc------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc---
Confidence            666777777665665542      55688888888888766655531        233345555555543 333332   


Q ss_pred             hhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceec
Q 009754          392 TSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIF  471 (526)
Q Consensus       392 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~l  471 (526)
                       +..+++|+.|+++++ +++               .++.|..|.+... .+...+    .  +..|+.+++++..--..+
T Consensus       335 -l~~l~~L~~L~l~~N-~l~---------------~l~~L~~L~l~~n-~l~g~~----~--~~~l~~l~l~~N~l~g~i  390 (457)
T 3bz5_A          335 -VSHNTKLKSLSCVNA-HIQ---------------DFSSVGKIPALNN-NFEAEG----Q--TITMPKETLTNNSLTIAV  390 (457)
T ss_dssp             -CTTCTTCSEEECCSS-CCC---------------BCTTGGGSSGGGT-SEEEEE----E--EEECCCBCCBTTBEEEEC
T ss_pred             -cccCCcCcEEECCCC-CCC---------------CccccccccccCC-cEEecc----e--eeecCccccccCcEEEEc
Confidence             244555666666553 222               1344555554442 232221    1  455667777663323367


Q ss_pred             cCCC
Q 009754          472 SQGV  475 (526)
Q Consensus       472 p~~~  475 (526)
                      |..+
T Consensus       391 p~~~  394 (457)
T 3bz5_A          391 SPDL  394 (457)
T ss_dssp             CTTC
T ss_pred             ChhH
Confidence            7643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=1.1e-21  Score=194.33  Aligned_cols=309  Identities=16%  Similarity=0.202  Sum_probs=214.8

Q ss_pred             cccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCc
Q 009754           19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM   98 (526)
Q Consensus        19 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l   98 (526)
                      .+..+..+++|++|+++++ .+..++. +..        +++|++|+++++ .+++.+.   ...+++|++|++++| .+
T Consensus        36 ~~~~~~~l~~L~~L~l~~~-~i~~~~~-~~~--------~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i  100 (347)
T 4fmz_A           36 DVVTQEELESITKLVVAGE-KVASIQG-IEY--------LTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KI  100 (347)
T ss_dssp             SEECHHHHTTCSEEECCSS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CC
T ss_pred             CcccchhcccccEEEEeCC-ccccchh-hhh--------cCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cc
Confidence            3455667889999999986 6777764 444        888999999876 4555543   346889999999988 46


Q ss_pred             cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCcc
Q 009754           99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA  178 (526)
Q Consensus        99 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~  178 (526)
                      +.++ .+..+++|++|+++++               .+..++. +..+++|+.|+++++..+..... .    ..+++|+
T Consensus       101 ~~~~-~~~~l~~L~~L~l~~n---------------~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~----~~l~~L~  158 (347)
T 4fmz_A          101 TDIS-ALQNLTNLRELYLNED---------------NISDISP-LANLTKMYSLNLGANHNLSDLSP-L----SNMTGLN  158 (347)
T ss_dssp             CCCG-GGTTCTTCSEEECTTS---------------CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-G----TTCTTCC
T ss_pred             cCch-HHcCCCcCCEEECcCC---------------cccCchh-hccCCceeEEECCCCCCcccccc-h----hhCCCCc
Confidence            6654 4667888888888832               2233333 56788888888888865553322 2    4578888


Q ss_pred             EEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCcc
Q 009754          179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI  258 (526)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  258 (526)
                      +|++++|. +....+   +..+++|++|++++| .+..++.           ...+++|+.|+++++ .+..++.    +
T Consensus       159 ~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-----------~~~l~~L~~L~l~~n-~l~~~~~----~  217 (347)
T 4fmz_A          159 YLTVTESK-VKDVTP---IANLTDLYSLSLNYN-QIEDISP-----------LASLTSLHYFTAYVN-QITDITP----V  217 (347)
T ss_dssp             EEECCSSC-CCCCGG---GGGCTTCSEEECTTS-CCCCCGG-----------GGGCTTCCEEECCSS-CCCCCGG----G
T ss_pred             EEEecCCC-cCCchh---hccCCCCCEEEccCC-ccccccc-----------ccCCCccceeecccC-CCCCCch----h
Confidence            88888874 444433   778888999998887 4544432           345788888888886 3444332    5


Q ss_pred             ccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEeccc
Q 009754          259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKE  338 (526)
Q Consensus       259 ~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~  338 (526)
                      ..+++|++|++++| +++..++                                  ...+++|+.|+++++ .++.++ .
T Consensus       218 ~~~~~L~~L~l~~n-~l~~~~~----------------------------------~~~l~~L~~L~l~~n-~l~~~~-~  260 (347)
T 4fmz_A          218 ANMTRLNSLKIGNN-KITDLSP----------------------------------LANLSQLTWLEIGTN-QISDIN-A  260 (347)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG----------------------------------GTTCTTCCEEECCSS-CCCCCG-G
T ss_pred             hcCCcCCEEEccCC-ccCCCcc----------------------------------hhcCCCCCEEECCCC-ccCCCh-h
Confidence            57888888888885 4444321                                  134589999999886 455442 1


Q ss_pred             CChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCC
Q 009754          339 NDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQV  418 (526)
Q Consensus       339 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  418 (526)
                          ...+++|+.|++++| .++.+ +.+..+++|++|++++| .+...+.. .+..+++|++|++++|+ ++.+..   
T Consensus       261 ----~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~---  328 (347)
T 4fmz_A          261 ----VKDLTKLKMLNVGSN-QISDI-SVLNNLSQLNSLFLNNN-QLGNEDME-VIGGLTNLTTLFLSQNH-ITDIRP---  328 (347)
T ss_dssp             ----GTTCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCGGGHH-HHHTCTTCSEEECCSSS-CCCCGG---
T ss_pred             ----HhcCCCcCEEEccCC-ccCCC-hhhcCCCCCCEEECcCC-cCCCcChh-HhhccccCCEEEccCCc-cccccC---
Confidence                277889999999987 46666 35778899999999997 45554443 34678999999999985 544422   


Q ss_pred             cccccccccccccceeeccccc
Q 009754          419 GEEAKDCNVFKELRYLELYCLP  440 (526)
Q Consensus       419 ~~~~~~~~~~~~L~~L~l~~c~  440 (526)
                            ...+++|++|++++++
T Consensus       329 ------~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          329 ------LASLSKMDSADFANQV  344 (347)
T ss_dssp             ------GGGCTTCSEESSSCC-
T ss_pred             ------hhhhhccceeehhhhc
Confidence                  1458999999998874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=7.3e-21  Score=195.56  Aligned_cols=376  Identities=12%  Similarity=0.129  Sum_probs=232.6

Q ss_pred             eEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc-cCcccCC
Q 009754           31 NLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-HGILSTP  109 (526)
Q Consensus        31 ~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~  109 (526)
                      .++.+++ .+..+|. +          .++|++|+++++ .+++..... ...+++|++|+++++.....++ ..+..++
T Consensus        14 ~~~c~~~-~l~~lp~-l----------~~~l~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~   79 (455)
T 3v47_A           14 NAICINR-GLHQVPE-L----------PAHVNYVDLSLN-SIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLS   79 (455)
T ss_dssp             EEECCSS-CCSSCCC-C----------CTTCCEEECCSS-CCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred             ccCcCCC-CcccCCC-C----------CCccCEEEecCC-ccCcCChhH-hccCccccEEECcCCcccceECcccccccc
Confidence            4555553 6677775 2          468999999975 455554433 4579999999999996544553 4466789


Q ss_pred             CeeeEEecccccccceeeeccccchhhHHh-hhhhcCCCCCcEEEeecCCCCce-eccCCCCCcCCCCCccEEEEecCCC
Q 009754          110 KLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKE-IWHGQALPVSFFNNLARLVVDDCTN  187 (526)
Q Consensus       110 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~c~~  187 (526)
                      +|++|++++               +.+..+ +..+..+++|++|+++++. ++. .....  ....+++|++|++++|. 
T Consensus        80 ~L~~L~Ls~---------------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~~~l~~L~~L~L~~n~-  140 (455)
T 3v47_A           80 SLIILKLDY---------------NQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGN--FFKPLTSLEMLVLRDNN-  140 (455)
T ss_dssp             TCCEEECTT---------------CTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSS--TTTTCTTCCEEECCSSB-
T ss_pred             cCCEEeCCC---------------CccCccChhhccCcccCCEEeCCCCC-CCccccCcc--cccCcccCCEEECCCCc-
Confidence            999999983               233333 5667788999999999886 332 11110  01457899999999984 


Q ss_pred             cccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCC--CCccceEecCCCccccccccCCC------ccc
Q 009754          188 MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPL--FPKLYGLRLIDLPKLKRFCNFTG------NII  259 (526)
Q Consensus       188 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~l~~~~~~~~------~~~  259 (526)
                      ++.+.+...+..+++|++|++++|. +..++..         ....  .++|+.|+++++. +..++....      ...
T Consensus       141 l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~  209 (455)
T 3v47_A          141 IKKIQPASFFLNMRRFHVLDLTFNK-VKSICEE---------DLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPF  209 (455)
T ss_dssp             CCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTT---------TSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTT
T ss_pred             cCccCcccccCCCCcccEEeCCCCc-ccccChh---------hhhccccccccccccccCc-ccccchhhcccccccccc
Confidence            5555465557889999999999884 4333210         1222  2688889888864 343322110      123


Q ss_pred             cCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE-----
Q 009754          260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-----  334 (526)
Q Consensus       260 ~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----  334 (526)
                      .+++|++|++++| ++....+..+.                             .....++|+.|+++++.....     
T Consensus       210 ~~~~L~~L~Ls~n-~l~~~~~~~~~-----------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~  259 (455)
T 3v47_A          210 KNTSITTLDLSGN-GFKESMAKRFF-----------------------------DAIAGTKIQSLILSNSYNMGSSFGHT  259 (455)
T ss_dssp             TTCEEEEEECTTS-CCCHHHHHHHH-----------------------------HHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred             ccceeeeEecCCC-cccccchhhhh-----------------------------ccccccceeeEeeccccccccccchh
Confidence            5578888888885 44432211100                             001124556666554422111     


Q ss_pred             ----ecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCc
Q 009754          335 ----LWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI  410 (526)
Q Consensus       335 ----l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l  410 (526)
                          .....+. ....++|+.|+++++......|..+..+++|++|+++++ .+..++.. .+..+++|++|+++++ .+
T Consensus       260 ~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l  335 (455)
T 3v47_A          260 NFKDPDNFTFK-GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDN-AFWGLTHLLKLNLSQN-FL  335 (455)
T ss_dssp             SSCCCCTTTTG-GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CC
T ss_pred             hhccCcccccc-cccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChh-HhcCcccCCEEECCCC-cc
Confidence                1100010 022367888888887654455667777888888888875 45555443 2366788888888876 45


Q ss_pred             ceeeccCCcccccccccccccceeecccccccceec-CCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEeec
Q 009754          411 EQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFC-LGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTE  488 (526)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~  488 (526)
                      +.+...       ....+++|++|+++++ .++.+. .....  +++|++|+++++ +++.+|.. +..+++|+.|++++
T Consensus       336 ~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          336 GSIDSR-------MFENLDKLEVLDLSYN-HIRALGDQSFLG--LPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             CEECGG-------GGTTCTTCCEEECCSS-CCCEECTTTTTT--CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcChh-------HhcCcccCCEEECCCC-cccccChhhccc--cccccEEECCCC-ccccCCHhHhccCCcccEEEccC
Confidence            544320       1234688888888887 456553 33333  788888888874 56666653 45678888888877


Q ss_pred             cCCCCCc
Q 009754          489 EEKDDDE  495 (526)
Q Consensus       489 ~~~~~~~  495 (526)
                      +++....
T Consensus       405 N~l~~~~  411 (455)
T 3v47_A          405 NPWDCSC  411 (455)
T ss_dssp             SCBCCCT
T ss_pred             CCcccCC
Confidence            7766443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=1.2e-20  Score=186.88  Aligned_cols=302  Identities=14%  Similarity=0.201  Sum_probs=225.8

Q ss_pred             ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754            3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (526)
                      +++++.++++++... .++.++.+++|++|++++| .+..++. +..        +++|++|++.++ .+++++.   ..
T Consensus        43 l~~L~~L~l~~~~i~-~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~--------l~~L~~L~L~~n-~i~~~~~---~~  107 (347)
T 4fmz_A           43 LESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGN-QITDISP-LSN--------LVKLTNLYIGTN-KITDISA---LQ  107 (347)
T ss_dssp             HTTCSEEECCSSCCC-CCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSS-CCCCCGG---GT
T ss_pred             cccccEEEEeCCccc-cchhhhhcCCccEEEccCC-ccccchh-hhc--------CCcCCEEEccCC-cccCchH---Hc
Confidence            578999999986654 4677999999999999997 7888876 555        899999999986 4555432   45


Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+++|++|++++|. ++.++. +..+++|++|+++++.              .... ...+..+++|++|+++++. +..
T Consensus       108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~--------------~~~~-~~~~~~l~~L~~L~l~~~~-~~~  169 (347)
T 4fmz_A          108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANH--------------NLSD-LSPLSNMTGLNYLTVTESK-VKD  169 (347)
T ss_dssp             TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCT--------------TCCC-CGGGTTCTTCCEEECCSSC-CCC
T ss_pred             CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCC--------------Cccc-ccchhhCCCCcEEEecCCC-cCC
Confidence            79999999999984 666654 6779999999999532              1122 2236688999999999986 332


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      ... .    ..+++|++|++++|. ++.+.+   +..+++|++|++++| .+..++.           ...+++|+.|++
T Consensus       170 ~~~-~----~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-----------~~~~~~L~~L~l  228 (347)
T 4fmz_A          170 VTP-I----ANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN-QITDITP-----------VANMTRLNSLKI  228 (347)
T ss_dssp             CGG-G----GGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG-----------GGGCTTCCEEEC
T ss_pred             chh-h----ccCCCCCEEEccCCc-cccccc---ccCCCccceeecccC-CCCCCch-----------hhcCCcCCEEEc
Confidence            221 2    568999999999984 555533   789999999999998 4554432           346899999999


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCcc
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR  322 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  322 (526)
                      +++ .++.++.    +..+++|++|++++| +++..+  .                                ...+++|+
T Consensus       229 ~~n-~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~--~--------------------------------~~~l~~L~  268 (347)
T 4fmz_A          229 GNN-KITDLSP----LANLSQLTWLEIGTN-QISDIN--A--------------------------------VKDLTKLK  268 (347)
T ss_dssp             CSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCCG--G--------------------------------GTTCTTCC
T ss_pred             cCC-ccCCCcc----hhcCCCCCEEECCCC-ccCCCh--h--------------------------------HhcCCCcC
Confidence            997 4555543    568999999999996 444431  1                                13458999


Q ss_pred             EEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceE
Q 009754          323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRM  402 (526)
Q Consensus       323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L  402 (526)
                      .|+++++ .++.++     ....+++|+.|++++|......+..+..+++|++|++++|+ ++.+++   ...+++|++|
T Consensus       269 ~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L  338 (347)
T 4fmz_A          269 MLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSA  338 (347)
T ss_dssp             EEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEE
T ss_pred             EEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhcccee
Confidence            9999986 455542     12788999999999986444445567788999999999975 666654   4678999999


Q ss_pred             EEeccc
Q 009754          403 MIADCK  408 (526)
Q Consensus       403 ~i~~c~  408 (526)
                      ++++|+
T Consensus       339 ~l~~N~  344 (347)
T 4fmz_A          339 DFANQV  344 (347)
T ss_dssp             SSSCC-
T ss_pred             ehhhhc
Confidence            998874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=8.4e-21  Score=191.02  Aligned_cols=305  Identities=14%  Similarity=0.128  Sum_probs=223.8

Q ss_pred             CcCCCceEEecccccccEecccc-ccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc-
Q 009754           25 IPSSLVNLNVSRCDKIEEIIRHV-GEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-  102 (526)
Q Consensus        25 ~l~~L~~L~L~~c~~l~~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-  102 (526)
                      .+++++.|+++++ .++.+|..+ .+        +++|++|++.++. +++..... ...+++|++|+++++. ++.++ 
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~~~~--------l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~  110 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAALLDS--------FRQVELLNLNDLQ-IEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPP  110 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHHHHH--------CCCCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CCCCCT
T ss_pred             ccCCceEEEecCC-chhhCChhHhcc--------cccCcEEECCCCc-ccccChhh-ccCCCCcCEEECCCCC-CCcCCH
Confidence            4799999999996 799998763 33        8899999999864 55554433 3468999999999985 55554 


Q ss_pred             cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhh-hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEE
Q 009754          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV  181 (526)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  181 (526)
                      ..+..+++|++|++++               +.+..++.. +..+++|++|+++++. ++.+....   ...+++|++|+
T Consensus       111 ~~~~~l~~L~~L~L~~---------------n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~  171 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLER---------------NDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT---FQATTSLQNLQ  171 (390)
T ss_dssp             TTTTTCTTCCEEECCS---------------SCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT---TSSCTTCCEEE
T ss_pred             HHhcCCCCCCEEECCC---------------CccCcCCHHHhcCCCCCcEEECCCCc-cCccChhh---ccCCCCCCEEE
Confidence            4467799999999983               344456554 4678999999999886 44332111   14579999999


Q ss_pred             EecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccC
Q 009754          182 VDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL  261 (526)
Q Consensus       182 l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  261 (526)
                      +++|. ++.+ +   +..+++|++|++++| .++.++              ..++|+.|+++++ .+..++..     .+
T Consensus       172 l~~n~-l~~~-~---~~~l~~L~~L~l~~n-~l~~~~--------------~~~~L~~L~l~~n-~l~~~~~~-----~~  225 (390)
T 3o6n_A          172 LSSNR-LTHV-D---LSLIPSLFHANVSYN-LLSTLA--------------IPIAVEELDASHN-SINVVRGP-----VN  225 (390)
T ss_dssp             CCSSC-CSBC-C---GGGCTTCSEEECCSS-CCSEEE--------------CCSSCSEEECCSS-CCCEEECC-----CC
T ss_pred             CCCCc-CCcc-c---cccccccceeecccc-cccccC--------------CCCcceEEECCCC-eeeecccc-----cc
Confidence            99984 5544 3   678999999999988 444432              3468999999986 45555332     46


Q ss_pred             CCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCCh
Q 009754          262 PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE  341 (526)
Q Consensus       262 ~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~  341 (526)
                      ++|+.|+++++ ++++.+  .                                ...+++|+.|+++++ .++.+....+ 
T Consensus       226 ~~L~~L~l~~n-~l~~~~--~--------------------------------l~~l~~L~~L~Ls~n-~l~~~~~~~~-  268 (390)
T 3o6n_A          226 VELTILKLQHN-NLTDTA--W--------------------------------LLNYPGLVEVDLSYN-ELEKIMYHPF-  268 (390)
T ss_dssp             SSCCEEECCSS-CCCCCG--G--------------------------------GGGCTTCSEEECCSS-CCCEEESGGG-
T ss_pred             ccccEEECCCC-CCcccH--H--------------------------------HcCCCCccEEECCCC-cCCCcChhHc-
Confidence            78999999985 444321  1                                124589999999986 4555543333 


Q ss_pred             hhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccc
Q 009754          342 SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEE  421 (526)
Q Consensus       342 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  421 (526)
                        ..+++|+.|+++++ .++.++.....+++|++|+++++ .+..++..  ...+++|++|++++++ ++.+..      
T Consensus       269 --~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~~------  335 (390)
T 3o6n_A          269 --VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLKL------  335 (390)
T ss_dssp             --TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCCC------
T ss_pred             --cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeCc------
Confidence              77899999999987 57778777788899999999997 57776652  4678999999999874 555432      


Q ss_pred             ccccccccccceeeccccc
Q 009754          422 AKDCNVFKELRYLELYCLP  440 (526)
Q Consensus       422 ~~~~~~~~~L~~L~l~~c~  440 (526)
                          ..+++|+.|++++++
T Consensus       336 ----~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          336 ----STHHTLKNLTLSHND  350 (390)
T ss_dssp             ----CTTCCCSEEECCSSC
T ss_pred             ----hhhccCCEEEcCCCC
Confidence                458999999998874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=3.5e-20  Score=186.45  Aligned_cols=305  Identities=14%  Similarity=0.139  Sum_probs=219.6

Q ss_pred             ccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc-CcccCCCeeeEEecccccccceeeeccccchhh
Q 009754           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI  136 (526)
Q Consensus        58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  136 (526)
                      +++++.|++.+. .++.++... ...+++|+.|+++++. ++.++. .+..+++|++|++++               +.+
T Consensus        44 l~~l~~l~l~~~-~l~~l~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~---------------n~l  105 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKLPAAL-LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGF---------------NAI  105 (390)
T ss_dssp             GCCCSEEEEESC-EESEECTHH-HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCS---------------SCC
T ss_pred             cCCceEEEecCC-chhhCChhH-hcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCC---------------CCC
Confidence            789999999874 466665442 3468999999999985 565554 667799999999983               233


Q ss_pred             HHhh-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccc
Q 009754          137 QKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE  215 (526)
Q Consensus       137 ~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~  215 (526)
                      ..++ ..+..+++|++|+++++. ++.++...   ...+++|++|++++|. ++.+++ ..+..+++|++|++++| .++
T Consensus       106 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~  178 (390)
T 3o6n_A          106 RYLPPHVFQNVPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSN-RLT  178 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCBCCT-TTTSSCTTCCEEECCSS-CCS
T ss_pred             CcCCHHHhcCCCCCCEEECCCCc-cCcCCHHH---hcCCCCCcEEECCCCc-cCccCh-hhccCCCCCCEEECCCC-cCC
Confidence            3443 446788999999999886 44433221   1357899999999984 555533 33788999999999998 455


Q ss_pred             hhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCcc
Q 009754          216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK  295 (526)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~  295 (526)
                      .+            ....+++|+.|+++++ .+..       +...++|+.|+++++ ++...+..              
T Consensus       179 ~~------------~~~~l~~L~~L~l~~n-~l~~-------~~~~~~L~~L~l~~n-~l~~~~~~--------------  223 (390)
T 3o6n_A          179 HV------------DLSLIPSLFHANVSYN-LLST-------LAIPIAVEELDASHN-SINVVRGP--------------  223 (390)
T ss_dssp             BC------------CGGGCTTCSEEECCSS-CCSE-------EECCSSCSEEECCSS-CCCEEECC--------------
T ss_pred             cc------------ccccccccceeecccc-cccc-------cCCCCcceEEECCCC-eeeecccc--------------
Confidence            44            3356899999999885 3343       334568899999885 45443211              


Q ss_pred             ccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCE
Q 009754          296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEA  375 (526)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  375 (526)
                                           .+++|+.|+++++. ++..+     ....+++|+.|+++++..-...|..+..+++|++
T Consensus       224 ---------------------~~~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          224 ---------------------VNVELTILKLQHNN-LTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             ---------------------CCSSCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             ---------------------ccccccEEECCCCC-CcccH-----HHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence                                 23789999999863 44432     2278899999999998544444677888999999


Q ss_pred             EeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCC
Q 009754          376 LEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFP  455 (526)
Q Consensus       376 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  455 (526)
                      |+++++ .++.++.  ....+++|++|++++| .++.++.        ....+++|+.|++.++ .++.++..    .++
T Consensus       277 L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~N-~i~~~~~~----~~~  339 (390)
T 3o6n_A          277 LYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHN-SIVTLKLS----THH  339 (390)
T ss_dssp             EECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSS-CCCCCCCC----TTC
T ss_pred             EECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCc--------cccccCcCCEEECCCC-ccceeCch----hhc
Confidence            999995 6777665  3367899999999998 4655543        1235799999999997 47777643    289


Q ss_pred             CccEEEEcCCC
Q 009754          456 SLKQVVVRQCP  466 (526)
Q Consensus       456 ~L~~L~l~~C~  466 (526)
                      +|++|++.+++
T Consensus       340 ~L~~L~l~~N~  350 (390)
T 3o6n_A          340 TLKNLTLSHND  350 (390)
T ss_dssp             CCSEEECCSSC
T ss_pred             cCCEEEcCCCC
Confidence            99999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=8.6e-20  Score=188.75  Aligned_cols=298  Identities=19%  Similarity=0.219  Sum_probs=214.1

Q ss_pred             CcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc
Q 009754           25 IPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH  103 (526)
Q Consensus        25 ~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  103 (526)
                      ..+++++|+|+++ .+..++. .+.+        +++|++|++.++ .++...... ...+++|+.|+++++ .++.++.
T Consensus        30 ~~~~l~~L~L~~n-~l~~~~~~~~~~--------l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~   97 (477)
T 2id5_A           30 IPTETRLLDLGKN-RIKTLNQDEFAS--------FPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-RLKLIPL   97 (477)
T ss_dssp             CCTTCSEEECCSS-CCCEECTTTTTT--------CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCT
T ss_pred             CCCCCcEEECCCC-ccceECHhHccC--------CCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-cCCccCc
Confidence            3578999999996 7888854 5555        899999999975 455554443 346899999999998 4677776


Q ss_pred             C-cccCCCeeeEEecccccccceeeeccccchhhHHh-hhhhcCCCCCcEEEeecCCCCceecc-CCCCCcCCCCCccEE
Q 009754          104 G-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKEIWH-GQALPVSFFNNLARL  180 (526)
Q Consensus       104 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L  180 (526)
                      . +..+++|++|++++               +.+..+ +..+..+++|+.|+++++. ++.+.. ..    ..+++|++|
T Consensus        98 ~~~~~l~~L~~L~Ls~---------------n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~----~~l~~L~~L  157 (477)
T 2id5_A           98 GVFTGLSNLTKLDISE---------------NKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAF----SGLNSLEQL  157 (477)
T ss_dssp             TSSTTCTTCCEEECTT---------------SCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSS----TTCTTCCEE
T ss_pred             ccccCCCCCCEEECCC---------------CccccCChhHccccccCCEEECCCCc-cceeChhhc----cCCCCCCEE
Confidence            5 45689999999983               222222 3456678999999999876 443322 22    457899999


Q ss_pred             EEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCcccc
Q 009754          181 VVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIE  260 (526)
Q Consensus       181 ~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  260 (526)
                      ++++| .++.+ +...+..+++|+.|++++| .+..++..         .+..+++|+.|+++++..+..++..   ...
T Consensus       158 ~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~i~~~~~~---------~~~~l~~L~~L~l~~~~~~~~~~~~---~~~  222 (477)
T 2id5_A          158 TLEKC-NLTSI-PTEALSHLHGLIVLRLRHL-NINAIRDY---------SFKRLYRLKVLEISHWPYLDTMTPN---CLY  222 (477)
T ss_dssp             EEESC-CCSSC-CHHHHTTCTTCCEEEEESC-CCCEECTT---------CSCSCTTCCEEEEECCTTCCEECTT---TTT
T ss_pred             ECCCC-cCccc-ChhHhcccCCCcEEeCCCC-cCcEeChh---------hcccCcccceeeCCCCccccccCcc---ccc
Confidence            99998 45555 5555889999999999988 44444321         5567889999999998877776544   335


Q ss_pred             CCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCC
Q 009754          261 LPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEND  340 (526)
Q Consensus       261 ~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~  340 (526)
                      ..+|+.|++++| +++..+...+                                ..+++|+.|+++++ .++.++...+
T Consensus       223 ~~~L~~L~l~~n-~l~~~~~~~~--------------------------------~~l~~L~~L~Ls~n-~l~~~~~~~~  268 (477)
T 2id5_A          223 GLNLTSLSITHC-NLTAVPYLAV--------------------------------RHLVYLRFLNLSYN-PISTIEGSML  268 (477)
T ss_dssp             TCCCSEEEEESS-CCCSCCHHHH--------------------------------TTCTTCCEEECCSS-CCCEECTTSC
T ss_pred             CccccEEECcCC-cccccCHHHh--------------------------------cCccccCeeECCCC-cCCccChhhc
Confidence            568999999985 5555442221                                24588999999885 4666665544


Q ss_pred             hhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754          341 ESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (526)
Q Consensus       341 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  408 (526)
                         ..+++|+.|+++++..-...+..+..+++|++|+++++ .++.++.. .+..+++|++|++++++
T Consensus       269 ---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          269 ---HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             ---TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred             ---cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence               67889999999887543334667788899999999985 67777664 34678889999988764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=4e-19  Score=190.30  Aligned_cols=164  Identities=20%  Similarity=0.105  Sum_probs=115.3

Q ss_pred             CCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhh
Q 009754          315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSE  394 (526)
Q Consensus       315 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  394 (526)
                      ...+++|+.+++.++......+...+   ..+++++.++++.+..-...+..+..+++|+.|+++++.....+.+. .+.
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~  491 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFT  491 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTT---TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCT
T ss_pred             ccccccccchhhhhcccccccccccc---ccccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhh
Confidence            34567888888877543322222222   67788899999887544444566777899999999997656555443 347


Q ss_pred             hccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC
Q 009754          395 SLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG  474 (526)
Q Consensus       395 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~  474 (526)
                      .+++|++|++++| +++.+..   +    .+..+++|++|+++++ +++.++..... .+++|++|+++++.-....|..
T Consensus       492 ~l~~L~~L~Ls~N-~L~~l~~---~----~f~~l~~L~~L~Ls~N-~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          492 ELRNLTFLDLSQC-QLEQLSP---T----AFNSLSSLQVLNMSHN-NFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             TCTTCCEEECTTS-CCCEECT---T----TTTTCTTCCEEECTTS-CCCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSC
T ss_pred             hccccCEEECCCC-ccCCcCh---H----HHcCCCCCCEEECCCC-cCCCCChhHHh-CCCCCCEEECCCCcCCCCCHHH
Confidence            8899999999997 5776654   1    2245789999999997 67877665432 4899999999986433444555


Q ss_pred             CCCC-CCcceEEeeccCCC
Q 009754          475 VLDT-PMLNKVNVTEEEKD  492 (526)
Q Consensus       475 ~~~~-~~L~~l~l~~~~~~  492 (526)
                      +..+ ++|+.|++++|.+.
T Consensus       562 l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          562 LQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TTCCCTTCCEEECTTCCBC
T ss_pred             HHhhhCcCCEEEeeCCCCc
Confidence            5555 68999999777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=4.1e-23  Score=219.68  Aligned_cols=416  Identities=13%  Similarity=0.063  Sum_probs=181.2

Q ss_pred             cCCcCCCceEEeccccccc---Eecccccccc----ccccccccccceeeeccccccccccccCceecCCC-ccEEEecC
Q 009754           23 VGIPSSLVNLNVSRCDKIE---EIIRHVGEEA----KENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS-LERVSMTH   94 (526)
Q Consensus        23 ~~~l~~L~~L~L~~c~~l~---~l~~~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~l~~   94 (526)
                      +..+++|++|++++|..+.   .+|...+...    ......+++|++|+++++ .+++.........+++ |++|++++
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcC
Confidence            3456667777776665432   1222222110    112224666777777665 2332222211112344 77777766


Q ss_pred             CCCccc--cccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCC--c--eeccCCC
Q 009754           95 CPNMKT--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHL--K--EIWHGQA  168 (526)
Q Consensus        95 c~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l--~--~~~~~~~  168 (526)
                      |..+..  ++.....+++|++|+++++.      ..+.    ....+......+++|+.|+++++.--  .  .+.... 
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~------~~~~----~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-  216 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESS------FSEK----DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-  216 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCE------EECC----CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECcccc------ccCc----chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-
Confidence            653321  11111245667777766431      0000    00111222234566777776654411  0  000000 


Q ss_pred             CCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccc
Q 009754          169 LPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKL  248 (526)
Q Consensus       169 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  248 (526)
                         ..+++|++|++.+|. +..+ + ..+..+++|++|+++++...........       ....+++|+.|.+.++. .
T Consensus       217 ---~~~~~L~~L~L~~~~-~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~l~~~~~L~~L~l~~~~-~  282 (592)
T 3ogk_B          217 ---RNCRSLVSVKVGDFE-ILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEKYM-------NLVFPRKLCRLGLSYMG-P  282 (592)
T ss_dssp             ---HHCTTCCEEECSSCB-GGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTSSS-------CCCCCTTCCEEEETTCC-T
T ss_pred             ---hhCCCCcEEeccCcc-HHHH-H-HHHhhhhHHHhhcccccccccchHHHHH-------HhhccccccccCccccc-h
Confidence               235667777776653 3332 2 3366667777777764322211110000       33445566666665531 1


Q ss_pred             cccccCCCccccCCCcceEeeecCCCCcccc-------CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCc
Q 009754          249 KRFCNFTGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL  321 (526)
Q Consensus       249 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  321 (526)
                      ..++..   +..+++|++|++++|. +.+..       ...|+.|.+.++ ... ..+..+            ...+++|
T Consensus       283 ~~l~~~---~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~-~~l~~~------------~~~~~~L  344 (592)
T 3ogk_B          283 NEMPIL---FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGD-RGLEVL------------AQYCKQL  344 (592)
T ss_dssp             TTGGGG---GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHH------------HHHCTTC
T ss_pred             hHHHHH---HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCH-HHHHHH------------HHhCCCC
Confidence            222222   3456666666666654 33211       234555555411 000 000000            0124566


Q ss_pred             cEEEecC----------CCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCC-CCCCCCEEeecc---ccCccc
Q 009754          322 RWLELSG----------LHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSW-HLENLEALEVSK---CHGLIN  386 (526)
Q Consensus       322 ~~L~l~~----------~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~-~l~~L~~L~l~~---c~~l~~  386 (526)
                      ++|++.+          |..++......+  ...+++|++|++ .|+.++.. +..+. .+++|++|+++.   |+.+++
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l--~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~  421 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIAL--AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITD  421 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHH--HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred             CEEEeecCccccccccccCccCHHHHHHH--HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence            6666663          444432211100  134566666666 33333321 11222 255666666652   445554


Q ss_pred             cccc----hhhhhccCCceEEEecccC-cceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEE
Q 009754          387 LLTF----STSESLVNLGRMMIADCKM-IEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVV  461 (526)
Q Consensus       387 l~~~----~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  461 (526)
                      .|..    ..+..+++|++|+++.|.+ +++...     .. ....+++|++|++.+|. +++.........+++|++|+
T Consensus       422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-----~~-~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-----SY-IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-----HH-HHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEE
T ss_pred             chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-----HH-HHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeee
Confidence            3221    1234566666666665543 211110     00 00225666666666653 33211111111256666666


Q ss_pred             EcCCCCcee--ccCCCCCCCCcceEEeeccCCCC
Q 009754          462 VRQCPKMKI--FSQGVLDTPMLNKVNVTEEEKDD  493 (526)
Q Consensus       462 l~~C~~l~~--lp~~~~~~~~L~~l~l~~~~~~~  493 (526)
                      +++|+ ++.  ++.....+++|+.|+++++++..
T Consensus       495 l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             EESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             ccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            66665 321  22222245666666665555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=4.2e-20  Score=196.30  Aligned_cols=306  Identities=13%  Similarity=0.124  Sum_probs=215.1

Q ss_pred             CcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccC
Q 009754           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG  104 (526)
Q Consensus        25 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  104 (526)
                      .+++++.|+++++ .+..+|..+..       .+++|++|++.++. ++..+... ...+++|+.|++++|. ++.++..
T Consensus        49 ~l~~l~~l~l~~~-~l~~lp~~~~~-------~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~  117 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKLPAALLD-------SFRQVELLNLNDLQ-IEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPPH  117 (597)
T ss_dssp             GGCCCSEEEESSC-EESEECTHHHH-------HCCCCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             cCCCceEEEeeCC-CCCCcCHHHHc-------cCCCCcEEECCCCC-CCCCChHH-hcCCCCCCEEECCCCc-CCCCCHH
Confidence            4789999999996 78888875422       38899999999754 66555433 3468999999999985 5655554


Q ss_pred             -cccCCCeeeEEecccccccceeeeccccchhhHHhhhh-hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754          105 -ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (526)
Q Consensus       105 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l  182 (526)
                       +..+++|++|++++               +.+..++.. +..+++|++|+++++. ++.+....   ...+++|++|++
T Consensus       118 ~~~~l~~L~~L~L~~---------------n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L  178 (597)
T 3oja_B          118 VFQNVPLLTVLVLER---------------NDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT---FQATTSLQNLQL  178 (597)
T ss_dssp             TTTTCTTCCEEECCS---------------SCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT---TTTCTTCCEEEC
T ss_pred             HHcCCCCCCEEEeeC---------------CCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhh---hhcCCcCcEEEC
Confidence             46789999999983               344455544 4678999999999886 43322111   145789999999


Q ss_pred             ecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCC
Q 009754          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP  262 (526)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  262 (526)
                      ++|. ++.+ +   +..+++|++|++++| .+..++              ..++|+.|+++++ .+..++..     ..+
T Consensus       179 ~~N~-l~~~-~---~~~l~~L~~L~l~~n-~l~~l~--------------~~~~L~~L~ls~n-~l~~~~~~-----~~~  232 (597)
T 3oja_B          179 SSNR-LTHV-D---LSLIPSLFHANVSYN-LLSTLA--------------IPIAVEELDASHN-SINVVRGP-----VNV  232 (597)
T ss_dssp             TTSC-CSBC-C---GGGCTTCSEEECCSS-CCSEEE--------------CCTTCSEEECCSS-CCCEEECS-----CCS
T ss_pred             cCCC-CCCc-C---hhhhhhhhhhhcccC-cccccc--------------CCchhheeeccCC-cccccccc-----cCC
Confidence            9984 5544 3   677899999999987 444332              3568999999886 45555332     346


Q ss_pred             CcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChh
Q 009754          263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES  342 (526)
Q Consensus       263 ~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~  342 (526)
                      +|+.|++++| .+++.+  .                                .+.+++|+.|+++++. ++.+....+  
T Consensus       233 ~L~~L~L~~n-~l~~~~--~--------------------------------l~~l~~L~~L~Ls~N~-l~~~~~~~~--  274 (597)
T 3oja_B          233 ELTILKLQHN-NLTDTA--W--------------------------------LLNYPGLVEVDLSYNE-LEKIMYHPF--  274 (597)
T ss_dssp             CCCEEECCSS-CCCCCG--G--------------------------------GGGCTTCSEEECCSSC-CCEEESGGG--
T ss_pred             CCCEEECCCC-CCCCCh--h--------------------------------hccCCCCCEEECCCCc-cCCCCHHHh--
Confidence            8889998885 444321  1                                1245788888888854 544433332  


Q ss_pred             hhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccc
Q 009754          343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEA  422 (526)
Q Consensus       343 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  422 (526)
                       ..+++|+.|++++| .++.+|..+..+++|+.|++++| .+..+|.  .+..+++|+.|++++|. +..++.       
T Consensus       275 -~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~~-------  341 (597)
T 3oja_B          275 -VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLKL-------  341 (597)
T ss_dssp             -TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCCC-------
T ss_pred             -cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcCh-------
Confidence             67788888888886 46677777777888888888886 5666664  24678888888888874 444432       


Q ss_pred             cccccccccceeeccccc
Q 009754          423 KDCNVFKELRYLELYCLP  440 (526)
Q Consensus       423 ~~~~~~~~L~~L~l~~c~  440 (526)
                         ..+++|+.|++++++
T Consensus       342 ---~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          342 ---STHHTLKNLTLSHND  356 (597)
T ss_dssp             ---CTTCCCSEEECCSSC
T ss_pred             ---hhcCCCCEEEeeCCC
Confidence               357888888888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.5e-19  Score=186.95  Aligned_cols=280  Identities=19%  Similarity=0.204  Sum_probs=142.9

Q ss_pred             hhcCCCCCcEEEeecCCCCcee-ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccc
Q 009754          142 EMIGFRDMEYLQLSYFPHLKEI-WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL  220 (526)
Q Consensus       142 ~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~  220 (526)
                      .+..+++|++|+++++. ++.+ +...    ..+++|++|++++| .++.+ +...+..+++|++|++++|. +..++..
T Consensus        51 ~~~~l~~L~~L~L~~n~-i~~~~~~~~----~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~~~~  122 (477)
T 2id5_A           51 EFASFPHLEELELNENI-VSAVEPGAF----NNLFNLRTLGLRSN-RLKLI-PLGVFTGLSNLTKLDISENK-IVILLDY  122 (477)
T ss_dssp             TTTTCTTCCEEECTTSC-CCEECTTTT----TTCTTCCEEECCSS-CCCSC-CTTSSTTCTTCCEEECTTSC-CCEECTT
T ss_pred             HccCCCCCCEEECCCCc-cCEeChhhh----hCCccCCEEECCCC-cCCcc-CcccccCCCCCCEEECCCCc-cccCChh
Confidence            34445556666665553 3322 1112    34566666666665 34443 32335566666666666663 3222110


Q ss_pred             cccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchh
Q 009754          221 EEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEE  300 (526)
Q Consensus       221 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~  300 (526)
                               .+..+++|+.|+++++ .+..+.  ...+..+++|++|++++| +++..++..+                 
T Consensus       123 ---------~~~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~l-----------------  172 (477)
T 2id5_A          123 ---------MFQDLYNLKSLEVGDN-DLVYIS--HRAFSGLNSLEQLTLEKC-NLTSIPTEAL-----------------  172 (477)
T ss_dssp             ---------TTTTCTTCCEEEECCT-TCCEEC--TTSSTTCTTCCEEEEESC-CCSSCCHHHH-----------------
T ss_pred             ---------HccccccCCEEECCCC-ccceeC--hhhccCCCCCCEEECCCC-cCcccChhHh-----------------
Confidence                     3445666666666664 233331  111456666666666664 3443322111                 


Q ss_pred             hhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecc
Q 009754          301 NFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (526)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (526)
                                     ..+++|+.|++.++ .+..++...+   ..+++|+.|++++|+.+..++.......+|++|++++
T Consensus       173 ---------------~~l~~L~~L~l~~n-~i~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  233 (477)
T 2id5_A          173 ---------------SHLHGLIVLRLRHL-NINAIRDYSF---KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH  233 (477)
T ss_dssp             ---------------TTCTTCCEEEEESC-CCCEECTTCS---CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred             ---------------cccCCCcEEeCCCC-cCcEeChhhc---ccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence                           13356666666654 3444443333   4556666666666666666655555555666666666


Q ss_pred             ccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEE
Q 009754          381 CHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQV  460 (526)
Q Consensus       381 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  460 (526)
                      + .++.++.. .+..+++|++|+++++. ++.+..   +    ....+++|+.|++.++ .++.+...... .+++|++|
T Consensus       234 n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~---~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L  301 (477)
T 2id5_A          234 C-NLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG---S----MLHELLRLQEIQLVGG-QLAVVEPYAFR-GLNYLRVL  301 (477)
T ss_dssp             S-CCCSCCHH-HHTTCTTCCEEECCSSC-CCEECT---T----SCTTCTTCCEEECCSS-CCSEECTTTBT-TCTTCCEE
T ss_pred             C-cccccCHH-HhcCccccCeeECCCCc-CCccCh---h----hccccccCCEEECCCC-ccceECHHHhc-CcccCCEE
Confidence            4 45555432 23556666666666653 444332   0    1123566666666665 44444332221 36666666


Q ss_pred             EEcCCCCceeccCC-CCCCCCcceEEeeccCC
Q 009754          461 VVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEK  491 (526)
Q Consensus       461 ~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~  491 (526)
                      +++++ +++.+|.. +..+++|+.|++.++.+
T Consensus       302 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          302 NVSGN-QLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             ECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             ECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence            66664 44444432 33456666666655444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=2.8e-19  Score=189.87  Aligned_cols=305  Identities=14%  Similarity=0.140  Sum_probs=187.1

Q ss_pred             ccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc-CcccCCCeeeEEecccccccceeeeccccchhh
Q 009754           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI  136 (526)
Q Consensus        58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  136 (526)
                      +.+++.|.+.++ .++.++... ...+++|+.|++++|. ++.++. .+..+++|++|++++               +.+
T Consensus        50 l~~l~~l~l~~~-~l~~lp~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~---------------n~l  111 (597)
T 3oja_B           50 LNNQKIVTFKNS-TMRKLPAAL-LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGF---------------NAI  111 (597)
T ss_dssp             GCCCSEEEESSC-EESEECTHH-HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCS---------------SCC
T ss_pred             CCCceEEEeeCC-CCCCcCHHH-HccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCC---------------CcC
Confidence            567777777753 344444332 2357788888888774 454443 566677888888873               223


Q ss_pred             HHhh-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccc
Q 009754          137 QKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE  215 (526)
Q Consensus       137 ~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~  215 (526)
                      ..++ ..+..+++|++|+++++. ++.++...   ...+++|++|++++|. ++.+++. .+..+++|++|++++| .+.
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~  184 (597)
T 3oja_B          112 RYLPPHVFQNVPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNNN-LERIEDD-TFQATTSLQNLQLSSN-RLT  184 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECTTS-CCS
T ss_pred             CCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH---hccCCCCCEEEeeCCc-CCCCChh-hhhcCCcCcEEECcCC-CCC
Confidence            3333 334667888888888775 44332211   1346788888888773 4444332 3677888888888877 444


Q ss_pred             hhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCcc
Q 009754          216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK  295 (526)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~  295 (526)
                      .+            ..+.+++|+.|+++++ .+..       +...++|+.|+++++ .+...+..              
T Consensus       185 ~~------------~~~~l~~L~~L~l~~n-~l~~-------l~~~~~L~~L~ls~n-~l~~~~~~--------------  229 (597)
T 3oja_B          185 HV------------DLSLIPSLFHANVSYN-LLST-------LAIPIAVEELDASHN-SINVVRGP--------------  229 (597)
T ss_dssp             BC------------CGGGCTTCSEEECCSS-CCSE-------EECCTTCSEEECCSS-CCCEEECS--------------
T ss_pred             Cc------------ChhhhhhhhhhhcccC-cccc-------ccCCchhheeeccCC-cccccccc--------------
Confidence            43            2345777888887775 2332       234556777777774 34433211              


Q ss_pred             ccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCE
Q 009754          296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEA  375 (526)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  375 (526)
                                           .+++|+.|+++++. ++..     +....+++|+.|++++|..-...|..+..+++|+.
T Consensus       230 ---------------------~~~~L~~L~L~~n~-l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          230 ---------------------VNVELTILKLQHNN-LTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             ---------------------CCSCCCEEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             ---------------------cCCCCCEEECCCCC-CCCC-----hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence                                 12577777777753 3332     11267778888888876543344566777788888


Q ss_pred             EeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCC
Q 009754          376 LEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFP  455 (526)
Q Consensus       376 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  455 (526)
                      |+++++ .+..++.  ....+++|+.|++++| .++.++.        ....+++|+.|+++++ .+..++..    .++
T Consensus       283 L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~--------~~~~l~~L~~L~L~~N-~l~~~~~~----~~~  345 (597)
T 3oja_B          283 LYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHN-SIVTLKLS----THH  345 (597)
T ss_dssp             EECTTS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSS-CCCCCCCC----TTC
T ss_pred             EECCCC-CCCCCCc--ccccCCCCcEEECCCC-CCCccCc--------ccccCCCCCEEECCCC-CCCCcChh----hcC
Confidence            888874 5666554  2356778888888776 3444432        1134678888888876 45555532    277


Q ss_pred             CccEEEEcCCC
Q 009754          456 SLKQVVVRQCP  466 (526)
Q Consensus       456 ~L~~L~l~~C~  466 (526)
                      +|++|++.+++
T Consensus       346 ~L~~L~l~~N~  356 (597)
T 3oja_B          346 TLKNLTLSHND  356 (597)
T ss_dssp             CCSEEECCSSC
T ss_pred             CCCEEEeeCCC
Confidence            88888887754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=2.2e-19  Score=189.51  Aligned_cols=102  Identities=12%  Similarity=0.062  Sum_probs=70.8

Q ss_pred             cccceeEEeeccCceeecc-cccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccC
Q 009754            2 IFLLFYFFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLEN   79 (526)
Q Consensus         2 ~~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   79 (526)
                      ++++++.|+++........ ..++.+++|++|+++++ .+..+ |..+.+        +++|++|+++++. ++.++.. 
T Consensus        50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--------l~~L~~L~Ls~N~-l~~lp~~-  118 (562)
T 3a79_B           50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLF--------NQDLEYLDVSHNR-LQNISCC-  118 (562)
T ss_dssp             SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTT--------CTTCCEEECTTSC-CCEECSC-
T ss_pred             CCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCC--------CCCCCEEECCCCc-CCccCcc-
Confidence            3567788888876655444 26788888888888885 67777 444554        7788888888743 5555443 


Q ss_pred             ceecCCCccEEEecCCCCcccc--ccCcccCCCeeeEEecc
Q 009754           80 YTLEFPSLERVSMTHCPNMKTF--SHGILSTPKLHKVQVTE  118 (526)
Q Consensus        80 ~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~  118 (526)
                         .+++|++|++++|. ++.+  |..+..+++|++|++++
T Consensus       119 ---~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          119 ---PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             ---CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred             ---ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCC
Confidence               57888888888874 4443  35667788888888874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=1.3e-18  Score=186.33  Aligned_cols=160  Identities=16%  Similarity=0.121  Sum_probs=104.6

Q ss_pred             CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhc
Q 009754          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESL  396 (526)
Q Consensus       318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l  396 (526)
                      ..+|+.+++..+. ...++...    ..+++|+.+++.+++.....+ ..+..+++++.++++.+ .+...+.. ....+
T Consensus       396 ~~~L~~L~~~~~~-~~~~~~~~----~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~-~~~~~  468 (635)
T 4g8a_A          396 TISLKYLDLSFNG-VITMSSNF----LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGL  468 (635)
T ss_dssp             CSCCCEEECCSCS-EEEECSCC----TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTT-TTTTC
T ss_pred             hhhhhhhhccccc-cccccccc----cccccccchhhhhcccccccccccccccccccccccccc-cccccccc-ccccc
Confidence            3556666665532 23333332    556777777777665444332 34566777888888774 44444432 34667


Q ss_pred             cCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC-CC
Q 009754          397 VNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ-GV  475 (526)
Q Consensus       397 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~-~~  475 (526)
                      ++|+.|+++++...+.+..       .....+++|++|++++| .++.++..... .+++|++|+++++ +++.++. .+
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~-------~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~-~l~~L~~L~Ls~N-~l~~l~~~~~  538 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTFPY  538 (635)
T ss_dssp             TTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCCBCCCGGG
T ss_pred             hhhhhhhhhhcccccccCc-------hhhhhccccCEEECCCC-ccCCcChHHHc-CCCCCCEEECCCC-cCCCCChhHH
Confidence            8899999988764443322       12245789999999998 67877654432 4899999999986 6766654 45


Q ss_pred             CCCCCcceEEeeccCCCCC
Q 009754          476 LDTPMLNKVNVTEEEKDDD  494 (526)
Q Consensus       476 ~~~~~L~~l~l~~~~~~~~  494 (526)
                      ..+++|+.|+++.+++...
T Consensus       539 ~~l~~L~~L~Ls~N~l~~~  557 (635)
T 4g8a_A          539 KCLNSLQVLDYSLNHIMTS  557 (635)
T ss_dssp             TTCTTCCEEECTTSCCCBC
T ss_pred             hCCCCCCEEECCCCcCCCC
Confidence            5789999999988877543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=1.3e-21  Score=207.96  Aligned_cols=419  Identities=13%  Similarity=0.067  Sum_probs=214.9

Q ss_pred             ccceeEEeeccCceeecc----cccC------------CcCCCceEEecccccccEe-ccccccccccccccccc-ccee
Q 009754            3 FLLFYFFNIHTHAHTFAY----FQVG------------IPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSK-LKVL   64 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~----~~~~------------~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~-L~~L   64 (526)
                      |++|+.|+++++......    ...+            .+++|++|+|++| .+... +..+..       .+++ |++|
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~-------~~~~~L~~L  143 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAK-------ARADDLETL  143 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHH-------HHGGGCCEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHH-------hccccCcEE
Confidence            788999999887653311    1111            6899999999997 34322 222222       2445 9999


Q ss_pred             eeccccccccccccCceecCCCccEEEecCCCCccc-----cccCcccCCCeeeEEecccccccceeeeccccchhhHHh
Q 009754           65 ILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT-----FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC  139 (526)
Q Consensus        65 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l  139 (526)
                      ++.+|..++..........+++|++|++++|. +..     ++.....+++|++|++++..-      .    ......+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~------~----~~~~~~l  212 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEF------A----KISPKDL  212 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCC------S----SCCHHHH
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCC------C----ccCHHHH
Confidence            99888755443332223468999999999884 221     111223577888888873100      0    0011334


Q ss_pred             hhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccC-CChHHHhcCCCCCeeeeccccccchhc
Q 009754          140 YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSA-IPANLLRCLNNLQWLEVRNCDSIEEVL  218 (526)
Q Consensus       140 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~l~~l~~L~~L~l~~~~~l~~~~  218 (526)
                      +..+..+++|+.|+++++. +..+....    ..+++|++|.+..+...... .....+..+++|+.|+++++ ....++
T Consensus       213 ~~~~~~~~~L~~L~L~~~~-~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~  286 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFE-ILELVGFF----KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMP  286 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCB-GGGGHHHH----HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGG
T ss_pred             HHHHhhCCCCcEEeccCcc-HHHHHHHH----hhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHH
Confidence            4444456777777777654 22221111    33456666666542211000 00011344555555555543 222222


Q ss_pred             cccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc-------CcccceeeecC-
Q 009754          219 HLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDN-  290 (526)
Q Consensus       219 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~-  290 (526)
                      .          ....+++|++|++++|. +....... .+..+++|++|++.++  +.+..       ...|++|++++ 
T Consensus       287 ~----------~~~~~~~L~~L~Ls~~~-l~~~~~~~-~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g  352 (592)
T 3ogk_B          287 I----------LFPFAAQIRKLDLLYAL-LETEDHCT-LIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERG  352 (592)
T ss_dssp             G----------GGGGGGGCCEEEETTCC-CCHHHHHH-HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             H----------HHhhcCCCcEEecCCCc-CCHHHHHH-HHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecC
Confidence            2          22344556666665554 22111000 0235555666655532  11111       23455555552 


Q ss_pred             ---------CCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEecc---Cc
Q 009754          291 ---------KEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE---CS  358 (526)
Q Consensus       291 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~---c~  358 (526)
                               +...+-.....+.            ..+++|++|++. +..++......+  ...+++|+.|++.+   |+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~------------~~~~~L~~L~l~-~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          353 ADEQGMEDEEGLVSQRGLIALA------------QGCQELEYMAVY-VSDITNESLESI--GTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             CCSSTTSSTTCCCCHHHHHHHH------------HHCTTCSEEEEE-ESCCCHHHHHHH--HHHCCSCCEEEEEECSCCS
T ss_pred             ccccccccccCccCHHHHHHHH------------hhCccCeEEEee-cCCccHHHHHHH--HhhCCCCcEEEEeecCCCc
Confidence                     2111111111110            135788888883 344433221111  13478888888874   45


Q ss_pred             CccccCC------CCCCCCCCCEEeeccccC-ccccccchhhhhccCCceEEEecccCcceeeccCCccccccccccccc
Q 009754          359 KLQKLVP------PSWHLENLEALEVSKCHG-LINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKEL  431 (526)
Q Consensus       359 ~l~~l~~------~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L  431 (526)
                      .+++.|.      .+..+++|++|+++.|.+ +.+.....+...+++|++|++++|. +++...      ......+++|
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~------~~~~~~~~~L  490 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL------MEFSRGCPNL  490 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH------HHHHTCCTTC
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH------HHHHhcCccc
Confidence            5665432      245578888888887654 3443333344557888888888774 332111      0001246888


Q ss_pred             ceeeccccccccee--cCCCccCCCCCccEEEEcCCCCceeccC--CCCCCCCcceEEe
Q 009754          432 RYLELYCLPSLTSF--CLGNYALEFPSLKQVVVRQCPKMKIFSQ--GVLDTPMLNKVNV  486 (526)
Q Consensus       432 ~~L~l~~c~~l~~~--~~~~~~~~~~~L~~L~l~~C~~l~~lp~--~~~~~~~L~~l~l  486 (526)
                      ++|++++|+ +++.  +....  .+++|++|++++|. ++....  ....+|.++...+
T Consensus       491 ~~L~l~~n~-l~~~~~~~~~~--~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~  545 (592)
T 3ogk_B          491 QKLEMRGCC-FSERAIAAAVT--KLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELI  545 (592)
T ss_dssp             CEEEEESCC-CBHHHHHHHHH--HCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEE
T ss_pred             CeeeccCCC-CcHHHHHHHHH--hcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEe
Confidence            888888886 5432  22222  37888888888886 442211  1113455555555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=2.1e-21  Score=206.55  Aligned_cols=206  Identities=13%  Similarity=0.066  Sum_probs=110.6

Q ss_pred             CCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc-------CcccceeeecCCC--------Ccccc
Q 009754          233 LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDNKE--------PQKLT  297 (526)
Q Consensus       233 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~--------~~~~~  297 (526)
                      .+++|++|++++|. +.+.... ..+..+++|++|++.+|  +.+..       ...|++|++.+++        ..+-.
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLV-KLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHH-HHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             hhCCCCEEEccCCC-CCHHHHH-HHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            45677777777765 4432111 01346677777777776  22211       3456667664321        11101


Q ss_pred             chhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEec-----cCcCccccCC------C
Q 009754          298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEIS-----ECSKLQKLVP------P  366 (526)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~-----~c~~l~~l~~------~  366 (526)
                      .+..+.            ..+++|+.|.+. +..++......+  ...+++|+.|++.     +|+.++..|.      .
T Consensus       363 ~l~~l~------------~~~~~L~~L~~~-~~~l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l  427 (594)
T 2p1m_B          363 GLVSVS------------MGCPKLESVLYF-CRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI  427 (594)
T ss_dssp             HHHHHH------------HHCTTCCEEEEE-ESCCCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred             HHHHHH------------HhchhHHHHHHh-cCCcCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence            111111            124788888554 344433221111  1357788888888     5666664432      1


Q ss_pred             CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceec
Q 009754          367 SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFC  446 (526)
Q Consensus       367 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  446 (526)
                      +..+++|++|++++  .+++.....+...+++|+.|++++|. +++...     .. ....+++|+.|++++|+. ++..
T Consensus       428 ~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~-----~~-l~~~~~~L~~L~L~~n~~-~~~~  497 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM-----HH-VLSGCDSLRKLEIRDCPF-GDKA  497 (594)
T ss_dssp             HHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH-----HH-HHHHCTTCCEEEEESCSC-CHHH
T ss_pred             HhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHH-----HH-HHhcCCCcCEEECcCCCC-cHHH
Confidence            45667888888865  45554333343457888888888774 322111     00 002368888888888864 3322


Q ss_pred             CCCccCCCCCccEEEEcCCCC
Q 009754          447 LGNYALEFPSLKQVVVRQCPK  467 (526)
Q Consensus       447 ~~~~~~~~~~L~~L~l~~C~~  467 (526)
                      .......+++|++|++++|+.
T Consensus       498 ~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          498 LLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHhCCCCCEEeeeCCCC
Confidence            211111378888888888865

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=1.3e-18  Score=170.34  Aligned_cols=206  Identities=18%  Similarity=0.267  Sum_probs=114.3

Q ss_pred             cCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCc
Q 009754           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI  105 (526)
Q Consensus        26 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  105 (526)
                      .++++.|+++++ .+..+|..+.+        +++|++|+++++. ++.++..  ...+++|++|++++| .++.+|..+
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~l~~--------l~~L~~L~L~~n~-l~~lp~~--~~~l~~L~~L~Ls~n-~l~~lp~~l  146 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQAFR--------LSHLQHMTIDAAG-LMELPDT--MQQFAGLETLTLARN-PLRALPASI  146 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSCGGG--------GTTCSEEEEESSC-CCCCCSC--GGGGTTCSEEEEESC-CCCCCCGGG
T ss_pred             ccceeEEEccCC-CchhcChhhhh--------CCCCCEEECCCCC-ccchhHH--HhccCCCCEEECCCC-ccccCcHHH
Confidence            455666666664 45566655554        5566666666532 3333221  234666666666665 344555555


Q ss_pred             ccCCCeeeEEecccccccceeeeccccchhhHHhhhh---------hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCC
Q 009754          106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE---------MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNN  176 (526)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~  176 (526)
                      ..+++|++|+++++..              ...++..         +..+++|+.|+++++. ++.++...    ..+++
T Consensus       147 ~~l~~L~~L~L~~n~~--------------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l----~~l~~  207 (328)
T 4fcg_A          147 ASLNRLRELSIRACPE--------------LTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASI----ANLQN  207 (328)
T ss_dssp             GGCTTCCEEEEEEETT--------------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGG----GGCTT
T ss_pred             hcCcCCCEEECCCCCC--------------ccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhh----cCCCC
Confidence            5666666666663221              1112211         2236667777776654 33332222    44667


Q ss_pred             ccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCC
Q 009754          177 LARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG  256 (526)
Q Consensus       177 L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  256 (526)
                      |++|++++|. ++.+++.  +..+++|++|++++|.....++.          .++.+++|+.|++++|.....++..  
T Consensus       208 L~~L~L~~N~-l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~----------~~~~l~~L~~L~L~~n~~~~~~p~~--  272 (328)
T 4fcg_A          208 LKSLKIRNSP-LSALGPA--IHHLPKLEELDLRGCTALRNYPP----------IFGGRAPLKRLILKDCSNLLTLPLD--  272 (328)
T ss_dssp             CCEEEEESSC-CCCCCGG--GGGCTTCCEEECTTCTTCCBCCC----------CTTCCCCCCEEECTTCTTCCBCCTT--
T ss_pred             CCEEEccCCC-CCcCchh--hccCCCCCEEECcCCcchhhhHH----------HhcCCCCCCEEECCCCCchhhcchh--
Confidence            7777777663 4444332  66677777777777665555544          4455667777777776665555443  


Q ss_pred             ccccCCCcceEeeecCCCCcccc
Q 009754          257 NIIELPELQHLTIQNCPDMETFI  279 (526)
Q Consensus       257 ~~~~~~~L~~L~l~~c~~l~~~~  279 (526)
                       +..+++|++|++++|+....+|
T Consensus       273 -~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          273 -IHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             -GGGCTTCCEEECTTCTTCCCCC
T ss_pred             -hhcCCCCCEEeCCCCCchhhcc
Confidence             5566777777777765554444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=1.6e-18  Score=169.80  Aligned_cols=187  Identities=22%  Similarity=0.306  Sum_probs=127.0

Q ss_pred             CCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (526)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  251 (526)
                      ..+++|++|++++|. ++.+ |.. +..+++|++|++++|..+..+|...+....+. .+..+++|+.|+++++ .++.+
T Consensus       124 ~~l~~L~~L~Ls~n~-l~~l-p~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~-~~~~l~~L~~L~L~~n-~l~~l  198 (328)
T 4fcg_A          124 QQFAGLETLTLARNP-LRAL-PAS-IASLNRLRELSIRACPELTELPEPLASTDASG-EHQGLVNLQSLRLEWT-GIRSL  198 (328)
T ss_dssp             GGGTTCSEEEEESCC-CCCC-CGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC-CEEESTTCCEEEEEEE-CCCCC
T ss_pred             hccCCCCEEECCCCc-cccC-cHH-HhcCcCCCEEECCCCCCccccChhHhhccchh-hhccCCCCCEEECcCC-CcCcc
Confidence            446667777776663 4444 322 66777777777777766666653211000000 1234778888888876 45555


Q ss_pred             ccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCC
Q 009754          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (526)
Q Consensus       252 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  331 (526)
                      +..   +..+++|++|++++| +++.+++ .+                                +.+++|+.|+++++..
T Consensus       199 p~~---l~~l~~L~~L~L~~N-~l~~l~~-~l--------------------------------~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          199 PAS---IANLQNLKSLKIRNS-PLSALGP-AI--------------------------------HHLPKLEELDLRGCTA  241 (328)
T ss_dssp             CGG---GGGCTTCCEEEEESS-CCCCCCG-GG--------------------------------GGCTTCCEEECTTCTT
T ss_pred             hHh---hcCCCCCCEEEccCC-CCCcCch-hh--------------------------------ccCCCCCEEECcCCcc
Confidence            443   667888888888885 4544332 11                                2447888888888776


Q ss_pred             ceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEec
Q 009754          332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD  406 (526)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  406 (526)
                      ...++...    ..+++|+.|++++|+..+.+|..+..+++|++|++++|+.++.+|.  .+..+++|+.+++..
T Consensus       242 ~~~~p~~~----~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          242 LRNYPPIF----GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP  310 (328)
T ss_dssp             CCBCCCCT----TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred             hhhhHHHh----cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence            66665544    7788899999998888888888888889999999999888888876  457888888888865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=1.2e-17  Score=164.08  Aligned_cols=226  Identities=15%  Similarity=0.185  Sum_probs=113.0

Q ss_pred             CCccEEEecCCCCccccc-cCcccCCCeeeEEecccccccceeeeccccchhhHHh-hhhhcCCCCCcEEEeecCCCCce
Q 009754           85 PSLERVSMTHCPNMKTFS-HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        85 ~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      ++|+.|+++++. ++.++ ..+..+++|++|++++               +.+..+ +..+..+++|++|+++++. ++.
T Consensus        54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~---------------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~  116 (332)
T 2ft3_A           54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVN---------------NKISKIHEKAFSPLRKLQKLYISKNH-LVE  116 (332)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS---------------SCCCEECGGGSTTCTTCCEEECCSSC-CCS
T ss_pred             CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCC---------------CccCccCHhHhhCcCCCCEEECCCCc-CCc
Confidence            455566666553 33332 2344555566666652               122222 3345566677777776654 332


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      ++.      ..+++|++|+++++. ++.+ +...+..+++|++|++++|. ++..+...+       ....+ +|+.|++
T Consensus       117 l~~------~~~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-------~~~~l-~L~~L~l  179 (332)
T 2ft3_A          117 IPP------NLPSSLVELRIHDNR-IRKV-PKGVFSGLRNMNCIEMGGNP-LENSGFEPG-------AFDGL-KLNYLRI  179 (332)
T ss_dssp             CCS------SCCTTCCEEECCSSC-CCCC-CSGGGSSCSSCCEEECCSCC-CBGGGSCTT-------SSCSC-CCSCCBC
T ss_pred             cCc------cccccCCEEECCCCc-cCcc-CHhHhCCCccCCEEECCCCc-cccCCCCcc-------cccCC-ccCEEEC
Confidence            222      223677777777763 4444 33336677777777777763 332111000       22333 6677777


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCcc
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR  322 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  322 (526)
                      +++ .++.++..     .+++|++|+++++ +++..++..+                                ..+++|+
T Consensus       180 ~~n-~l~~l~~~-----~~~~L~~L~l~~n-~i~~~~~~~l--------------------------------~~l~~L~  220 (332)
T 2ft3_A          180 SEA-KLTGIPKD-----LPETLNELHLDHN-KIQAIELEDL--------------------------------LRYSKLY  220 (332)
T ss_dssp             CSS-BCSSCCSS-----SCSSCSCCBCCSS-CCCCCCTTSS--------------------------------TTCTTCS
T ss_pred             cCC-CCCccCcc-----ccCCCCEEECCCC-cCCccCHHHh--------------------------------cCCCCCC
Confidence            665 34444322     2256666666663 3433332221                                2335666


Q ss_pred             EEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCcccccc
Q 009754          323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLT  389 (526)
Q Consensus       323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~  389 (526)
                      .|+++++ .++.++...+   ..+++|+.|++++| .++.+|.++..+++|++|+++++ .++.++.
T Consensus       221 ~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~  281 (332)
T 2ft3_A          221 RLGLGHN-QIRMIENGSL---SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGV  281 (332)
T ss_dssp             CCBCCSS-CCCCCCTTGG---GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCT
T ss_pred             EEECCCC-cCCcCChhHh---hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccCh
Confidence            6666553 3333333222   45556666666554 34455555555566666666653 3444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=2.8e-20  Score=197.87  Aligned_cols=383  Identities=15%  Similarity=0.110  Sum_probs=189.2

Q ss_pred             ccceeEEeeccCceeec-ccccC-CcCCCceEEecccccccE--eccccccccccccccccccceeeecccccccccccc
Q 009754            3 FLLFYFFNIHTHAHTFA-YFQVG-IPSSLVNLNVSRCDKIEE--IIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLE   78 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~-~~~~~-~l~~L~~L~L~~c~~l~~--l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   78 (526)
                      +++|+.|+++.+..... +..+. .+++|++|++++|..+..  ++....        .+++|++|++.++. +++....
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~--------~~~~L~~L~L~~~~-i~~~~~~  174 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA--------TCRNLKELDLRESD-VDDVSGH  174 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH--------HCTTCCEEECTTCE-EECCCGG
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH--------hCCCCCEEeCcCCc-cCCcchH
Confidence            56788888887653322 12333 478888888888754443  222222        37788888887765 3332211


Q ss_pred             ---CceecCCCccEEEecCCC-Ccc--ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEE
Q 009754           79 ---NYTLEFPSLERVSMTHCP-NMK--TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYL  152 (526)
Q Consensus        79 ---~~~~~~~~L~~L~l~~c~-~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L  152 (526)
                         .....+++|+.|++++|. .+.  .+..-...+++|++|++.++              ..+..++..+..+++|+.|
T Consensus       175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--------------~~~~~l~~~~~~~~~L~~L  240 (594)
T 2p1m_B          175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--------------VPLEKLATLLQRAPQLEEL  240 (594)
T ss_dssp             GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT--------------SCHHHHHHHHHHCTTCSEE
T ss_pred             HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC--------------CcHHHHHHHHhcCCcceEc
Confidence               112246778888877774 111  11111123577777777743              1222233334444555555


Q ss_pred             EeecCCC-------------------Ccee------ccCCCCCc--CCCCCccEEEEecCCCcccCCChHHHhcCCCCCe
Q 009754          153 QLSYFPH-------------------LKEI------WHGQALPV--SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQW  205 (526)
Q Consensus       153 ~l~~~~~-------------------l~~~------~~~~~~~~--~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~  205 (526)
                      +++.+..                   ++.+      .... ++.  ..+++|++|++++|. ++......++..+++|++
T Consensus       241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~  318 (594)
T 2p1m_B          241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY-LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQR  318 (594)
T ss_dssp             ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG-GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCE
T ss_pred             ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh-HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCE
Confidence            5443321                   0000      0000 000  134566666666664 332112222445666666


Q ss_pred             eeeccccccchhccccccccccCCCCCCCCccceEecCCC--------ccccccccCCCccccCCCcceEeeecCCCCcc
Q 009754          206 LEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL--------PKLKRFCNFTGNIIELPELQHLTIQNCPDMET  277 (526)
Q Consensus       206 L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  277 (526)
                      |++++|..-..+..          ....+++|+.|+++++        ..+++.... .....+++|+.|.+. |.++++
T Consensus       319 L~l~~~~~~~~l~~----------l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~-~l~~~~~~L~~L~~~-~~~l~~  386 (594)
T 2p1m_B          319 LWVLDYIEDAGLEV----------LASTCKDLRELRVFPSEPFVMEPNVALTEQGLV-SVSMGCPKLESVLYF-CRQMTN  386 (594)
T ss_dssp             EEEEGGGHHHHHHH----------HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH-HHHHHCTTCCEEEEE-ESCCCH
T ss_pred             EeCcCccCHHHHHH----------HHHhCCCCCEEEEecCcccccccCCCCCHHHHH-HHHHhchhHHHHHHh-cCCcCH
Confidence            66665521111111          1123556666666332        222211000 001235566666332 344433


Q ss_pred             ccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEec-----CCCCceEeccc-CCh-hhhhhcccc
Q 009754          278 FISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELS-----GLHKVQHLWKE-NDE-SNKAFANLE  350 (526)
Q Consensus       278 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~~l~~~-~~~-~~~~l~~L~  350 (526)
                      .....                   +.            ..+++|+.|++.     +|..++..+.. .+. ....+++|+
T Consensus       387 ~~~~~-------------------l~------------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~  435 (594)
T 2p1m_B          387 AALIT-------------------IA------------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR  435 (594)
T ss_dssp             HHHHH-------------------HH------------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred             HHHHH-------------------HH------------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence            22110                   00            124788888888     55666543321 111 125678899


Q ss_pred             eeEeccCcCcccc-CCCCC-CCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccc
Q 009754          351 SLEISECSKLQKL-VPPSW-HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVF  428 (526)
Q Consensus       351 ~L~l~~c~~l~~l-~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~  428 (526)
                      .|++++  .+++. +..+. .+++|++|++++|. +++.....++..+++|++|++++|+. ++...      ......+
T Consensus       436 ~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~------~~~~~~l  505 (594)
T 2p1m_B          436 RLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL------LANASKL  505 (594)
T ss_dssp             EEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHH------HHTGGGG
T ss_pred             EEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHH------HHHHHhC
Confidence            999866  33321 12222 36789999998874 54443333446688999999988863 22211      0011347


Q ss_pred             cccceeecccccccceecCCCccCCCCCccEEEEcC
Q 009754          429 KELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQ  464 (526)
Q Consensus       429 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~  464 (526)
                      ++|+.|++++|+. +.-........+|.|+...+..
T Consensus       506 ~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~  540 (594)
T 2p1m_B          506 ETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE  540 (594)
T ss_dssp             GGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred             CCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence            8899999998865 2221111112367776655543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.76  E-value=8.4e-17  Score=157.87  Aligned_cols=187  Identities=16%  Similarity=0.123  Sum_probs=110.5

Q ss_pred             hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccc
Q 009754          141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL  220 (526)
Q Consensus       141 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~  220 (526)
                      ..+..+++|++|+++++. ++.++.      ..+++|++|++++| .++.+ +...+..+++|++|++++|. +......
T Consensus        94 ~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~  163 (330)
T 1xku_A           94 GAFAPLVKLERLYLSKNQ-LKELPE------KMPKTLQELRVHEN-EITKV-RKSVFNGLNQMIVVELGTNP-LKSSGIE  163 (330)
T ss_dssp             TTTTTCTTCCEEECCSSC-CSBCCS------SCCTTCCEEECCSS-CCCBB-CHHHHTTCTTCCEEECCSSC-CCGGGBC
T ss_pred             HHhcCCCCCCEEECCCCc-CCccCh------hhcccccEEECCCC-ccccc-CHhHhcCCccccEEECCCCc-CCccCcC
Confidence            344456667777776654 333222      23467888888777 34444 44447778888888887773 3221110


Q ss_pred             cccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchh
Q 009754          221 EEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEE  300 (526)
Q Consensus       221 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~  300 (526)
                      .+       .+..+++|+.|+++++ .++.++..     .+++|++|+++++ +++...+..+                 
T Consensus       164 ~~-------~~~~l~~L~~L~l~~n-~l~~l~~~-----~~~~L~~L~l~~n-~l~~~~~~~~-----------------  212 (330)
T 1xku_A          164 NG-------AFQGMKKLSYIRIADT-NITTIPQG-----LPPSLTELHLDGN-KITKVDAASL-----------------  212 (330)
T ss_dssp             TT-------GGGGCTTCCEEECCSS-CCCSCCSS-----CCTTCSEEECTTS-CCCEECTGGG-----------------
T ss_pred             hh-------hccCCCCcCEEECCCC-ccccCCcc-----ccccCCEEECCCC-cCCccCHHHh-----------------
Confidence            00       3455677777777775 34444322     2367777777774 4444433322                 


Q ss_pred             hhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecc
Q 009754          301 NFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK  380 (526)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  380 (526)
                                     ..+++|+.|+++++ .++.++...+   ..+++|+.|++++| .++.+|.++..+++|++|++++
T Consensus       213 ---------------~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          213 ---------------KGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             ---------------TTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS
T ss_pred             ---------------cCCCCCCEEECCCC-cCceeChhhc---cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC
Confidence                           23467777777774 3555544333   56677777777776 4667777777777777777777


Q ss_pred             ccCcccccc
Q 009754          381 CHGLINLLT  389 (526)
Q Consensus       381 c~~l~~l~~  389 (526)
                      + .++.++.
T Consensus       273 N-~i~~~~~  280 (330)
T 1xku_A          273 N-NISAIGS  280 (330)
T ss_dssp             S-CCCCCCT
T ss_pred             C-cCCccCh
Confidence            4 4555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=3.7e-17  Score=160.55  Aligned_cols=289  Identities=12%  Similarity=0.134  Sum_probs=189.9

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccc-ccCc
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHGI  105 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~  105 (526)
                      .+++.++++++ .+..+|..+          .+++++|++.++. ++...... ...+++|+.|++++|. ++.+ |..+
T Consensus        33 c~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~   98 (332)
T 2ft3_A           33 CHLRVVQCSDL-GLKAVPKEI----------SPDTTLLDLQNND-ISELRKDD-FKGLQHLYALVLVNNK-ISKIHEKAF   98 (332)
T ss_dssp             EETTEEECCSS-CCSSCCSCC----------CTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSC-CCEECGGGS
T ss_pred             ccCCEEECCCC-CccccCCCC----------CCCCeEEECCCCc-CCccCHhH-hhCCCCCcEEECCCCc-cCccCHhHh
Confidence            36888888885 677887654          3578888888753 55554432 3468889999998885 4544 5667


Q ss_pred             ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecC
Q 009754          106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC  185 (526)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c  185 (526)
                      ..+++|++|++++               +.+..++..+.  ++|++|+++++. ++.+....   ...+++|++|+++++
T Consensus        99 ~~l~~L~~L~L~~---------------n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A           99 SPLRKLQKLYISK---------------NHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGV---FSGLRNMNCIEMGGN  157 (332)
T ss_dssp             TTCTTCCEEECCS---------------SCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGG---GSSCSSCCEEECCSC
T ss_pred             hCcCCCCEEECCC---------------CcCCccCcccc--ccCCEEECCCCc-cCccCHhH---hCCCccCCEEECCCC
Confidence            7788899999883               33334444433  789999998876 43332211   145789999999988


Q ss_pred             CCcc-cCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCc
Q 009754          186 TNMS-SAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPEL  264 (526)
Q Consensus       186 ~~l~-~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L  264 (526)
                      .... ...+ ..+..+ +|++|++++| .++.++.            ..+++|+.|+++++ .++.++.  ..+..+++|
T Consensus       158 ~l~~~~~~~-~~~~~l-~L~~L~l~~n-~l~~l~~------------~~~~~L~~L~l~~n-~i~~~~~--~~l~~l~~L  219 (332)
T 2ft3_A          158 PLENSGFEP-GAFDGL-KLNYLRISEA-KLTGIPK------------DLPETLNELHLDHN-KIQAIEL--EDLLRYSKL  219 (332)
T ss_dssp             CCBGGGSCT-TSSCSC-CCSCCBCCSS-BCSSCCS------------SSCSSCSCCBCCSS-CCCCCCT--TSSTTCTTC
T ss_pred             ccccCCCCc-ccccCC-ccCEEECcCC-CCCccCc------------cccCCCCEEECCCC-cCCccCH--HHhcCCCCC
Confidence            5321 1222 225556 8999999988 5666543            23478999999986 4454421  126688999


Q ss_pred             ceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhh
Q 009754          265 QHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNK  344 (526)
Q Consensus       265 ~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  344 (526)
                      ++|+++++ ++...++..+                                ..+++|+.|+++++ .++.++...    .
T Consensus       220 ~~L~L~~N-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N-~l~~lp~~l----~  261 (332)
T 2ft3_A          220 YRLGLGHN-QIRMIENGSL--------------------------------SFLPTLRELHLDNN-KLSRVPAGL----P  261 (332)
T ss_dssp             SCCBCCSS-CCCCCCTTGG--------------------------------GGCTTCCEEECCSS-CCCBCCTTG----G
T ss_pred             CEEECCCC-cCCcCChhHh--------------------------------hCCCCCCEEECCCC-cCeecChhh----h
Confidence            99999985 5665544333                                23489999999986 566776554    7


Q ss_pred             hhcccceeEeccCcCccccCCC-CC------CCCCCCEEeeccccCcc-ccccchhhhhccCCceEEEeccc
Q 009754          345 AFANLESLEISECSKLQKLVPP-SW------HLENLEALEVSKCHGLI-NLLTFSTSESLVNLGRMMIADCK  408 (526)
Q Consensus       345 ~l~~L~~L~l~~c~~l~~l~~~-~~------~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c~  408 (526)
                      .+++|+.|++++++ ++.++.. +.      ..++|+.+++.+++... .+++. .+..+++|+.++++++.
T Consensus       262 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~-~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          262 DLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA-TFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG-GGTTBCCSTTEEC----
T ss_pred             cCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcc-cccccchhhhhhccccc
Confidence            88999999999874 6666432 21      14678888888865321 23332 34567788888877653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=6.7e-17  Score=158.58  Aligned_cols=291  Identities=12%  Similarity=0.149  Sum_probs=187.3

Q ss_pred             cCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccc-ccC
Q 009754           26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHG  104 (526)
Q Consensus        26 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~  104 (526)
                      ..+++.++++++ .+..+|..+          .+++++|+++++ .+++..... ...+++|+.|++++|. ++.+ |..
T Consensus        30 ~c~l~~l~~~~~-~l~~lp~~~----------~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~   95 (330)
T 1xku_A           30 QCHLRVVQCSDL-GLEKVPKDL----------PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINNK-ISKISPGA   95 (330)
T ss_dssp             EEETTEEECTTS-CCCSCCCSC----------CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSC-CCCBCTTT
T ss_pred             cCCCeEEEecCC-CccccCccC----------CCCCeEEECCCC-cCCEeChhh-hccCCCCCEEECCCCc-CCeeCHHH
Confidence            346888888885 677777643          357888888875 455554433 3468889999998884 4444 666


Q ss_pred             cccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEec
Q 009754          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD  184 (526)
Q Consensus       105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~  184 (526)
                      +..+++|++|++++               +.+..++..+  +++|++|+++++. ++.+....   ...+++|++|++++
T Consensus        96 ~~~l~~L~~L~Ls~---------------n~l~~l~~~~--~~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~  154 (330)
T 1xku_A           96 FAPLVKLERLYLSK---------------NQLKELPEKM--PKTLQELRVHENE-ITKVRKSV---FNGLNQMIVVELGT  154 (330)
T ss_dssp             TTTCTTCCEEECCS---------------SCCSBCCSSC--CTTCCEEECCSSC-CCBBCHHH---HTTCTTCCEEECCS
T ss_pred             hcCCCCCCEEECCC---------------CcCCccChhh--cccccEEECCCCc-ccccCHhH---hcCCccccEEECCC
Confidence            77788899999883               2333444433  2789999998876 33221110   14578999999998


Q ss_pred             CCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCc
Q 009754          185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPEL  264 (526)
Q Consensus       185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L  264 (526)
                      +.....-.....+..+++|++|++++| .++.++.            ..+++|+.|+++++. ++.+.  ...+..+++|
T Consensus       155 n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~------------~~~~~L~~L~l~~n~-l~~~~--~~~~~~l~~L  218 (330)
T 1xku_A          155 NPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ------------GLPPSLTELHLDGNK-ITKVD--AASLKGLNNL  218 (330)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS------------SCCTTCSEEECTTSC-CCEEC--TGGGTTCTTC
T ss_pred             CcCCccCcChhhccCCCCcCEEECCCC-ccccCCc------------cccccCCEEECCCCc-CCccC--HHHhcCCCCC
Confidence            854221112233788999999999988 5665543            234899999999874 55442  1126688999


Q ss_pred             ceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhh
Q 009754          265 QHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNK  344 (526)
Q Consensus       265 ~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  344 (526)
                      ++|+++++ +++..++..+                                ..+++|+.|+++++ .++.++...    .
T Consensus       219 ~~L~Ls~n-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N-~l~~lp~~l----~  260 (330)
T 1xku_A          219 AKLGLSFN-SISAVDNGSL--------------------------------ANTPHLRELHLNNN-KLVKVPGGL----A  260 (330)
T ss_dssp             CEEECCSS-CCCEECTTTG--------------------------------GGSTTCCEEECCSS-CCSSCCTTT----T
T ss_pred             CEEECCCC-cCceeChhhc--------------------------------cCCCCCCEEECCCC-cCccCChhh----c
Confidence            99999985 5665543332                                23489999999986 466666554    7


Q ss_pred             hhcccceeEeccCcCccccCCCCC-------CCCCCCEEeeccccCcc-ccccchhhhhccCCceEEEecc
Q 009754          345 AFANLESLEISECSKLQKLVPPSW-------HLENLEALEVSKCHGLI-NLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       345 ~l~~L~~L~l~~c~~l~~l~~~~~-------~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      .+++|+.|++++++ ++.++....       ..++|+.+++.+.+... .+++. ....+++++.++++++
T Consensus       261 ~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~-~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          261 DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS-TFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG-GGTTCCCGGGEEC---
T ss_pred             cCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCcc-ccccccceeEEEeccc
Confidence            78999999999874 666553221       23567778877754221 12222 2344566666666553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=4e-17  Score=158.79  Aligned_cols=253  Identities=11%  Similarity=0.045  Sum_probs=125.6

Q ss_pred             CCCceEEeccccccc---EeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc
Q 009754           27 SSLVNLNVSRCDKIE---EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH  103 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~---~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  103 (526)
                      .++++|+++++ .+.   .+|..+.+        +++|++|+++++..+....+.. ...+++|++|+++++..-..+|.
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l~~--------l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~  119 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSLAN--------LPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGG--------CTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCG
T ss_pred             ceEEEEECCCC-CccCCcccChhHhC--------CCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCH
Confidence            56777777775 344   45665555        6677777776433444322222 33566666666666643334554


Q ss_pred             CcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEe
Q 009754          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD  183 (526)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~  183 (526)
                      .+..+++|++|++++              +.....++..+..                            +++|++|+++
T Consensus       120 ~~~~l~~L~~L~Ls~--------------N~l~~~~p~~~~~----------------------------l~~L~~L~L~  157 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSY--------------NALSGTLPPSISS----------------------------LPNLVGITFD  157 (313)
T ss_dssp             GGGGCTTCCEEECCS--------------SEEESCCCGGGGG----------------------------CTTCCEEECC
T ss_pred             HHhCCCCCCEEeCCC--------------CccCCcCChHHhc----------------------------CCCCCeEECc
Confidence            455555555555552              1111122333333                            4455555555


Q ss_pred             cCCCcccCCChHHHhcCC-CCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCC
Q 009754          184 DCTNMSSAIPANLLRCLN-NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP  262 (526)
Q Consensus       184 ~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  262 (526)
                      +|.....+ |.. +..++ .|++|++++|.....++.          .+..++ |+.|+++++.--...+..   +..++
T Consensus       158 ~N~l~~~~-p~~-l~~l~~~L~~L~L~~N~l~~~~~~----------~~~~l~-L~~L~Ls~N~l~~~~~~~---~~~l~  221 (313)
T 1ogq_A          158 GNRISGAI-PDS-YGSFSKLFTSMTISRNRLTGKIPP----------TFANLN-LAFVDLSRNMLEGDASVL---FGSDK  221 (313)
T ss_dssp             SSCCEEEC-CGG-GGCCCTTCCEEECCSSEEEEECCG----------GGGGCC-CSEEECCSSEEEECCGGG---CCTTS
T ss_pred             CCcccCcC-CHH-HhhhhhcCcEEECcCCeeeccCCh----------HHhCCc-ccEEECcCCcccCcCCHH---HhcCC
Confidence            54221122 222 44444 556666655532223332          222233 566666554221111111   44556


Q ss_pred             CcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce-EecccCCh
Q 009754          263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ-HLWKENDE  341 (526)
Q Consensus       263 ~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~  341 (526)
                      +|+.|+++++ +++...+.                                 ...+++|++|+++++. ++ .++...  
T Consensus       222 ~L~~L~L~~N-~l~~~~~~---------------------------------~~~l~~L~~L~Ls~N~-l~~~~p~~l--  264 (313)
T 1ogq_A          222 NTQKIHLAKN-SLAFDLGK---------------------------------VGLSKNLNGLDLRNNR-IYGTLPQGL--  264 (313)
T ss_dssp             CCSEEECCSS-EECCBGGG---------------------------------CCCCTTCCEEECCSSC-CEECCCGGG--
T ss_pred             CCCEEECCCC-ceeeecCc---------------------------------ccccCCCCEEECcCCc-ccCcCChHH--
Confidence            6666666663 23221111                                 1233666777776643 33 333322  


Q ss_pred             hhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCcccc
Q 009754          342 SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINL  387 (526)
Q Consensus       342 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l  387 (526)
                        ..+++|+.|++++++....+|.. ..+++|+.+++.+++.+...
T Consensus       265 --~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          265 --TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             --GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             --hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence              66677777777776543355544 66777777777776555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=1.2e-19  Score=186.83  Aligned_cols=293  Identities=19%  Similarity=0.110  Sum_probs=147.7

Q ss_pred             HhhhhhcCCCCCcEEEeecCCCCceeccCCCCC---cCCCCCccEEEEecCCCcccCCC---hHHHhcCCCCCeeeeccc
Q 009754          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP---VSFFNNLARLVVDDCTNMSSAIP---ANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       138 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~c~~l~~~~~---~~~l~~l~~L~~L~l~~~  211 (526)
                      .++..+..+++|++|+++++. +++..... +.   ....++|++|++++|. ++....   ...+..+++|++|++++|
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence            445555566666666666655 33111000 00   0123467777777763 332111   223556778888888777


Q ss_pred             cccchhc-c-ccccccccCCCCCCCCccceEecCCCccccc-----cccCCCccccCCCcceEeeecCCCCccccCcccc
Q 009754          212 DSIEEVL-H-LEEQNADKEHRGPLFPKLYGLRLIDLPKLKR-----FCNFTGNIIELPELQHLTIQNCPDMETFISNSVV  284 (526)
Q Consensus       212 ~~l~~~~-~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~  284 (526)
                      . +.... . +..  .    .....++|+.|+++++. ++.     ++..   +..+++|++|++++| ++.+.....+.
T Consensus       181 ~-i~~~~~~~l~~--~----l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~---l~~~~~L~~L~Ls~n-~l~~~~~~~l~  248 (461)
T 1z7x_W          181 D-INEAGVRVLCQ--G----LKDSPCQLEALKLESCG-VTSDNCRDLCGI---VASKASLRELALGSN-KLGDVGMAELC  248 (461)
T ss_dssp             B-CHHHHHHHHHH--H----HHHSCCCCCEEECTTSC-CBTTHHHHHHHH---HHHCTTCCEEECCSS-BCHHHHHHHHH
T ss_pred             C-cchHHHHHHHH--H----HhcCCCCceEEEccCCC-CcHHHHHHHHHH---HHhCCCccEEeccCC-cCChHHHHHHH
Confidence            4 43321 1 000  0    00124577888887763 332     1111   446778888888875 45443211100


Q ss_pred             eeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCCh-hhhhhcccceeEeccCcCccc-
Q 009754          285 HVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE-SNKAFANLESLEISECSKLQK-  362 (526)
Q Consensus       285 ~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~-  362 (526)
                      .               .+            ...+++|+.|+++++ .++......++ ....+++|++|+++++. +++ 
T Consensus       249 ~---------------~~------------~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~  299 (461)
T 1z7x_W          249 P---------------GL------------LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDE  299 (461)
T ss_dssp             H---------------HH------------TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHH
T ss_pred             H---------------HH------------hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchH
Confidence            0               00            012367777777775 34331110000 11456777888877764 321 


Q ss_pred             ----cCCCC-CCCCCCCEEeeccccCccccccc---hhhhhccCCceEEEecccCcceeeccCCccccccc-ccccccce
Q 009754          363 ----LVPPS-WHLENLEALEVSKCHGLINLLTF---STSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDC-NVFKELRY  433 (526)
Q Consensus       363 ----l~~~~-~~l~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~  433 (526)
                          +...+ ...++|++|++++|. +++....   ..+..+++|++|+++++ .+++....   ...... ...++|++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~---~l~~~l~~~~~~L~~  374 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR---ELCQGLGQPGSVLRV  374 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH---HHHHHHTSTTCCCCE
T ss_pred             HHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH---HHHHHHcCCCCceEE
Confidence                11111 123578888888864 4433211   12345688888888876 34433210   000000 11468888


Q ss_pred             eecccccccc-----eecCCCccCCCCCccEEEEcCCCCcee---------ccCCCCCCCCcceEEe
Q 009754          434 LELYCLPSLT-----SFCLGNYALEFPSLKQVVVRQCPKMKI---------FSQGVLDTPMLNKVNV  486 (526)
Q Consensus       434 L~l~~c~~l~-----~~~~~~~~~~~~~L~~L~l~~C~~l~~---------lp~~~~~~~~L~~l~l  486 (526)
                      |++++| .++     .++.....  +++|++|++++|+ ++.         +|.   ..++|+.|.+
T Consensus       375 L~L~~n-~i~~~~~~~l~~~l~~--~~~L~~L~l~~N~-i~~~~~~~l~~~l~~---~~~~L~~L~~  434 (461)
T 1z7x_W          375 LWLADC-DVSDSSCSSLAATLLA--NHSLRELDLSNNC-LGDAGILQLVESVRQ---PGCLLEQLVL  434 (461)
T ss_dssp             EECTTS-CCCHHHHHHHHHHHHH--CCCCCEEECCSSS-CCHHHHHHHHHHHTS---TTCCCCEEEC
T ss_pred             EECCCC-CCChhhHHHHHHHHHh--CCCccEEECCCCC-CCHHHHHHHHHHhcc---CCcchhheee
Confidence            888887 454     34444333  7888899888864 332         232   2346777777

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=1.1e-15  Score=161.37  Aligned_cols=234  Identities=18%  Similarity=0.150  Sum_probs=126.4

Q ss_pred             CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (526)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  254 (526)
                      ++|++|++++| .++.+++     .+++|++|++++| .++.++.             .+++|+.|+++++ .++.++. 
T Consensus        61 ~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~-------------~l~~L~~L~Ls~N-~l~~l~~-  118 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV-------------LPPGLLELSIFSN-PLTHLPA-  118 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC-------------CCTTCCEEEECSC-CCCCCCC-
T ss_pred             CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC-------------CCCCCCEEECcCC-cCCCCCC-
Confidence            45555555555 3333322     3455555555555 2333321             3455555555553 2333321 


Q ss_pred             CCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754          255 TGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (526)
Q Consensus       255 ~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  332 (526)
                           .+++|+.|+++++ +++.++  ..+|+.|+++++.+..++.                  .+++|+.|++.++ .+
T Consensus       119 -----~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~~------------------~~~~L~~L~L~~N-~l  173 (622)
T 3g06_A          119 -----LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPA------------------LPSELCKLWAYNN-QL  173 (622)
T ss_dssp             -----CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC------------------CCTTCCEEECCSS-CC
T ss_pred             -----CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcCC------------------ccCCCCEEECCCC-CC
Confidence                 3455555555553 344443  2445555555554443321                  1256677777663 34


Q ss_pred             eEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcce
Q 009754          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQ  412 (526)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  412 (526)
                      +.++       ..+++|+.|++++| .++.+|..   +++|+.|+++++ .++.++.     .+++|++|+++++ .++.
T Consensus       174 ~~l~-------~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N-~L~~  235 (622)
T 3g06_A          174 TSLP-------MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGN-RLTS  235 (622)
T ss_dssp             SCCC-------CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSC
T ss_pred             CCCc-------ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCC-----CCCCCCEEEccCC-ccCc
Confidence            4444       23466777777665 35555432   356777777764 4555443     2356777777665 4444


Q ss_pred             eeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCC
Q 009754          413 IIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEK  491 (526)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~  491 (526)
                      ++.           .+++|+.|+++++ .++.++.   .  +++|++|++++| +++.+|..+..+++|+.|++++|.+
T Consensus       236 lp~-----------~l~~L~~L~Ls~N-~L~~lp~---~--~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          236 LPV-----------LPSELKELMVSGN-RLTSLPM---L--PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCC-----------CCTTCCEEECCSS-CCSCCCC---C--CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             CCC-----------CCCcCcEEECCCC-CCCcCCc---c--cccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence            432           3567777777765 5666655   2  567777777665 5556666665667777777755554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=7.6e-16  Score=162.53  Aligned_cols=256  Identities=18%  Similarity=0.126  Sum_probs=157.3

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL  106 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  106 (526)
                      .+++.|+++++ .+..+|..+          .++|++|++.++ .++.++.     .+++|+.|++++|. ++.+|.   
T Consensus        40 ~~l~~L~ls~n-~L~~lp~~l----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGES-GLTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSS-CCSCCCSCC----------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCCCC---
T ss_pred             CCCcEEEecCC-CcCccChhh----------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcCCC---
Confidence            35777777774 567776643          246777777765 3544433     36777777777773 666654   


Q ss_pred             cCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCC
Q 009754          107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT  186 (526)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~  186 (526)
                      .+++|++|++++               +.+..++.   .+++|+.|+++++. ++.+      + ..+++|++|++++| 
T Consensus        99 ~l~~L~~L~Ls~---------------N~l~~l~~---~l~~L~~L~L~~N~-l~~l------p-~~l~~L~~L~Ls~N-  151 (622)
T 3g06_A           99 LPPGLLELSIFS---------------NPLTHLPA---LPSGLCKLWIFGNQ-LTSL------P-VLPPGLQELSVSDN-  151 (622)
T ss_dssp             CCTTCCEEEECS---------------CCCCCCCC---CCTTCCEEECCSSC-CSCC------C-CCCTTCCEEECCSS-
T ss_pred             CCCCCCEEECcC---------------CcCCCCCC---CCCCcCEEECCCCC-CCcC------C-CCCCCCCEEECcCC-
Confidence            567777777762               22233333   45778888887765 3332      2 23478888888887 


Q ss_pred             CcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcce
Q 009754          187 NMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQH  266 (526)
Q Consensus       187 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~  266 (526)
                      .++.++.     .+++|+.|++++| .++.++             ..+++|+.|+++++ .++.++.      .+++|+.
T Consensus       152 ~l~~l~~-----~~~~L~~L~L~~N-~l~~l~-------------~~~~~L~~L~Ls~N-~l~~l~~------~~~~L~~  205 (622)
T 3g06_A          152 QLASLPA-----LPSELCKLWAYNN-QLTSLP-------------MLPSGLQELSVSDN-QLASLPT------LPSELYK  205 (622)
T ss_dssp             CCSCCCC-----CCTTCCEEECCSS-CCSCCC-------------CCCTTCCEEECCSS-CCSCCCC------CCTTCCE
T ss_pred             cCCCcCC-----ccCCCCEEECCCC-CCCCCc-------------ccCCCCcEEECCCC-CCCCCCC------ccchhhE
Confidence            4554422     3567888888877 455543             23678888888875 3554432      3467888


Q ss_pred             EeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhh
Q 009754          267 LTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAF  346 (526)
Q Consensus       267 L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l  346 (526)
                      |++++| +++.++.                                    .+++|+.|+++++ .++.++       ..+
T Consensus       206 L~L~~N-~l~~l~~------------------------------------~~~~L~~L~Ls~N-~L~~lp-------~~l  240 (622)
T 3g06_A          206 LWAYNN-RLTSLPA------------------------------------LPSGLKELIVSGN-RLTSLP-------VLP  240 (622)
T ss_dssp             EECCSS-CCSSCCC------------------------------------CCTTCCEEECCSS-CCSCCC-------CCC
T ss_pred             EECcCC-cccccCC------------------------------------CCCCCCEEEccCC-ccCcCC-------CCC
Confidence            888774 4444331                                    1256777777664 454444       334


Q ss_pred             cccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754          347 ANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (526)
Q Consensus       347 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  408 (526)
                      ++|+.|++++| .++.+|.   .+++|+.|++++| .++.+|.  .+..+++|+.|++++++
T Consensus       241 ~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          241 SELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred             CcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence            67777777765 4566655   4567777777775 5556654  24667777777777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.69  E-value=4.6e-17  Score=158.40  Aligned_cols=236  Identities=14%  Similarity=0.079  Sum_probs=136.4

Q ss_pred             hhhcCCCCCcEEEeecCCCCc-eeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcc
Q 009754          141 EEMIGFRDMEYLQLSYFPHLK-EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH  219 (526)
Q Consensus       141 ~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~  219 (526)
                      ..+..+++|++|+++++..+. .++...    ..+++|++|++++|.....+ |.. +..+++|++|++++|.....++.
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~-p~~-~~~l~~L~~L~Ls~N~l~~~~p~  143 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHTNVSGAI-PDF-LSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEECCEEEC-CGG-GGGCTTCCEEECCSSEEESCCCG
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCCeeCCcC-CHH-HhCCCCCCEEeCCCCccCCcCCh
Confidence            344445555555555321122 122222    34666777777666322232 322 66777777777777743324433


Q ss_pred             ccccccccCCCCCCCCccceEecCCCccccccccCCCccccCC-CcceEeeecCCCCccccCcccceeeecCCCCccccc
Q 009754          220 LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP-ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTS  298 (526)
Q Consensus       220 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~  298 (526)
                                .+..+++|+.|+++++.--..++..   +..++ +|++|+++++ ++....+..+.              
T Consensus       144 ----------~~~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~~L~~L~L~~N-~l~~~~~~~~~--------------  195 (313)
T 1ogq_A          144 ----------SISSLPNLVGITFDGNRISGAIPDS---YGSFSKLFTSMTISRN-RLTGKIPPTFA--------------  195 (313)
T ss_dssp             ----------GGGGCTTCCEEECCSSCCEEECCGG---GGCCCTTCCEEECCSS-EEEEECCGGGG--------------
T ss_pred             ----------HHhcCCCCCeEECcCCcccCcCCHH---HhhhhhcCcEEECcCC-eeeccCChHHh--------------
Confidence                      3455677777777775432233332   45665 7777777774 44433332221              


Q ss_pred             hhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEee
Q 009754          299 EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEV  378 (526)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l  378 (526)
                                        .++ |+.|+++++ .++......+   ..+++|+.|+++++. ++..++.+..+++|++|++
T Consensus       196 ------------------~l~-L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~L  251 (313)
T 1ogq_A          196 ------------------NLN-LAFVDLSRN-MLEGDASVLF---GSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDL  251 (313)
T ss_dssp             ------------------GCC-CSEEECCSS-EEEECCGGGC---CTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEEC
T ss_pred             ------------------CCc-ccEEECcCC-cccCcCCHHH---hcCCCCCEEECCCCc-eeeecCcccccCCCCEEEC
Confidence                              123 777777775 3443333322   667888888888764 4433344677788999999


Q ss_pred             ccccCcc-ccccchhhhhccCCceEEEecccCcc-eeeccCCcccccccccccccceeecccccccceecC
Q 009754          379 SKCHGLI-NLLTFSTSESLVNLGRMMIADCKMIE-QIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCL  447 (526)
Q Consensus       379 ~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  447 (526)
                      +++. +. .+|.  .+..+++|++|+++++. ++ .++.   .      ..+++|+.+++.+++.+...|.
T Consensus       252 s~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~-l~~~ip~---~------~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          252 RNNR-IYGTLPQ--GLTQLKFLHSLNVSFNN-LCGEIPQ---G------GNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             CSSC-CEECCCG--GGGGCTTCCEEECCSSE-EEEECCC---S------TTGGGSCGGGTCSSSEEESTTS
T ss_pred             cCCc-ccCcCCh--HHhcCcCCCEEECcCCc-ccccCCC---C------ccccccChHHhcCCCCccCCCC
Confidence            8864 44 4443  34678889999998874 43 3332   1      3578899999988876665443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=3.3e-16  Score=155.15  Aligned_cols=206  Identities=15%  Similarity=0.116  Sum_probs=128.2

Q ss_pred             CcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc-c
Q 009754           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-H  103 (526)
Q Consensus        25 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~  103 (526)
                      .++.....+.++ +.+..+|..+          .++|++|+++++ .++..+... ...+++|+.|+++++ .++.++ .
T Consensus        29 ~C~~~~~c~~~~-~~l~~iP~~~----------~~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~   94 (353)
T 2z80_A           29 SCDRNGICKGSS-GSLNSIPSGL----------TEAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTIEED   94 (353)
T ss_dssp             EECTTSEEECCS-TTCSSCCTTC----------CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTT
T ss_pred             CCCCCeEeeCCC-CCcccccccc----------cccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCccCHh
Confidence            355555677777 3677777653          347888888864 355554432 346888888888887 455543 4


Q ss_pred             CcccCCCeeeEEecccccccceeeeccccchhhHHhhhh-hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754          104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (526)
Q Consensus       104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l  182 (526)
                      .+..+++|++|++++               +.+..++.. +..+++|++|+++++. ++.+....  ....+++|++|++
T Consensus        95 ~~~~l~~L~~L~Ls~---------------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~--~~~~l~~L~~L~l  156 (353)
T 2z80_A           95 SFSSLGSLEHLDLSY---------------NYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETS--LFSHLTKLQILRV  156 (353)
T ss_dssp             TTTTCTTCCEEECCS---------------SCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSC--SCTTCTTCCEEEE
T ss_pred             hcCCCCCCCEEECCC---------------CcCCcCCHhHhCCCccCCEEECCCCC-CcccCchh--hhccCCCCcEEEC
Confidence            466678888888872               333344433 5677888888888775 43332200  0145778888888


Q ss_pred             ecCCCcccCCChHHHhcCCCCCeeeeccccccchh-ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccC
Q 009754          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV-LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL  261 (526)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  261 (526)
                      ++|..++.+++. .+..+++|++|++++|. +..+ +.          .+..+++|++|+++++. ++.++..  ....+
T Consensus       157 ~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~----------~l~~l~~L~~L~l~~n~-l~~~~~~--~~~~~  221 (353)
T 2z80_A          157 GNMDTFTKIQRK-DFAGLTFLEELEIDASD-LQSYEPK----------SLKSIQNVSHLILHMKQ-HILLLEI--FVDVT  221 (353)
T ss_dssp             EESSSCCEECTT-TTTTCCEEEEEEEEETT-CCEECTT----------TTTTCSEEEEEEEECSC-STTHHHH--HHHHT
T ss_pred             CCCccccccCHH-HccCCCCCCEEECCCCC-cCccCHH----------HHhccccCCeecCCCCc-cccchhh--hhhhc
Confidence            887555555332 36778888888888774 3333 22          45567788888887754 3444321  12347


Q ss_pred             CCcceEeeecCCCCccc
Q 009754          262 PELQHLTIQNCPDMETF  278 (526)
Q Consensus       262 ~~L~~L~l~~c~~l~~~  278 (526)
                      ++|+.|+++++ +++..
T Consensus       222 ~~L~~L~L~~n-~l~~~  237 (353)
T 2z80_A          222 SSVECLELRDT-DLDTF  237 (353)
T ss_dssp             TTEEEEEEESC-BCTTC
T ss_pred             ccccEEECCCC-ccccc
Confidence            78888888874 44443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.67  E-value=5.3e-16  Score=153.64  Aligned_cols=259  Identities=14%  Similarity=0.085  Sum_probs=168.9

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      .++|++|+++++. ++.+++ ..+..+++|++|++++| .++.++..         .+..+++|++|+++++ .++.++.
T Consensus        51 ~~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~Ls~n-~l~~~~~  117 (353)
T 2z80_A           51 TEAVKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSN-GINTIEED---------SFSSLGSLEHLDLSYN-YLSNLSS  117 (353)
T ss_dssp             CTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTS-CCCEECTT---------TTTTCTTCCEEECCSS-CCSSCCH
T ss_pred             cccCcEEECCCCc-CcccCH-HHhccCCCCCEEECCCC-ccCccCHh---------hcCCCCCCCEEECCCC-cCCcCCH
Confidence            4678888888773 555533 23677888888888877 45444210         3556788888888875 3444432


Q ss_pred             CCCccccCCCcceEeeecCCCCccccC-cccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754          254 FTGNIIELPELQHLTIQNCPDMETFIS-NSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  332 (526)
                      .  .+..+++|++|+++++ +++.++. ..                                ...+++|+.|+++++..+
T Consensus       118 ~--~~~~l~~L~~L~L~~n-~l~~l~~~~~--------------------------------~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          118 S--WFKPLSSLTFLNLLGN-PYKTLGETSL--------------------------------FSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             H--HHTTCTTCSEEECTTC-CCSSSCSSCS--------------------------------CTTCTTCCEEEEEESSSC
T ss_pred             h--HhCCCccCCEEECCCC-CCcccCchhh--------------------------------hccCCCCcEEECCCCccc
Confidence            1  1456788888888874 4554432 11                                134588888988887667


Q ss_pred             eEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcce
Q 009754          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQ  412 (526)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  412 (526)
                      +.++...+   ..+++|+.|+++++..-...|..+..+++|++|+++++ .++.++.. ....+++|++|+++++. ++.
T Consensus       163 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~-~~~~~~~L~~L~L~~n~-l~~  236 (353)
T 2z80_A          163 TKIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEI-FVDVTSSVECLELRDTD-LDT  236 (353)
T ss_dssp             CEECTTTT---TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHHHH-HHHHTTTEEEEEEESCB-CTT
T ss_pred             cccCHHHc---cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccchhh-hhhhcccccEEECCCCc-ccc
Confidence            77755444   67889999999987644444778888899999999986 45655542 34568899999998873 443


Q ss_pred             eeccCCcccccccccccccceeeccccc----ccceecCCCccCCCCCccEEEEcCCCCceeccCCC-CCCCCcceEEee
Q 009754          413 IIQLQVGEEAKDCNVFKELRYLELYCLP----SLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGV-LDTPMLNKVNVT  487 (526)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~----~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~-~~~~~L~~l~l~  487 (526)
                      ....+    .......+.++.+++.++.    .+..++.....  +++|++|++++| +++.+|... ..+++|+.++++
T Consensus       237 ~~~~~----l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~--l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          237 FHFSE----LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH  309 (353)
T ss_dssp             CCCC----------CCCCCCEEEEESCBCCHHHHHHHHHHHHT--CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             ccccc----cccccccchhhccccccccccCcchhhhHHHHhc--ccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence            32210    0001224556666665542    12234433333  899999999986 777888764 678999999997


Q ss_pred             ccCCCC
Q 009754          488 EEEKDD  493 (526)
Q Consensus       488 ~~~~~~  493 (526)
                      ++++..
T Consensus       310 ~N~~~~  315 (353)
T 2z80_A          310 TNPWDC  315 (353)
T ss_dssp             SSCBCC
T ss_pred             CCCccC
Confidence            776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.66  E-value=3.9e-15  Score=152.60  Aligned_cols=207  Identities=21%  Similarity=0.204  Sum_probs=104.6

Q ss_pred             hhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccc
Q 009754          142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE  221 (526)
Q Consensus       142 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~  221 (526)
                      .+..+++|+.|+++++. ++.+....   ...+++|++|++++| .++.+ +...+..+++|++|++++| .++.++.. 
T Consensus        94 ~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-  165 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNS-IRQIEVGA---FNGLASLNTLELFDN-WLTVI-PSGAFEYLSKLRELWLRNN-PIESIPSY-  165 (452)
T ss_dssp             TTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCSBC-CTTTSSSCTTCCEEECCSC-CCCEECTT-
T ss_pred             HcCCCCCCCEEECCCCc-cCCcChhh---ccCcccCCEEECCCC-cCCcc-ChhhhcccCCCCEEECCCC-CcceeCHh-
Confidence            34455666666666554 33222111   034566666666665 34443 2333556666666666666 34433321 


Q ss_pred             ccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhh
Q 009754          222 EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEEN  301 (526)
Q Consensus       222 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~  301 (526)
                              .+..+++|+.|+++++..+..++.  ..+..+++|+.|++++| +++..+.                     
T Consensus       166 --------~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n-~l~~~~~---------------------  213 (452)
T 3zyi_A          166 --------AFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMC-NIKDMPN---------------------  213 (452)
T ss_dssp             --------TTTTCTTCCEEECCCCTTCCEECT--TTTTTCTTCCEEECTTS-CCSSCCC---------------------
T ss_pred             --------HHhcCCcccEEeCCCCCCccccCh--hhccCCCCCCEEECCCC-ccccccc---------------------
Confidence                    344566666666666655555532  12445666666666664 3433320                     


Q ss_pred             hhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccc
Q 009754          302 FLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC  381 (526)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  381 (526)
                                   ...+++|+.|+++++ .++.+....+   ..+++|+.|+++++..-...+..+..+++|+.|+++++
T Consensus       214 -------------~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          214 -------------LTPLVGLEELEMSGN-HFPEIRPGSF---HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             -------------CTTCTTCCEEECTTS-CCSEECGGGG---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -------------ccccccccEEECcCC-cCcccCcccc---cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence                         123356666666653 3444433222   45566666666655322222344555566666666664


Q ss_pred             cCccccccchhhhhccCCceEEEecc
Q 009754          382 HGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       382 ~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                       .++.++.. .+..+++|+.|+++++
T Consensus       277 -~l~~~~~~-~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          277 -NLSSLPHD-LFTPLRYLVELHLHHN  300 (452)
T ss_dssp             -CCSCCCTT-SSTTCTTCCEEECCSS
T ss_pred             -cCCccChH-HhccccCCCEEEccCC
Confidence             45555443 2345566666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=4.1e-15  Score=151.81  Aligned_cols=205  Identities=22%  Similarity=0.270  Sum_probs=97.1

Q ss_pred             hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccc
Q 009754          143 MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE  222 (526)
Q Consensus       143 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  222 (526)
                      +..+++|+.|+++++. ++.+....   ...+++|++|++++| .++.+ +...+..+++|++|++++| .++.++..  
T Consensus        84 ~~~l~~L~~L~Ls~n~-i~~i~~~~---~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~--  154 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNH-IRTIEIGA---FNGLANLNTLELFDN-RLTTI-PNGAFVYLSKLKELWLRNN-PIESIPSY--  154 (440)
T ss_dssp             TSSCSSCCEEECCSSC-CCEECGGG---GTTCSSCCEEECCSS-CCSSC-CTTTSCSCSSCCEEECCSC-CCCEECTT--
T ss_pred             hhCCCCCCEEECCCCc-CCccChhh---ccCCccCCEEECCCC-cCCee-CHhHhhccccCceeeCCCC-cccccCHH--
Confidence            3445555555555543 22221110   023455556655555 33333 2222455556666666555 23333210  


Q ss_pred             cccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhh
Q 009754          223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENF  302 (526)
Q Consensus       223 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~  302 (526)
                             .+..+++|+.|+++++..+..++.  ..+..+++|++|++++| +++.++.                      
T Consensus       155 -------~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n-~l~~~~~----------------------  202 (440)
T 3zyj_A          155 -------AFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMC-NLREIPN----------------------  202 (440)
T ss_dssp             -------TTTTCTTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTS-CCSSCCC----------------------
T ss_pred             -------HhhhCcccCEeCCCCCCCcceeCc--chhhcccccCeecCCCC-cCccccc----------------------
Confidence                   334455666666655555444422  11445555666666553 3333220                      


Q ss_pred             hhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCCCCCCCCEEeeccc
Q 009754          303 LLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKC  381 (526)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c  381 (526)
                                  ...+++|+.|+++++ .++.+....+   ..+++|+.|++.++. ++.+ +..+..+++|++|+++++
T Consensus       203 ------------~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          203 ------------LTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             ------------CTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS
T ss_pred             ------------cCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC
Confidence                        113355666666554 3444433332   455566666665543 3332 334455566666666653


Q ss_pred             cCccccccchhhhhccCCceEEEecc
Q 009754          382 HGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       382 ~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                       .++.++.. .+..+++|+.|+++++
T Consensus       266 -~l~~~~~~-~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          266 -NLTLLPHD-LFTPLHHLERIHLHHN  289 (440)
T ss_dssp             -CCCCCCTT-TTSSCTTCCEEECCSS
T ss_pred             -CCCccChh-HhccccCCCEEEcCCC
Confidence             45554443 2245566666665553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.66  E-value=4.6e-15  Score=152.04  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=15.5

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (526)
                      +++|++|++++| .++.+.+ ..+..+++|++|++++|
T Consensus        98 l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           98 LHHLEVLQLGRN-SIRQIEV-GAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             CCCCCEEECCCC-ccCCcCh-hhccCcccCCEEECCCC
Confidence            444555555444 2333221 12444455555555444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.65  E-value=8.9e-16  Score=148.83  Aligned_cols=182  Identities=17%  Similarity=0.186  Sum_probs=101.3

Q ss_pred             CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (526)
                      .+++|++|+++++. ++.++...    ..+++|++|+++++. ++.+++...+..+++|++|++++|......+.     
T Consensus        76 ~~~~L~~L~Ls~n~-i~~l~~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----  144 (306)
T 2z66_A           76 GTTSLKYLDLSFNG-VITMSSNF----LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-----  144 (306)
T ss_dssp             SCSCCCEEECCSCS-EEEEEEEE----ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTT-----
T ss_pred             cccccCEEECCCCc-cccChhhc----CCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchh-----
Confidence            45666666666654 33332222    346677777777663 34333323366777777777777632222222     


Q ss_pred             cccCCCCCCCCccceEecCCCcccc-ccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhh
Q 009754          225 ADKEHRGPLFPKLYGLRLIDLPKLK-RFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFL  303 (526)
Q Consensus       225 ~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~  303 (526)
                           .+..+++|+.|+++++..-. ..+..   +..+++|++|++++| +++..++..+                    
T Consensus       145 -----~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~--------------------  195 (306)
T 2z66_A          145 -----IFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQC-QLEQLSPTAF--------------------  195 (306)
T ss_dssp             -----TTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTS-CCCEECTTTT--------------------
T ss_pred             -----hcccCcCCCEEECCCCccccccchhH---HhhCcCCCEEECCCC-CcCCcCHHHh--------------------
Confidence                 34556777777777653221 12222   456777777777774 4544433322                    


Q ss_pred             hccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCC-CCCEEeecccc
Q 009754          304 LAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE-NLEALEVSKCH  382 (526)
Q Consensus       304 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~c~  382 (526)
                                  ..+++|+.|+++++ .++.++...+   ..+++|+.|+++++......+..+..++ +|++|++++++
T Consensus       196 ------------~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          196 ------------NSLSSLQVLNMSHN-NFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ------------TTCTTCCEEECTTS-CCSBCCSGGG---TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ------------cCCCCCCEEECCCC-ccCccChhhc---cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence                        23467777777764 3444433222   5567777777777654444455556663 77777777753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.65  E-value=5e-15  Score=151.18  Aligned_cols=235  Identities=15%  Similarity=0.176  Sum_probs=132.2

Q ss_pred             hHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccc
Q 009754          136 IQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE  215 (526)
Q Consensus       136 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~  215 (526)
                      +..+|..+  .++++.|+++++. ++.+.... +  ..+++|++|++++| .++.+ +...+..+++|++|++++| .++
T Consensus        55 l~~iP~~~--~~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~L~~n-~l~  125 (440)
T 3zyj_A           55 LREVPDGI--STNTRLLNLHENQ-IQIIKVNS-F--KHLRHLEILQLSRN-HIRTI-EIGAFNGLANLNTLELFDN-RLT  125 (440)
T ss_dssp             CSSCCSCC--CTTCSEEECCSCC-CCEECTTT-T--SSCSSCCEEECCSS-CCCEE-CGGGGTTCSSCCEEECCSS-CCS
T ss_pred             cCcCCCCC--CCCCcEEEccCCc-CCeeCHHH-h--hCCCCCCEEECCCC-cCCcc-ChhhccCCccCCEEECCCC-cCC
Confidence            34455443  2667777777665 44332111 1  34677777777776 34444 3333667777777777776 455


Q ss_pred             hhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCcc
Q 009754          216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK  295 (526)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~  295 (526)
                      .++..         .+..+++|+.|+++++. ++.++.  ..+..+++|++|++++|..+..+++..+            
T Consensus       126 ~~~~~---------~~~~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~------------  181 (440)
T 3zyj_A          126 TIPNG---------AFVYLSKLKELWLRNNP-IESIPS--YAFNRIPSLRRLDLGELKRLSYISEGAF------------  181 (440)
T ss_dssp             SCCTT---------TSCSCSSCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCCEECTTTT------------
T ss_pred             eeCHh---------HhhccccCceeeCCCCc-ccccCH--HHhhhCcccCEeCCCCCCCcceeCcchh------------
Confidence            44321         34556777777777653 444422  1255667777777777665554443222            


Q ss_pred             ccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCCCCCCCC
Q 009754          296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLE  374 (526)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~  374 (526)
                                          .++++|+.|+++++ .++.++. .    ..+++|+.|+++++. ++.+ +..+..+++|+
T Consensus       182 --------------------~~l~~L~~L~L~~n-~l~~~~~-~----~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  234 (440)
T 3zyj_A          182 --------------------EGLSNLRYLNLAMC-NLREIPN-L----TPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQ  234 (440)
T ss_dssp             --------------------TTCSSCCEEECTTS-CCSSCCC-C----TTCSSCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred             --------------------hcccccCeecCCCC-cCccccc-c----CCCcccCEEECCCCc-cCccChhhhccCccCC
Confidence                                23467777777764 3444432 1    566677777777663 3333 45666677777


Q ss_pred             EEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccc
Q 009754          375 ALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLP  440 (526)
Q Consensus       375 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  440 (526)
                      +|+++++ .++.++.. .+..+++|++|+++++ .++.++.   +    ....+++|+.|++.++|
T Consensus       235 ~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~---~----~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          235 KLWMIQS-QIQVIERN-AFDNLQSLVEINLAHN-NLTLLPH---D----LFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EEECTTC-CCCEECTT-SSTTCTTCCEEECTTS-CCCCCCT---T----TTSSCTTCCEEECCSSC
T ss_pred             EEECCCC-ceeEEChh-hhcCCCCCCEEECCCC-CCCccCh---h----HhccccCCCEEEcCCCC
Confidence            7777764 45555443 2356677777777665 3444332   0    11235667777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.62  E-value=3.4e-16  Score=152.58  Aligned_cols=245  Identities=15%  Similarity=0.110  Sum_probs=135.8

Q ss_pred             cCCCCCcEEEeecCCCCceec-cCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccc
Q 009754          144 IGFRDMEYLQLSYFPHLKEIW-HGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE  222 (526)
Q Consensus       144 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  222 (526)
                      ..+++|++|+++++. ++.+. ...    ..+++|++|++++|. ++..++   +..+++|++|++++| .++.++    
T Consensus        31 ~~~~~L~~L~L~~n~-l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n-~l~~l~----   96 (317)
T 3o53_A           31 QSAWNVKELDLSGNP-LSQISAADL----APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELL----   96 (317)
T ss_dssp             TTGGGCSEEECTTSC-CCCCCHHHH----TTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSS-EEEEEE----
T ss_pred             ccCCCCCEEECcCCc-cCcCCHHHh----hCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCC-cccccc----
Confidence            345677777777764 33221 111    346777777777763 333323   667777777777776 344433    


Q ss_pred             cccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhh
Q 009754          223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENF  302 (526)
Q Consensus       223 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~  302 (526)
                                ..++|+.|+++++ .+..++.     ..+++|++|+++++ +++..++..+                   
T Consensus        97 ----------~~~~L~~L~l~~n-~l~~~~~-----~~~~~L~~L~l~~N-~l~~~~~~~~-------------------  140 (317)
T 3o53_A           97 ----------VGPSIETLHAANN-NISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE-------------------  140 (317)
T ss_dssp             ----------ECTTCCEEECCSS-CCSEEEE-----CCCSSCEEEECCSS-CCCSGGGBCT-------------------
T ss_pred             ----------CCCCcCEEECCCC-ccCCcCc-----cccCCCCEEECCCC-CCCCccchhh-------------------
Confidence                      2367777777765 3444422     24667777777764 4544432221                   


Q ss_pred             hhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecccc
Q 009754          303 LLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH  382 (526)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  382 (526)
                                   ..+++|+.|+++++ .++.+....+.  ..+++|+.|++++|. ++.++.. ..+++|++|+++++ 
T Consensus       141 -------------~~l~~L~~L~Ls~N-~l~~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N-  201 (317)
T 3o53_A          141 -------------GCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-  201 (317)
T ss_dssp             -------------GGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-
T ss_pred             -------------hccCCCCEEECCCC-CCCcccHHHHh--hccCcCCEEECCCCc-Ccccccc-cccccCCEEECCCC-
Confidence                         12367777777764 34444332221  345677777777653 5555332 33667777777774 


Q ss_pred             CccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccc-ceecCCCccCCCCCccEEE
Q 009754          383 GLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSL-TSFCLGNYALEFPSLKQVV  461 (526)
Q Consensus       383 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~  461 (526)
                      .++.++..  +..+++|++|+++++ .++.++.        ....+++|+.|++++++-. ..++.....  ++.|++++
T Consensus       202 ~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~--~~~L~~l~  268 (317)
T 3o53_A          202 KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVA  268 (317)
T ss_dssp             CCCEECGG--GGGGTTCSEEECTTS-CCCEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHT--CHHHHHHH
T ss_pred             cCCcchhh--hcccCcccEEECcCC-cccchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhc--cccceEEE
Confidence            45555542  356677777777765 4555433        1124567777777766433 223332222  66666666


Q ss_pred             EcCCCCcee
Q 009754          462 VRQCPKMKI  470 (526)
Q Consensus       462 l~~C~~l~~  470 (526)
                      +.+++.++.
T Consensus       269 l~~~~~l~~  277 (317)
T 3o53_A          269 KQTVKKLTG  277 (317)
T ss_dssp             HHHHHHHHS
T ss_pred             CCCchhccC
Confidence            665555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.62  E-value=6e-15  Score=142.95  Aligned_cols=182  Identities=20%  Similarity=0.194  Sum_probs=92.4

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      .++|++|+++++ .++.+ +...+..+++|++|++++| .++.+.....       ....+++|+.|+++++ .+..++.
T Consensus        27 ~~~l~~L~L~~n-~l~~i-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-------~~~~~~~L~~L~Ls~n-~i~~l~~   95 (306)
T 2z66_A           27 PSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSSN-GLSFKGCCSQ-------SDFGTTSLKYLDLSFN-GVITMSS   95 (306)
T ss_dssp             CTTCCEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS-CCCEEEEEEH-------HHHSCSCCCEEECCSC-SEEEEEE
T ss_pred             CCCCCEEECCCC-ccCcc-CHhHhhccccCCEEECCCC-ccCcccCccc-------ccccccccCEEECCCC-ccccChh
Confidence            356777777766 34444 3344567777777777766 3332210000       1223567777777765 3344433


Q ss_pred             CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  333 (526)
                      .   +..+++|++|+++++ +++..++.                               .....+++|+.|+++++. +.
T Consensus        96 ~---~~~l~~L~~L~l~~n-~l~~~~~~-------------------------------~~~~~l~~L~~L~l~~n~-l~  139 (306)
T 2z66_A           96 N---FLGLEQLEHLDFQHS-NLKQMSEF-------------------------------SVFLSLRNLIYLDISHTH-TR  139 (306)
T ss_dssp             E---EETCTTCCEEECTTS-EEESSTTT-------------------------------TTTTTCTTCCEEECTTSC-CE
T ss_pred             h---cCCCCCCCEEECCCC-cccccccc-------------------------------hhhhhccCCCEEECCCCc-CC
Confidence            2   446667777776663 33332210                               011234566666666542 33


Q ss_pred             EecccCChhhhhhcccceeEeccCcCcc-ccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          334 HLWKENDESNKAFANLESLEISECSKLQ-KLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      ......+   ..+++|+.|+++++.... .+|..+..+++|++|+++++ .++.++.. .+..+++|++|+++++
T Consensus       140 ~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          140 VAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             ECSTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS
T ss_pred             ccchhhc---ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHH-HhcCCCCCCEEECCCC
Confidence            3332222   455666666666653222 24555566666666666664 34444332 2244555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.62  E-value=1.4e-15  Score=148.25  Aligned_cols=130  Identities=11%  Similarity=0.072  Sum_probs=65.7

Q ss_pred             cccceeEeccCcCcccc-CCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccccccc
Q 009754          347 ANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDC  425 (526)
Q Consensus       347 ~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~  425 (526)
                      ++|+.|+++++. ++.+ +..+..+++|++|+++++ .+..++...+...+++|++|+++++ .++.+...         
T Consensus       120 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~---------  187 (317)
T 3o53_A          120 QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ---------  187 (317)
T ss_dssp             SSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC---------
T ss_pred             CCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCcccccc---------
Confidence            445555555442 2222 223444555555555553 3444333333334556666666554 24433220         


Q ss_pred             ccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754          426 NVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       426 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~  492 (526)
                      ..+++|++|+++++ .++.++.....  +++|++|+++++ .++.+|..+..+++|+.++++++.+.
T Consensus       188 ~~l~~L~~L~Ls~N-~l~~l~~~~~~--l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          188 VVFAKLKTLDLSSN-KLAFMGPEFQS--AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCCTTCCEEECCSS-CCCEECGGGGG--GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             cccccCCEEECCCC-cCCcchhhhcc--cCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence            12556666666664 45555544333  566666666654 45556655555666666666555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.61  E-value=3.9e-17  Score=167.95  Aligned_cols=383  Identities=17%  Similarity=0.106  Sum_probs=222.0

Q ss_pred             cccceeEEeeccCceeeccc--ccCCcCCCceEEecccccccE-----eccccccccccccccccccceeeecccccccc
Q 009754            2 IFLLFYFFNIHTHAHTFAYF--QVGIPSSLVNLNVSRCDKIEE-----IIRHVGEEAKENRIAFSKLKVLILDYLPTLTS   74 (526)
Q Consensus         2 ~~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~c~~l~~-----l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~   74 (526)
                      +.+.++.||++.........  .+..+++|++|++++| .+..     ++..+..        +++|++|+++++. +++
T Consensus         1 l~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~--------~~~L~~L~Ls~n~-l~~   70 (461)
T 1z7x_W            1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRV--------NPALAELNLRSNE-LGD   70 (461)
T ss_dssp             -CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHT--------CTTCCEEECTTCC-CHH
T ss_pred             CCccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHh--------CCCcCEEeCCCCc-CCh
Confidence            35788999998665432222  2677899999999998 4552     3333333        7899999999854 443


Q ss_pred             ccccCceecCC----CccEEEecCCCCcc-----ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhh-c
Q 009754           75 FCLENYTLEFP----SLERVSMTHCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEM-I  144 (526)
Q Consensus        75 ~~~~~~~~~~~----~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  144 (526)
                      .........++    +|++|++++|. ++     .++..+..+++|++|+++++.-          .......+...+ .
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i----------~~~~~~~l~~~l~~  139 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL----------GDAGLQLLCEGLLD  139 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC----------HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcC----------chHHHHHHHHHHhc
Confidence            22221122344    79999999995 44     4566667788999999984210          001122233332 2


Q ss_pred             CCCCCcEEEeecCCCCceeccCCCCC--cCCCCCccEEEEecCCCcccCCChHHH----hcCCCCCeeeeccccccch--
Q 009754          145 GFRDMEYLQLSYFPHLKEIWHGQALP--VSFFNNLARLVVDDCTNMSSAIPANLL----RCLNNLQWLEVRNCDSIEE--  216 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~~~~~~l----~~l~~L~~L~l~~~~~l~~--  216 (526)
                      ..++|++|+++++. ++...... ++  ...+++|++|++++|. +++.....+.    ...++|++|++++| .++.  
T Consensus       140 ~~~~L~~L~L~~n~-l~~~~~~~-l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~  215 (461)
T 1z7x_W          140 PQCRLEKLQLEYCS-LSAASCEP-LASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDN  215 (461)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHH-HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTH
T ss_pred             CCCcceEEECCCCC-CCHHHHHH-HHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHH
Confidence            35689999998875 43211100 00  0236788999988875 4332111111    13568899999888 3443  


Q ss_pred             ---hccccccccccCCCCCCCCccceEecCCCccccccccC---CCccccCCCcceEeeecCCCCccc-----c-----C
Q 009754          217 ---VLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF---TGNIIELPELQHLTIQNCPDMETF-----I-----S  280 (526)
Q Consensus       217 ---~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~-----~-----~  280 (526)
                         ++.          .+..+++|++|+++++. +++....   ......+++|++|++++| +++..     +     .
T Consensus       216 ~~~l~~----------~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~  283 (461)
T 1z7x_W          216 CRDLCG----------IVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAK  283 (461)
T ss_dssp             HHHHHH----------HHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHC
T ss_pred             HHHHHH----------HHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhC
Confidence               222          23457888888888873 3432100   000225788888888886 56652     2     3


Q ss_pred             cccceeeecCCCCcccc--chhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCC-hhhhhhcccceeEeccC
Q 009754          281 NSVVHVTTDNKEPQKLT--SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEND-ESNKAFANLESLEISEC  357 (526)
Q Consensus       281 ~~L~~L~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~l~~L~~L~l~~c  357 (526)
                      ..++.|+++++.+....  .+....           ....++|+.|++++|. ++......+ .....+++|+.|++++|
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l-----------~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETL-----------LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHH-----------TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCcceEECCCCCCchHHHHHHHHHh-----------ccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC
Confidence            57888888887654311  111110           0123699999999874 433211111 11256799999999988


Q ss_pred             cCcccc-C----CCCC-CCCCCCEEeeccccCccc-----cccchhhhhccCCceEEEecccCcceeeccCCcccccccc
Q 009754          358 SKLQKL-V----PPSW-HLENLEALEVSKCHGLIN-----LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCN  426 (526)
Q Consensus       358 ~~l~~l-~----~~~~-~l~~L~~L~l~~c~~l~~-----l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~  426 (526)
                      . +++. +    ..+. ..++|++|++++| .+++     ++.  .+..+++|++|++++++ +++.....-...  ...
T Consensus       352 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~--~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~--l~~  424 (461)
T 1z7x_W          352 R-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAA--TLLANHSLRELDLSNNC-LGDAGILQLVES--VRQ  424 (461)
T ss_dssp             B-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH--HHHHCCCCCEEECCSSS-CCHHHHHHHHHH--HTS
T ss_pred             c-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHH--HHHhCCCccEEECCCCC-CCHHHHHHHHHH--hcc
Confidence            4 4432 1    1222 2579999999997 4553     222  34568999999999874 443211000000  001


Q ss_pred             cccccceeeccccc
Q 009754          427 VFKELRYLELYCLP  440 (526)
Q Consensus       427 ~~~~L~~L~l~~c~  440 (526)
                      ...+|+.|.+.++.
T Consensus       425 ~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          425 PGCLLEQLVLYDIY  438 (461)
T ss_dssp             TTCCCCEEECTTCC
T ss_pred             CCcchhheeecccc
Confidence            23468888877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.60  E-value=6.8e-15  Score=141.03  Aligned_cols=183  Identities=18%  Similarity=0.129  Sum_probs=98.4

Q ss_pred             CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  252 (526)
                      .+++|++|+++++ .++.+.+. .+..+++|++|++++|..++.++..         .+..+++|+.|+++++. +..++
T Consensus        54 ~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~  121 (285)
T 1ozn_A           54 ACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPA---------TFHGLGRLHTLHLDRCG-LQELG  121 (285)
T ss_dssp             TCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTT---------TTTTCTTCCEEECTTSC-CCCCC
T ss_pred             cCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHH---------HhcCCcCCCEEECCCCc-CCEEC
Confidence            3455566666555 23333222 2555666666666665434443210         33455666666666543 23321


Q ss_pred             cCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754          253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (526)
Q Consensus       253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  332 (526)
                      .  ..+..+++|++|+++++ +++..++..+                                ..+++|+.|+++++ .+
T Consensus       122 ~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~--------------------------------~~l~~L~~L~l~~n-~l  165 (285)
T 1ozn_A          122 P--GLFRGLAALQYLYLQDN-ALQALPDDTF--------------------------------RDLGNLTHLFLHGN-RI  165 (285)
T ss_dssp             T--TTTTTCTTCCEEECCSS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CC
T ss_pred             H--hHhhCCcCCCEEECCCC-cccccCHhHh--------------------------------ccCCCccEEECCCC-cc
Confidence            1  11445666666666663 3443332221                                23466777777664 45


Q ss_pred             eEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (526)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  408 (526)
                      +.++...+   ..+++|+.|+++++..-...|..+..+++|++|+++++ .++.++.. .+..+++|++|++++++
T Consensus       166 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          166 SSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred             cccCHHHh---cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCC
Confidence            55554433   55677777777776433333566667777777777774 45555543 23566777777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=2.7e-14  Score=141.09  Aligned_cols=226  Identities=14%  Similarity=0.096  Sum_probs=133.2

Q ss_pred             CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (526)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  254 (526)
                      +++++|+++++ .++.+ +.+.++++++|++|++++|...+.++..         .+..+++++.+...++..+..++. 
T Consensus        30 ~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---------~f~~L~~l~~~l~~~~N~l~~l~~-   97 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEAD---------VFSNLPKLHEIRIEKANNLLYINP-   97 (350)
T ss_dssp             TTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTT---------SBCSCTTCCEEEEEEETTCCEECT-
T ss_pred             CCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccChh---------HhhcchhhhhhhcccCCcccccCc-
Confidence            56677777666 35554 3333666777777777776544444320         234456666555555555665532 


Q ss_pred             CCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE
Q 009754          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH  334 (526)
Q Consensus       255 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  334 (526)
                       +.+..+++|++|+++++ +++..++...                                ....++..+++.++..+..
T Consensus        98 -~~f~~l~~L~~L~l~~n-~l~~~~~~~~--------------------------------~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           98 -EAFQNLPNLQYLLISNT-GIKHLPDVHK--------------------------------IHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             -TSBCCCTTCCEEEEEEE-CCSSCCCCTT--------------------------------CCBSSCEEEEEESCTTCCE
T ss_pred             -hhhhhcccccccccccc-ccccCCchhh--------------------------------cccchhhhhhhcccccccc
Confidence             12556777777777763 4444432111                                0124556666666666666


Q ss_pred             ecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceee
Q 009754          335 LWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQII  414 (526)
Q Consensus       335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~  414 (526)
                      ++...+.  .....++.|+++++ .++.++.......+|+++++.+++.++.++... +..+++|++|+++++ +++.++
T Consensus       144 l~~~~f~--~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N-~l~~lp  218 (350)
T 4ay9_X          144 IERNSFV--GLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSLP  218 (350)
T ss_dssp             ECTTSST--TSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS-CCCCCC
T ss_pred             ccccchh--hcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCC-CcCccC
Confidence            6654432  22345667777664 466666666666677777777767777776643 356777777777765 466555


Q ss_pred             ccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcC
Q 009754          415 QLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQ  464 (526)
Q Consensus       415 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~  464 (526)
                      .          ..|.+|+.|.+.++.+++.+|. ..  .+++|+.+++.+
T Consensus       219 ~----------~~~~~L~~L~~l~~~~l~~lP~-l~--~l~~L~~l~l~~  255 (350)
T 4ay9_X          219 S----------YGLENLKKLRARSTYNLKKLPT-LE--KLVALMEASLTY  255 (350)
T ss_dssp             S----------SSCTTCCEEECTTCTTCCCCCC-TT--TCCSCCEEECSC
T ss_pred             h----------hhhccchHhhhccCCCcCcCCC-ch--hCcChhhCcCCC
Confidence            4          2466777777777777777764 22  267777777753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.57  E-value=2.4e-14  Score=133.47  Aligned_cols=83  Identities=16%  Similarity=0.138  Sum_probs=40.2

Q ss_pred             CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCC
Q 009754          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT  255 (526)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  255 (526)
                      +|++|+++++ .++.+++ ..+..+++|++|++++|..++.++..         .+..+++|+.|++++|..++.++.  
T Consensus        32 ~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~---------~f~~l~~L~~L~l~~~n~l~~i~~--   98 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESH---------SFYNLSKVTHIEIRNTRNLTYIDP--   98 (239)
T ss_dssp             TCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTT---------TEESCTTCCEEEEEEETTCCEECT--
T ss_pred             cccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHh---------HcCCCcCCcEEECCCCCCeeEcCH--
Confidence            5556666555 2343322 22555666666666655434444320         223455556666555444444421  


Q ss_pred             CccccCCCcceEeeec
Q 009754          256 GNIIELPELQHLTIQN  271 (526)
Q Consensus       256 ~~~~~~~~L~~L~l~~  271 (526)
                      ..+..+++|++|++++
T Consensus        99 ~~f~~l~~L~~L~l~~  114 (239)
T 2xwt_C           99 DALKELPLLKFLGIFN  114 (239)
T ss_dssp             TSEECCTTCCEEEEEE
T ss_pred             HHhCCCCCCCEEeCCC
Confidence            1144555555555555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.57  E-value=4.1e-14  Score=135.56  Aligned_cols=184  Identities=20%  Similarity=0.181  Sum_probs=120.1

Q ss_pred             hcCCCCCcEEEeecCCCCcee-ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccc
Q 009754          143 MIGFRDMEYLQLSYFPHLKEI-WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE  221 (526)
Q Consensus       143 ~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~  221 (526)
                      +..+++|++|+++++. ++.+ +...    ..+++|++|++++|..++.+.+. .+..+++|++|++++|. +..++.. 
T Consensus        52 ~~~~~~L~~L~l~~n~-l~~~~~~~~----~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~-  123 (285)
T 1ozn_A           52 FRACRNLTILWLHSNV-LARIDAAAF----TGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCG-LQELGPG-  123 (285)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECTTTT----TTCTTCCEEECCSCTTCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCTT-
T ss_pred             cccCCCCCEEECCCCc-cceeCHhhc----CCccCCCEEeCCCCCCccccCHH-HhcCCcCCCEEECCCCc-CCEECHh-
Confidence            4456777777777664 4433 2222    45678888888887545555332 36778888888888873 4443210 


Q ss_pred             ccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhh
Q 009754          222 EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEEN  301 (526)
Q Consensus       222 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~  301 (526)
                              .+..+++|+.|+++++ .++.++.  ..+..+++|++|+++++ +++..++..+                  
T Consensus       124 --------~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~------------------  173 (285)
T 1ozn_A          124 --------LFRGLAALQYLYLQDN-ALQALPD--DTFRDLGNLTHLFLHGN-RISSVPERAF------------------  173 (285)
T ss_dssp             --------TTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS-CCCEECTTTT------------------
T ss_pred             --------HhhCCcCCCEEECCCC-cccccCH--hHhccCCCccEEECCCC-cccccCHHHh------------------
Confidence                    4556788888888876 3444432  12557888888888884 5655543322                  


Q ss_pred             hhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeecc
Q 009754          302 FLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSK  380 (526)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~  380 (526)
                                    ..+++|+.|+++++ .++.+....+   ..+++|+.|+++++ .++.++. .+..+++|++|++++
T Consensus       174 --------------~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          174 --------------RGLHSLDRLLLHQN-RVAHVHPHAF---RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             --------------TTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred             --------------cCccccCEEECCCC-cccccCHhHc---cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence                          24578889998885 4555544333   67889999999887 4555653 467789999999998


Q ss_pred             ccC
Q 009754          381 CHG  383 (526)
Q Consensus       381 c~~  383 (526)
                      ++-
T Consensus       235 N~~  237 (285)
T 1ozn_A          235 NPW  237 (285)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=8.1e-15  Score=151.31  Aligned_cols=237  Identities=15%  Similarity=0.110  Sum_probs=137.5

Q ss_pred             CCCCCcEEEeecCCCCceec-cCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccccc
Q 009754          145 GFRDMEYLQLSYFPHLKEIW-HGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQ  223 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  223 (526)
                      .+++|+.|+++++. ++.+. ...    ..+++|++|++++|. ++..++   +..+++|++|++++| .++.++.    
T Consensus        32 ~~~~L~~L~Ls~n~-l~~~~~~~~----~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~----   97 (487)
T 3oja_A           32 SAWNVKELDLSGNP-LSQISAADL----APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELLV----   97 (487)
T ss_dssp             TGGGCCEEECCSSC-CCCCCGGGG----TTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEEEE----
T ss_pred             cCCCccEEEeeCCc-CCCCCHHHH----hCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCCCC----
Confidence            34478888887765 33221 112    356777777777764 433333   667777777777777 4544432    


Q ss_pred             ccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhh
Q 009754          224 NADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFL  303 (526)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~  303 (526)
                                .++|+.|+++++ .+..++.     ..+++|+.|++++| .++..++..+                    
T Consensus        98 ----------~~~L~~L~L~~N-~l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~--------------------  140 (487)
T 3oja_A           98 ----------GPSIETLHAANN-NISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE--------------------  140 (487)
T ss_dssp             ----------CTTCCEEECCSS-CCCCEEE-----CCCSSCEEEECCSS-CCCSGGGBCG--------------------
T ss_pred             ----------CCCcCEEECcCC-cCCCCCc-----cccCCCCEEECCCC-CCCCCCchhh--------------------
Confidence                      367777777775 3444422     24567777777774 4544433222                    


Q ss_pred             hccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccC
Q 009754          304 LAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHG  383 (526)
Q Consensus       304 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  383 (526)
                                  +.+++|+.|+++++ .++.+....+.  ..+++|+.|++++|. ++.++.. ..+++|++|+++++ .
T Consensus       141 ------------~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~l~~L~~L~Ls~N~-l~~~~~~-~~l~~L~~L~Ls~N-~  202 (487)
T 3oja_A          141 ------------GCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-K  202 (487)
T ss_dssp             ------------GGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-C
T ss_pred             ------------cCCCCCCEEECCCC-CCCCcChHHHh--hhCCcccEEecCCCc-ccccccc-ccCCCCCEEECCCC-C
Confidence                        23478888888775 34443333221  356788888888764 5555433 34777888888874 5


Q ss_pred             ccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccc-ceecCCCccCCCCCccEEEE
Q 009754          384 LINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSL-TSFCLGNYALEFPSLKQVVV  462 (526)
Q Consensus       384 l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~l  462 (526)
                      ++.+++.  +..+++|+.|+++++ .++.++.        ....+++|+.|++.+++-. ..++.....  ++.|+.+++
T Consensus       203 l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~--------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~--l~~L~~l~~  269 (487)
T 3oja_A          203 LAFMGPE--FQSAAGVTWISLRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVAK  269 (487)
T ss_dssp             CCEECGG--GGGGTTCSEEECTTS-CCCEECT--------TCCCCTTCCEEECTTCCBCHHHHHHHHTT--CHHHHHHHH
T ss_pred             CCCCCHh--HcCCCCccEEEecCC-cCcccch--------hhccCCCCCEEEcCCCCCcCcchHHHHHh--CCCCcEEec
Confidence            6666553  456777888888775 4555443        1134577777777776433 123322222  555665555


Q ss_pred             c
Q 009754          463 R  463 (526)
Q Consensus       463 ~  463 (526)
                      .
T Consensus       270 ~  270 (487)
T 3oja_A          270 Q  270 (487)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=2.9e-14  Score=147.13  Aligned_cols=236  Identities=11%  Similarity=0.033  Sum_probs=127.4

Q ss_pred             CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  252 (526)
                      .+++|++|++++| .++.+++ ..+..+++|++|++++|. +...+           .+..+++|+.|+++++ .++.++
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~-----------~l~~l~~L~~L~Ls~N-~l~~l~   96 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETL-----------DLESLSTLRTLDLNNN-YVQELL   96 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSC-CEEEE-----------ECTTCTTCCEEECCSS-EEEEEE
T ss_pred             cCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCC-CCCCc-----------ccccCCCCCEEEecCC-cCCCCC
Confidence            3568888888887 4555533 337788888888888873 44332           2345778888888876 344432


Q ss_pred             cCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754          253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (526)
Q Consensus       253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  332 (526)
                             ..++|++|++++| .+...++.                                   .+++|+.|+++++ .+
T Consensus        97 -------~~~~L~~L~L~~N-~l~~~~~~-----------------------------------~l~~L~~L~L~~N-~l  132 (487)
T 3oja_A           97 -------VGPSIETLHAANN-NISRVSCS-----------------------------------RGQGKKNIYLANN-KI  132 (487)
T ss_dssp             -------ECTTCCEEECCSS-CCCCEEEC-----------------------------------CCSSCEEEECCSS-CC
T ss_pred             -------CCCCcCEEECcCC-cCCCCCcc-----------------------------------ccCCCCEEECCCC-CC
Confidence                   2367777777774 34433211                                   2366777777664 34


Q ss_pred             eEecccCChhhhhhcccceeEeccCcCccccCCCCC-CCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcc
Q 009754          333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSW-HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIE  411 (526)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~  411 (526)
                      +.++...+   +.+++|+.|+++++..-...|..+. .+++|++|+++++ .++.++..   ..+++|++|+++++ .++
T Consensus       133 ~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~---~~l~~L~~L~Ls~N-~l~  204 (487)
T 3oja_A          133 TMLRDLDE---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ---VVFAKLKTLDLSSN-KLA  204 (487)
T ss_dssp             CSGGGBCG---GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC---CCCTTCCEEECCSS-CCC
T ss_pred             CCCCchhh---cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc---ccCCCCCEEECCCC-CCC
Confidence            43332222   5566666666666532222333333 4566666666664 34444331   23566666666654 344


Q ss_pred             eeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCc-eeccCCCCCCCCcceEEe
Q 009754          412 QIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKM-KIFSQGVLDTPMLNKVNV  486 (526)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l-~~lp~~~~~~~~L~~l~l  486 (526)
                      .++.        ....+++|+.|+++++ .++.+|.....  +++|++|++.+++-. ..+|..+..++.++.+.+
T Consensus       205 ~~~~--------~~~~l~~L~~L~Ls~N-~l~~lp~~l~~--l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          205 FMGP--------EFQSAAGVTWISLRNN-KLVLIEKALRF--SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             EECG--------GGGGGTTCSEEECTTS-CCCEECTTCCC--CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCH--------hHcCCCCccEEEecCC-cCcccchhhcc--CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            4432        0123455666666554 44555554333  556666666554333 233333334444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.54  E-value=7.6e-15  Score=144.20  Aligned_cols=204  Identities=14%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccc--cccC
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT--FSHG  104 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~  104 (526)
                      ..++.++++++ .+.  +..+....      .++++.|++.+.. ++.....  ...+++|++|++++|. ++.  ++..
T Consensus        47 ~~~~~l~l~~~-~~~--~~~~~~~~------~~~l~~L~l~~n~-l~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~~  113 (336)
T 2ast_B           47 SLWQTLDLTGK-NLH--PDVTGRLL------SQGVIAFRCPRSF-MDQPLAE--HFSPFRVQHMDLSNSV-IEVSTLHGI  113 (336)
T ss_dssp             TTSSEEECTTC-BCC--HHHHHHHH------HTTCSEEECTTCE-ECSCCCS--CCCCBCCCEEECTTCE-ECHHHHHHH
T ss_pred             hhheeeccccc-cCC--HHHHHhhh------hccceEEEcCCcc-ccccchh--hccCCCCCEEEccCCC-cCHHHHHHH
Confidence            34677777764 333  22222200      1566777766532 3332222  2346777777777664 331  4444


Q ss_pred             cccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce--eccCCCCCcCCCCCccEEEE
Q 009754          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE--IWHGQALPVSFFNNLARLVV  182 (526)
Q Consensus       105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~l  182 (526)
                      +..+++|++|+++++              ......+..+..+++|++|+++++..+++  +....    ..+++|++|++
T Consensus       114 ~~~~~~L~~L~L~~~--------------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----~~~~~L~~L~l  175 (336)
T 2ast_B          114 LSQCSKLQNLSLEGL--------------RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL----SSCSRLDELNL  175 (336)
T ss_dssp             HTTBCCCSEEECTTC--------------BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH----HHCTTCCEEEC
T ss_pred             HhhCCCCCEEeCcCc--------------ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH----hcCCCCCEEcC
Confidence            445666666666631              11123344445566666666666643442  11111    23556666666


Q ss_pred             ecCCCcccCCChHHHhcCC-CCCeeeecccc-ccc--hhccccccccccCCCCCCCCccceEecCCCccccccccCCCcc
Q 009754          183 DDCTNMSSAIPANLLRCLN-NLQWLEVRNCD-SIE--EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI  258 (526)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~-~l~--~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  258 (526)
                      ++|..+++......+..++ +|++|++++|. .++  .++.          ....+++|+.|++++|..+++... . .+
T Consensus       176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~----------~~~~~~~L~~L~l~~~~~l~~~~~-~-~l  243 (336)
T 2ast_B          176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST----------LVRRCPNLVHLDLSDSVMLKNDCF-Q-EF  243 (336)
T ss_dssp             CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----------HHHHCTTCSEEECTTCTTCCGGGG-G-GG
T ss_pred             CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----------HHhhCCCCCEEeCCCCCcCCHHHH-H-HH
Confidence            6654343211122255566 66666666653 222  1222          122355666666666543332110 0 14


Q ss_pred             ccCCCcceEeeecCC
Q 009754          259 IELPELQHLTIQNCP  273 (526)
Q Consensus       259 ~~~~~L~~L~l~~c~  273 (526)
                      ..+++|++|++++|.
T Consensus       244 ~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          244 FQLNYLQHLSLSRCY  258 (336)
T ss_dssp             GGCTTCCEEECTTCT
T ss_pred             hCCCCCCEeeCCCCC
Confidence            455666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.53  E-value=7.4e-14  Score=130.08  Aligned_cols=209  Identities=10%  Similarity=0.079  Sum_probs=152.3

Q ss_pred             eecccccCCcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCC
Q 009754           17 TFAYFQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHC   95 (526)
Q Consensus        17 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c   95 (526)
                      ...+|.  ..++|++|+++++ .+..+|. .+.+        +++|++|++.++..++.++... ...+++|++|++++|
T Consensus        23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~~~~~--------l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~   90 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIET-HLRTIPSHAFSN--------LPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNT   90 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESC-CCSEECTTTTTT--------CTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEE
T ss_pred             ccccCC--CCCcccEEEEeCC-cceEECHHHccC--------CCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCC
Confidence            444555  3458999999996 7899877 4555        8999999999876677776654 457999999999986


Q ss_pred             CCccccccC-cccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCc---EEEeecCCCCceeccCCCCCc
Q 009754           96 PNMKTFSHG-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDME---YLQLSYFPHLKEIWHGQALPV  171 (526)
Q Consensus        96 ~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~  171 (526)
                      ..++.++.. +..+++|++|++++               +.+..++. +..+++|+   .|++++++.++.+.... +  
T Consensus        91 n~l~~i~~~~f~~l~~L~~L~l~~---------------n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~--  151 (239)
T 2xwt_C           91 RNLTYIDPDALKELPLLKFLGIFN---------------TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-F--  151 (239)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEEE---------------ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-T--
T ss_pred             CCeeEcCHHHhCCCCCCCEEeCCC---------------CCCccccc-cccccccccccEEECCCCcchhhcCccc-c--
Confidence            578877754 45689999999983               23333444 55677777   99999985577654332 1  


Q ss_pred             CCCCCcc-EEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCC-CccceEecCCCcccc
Q 009754          172 SFFNNLA-RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLF-PKLYGLRLIDLPKLK  249 (526)
Q Consensus       172 ~~l~~L~-~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~  249 (526)
                      ..+++|+ +|+++++ .++.++ ...+.. ++|++|++++|..++.++..         ....+ ++|+.|+++++ .++
T Consensus       152 ~~l~~L~~~L~l~~n-~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~---------~~~~l~~~L~~L~l~~N-~l~  218 (239)
T 2xwt_C          152 QGLCNETLTLKLYNN-GFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKD---------AFGGVYSGPSLLDVSQT-SVT  218 (239)
T ss_dssp             TTTBSSEEEEECCSC-CCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTT---------TTTTCSBCCSEEECTTC-CCC
T ss_pred             cchhcceeEEEcCCC-CCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHH---------HhhccccCCcEEECCCC-ccc
Confidence            4578999 9999988 455553 333444 89999999999657766431         44567 89999999985 566


Q ss_pred             ccccCCCccccCCCcceEeeecCCC
Q 009754          250 RFCNFTGNIIELPELQHLTIQNCPD  274 (526)
Q Consensus       250 ~~~~~~~~~~~~~~L~~L~l~~c~~  274 (526)
                      .++..     .+++|+.|++.++..
T Consensus       219 ~l~~~-----~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          219 ALPSK-----GLEHLKELIARNTWT  238 (239)
T ss_dssp             CCCCT-----TCTTCSEEECTTC--
T ss_pred             cCChh-----HhccCceeeccCccC
Confidence            66432     789999999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=3.3e-13  Score=133.26  Aligned_cols=213  Identities=21%  Similarity=0.211  Sum_probs=118.0

Q ss_pred             hhHHhhh-hhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccc
Q 009754          135 TIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS  213 (526)
Q Consensus       135 ~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~  213 (526)
                      .+..++. .+..+++|++|+|+++.-.+.+.... +  ..+++++++...++.+++.+++ +.+..+++|++|++++| .
T Consensus        41 ~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f--~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n-~  115 (350)
T 4ay9_X           41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-F--SNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNT-G  115 (350)
T ss_dssp             CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-B--CSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEE-C
T ss_pred             cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-h--hcchhhhhhhcccCCcccccCc-hhhhhcccccccccccc-c
Confidence            3344442 34456666666666665333222211 0  2345555554444445555533 33566777777777666 4


Q ss_pred             cchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccC-CCcceEeeecCCCCccccCcccceeeecCCC
Q 009754          214 IEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL-PELQHLTIQNCPDMETFISNSVVHVTTDNKE  292 (526)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~  292 (526)
                      +..++..         ......++..|.+.++..+..++...  +..+ ..++.|++++ ++++.+++..          
T Consensus       116 l~~~~~~---------~~~~~~~l~~l~l~~~~~i~~l~~~~--f~~~~~~l~~L~L~~-N~i~~i~~~~----------  173 (350)
T 4ay9_X          116 IKHLPDV---------HKIHSLQKVLLDIQDNINIHTIERNS--FVGLSFESVILWLNK-NGIQEIHNSA----------  173 (350)
T ss_dssp             CSSCCCC---------TTCCBSSCEEEEEESCTTCCEECTTS--STTSBSSCEEEECCS-SCCCEECTTS----------
T ss_pred             cccCCch---------hhcccchhhhhhhccccccccccccc--hhhcchhhhhhcccc-ccccCCChhh----------
Confidence            4444321         12223445556665555555543221  2222 3456666665 3444433221          


Q ss_pred             CccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCC
Q 009754          293 PQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLEN  372 (526)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~  372 (526)
                                             ...++|+++.+.++..++.++...+   ..+++|+.|+++++ .++.+|...  +.+
T Consensus       174 -----------------------f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~~--~~~  224 (350)
T 4ay9_X          174 -----------------------FNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSYG--LEN  224 (350)
T ss_dssp             -----------------------STTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSSS--CTT
T ss_pred             -----------------------ccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChhh--hcc
Confidence                                   1225677777777667777776554   66778888888775 467776532  567


Q ss_pred             CCEEeeccccCccccccchhhhhccCCceEEEec
Q 009754          373 LEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD  406 (526)
Q Consensus       373 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  406 (526)
                      |++|.+.++.+++.+|.   ...+++|+.+++.+
T Consensus       225 L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          225 LKKLRARSTYNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             CCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred             chHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence            77777777777777775   35677777777754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.51  E-value=9.9e-15  Score=143.39  Aligned_cols=227  Identities=11%  Similarity=0.085  Sum_probs=152.3

Q ss_pred             eeEEeeccCceeecccccCCc--CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceec
Q 009754            6 FYFFNIHTHAHTFAYFQVGIP--SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLE   83 (526)
Q Consensus         6 l~~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (526)
                      ++.++++.....  ...+..+  ++++.|+++++ .+...+..+.+        +++|++|+++++. +++.........
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~--------~~~L~~L~L~~~~-l~~~~~~~~~~~  116 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFS--------PFRVQHMDLSNSV-IEVSTLHGILSQ  116 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCC--------CBCCCEEECTTCE-ECHHHHHHHHTT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCc-cccccchhhcc--------CCCCCEEEccCCC-cCHHHHHHHHhh
Confidence            445555543322  2334445  89999999996 56666555444        8899999999875 443211222456


Q ss_pred             CCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCcee
Q 009754           84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI  163 (526)
Q Consensus        84 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  163 (526)
                      +++|++|++++|..-...+..+..+++|++|+++++..            -....++..+..+++|++|+++++..+++.
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~------------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  184 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG------------FSEFALQTLLSSCSRLDELNLSWCFDFTEK  184 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS------------CCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC------------CCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence            89999999999963335556667789999999995311            011134555667899999999999656642


Q ss_pred             --ccCCCCCcCCCC-CccEEEEecCC-CcccCCChHHHhcCCCCCeeeeccccccch-hccccccccccCCCCCCCCccc
Q 009754          164 --WHGQALPVSFFN-NLARLVVDDCT-NMSSAIPANLLRCLNNLQWLEVRNCDSIEE-VLHLEEQNADKEHRGPLFPKLY  238 (526)
Q Consensus       164 --~~~~~~~~~~l~-~L~~L~l~~c~-~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~~l~~L~  238 (526)
                        ....    ..++ +|++|++++|. .+++......+..+++|++|++++|..++. .+.          .+..+++|+
T Consensus       185 ~~~~~~----~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~----------~l~~l~~L~  250 (336)
T 2ast_B          185 HVQVAV----AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----------EFFQLNYLQ  250 (336)
T ss_dssp             HHHHHH----HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG----------GGGGCTTCC
T ss_pred             HHHHHH----HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH----------HHhCCCCCC
Confidence              2212    4578 99999999985 343211123477899999999999975543 222          345679999


Q ss_pred             eEecCCCccccccccCCCccccCCCcceEeeecC
Q 009754          239 GLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNC  272 (526)
Q Consensus       239 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  272 (526)
                      .|++++|..+.+.  ....+..+++|+.|++++|
T Consensus       251 ~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          251 HLSLSRCYDIIPE--TLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EEECTTCTTCCGG--GGGGGGGCTTCCEEECTTS
T ss_pred             EeeCCCCCCCCHH--HHHHHhcCCCCCEEeccCc
Confidence            9999998744432  1112668999999999997

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=3.3e-15  Score=145.17  Aligned_cols=258  Identities=16%  Similarity=0.077  Sum_probs=141.3

Q ss_pred             ccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee-------cCCCccEEEecC
Q 009754           22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL-------EFPSLERVSMTH   94 (526)
Q Consensus        22 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-------~~~~L~~L~l~~   94 (526)
                      .++..++|+.|+++++ .+ .+|..+..          .|++|+++++. ++.........       .+++|++|++++
T Consensus        38 ~~~~~~~L~~l~l~~n-~l-~~p~~~~~----------~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  104 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVD-TE-ADLGQFTD----------IIKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLEN  104 (312)
T ss_dssp             EEEEEEECTTHHHHCC-TT-CCCHHHHH----------HHHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             EEccCCCceeEeeccc-cc-ccHHHHHH----------HHhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccC
Confidence            3456677888888885 45 66665433          36666666532 22211111111       377788888887


Q ss_pred             CCCccccccCc--ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCC-CCCc
Q 009754           95 CPNMKTFSHGI--LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQ-ALPV  171 (526)
Q Consensus        95 c~~l~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~  171 (526)
                      |..-...|..+  ..+++|++|+++                                      ++. ++..+... .++.
T Consensus       105 n~l~~~~~~~~~~~~l~~L~~L~Ls--------------------------------------~N~-l~~~~~~~~~l~~  145 (312)
T 1wwl_A          105 LEVTGTAPPPLLEATGPDLNILNLR--------------------------------------NVS-WATRDAWLAELQQ  145 (312)
T ss_dssp             EBCBSCCCCCSSSCCSCCCSEEEEE--------------------------------------SCB-CSSSSSHHHHHHT
T ss_pred             CcccchhHHHHHHhcCCCccEEEcc--------------------------------------CCC-CcchhHHHHHHHH
Confidence            75333455443  445555555555                                      332 11110000 0000


Q ss_pred             CCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754          172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (526)
Q Consensus       172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  251 (526)
                      ..+++|++|++++|. ++.+++. .++.+++|++|++++|.....++....      .....+++|+.|+++++ .++.+
T Consensus       146 ~~~~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~------~~~~~l~~L~~L~L~~N-~l~~~  216 (312)
T 1wwl_A          146 WLKPGLKVLSIAQAH-SLNFSCE-QVRVFPALSTLDLSDNPELGERGLISA------LCPLKFPTLQVLALRNA-GMETP  216 (312)
T ss_dssp             TCCTTCCEEEEESCS-CCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHH------SCTTSCTTCCEEECTTS-CCCCH
T ss_pred             hhcCCCcEEEeeCCC-CccchHH-HhccCCCCCEEECCCCCcCcchHHHHH------HHhccCCCCCEEECCCC-cCcch
Confidence            112667777776663 3444322 266777777777777753333211000      02256777888888776 34422


Q ss_pred             ccCC-CccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCC
Q 009754          252 CNFT-GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH  330 (526)
Q Consensus       252 ~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  330 (526)
                      +... ..+..+++|++|+++++ ++++.++..                               ....+++|+.|+++++ 
T Consensus       217 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------------------------------~~~~l~~L~~L~Ls~N-  263 (312)
T 1wwl_A          217 SGVCSALAAARVQLQGLDLSHN-SLRDAAGAP-------------------------------SCDWPSQLNSLNLSFT-  263 (312)
T ss_dssp             HHHHHHHHHTTCCCSEEECTTS-CCCSSCCCS-------------------------------CCCCCTTCCEEECTTS-
T ss_pred             HHHHHHHHhcCCCCCEEECCCC-cCCcccchh-------------------------------hhhhcCCCCEEECCCC-
Confidence            2110 11235678888888874 455433110                               0123478888888875 


Q ss_pred             CceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccc
Q 009754          331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC  381 (526)
Q Consensus       331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  381 (526)
                      .++.++...    .  ++|+.|+++++ .++.+|. +..+++|++|++++.
T Consensus       264 ~l~~ip~~~----~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          264 GLKQVPKGL----P--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCSSCCSSC----C--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred             ccChhhhhc----c--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence            455665433    2  78888888886 4677765 778888888988884

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.50  E-value=8.5e-14  Score=134.86  Aligned_cols=199  Identities=17%  Similarity=0.230  Sum_probs=141.1

Q ss_pred             ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc
Q 009754           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (526)
Q Consensus        20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~   99 (526)
                      ..+...+++|++|++++| .+..++ .+..        +++|++|+++++ .++++..   ...+++|++|++++|. ++
T Consensus        34 ~~~~~~l~~L~~L~l~~~-~i~~l~-~~~~--------l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~   98 (308)
T 1h6u_A           34 TVTQADLDGITTLSAFGT-GVTTIE-GVQY--------LNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LK   98 (308)
T ss_dssp             EECHHHHHTCCEEECTTS-CCCCCT-TGGG--------CTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CS
T ss_pred             eecHHHcCCcCEEEeeCC-CccCch-hhhc--------cCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CC
Confidence            345566888999999886 677776 3444        788889988875 4555444   3468889999999885 66


Q ss_pred             ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccE
Q 009754          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (526)
Q Consensus       100 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~  179 (526)
                      .++ .+..+++|++|+++++               .+..++ .+..+++|+.|+++++. ++.+..     ...+++|++
T Consensus        99 ~~~-~~~~l~~L~~L~l~~n---------------~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~  155 (308)
T 1h6u_A           99 NVS-AIAGLQSIKTLDLTST---------------QITDVT-PLAGLSNLQVLYLDLNQ-ITNISP-----LAGLTNLQY  155 (308)
T ss_dssp             CCG-GGTTCTTCCEEECTTS---------------CCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCCE
T ss_pred             Cch-hhcCCCCCCEEECCCC---------------CCCCch-hhcCCCCCCEEECCCCc-cCcCcc-----ccCCCCccE
Confidence            654 5667888889888832               223333 26678899999998876 433221     145789999


Q ss_pred             EEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccc
Q 009754          180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNII  259 (526)
Q Consensus       180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  259 (526)
                      |++++| .++.+++   +..+++|++|++++| .++.++.           +..+++|+.|+++++ .+.+++.    +.
T Consensus       156 L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~-----------l~~l~~L~~L~L~~N-~l~~~~~----l~  214 (308)
T 1h6u_A          156 LSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDISP-----------LASLPNLIEVHLKNN-QISDVSP----LA  214 (308)
T ss_dssp             EECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-----------GGGCTTCCEEECTTS-CCCBCGG----GT
T ss_pred             EEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcChh-----------hcCCCCCCEEEccCC-ccCcccc----cc
Confidence            999988 4555533   788999999999988 5555543           346889999999986 4555542    66


Q ss_pred             cCCCcceEeeecCCCCccc
Q 009754          260 ELPELQHLTIQNCPDMETF  278 (526)
Q Consensus       260 ~~~~L~~L~l~~c~~l~~~  278 (526)
                      .+++|+.|+++++ .++..
T Consensus       215 ~l~~L~~L~l~~N-~i~~~  232 (308)
T 1h6u_A          215 NTSNLFIVTLTNQ-TITNQ  232 (308)
T ss_dssp             TCTTCCEEEEEEE-EEECC
T ss_pred             CCCCCCEEEccCC-eeecC
Confidence            8899999999985 44443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.48  E-value=1.4e-13  Score=133.27  Aligned_cols=192  Identities=17%  Similarity=0.240  Sum_probs=147.6

Q ss_pred             ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754            3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (526)
                      |++|+.|+++++... .++.+..+++|++|++++| .+..++. +..        +++|++|+++++. +++...   ..
T Consensus        40 l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n-~i~~~~~-~~~--------l~~L~~L~L~~n~-l~~~~~---~~  104 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN-QITDLAP-LKN--------LTKITELELSGNP-LKNVSA---IA  104 (308)
T ss_dssp             HHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CCSCCEEECCSCC-CSCCGG---GT
T ss_pred             cCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCC-cCCCChh-Hcc--------CCCCCEEEccCCc-CCCchh---hc
Confidence            678999999987544 4678999999999999997 7888876 655        8999999999865 655532   45


Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+++|+.|++++|. ++.++. +..+++|++|+++++               .+..++. +..+++|+.|+++++. ++.
T Consensus       105 ~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n---------------~l~~~~~-l~~l~~L~~L~l~~n~-l~~  165 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN---------------QITNISP-LAGLTNLQYLSIGNAQ-VSD  165 (308)
T ss_dssp             TCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS---------------CCCCCGG-GGGCTTCCEEECCSSC-CCC
T ss_pred             CCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC---------------ccCcCcc-ccCCCCccEEEccCCc-CCC
Confidence            69999999999994 666654 677999999999842               2233332 6678999999999986 443


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      +.. .    ..+++|++|++++| .++.+++   +..+++|++|++++| .+..++.           +..+++|+.|++
T Consensus       166 ~~~-l----~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~~-----------l~~l~~L~~L~l  224 (308)
T 1h6u_A          166 LTP-L----ANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVSP-----------LANTSNLFIVTL  224 (308)
T ss_dssp             CGG-G----TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCGG-----------GTTCTTCCEEEE
T ss_pred             Chh-h----cCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCcccc-----------ccCCCCCCEEEc
Confidence            322 2    56899999999998 4566544   789999999999998 5555542           356899999999


Q ss_pred             CCCccccc
Q 009754          243 IDLPKLKR  250 (526)
Q Consensus       243 ~~~~~l~~  250 (526)
                      ++++ ++.
T Consensus       225 ~~N~-i~~  231 (308)
T 1h6u_A          225 TNQT-ITN  231 (308)
T ss_dssp             EEEE-EEC
T ss_pred             cCCe-eec
Confidence            9864 343

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.46  E-value=1.9e-14  Score=139.85  Aligned_cols=204  Identities=21%  Similarity=0.185  Sum_probs=120.3

Q ss_pred             CCCCCcEEEeecCCCCc-eeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcC-----CCCCeeeeccccccchhc
Q 009754          145 GFRDMEYLQLSYFPHLK-EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL-----NNLQWLEVRNCDSIEEVL  218 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~~~  218 (526)
                      .+++|++|+++++. ++ ..+... + ...+++|++|+++++. ++.. |.. +..+     ++|++|++++| .+..++
T Consensus        93 ~l~~L~~L~L~~n~-l~~~~~~~~-~-~~~l~~L~~L~Ls~N~-l~~~-~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~~  165 (312)
T 1wwl_A           93 GISGLQELTLENLE-VTGTAPPPL-L-EATGPDLNILNLRNVS-WATR-DAW-LAELQQWLKPGLKVLSIAQA-HSLNFS  165 (312)
T ss_dssp             TTSCCCEEEEEEEB-CBSCCCCCS-S-SCCSCCCSEEEEESCB-CSSS-SSH-HHHHHTTCCTTCCEEEEESC-SCCCCC
T ss_pred             CcCCccEEEccCCc-ccchhHHHH-H-HhcCCCccEEEccCCC-Ccch-hHH-HHHHHHhhcCCCcEEEeeCC-CCccch
Confidence            67899999999876 32 222111 1 1457889999999884 5555 322 5555     88999999888 444443


Q ss_pred             -cccccccccCCCCCCCCccceEecCCCcccccc--ccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCcc
Q 009754          219 -HLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF--CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK  295 (526)
Q Consensus       219 -~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~  295 (526)
                       .          .++.+++|+.|+++++......  +.... +..+++|++|++++| +++..+..              
T Consensus       166 ~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~--------------  219 (312)
T 1wwl_A          166 CE----------QVRVFPALSTLDLSDNPELGERGLISALC-PLKFPTLQVLALRNA-GMETPSGV--------------  219 (312)
T ss_dssp             TT----------TCCCCSSCCEEECCSCTTCHHHHHHHHSC-TTSCTTCCEEECTTS-CCCCHHHH--------------
T ss_pred             HH----------HhccCCCCCEEECCCCCcCcchHHHHHHH-hccCCCCCEEECCCC-cCcchHHH--------------
Confidence             2          4567888888888887533321  11111 257788888888875 44422100              


Q ss_pred             ccchhhhhhccccccccccCCCCCCccEEEecCCCCceEec-ccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCC
Q 009754          296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW-KENDESNKAFANLESLEISECSKLQKLVPPSWHLENLE  374 (526)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~  374 (526)
                         ...+            ...+++|+.|+++++. ++... ...+   ..+++|+.|++++|. ++.+|..+.  ++|+
T Consensus       220 ---~~~~------------~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~  277 (312)
T 1wwl_A          220 ---CSAL------------AAARVQLQGLDLSHNS-LRDAAGAPSC---DWPSQLNSLNLSFTG-LKQVPKGLP--AKLS  277 (312)
T ss_dssp             ---HHHH------------HHTTCCCSEEECTTSC-CCSSCCCSCC---CCCTTCCEEECTTSC-CSSCCSSCC--SEEE
T ss_pred             ---HHHH------------HhcCCCCCEEECCCCc-CCcccchhhh---hhcCCCCEEECCCCc-cChhhhhcc--CCce
Confidence               0000            0134677777777743 43322 1211   445677777777763 556666555  6777


Q ss_pred             EEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          375 ALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       375 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      +|+++++ .++.+|.   ...+++|++|+++++
T Consensus       278 ~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          278 VLDLSYN-RLDRNPS---PDELPQVGNLSLKGN  306 (312)
T ss_dssp             EEECCSS-CCCSCCC---TTTSCEEEEEECTTC
T ss_pred             EEECCCC-CCCCChh---HhhCCCCCEEeccCC
Confidence            7777774 5555543   355666777766654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=1.5e-12  Score=124.77  Aligned_cols=198  Identities=16%  Similarity=0.088  Sum_probs=130.4

Q ss_pred             CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (526)
                      .+++++++++++.. ++.++.      ...+++++|+++++. ++.+ +...+..+++|++|++++| .++.++.     
T Consensus         8 ~l~~l~~l~~~~~~-l~~ip~------~~~~~l~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-----   72 (290)
T 1p9a_G            8 KVASHLEVNCDKRN-LTALPP------DLPKDTTILHLSENL-LYTF-SLATLMPYTRLTQLNLDRA-ELTKLQV-----   72 (290)
T ss_dssp             CSTTCCEEECTTSC-CSSCCS------CCCTTCCEEECTTSC-CSEE-EGGGGTTCTTCCEEECTTS-CCCEEEC-----
T ss_pred             ccCCccEEECCCCC-CCcCCC------CCCCCCCEEEcCCCc-CCcc-CHHHhhcCCCCCEEECCCC-ccCcccC-----
Confidence            56777777777654 443332      224678888888874 4444 2333778888888888887 4555542     


Q ss_pred             cccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhh
Q 009754          225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL  304 (526)
Q Consensus       225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~  304 (526)
                            .+.+++|+.|+++++ .++.++..   +..+++|++|+++++ +++.+++..+                     
T Consensus        73 ------~~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~l~~N-~l~~l~~~~~---------------------  120 (290)
T 1p9a_G           73 ------DGTLPVLGTLDLSHN-QLQSLPLL---GQTLPALTVLDVSFN-RLTSLPLGAL---------------------  120 (290)
T ss_dssp             ------CSCCTTCCEEECCSS-CCSSCCCC---TTTCTTCCEEECCSS-CCCCCCSSTT---------------------
T ss_pred             ------CCCCCcCCEEECCCC-cCCcCchh---hccCCCCCEEECCCC-cCcccCHHHH---------------------
Confidence                  246788888888875 45655543   557888888888884 5665544332                     


Q ss_pred             ccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccC
Q 009754          305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHG  383 (526)
Q Consensus       305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~  383 (526)
                                 ..+++|+.|+++++ .++.++...+   ..+++|+.|+++++ .++.+|.. +..+++|++|+++++ .
T Consensus       121 -----------~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~  183 (290)
T 1p9a_G          121 -----------RGLGELQELYLKGN-ELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-S  183 (290)
T ss_dssp             -----------TTCTTCCEEECTTS-CCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             -----------cCCCCCCEEECCCC-CCCccChhhc---ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-c
Confidence                       23478888888774 4566655443   56778888888776 46666654 356788888888874 5


Q ss_pred             ccccccchhhhhccCCceEEEeccc
Q 009754          384 LINLLTFSTSESLVNLGRMMIADCK  408 (526)
Q Consensus       384 l~~l~~~~~~~~l~~L~~L~i~~c~  408 (526)
                      ++.+|..  +...++|+.+++.+++
T Consensus       184 l~~ip~~--~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          184 LYTIPKG--FFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCCCTT--TTTTCCCSEEECCSCC
T ss_pred             CCccChh--hcccccCCeEEeCCCC
Confidence            6666653  3455678888877654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.45  E-value=2.6e-12  Score=121.97  Aligned_cols=199  Identities=18%  Similarity=0.163  Sum_probs=117.9

Q ss_pred             CCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccccccccc
Q 009754          148 DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADK  227 (526)
Q Consensus       148 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  227 (526)
                      +.+.+++++.. ++.++..      ..+++++|+++++. ++.+++ ..+..+++|++|++++| .++.++..       
T Consensus        17 ~~~~l~~~~~~-l~~ip~~------~~~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~i~~~-------   79 (270)
T 2o6q_A           17 NKNSVDCSSKK-LTAIPSN------IPADTKKLDLQSNK-LSSLPS-KAFHRLTKLRLLYLNDN-KLQTLPAG-------   79 (270)
T ss_dssp             TTTEEECTTSC-CSSCCSC------CCTTCSEEECCSSC-CSCCCT-TSSSSCTTCCEEECCSS-CCSCCCTT-------
T ss_pred             CCCEEEccCCC-CCccCCC------CCCCCCEEECcCCC-CCeeCH-HHhcCCCCCCEEECCCC-ccCeeChh-------
Confidence            35566665543 3332222      23567777777763 444432 23667777888888776 44444320       


Q ss_pred             CCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccc
Q 009754          228 EHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ  307 (526)
Q Consensus       228 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~  307 (526)
                        .+..+++|+.|+++++ .+..++.  ..+..+++|++|+++++ +++..++..+                        
T Consensus        80 --~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~------------------------  129 (270)
T 2o6q_A           80 --IFKELKNLETLWVTDN-KLQALPI--GVFDQLVNLAELRLDRN-QLKSLPPRVF------------------------  129 (270)
T ss_dssp             --TTSSCTTCCEEECCSS-CCCCCCT--TTTTTCSSCCEEECCSS-CCCCCCTTTT------------------------
T ss_pred             --hhcCCCCCCEEECCCC-cCCcCCH--hHcccccCCCEEECCCC-ccCeeCHHHh------------------------
Confidence              2355777777777775 3444432  11456777777777773 4544433222                        


Q ss_pred             cccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccc
Q 009754          308 VQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLIN  386 (526)
Q Consensus       308 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~  386 (526)
                              ..+++|+.|+++++ .++.++...+   ..+++|+.|+++++ .++.++. .+..+++|++|+++++ .++.
T Consensus       130 --------~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~  195 (270)
T 2o6q_A          130 --------DSLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKR  195 (270)
T ss_dssp             --------TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred             --------CcCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCc
Confidence                    23477777777774 4555554433   56677888888776 3555544 3566777888888775 5666


Q ss_pred             cccchhhhhccCCceEEEeccc
Q 009754          387 LLTFSTSESLVNLGRMMIADCK  408 (526)
Q Consensus       387 l~~~~~~~~l~~L~~L~i~~c~  408 (526)
                      ++.. .+..+++|+.|++++++
T Consensus       196 ~~~~-~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          196 VPEG-AFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCTT-TTTTCTTCCEEECCSSC
T ss_pred             CCHH-HhccccCCCEEEecCCC
Confidence            6553 23567777777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.43  E-value=1.9e-12  Score=124.11  Aligned_cols=201  Identities=15%  Similarity=0.167  Sum_probs=126.8

Q ss_pred             cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc
Q 009754           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (526)
Q Consensus        23 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  102 (526)
                      ++.+++++.++++++ .+..+|..+          .++++.|+++++. ++...... ...+++|+.|+++++ .++.++
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~   71 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTALPPDL----------PKDTTILHLSENL-LYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQ   71 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSCCSCC----------CTTCCEEECTTSC-CSEEEGGG-GTTCTTCCEEECTTS-CCCEEE
T ss_pred             ccccCCccEEECCCC-CCCcCCCCC----------CCCCCEEEcCCCc-CCccCHHH-hhcCCCCCEEECCCC-ccCccc
Confidence            455666777777663 566666543          2466666666543 34333322 234677777777766 355554


Q ss_pred             cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (526)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l  182 (526)
                      .. ..+++|++|+++               .+.+..++..+..+++|+.|+++++. ++.+....   ...+++|++|++
T Consensus        72 ~~-~~l~~L~~L~Ls---------------~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~---~~~l~~L~~L~L  131 (290)
T 1p9a_G           72 VD-GTLPVLGTLDLS---------------HNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGA---LRGLGELQELYL  131 (290)
T ss_dssp             CC-SCCTTCCEEECC---------------SSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSST---TTTCTTCCEEEC
T ss_pred             CC-CCCCcCCEEECC---------------CCcCCcCchhhccCCCCCEEECCCCc-CcccCHHH---HcCCCCCCEEEC
Confidence            43 456677777776               23334455555567788888887765 44332111   145788888888


Q ss_pred             ecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCC
Q 009754          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP  262 (526)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  262 (526)
                      ++| .++.+ +...+..+++|++|++++| .++.++..         .+..+++|+.|+++++ .++.++..   +...+
T Consensus       132 ~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~---------~~~~l~~L~~L~L~~N-~l~~ip~~---~~~~~  195 (290)
T 1p9a_G          132 KGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPAG---------LLNGLENLDTLLLQEN-SLYTIPKG---FFGSH  195 (290)
T ss_dssp             TTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCTT---------TTTTCTTCCEEECCSS-CCCCCCTT---TTTTC
T ss_pred             CCC-CCCcc-ChhhcccccCCCEEECCCC-cCCccCHH---------HhcCcCCCCEEECCCC-cCCccChh---hcccc
Confidence            887 45555 4444778889999999887 56665531         3456888999999885 46666554   55777


Q ss_pred             CcceEeeecCC
Q 009754          263 ELQHLTIQNCP  273 (526)
Q Consensus       263 ~L~~L~l~~c~  273 (526)
                      +|+.+++++++
T Consensus       196 ~L~~l~L~~Np  206 (290)
T 1p9a_G          196 LLPFAFLHGNP  206 (290)
T ss_dssp             CCSEEECCSCC
T ss_pred             cCCeEEeCCCC
Confidence            89999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.42  E-value=1.9e-12  Score=123.07  Aligned_cols=175  Identities=19%  Similarity=0.232  Sum_probs=89.3

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      +++|++|.+.++. ++.+..   +..+++|++|++++| .+..++           .+..+++|+.|+++++ .++.++.
T Consensus        40 l~~L~~L~l~~~~-i~~~~~---l~~l~~L~~L~l~~n-~l~~~~-----------~l~~l~~L~~L~L~~n-~l~~~~~  102 (272)
T 3rfs_A           40 LNSIDQIIANNSD-IKSVQG---IQYLPNVRYLALGGN-KLHDIS-----------ALKELTNLTYLILTGN-QLQSLPN  102 (272)
T ss_dssp             HTTCCEEECTTSC-CCCCTT---GGGCTTCCEEECTTS-CCCCCG-----------GGTTCTTCCEEECTTS-CCCCCCT
T ss_pred             ccceeeeeeCCCC-cccccc---cccCCCCcEEECCCC-CCCCch-----------hhcCCCCCCEEECCCC-ccCccCh
Confidence            4566666666552 333322   556666666666665 233332           2344566666666664 3343321


Q ss_pred             CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  333 (526)
                      .  .+..+++|++|++++| +++..++..+                                ..+++|+.|+++++ .++
T Consensus       103 ~--~~~~l~~L~~L~L~~n-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~n-~l~  146 (272)
T 3rfs_A          103 G--VFDKLTNLKELVLVEN-QLQSLPDGVF--------------------------------DKLTNLTYLNLAHN-QLQ  146 (272)
T ss_dssp             T--TTTTCTTCCEEECTTS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CCC
T ss_pred             h--HhcCCcCCCEEECCCC-cCCccCHHHh--------------------------------ccCCCCCEEECCCC-ccC
Confidence            1  1345666666666663 3443332211                                23356666666654 344


Q ss_pred             EecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          334 HLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      .++...+   ..+++|+.|++++|. ++.++.. +..+++|++|+++++ .++.++.. ....+++|++|+++++
T Consensus       147 ~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          147 SLPKGVF---DKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCCTTTT---TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred             ccCHHHh---ccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC-cCCccCHH-HHhCCcCCCEEEccCC
Confidence            4443322   455666666666653 4444332 355666666666664 34444442 2345566666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.42  E-value=4.3e-12  Score=120.80  Aligned_cols=180  Identities=18%  Similarity=0.245  Sum_probs=98.9

Q ss_pred             CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  252 (526)
                      .+++|++|++++| .++.+++ ..+..+++|++|++++| .++.++..         .+..+++|+.|+++++. +..++
T Consensus        50 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~  116 (276)
T 2z62_A           50 SFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLALG---------AFSGLSSLQKLVAVETN-LASLE  116 (276)
T ss_dssp             TCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECTT---------TTTTCTTCCEEECTTSC-CCCST
T ss_pred             cccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCC-ccCccChh---------hhcCCccccEEECCCCC-ccccC
Confidence            3566666666665 3333322 22566666666666666 33333210         34456666666666642 33332


Q ss_pred             cCCCccccCCCcceEeeecCCCCcccc-CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCC
Q 009754          253 NFTGNIIELPELQHLTIQNCPDMETFI-SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (526)
Q Consensus       253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  331 (526)
                      ..  .+..+++|++|+++++ +++... +..+                                ..+++|+.|+++++ .
T Consensus       117 ~~--~~~~l~~L~~L~l~~n-~l~~~~l~~~~--------------------------------~~l~~L~~L~Ls~N-~  160 (276)
T 2z62_A          117 NF--PIGHLKTLKELNVAHN-LIQSFKLPEYF--------------------------------SNLTNLEHLDLSSN-K  160 (276)
T ss_dssp             TC--CCTTCTTCCEEECCSS-CCCCCCCCGGG--------------------------------GGCTTCCEEECCSS-C
T ss_pred             ch--hcccCCCCCEEECcCC-ccceecCchhh--------------------------------ccCCCCCEEECCCC-C
Confidence            11  1446666777777663 343321 1111                                23467777777764 3


Q ss_pred             ceEecccCChhhhhhcccc----eeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          332 VQHLWKENDESNKAFANLE----SLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      ++.++...+   ..+++|+    .|+++++ .++.++.......+|++|+++++ .++.++.. .+..+++|+.|+++++
T Consensus       161 l~~~~~~~~---~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          161 IQSIYCTDL---RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CCEECGGGG---HHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTT-TTTTCCSCCEEECCSS
T ss_pred             CCcCCHHHh---hhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHh-HhcccccccEEEccCC
Confidence            555544433   4444555    6777665 35566555555567888888775 46666553 3356777777777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=1.6e-11  Score=116.76  Aligned_cols=135  Identities=21%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             hhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccc
Q 009754          344 KAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEA  422 (526)
Q Consensus       344 ~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  422 (526)
                      ..+++|+.|+++++. +..++. .+..+++|++|+++++ .++.+.....+..+++|++|+++++ .++.+...      
T Consensus        97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~------  167 (276)
T 2z62_A           97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT------  167 (276)
T ss_dssp             TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGG------
T ss_pred             cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHH------
Confidence            444555555555543 333322 3455566666666653 3333221113355566666666665 34443320      


Q ss_pred             cccccccccc----eeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEeeccCCC
Q 009754          423 KDCNVFKELR----YLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       423 ~~~~~~~~L~----~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~~  492 (526)
                       ....+++|+    .|+++++ .++.++.....  ..+|++|+++++ +++.+|.. +..+++|+.++++++++.
T Consensus       168 -~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~--~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          168 -DLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFK--EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             -GGHHHHTCTTCCEEEECCSS-CCCEECTTSSC--SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             -HhhhhhhccccceeeecCCC-cccccCccccC--CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence             011233444    5666664 45666655544  457777777765 46666653 345777888888666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.36  E-value=3.6e-12  Score=121.10  Aligned_cols=153  Identities=18%  Similarity=0.276  Sum_probs=72.1

Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+++|+.|+++++. ++.+ .++..+++|++|+++++               .+..+ ..+..+++|++|+++++. ++.
T Consensus        39 ~l~~L~~L~l~~~~-i~~~-~~l~~l~~L~~L~l~~n---------------~l~~~-~~l~~l~~L~~L~L~~n~-l~~   99 (272)
T 3rfs_A           39 ELNSIDQIIANNSD-IKSV-QGIQYLPNVRYLALGGN---------------KLHDI-SALKELTNLTYLILTGNQ-LQS   99 (272)
T ss_dssp             HHTTCCEEECTTSC-CCCC-TTGGGCTTCCEEECTTS---------------CCCCC-GGGTTCTTCCEEECTTSC-CCC
T ss_pred             cccceeeeeeCCCC-cccc-cccccCCCCcEEECCCC---------------CCCCc-hhhcCCCCCCEEECCCCc-cCc
Confidence            46666777766663 4433 23444555666666521               11111 133455666666666553 222


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      +....   ...+++|++|++++|. ++.+ +...+..+++|++|++++| .++.++..         .+..+++|+.|++
T Consensus       100 ~~~~~---~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~l  164 (272)
T 3rfs_A          100 LPNGV---FDKLTNLKELVLVENQ-LQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPKG---------VFDKLTNLTELDL  164 (272)
T ss_dssp             CCTTT---TTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT---------TTTTCTTCCEEEC
T ss_pred             cChhH---hcCCcCCCEEECCCCc-CCcc-CHHHhccCCCCCEEECCCC-ccCccCHH---------HhccCccCCEEEC
Confidence            21110   1235566666666653 3333 2222455666666666665 34333210         2344556666666


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecC
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNC  272 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  272 (526)
                      +++ .++.++..  .+..+++|++|++++|
T Consensus       165 ~~n-~l~~~~~~--~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          165 SYN-QLQSLPEG--VFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CSS-CCCCCCTT--TTTTCTTCCEEECCSS
T ss_pred             CCC-CcCccCHH--HhcCCccCCEEECCCC
Confidence            654 23333221  1335555666666553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.35  E-value=1.4e-11  Score=116.89  Aligned_cols=157  Identities=18%  Similarity=0.216  Sum_probs=95.1

Q ss_pred             CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  252 (526)
                      .+++|++|+++++ .++.+ +...+..+++|++|++++| .++.++..         .+..+++|+.|+++++ .++.++
T Consensus        59 ~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n-~l~~~~~~---------~~~~l~~L~~L~l~~n-~l~~~~  125 (270)
T 2o6q_A           59 RLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDN-KLQALPIG---------VFDQLVNLAELRLDRN-QLKSLP  125 (270)
T ss_dssp             SCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSS-CCCCCCTT---------TTTTCSSCCEEECCSS-CCCCCC
T ss_pred             CCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCC-cCCcCCHh---------HcccccCCCEEECCCC-ccCeeC
Confidence            4566666666665 34444 3333566777777777766 34444320         3345677777777764 344442


Q ss_pred             cCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754          253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV  332 (526)
Q Consensus       253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  332 (526)
                      .  ..+..+++|++|+++++ +++..++..+                                ..+++|+.|+++++ .+
T Consensus       126 ~--~~~~~l~~L~~L~Ls~n-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~n-~l  169 (270)
T 2o6q_A          126 P--RVFDSLTKLTYLSLGYN-ELQSLPKGVF--------------------------------DKLTSLKELRLYNN-QL  169 (270)
T ss_dssp             T--TTTTTCTTCCEEECCSS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CC
T ss_pred             H--HHhCcCcCCCEEECCCC-cCCccCHhHc--------------------------------cCCcccceeEecCC-cC
Confidence            2  11456777777777774 4554433222                                23477888888774 45


Q ss_pred             eEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeecccc
Q 009754          333 QHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCH  382 (526)
Q Consensus       333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~  382 (526)
                      +.++...+   ..+++|+.|+++++ .++.++. .+..+++|+.|++++++
T Consensus       170 ~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          170 KRVPEGAF---DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEeChhHh---ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            55554433   56788888888886 4666654 36677888888888754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.26  E-value=3.3e-11  Score=108.43  Aligned_cols=152  Identities=11%  Similarity=0.119  Sum_probs=80.5

Q ss_pred             cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc
Q 009754           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (526)
Q Consensus        23 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  102 (526)
                      .+.+++|++|+++++ .+..+| .+..        +++|++|++.++ .++....   ...+++|+.|++++|..-...+
T Consensus        40 ~~~l~~L~~L~l~~n-~i~~l~-~l~~--------l~~L~~L~l~~n-~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~  105 (197)
T 4ezg_A           40 EAQMNSLTYITLANI-NVTDLT-GIEY--------AHNIKDLTINNI-HATNYNP---ISGLSNLERLRIMGKDVTSDKI  105 (197)
T ss_dssp             HHHHHTCCEEEEESS-CCSCCT-TGGG--------CTTCSEEEEESC-CCSCCGG---GTTCTTCCEEEEECTTCBGGGS
T ss_pred             hhhcCCccEEeccCC-CccChH-HHhc--------CCCCCEEEccCC-CCCcchh---hhcCCCCCEEEeECCccCcccC
Confidence            356677788888775 566666 4444        677777777766 4444321   3356777777777764332344


Q ss_pred             cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (526)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l  182 (526)
                      ..+..+++|++|++++              +......+..+..+++|++|+++++..++++. ..    ..+++|++|++
T Consensus       106 ~~l~~l~~L~~L~Ls~--------------n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l----~~l~~L~~L~l  166 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISH--------------SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL----KTLPELKSLNI  166 (197)
T ss_dssp             CCCTTCTTCCEEECCS--------------SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GG----GGCSSCCEEEC
T ss_pred             hhhcCCCCCCEEEecC--------------CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hh----cCCCCCCEEEC
Confidence            5555566666666662              11111233444455555666555554333322 11    23455555555


Q ss_pred             ecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (526)
                      ++| .++++++   +..+++|++|++++|
T Consensus       167 ~~n-~i~~~~~---l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          167 QFD-GVHDYRG---IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             TTB-CCCCCTT---GGGCSSCCEEEECBC
T ss_pred             CCC-CCcChHH---hccCCCCCEEEeeCc
Confidence            554 2333321   445555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.25  E-value=1.2e-11  Score=118.62  Aligned_cols=150  Identities=14%  Similarity=0.217  Sum_probs=89.1

Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+++|+.|++++| .++.++. +..+++|++|++++               +.+..++ .+..+++|+.|+++++. ++.
T Consensus        66 ~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~---------------n~l~~~~-~l~~l~~L~~L~L~~n~-i~~  126 (291)
T 1h6t_A           66 YLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDE---------------NKVKDLS-SLKDLKKLKSLSLEHNG-ISD  126 (291)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS---------------SCCCCGG-GGTTCTTCCEEECTTSC-CCC
T ss_pred             cCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCC---------------CcCCCCh-hhccCCCCCEEECCCCc-CCC
Confidence            3455555555554 2333333 44455555555552               1122222 24566777777777664 333


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL  242 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  242 (526)
                      +. ..    ..+++|++|++++| .++.+ +  .+..+++|++|++++| .++.++.           ...+++|+.|++
T Consensus       127 ~~-~l----~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~L~~N-~l~~~~~-----------l~~l~~L~~L~L  185 (291)
T 1h6t_A          127 IN-GL----VHLPQLESLYLGNN-KITDI-T--VLSRLTKLDTLSLEDN-QISDIVP-----------LAGLTKLQNLYL  185 (291)
T ss_dssp             CG-GG----GGCTTCCEEECCSS-CCCCC-G--GGGGCTTCSEEECCSS-CCCCCGG-----------GTTCTTCCEEEC
T ss_pred             Ch-hh----cCCCCCCEEEccCC-cCCcc-h--hhccCCCCCEEEccCC-ccccchh-----------hcCCCccCEEEC
Confidence            21 11    35678888888877 34444 2  2778888888888887 4555432           346788888888


Q ss_pred             CCCccccccccCCCccccCCCcceEeeecCCCCccc
Q 009754          243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETF  278 (526)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  278 (526)
                      +++ .+++++.    +..+++|+.|+++++ .+...
T Consensus       186 ~~N-~i~~l~~----l~~l~~L~~L~l~~n-~i~~~  215 (291)
T 1h6t_A          186 SKN-HISDLRA----LAGLKNLDVLELFSQ-ECLNK  215 (291)
T ss_dssp             CSS-CCCBCGG----GTTCTTCSEEEEEEE-EEECC
T ss_pred             CCC-cCCCChh----hccCCCCCEEECcCC-cccCC
Confidence            886 4565532    567888888888884 44443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.25  E-value=1.5e-12  Score=130.34  Aligned_cols=19  Identities=11%  Similarity=0.076  Sum_probs=8.6

Q ss_pred             hhhhhcCCCCCcEEEeecC
Q 009754          139 CYEEMIGFRDMEYLQLSYF  157 (526)
Q Consensus       139 l~~~~~~~~~L~~L~l~~~  157 (526)
                      +...+..+++|+.|+++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n   42 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGN   42 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTS
T ss_pred             HHHHHhcCCCccEEECCCC
Confidence            3333444444555555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=119.27  Aligned_cols=205  Identities=18%  Similarity=0.096  Sum_probs=111.8

Q ss_pred             ccccceeeeccccccccccccCce-ecCCCccEEEecCCCCccccc----cCcccCCCeeeEEecccccccceeeecccc
Q 009754           58 FSKLKVLILDYLPTLTSFCLENYT-LEFPSLERVSMTHCPNMKTFS----HGILSTPKLHKVQVTEKEEGELHHWEGNKL  132 (526)
Q Consensus        58 l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  132 (526)
                      +++|++|++.++. ++...+.... ..+++|+.|+++++..-...+    ..+..+++|++|++++              
T Consensus        90 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~--------------  154 (310)
T 4glp_A           90 YSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ--------------  154 (310)
T ss_dssp             HSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC--------------
T ss_pred             cCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC--------------
Confidence            4567777777653 3322222111 457777777777774322211    1223466777777772              


Q ss_pred             chhhHHhh-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCC--hHHHhcCCCCCeeeec
Q 009754          133 NSTIQKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVR  209 (526)
Q Consensus       133 ~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~  209 (526)
                       +.+..++ ..+..+++|++|+++++.-..............+++|++|++++|. ++.++.  ...++.+++|++|+++
T Consensus       155 -n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls  232 (310)
T 4glp_A          155 -AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLS  232 (310)
T ss_dssp             -CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECT
T ss_pred             -CCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECC
Confidence             2222232 4455677788888877763221100000111346778888888773 443211  1135677888888888


Q ss_pred             cccccchh-ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc----Ccccc
Q 009754          210 NCDSIEEV-LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI----SNSVV  284 (526)
Q Consensus       210 ~~~~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~  284 (526)
                      +|. +... |...+       ....+++|++|+++++ .++.+|..     -+++|++|+++++ +++.++    ...++
T Consensus       233 ~N~-l~~~~p~~~~-------~~~~~~~L~~L~Ls~N-~l~~lp~~-----~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~  297 (310)
T 4glp_A          233 HNS-LRATVNPSAP-------RCMWSSALNSLNLSFA-GLEQVPKG-----LPAKLRVLDLSSN-RLNRAPQPDELPEVD  297 (310)
T ss_dssp             TSC-CCCCCCSCCS-------SCCCCTTCCCEECCSS-CCCSCCSC-----CCSCCSCEECCSC-CCCSCCCTTSCCCCS
T ss_pred             CCC-CCccchhhHH-------hccCcCcCCEEECCCC-CCCchhhh-----hcCCCCEEECCCC-cCCCCchhhhCCCcc
Confidence            774 4433 32110       1222368888888775 45555432     2368888888874 566543    35667


Q ss_pred             eeeecCCCCc
Q 009754          285 HVTTDNKEPQ  294 (526)
Q Consensus       285 ~L~i~~~~~~  294 (526)
                      .++++++.+.
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            7777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.22  E-value=4e-11  Score=114.94  Aligned_cols=174  Identities=18%  Similarity=0.202  Sum_probs=125.0

Q ss_pred             cccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCc
Q 009754           19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM   98 (526)
Q Consensus        19 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l   98 (526)
                      .+.++..+++|+.|++++| .+..++. +..        +++|++|+++++ .++++..   ...+++|+.|+++++. +
T Consensus        38 ~~~~~~~l~~L~~L~l~~~-~i~~~~~-~~~--------l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l  102 (291)
T 1h6t_A           38 DAVTQNELNSIDQIIANNS-DIKSVQG-IQY--------LPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-V  102 (291)
T ss_dssp             SEECHHHHHTCCEEECTTS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-C
T ss_pred             cccchhhcCcccEEEccCC-CcccChh-Hhc--------CCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-C
Confidence            3455667888999999886 6777753 444        788999988875 3455443   3468899999999884 5


Q ss_pred             cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCcc
Q 009754           99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA  178 (526)
Q Consensus        99 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~  178 (526)
                      +.++ .+..+++|++|+++++               .+..+ ..+..+++|+.|+++++. ++.+ ...    ..+++|+
T Consensus       103 ~~~~-~l~~l~~L~~L~L~~n---------------~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l----~~l~~L~  159 (291)
T 1h6t_A          103 KDLS-SLKDLKKLKSLSLEHN---------------GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVL----SRLTKLD  159 (291)
T ss_dssp             CCGG-GGTTCTTCCEEECTTS---------------CCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGG----GGCTTCS
T ss_pred             CCCh-hhccCCCCCEEECCCC---------------cCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhh----ccCCCCC
Confidence            6654 3667888999998842               22222 345678899999999876 4433 122    4678999


Q ss_pred             EEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754          179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                      +|++++| .++.+++   +..+++|++|++++| .++.++           .+..+++|+.|++++++
T Consensus       160 ~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~-----------~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          160 TLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLR-----------ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCG-----------GGTTCTTCSEEEEEEEE
T ss_pred             EEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCCh-----------hhccCCCCCEEECcCCc
Confidence            9999988 4565544   788999999999998 566654           33568999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.22  E-value=2e-11  Score=128.63  Aligned_cols=172  Identities=18%  Similarity=0.211  Sum_probs=96.0

Q ss_pred             ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc
Q 009754           20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK   99 (526)
Q Consensus        20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~   99 (526)
                      +.++..+++|+.|++++| .+..++. +..        +++|+.|+++++ .+++++.   ...+++|+.|++++| .++
T Consensus        36 ~~~~~~L~~L~~L~l~~n-~i~~l~~-l~~--------l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~  100 (605)
T 1m9s_A           36 AVTQNELNSIDQIIANNS-DIKSVQG-IQY--------LPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIK  100 (605)
T ss_dssp             EECHHHHTTCCCCBCTTC-CCCCCTT-GGG--------CTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCC
T ss_pred             ccchhcCCCCCEEECcCC-CCCCChH-Hcc--------CCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCC
Confidence            344556777777777775 4666552 333        667777777664 3444333   335677777777776 344


Q ss_pred             ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccE
Q 009754          100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR  179 (526)
Q Consensus       100 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~  179 (526)
                      .++ .+..+++|+.|+++++               .+..+ ..+..+++|+.|+|+++. ++.+ ...    ..+++|+.
T Consensus       101 ~l~-~l~~l~~L~~L~Ls~N---------------~l~~l-~~l~~l~~L~~L~Ls~N~-l~~l-~~l----~~l~~L~~  157 (605)
T 1m9s_A          101 DLS-SLKDLKKLKSLSLEHN---------------GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVL----SRLTKLDT  157 (605)
T ss_dssp             CCT-TSTTCTTCCEEECTTS---------------CCCCC-GGGGGCTTCSEEECCSSC-CCCC-GGG----GSCTTCSE
T ss_pred             CCh-hhccCCCCCEEEecCC---------------CCCCC-ccccCCCccCEEECCCCc-cCCc-hhh----cccCCCCE
Confidence            443 4555666777776632               11222 234456667777766654 3322 111    34566666


Q ss_pred             EEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754          180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (526)
Q Consensus       180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  245 (526)
                      |++++| .+..+++   +..+++|++|++++| .+..++           .+..+++|+.|+++++
T Consensus       158 L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~-----------~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          158 LSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLR-----------ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             EECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCG-----------GGTTCTTCSEEECCSE
T ss_pred             EECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCCh-----------HHccCCCCCEEEccCC
Confidence            666666 3444333   566666777776666 344433           2344666666666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.21  E-value=2.3e-10  Score=107.07  Aligned_cols=155  Identities=17%  Similarity=0.192  Sum_probs=82.9

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      .+++++|+++++. ++.+.+ ..+..+++|++|++++| .++.++..         .+..+++|+.|+++++ .++.++.
T Consensus        34 ~~~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~  100 (251)
T 3m19_A           34 PADTEKLDLQSTG-LATLSD-ATFRGLTKLTWLNLDYN-QLQTLSAG---------VFDDLTELGTLGLANN-QLASLPL  100 (251)
T ss_dssp             CTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTT---------TTTTCTTCCEEECTTS-CCCCCCT
T ss_pred             CCCCCEEEccCCC-cCccCH-hHhcCcccCCEEECCCC-cCCccCHh---------HhccCCcCCEEECCCC-cccccCh
Confidence            3567777777763 444433 22667777777777776 34443210         3455677777777765 3444421


Q ss_pred             CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  333 (526)
                        ..+..+++|++|+++++ +++.+++..+                                ..+++|+.|+++++ .++
T Consensus       101 --~~~~~l~~L~~L~L~~N-~l~~~~~~~~--------------------------------~~l~~L~~L~Ls~N-~l~  144 (251)
T 3m19_A          101 --GVFDHLTQLDKLYLGGN-QLKSLPSGVF--------------------------------DRLTKLKELRLNTN-QLQ  144 (251)
T ss_dssp             --TTTTTCTTCCEEECCSS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CCC
T ss_pred             --hHhcccCCCCEEEcCCC-cCCCcChhHh--------------------------------ccCCcccEEECcCC-cCC
Confidence              11446667777777663 4444332221                                12356666666653 344


Q ss_pred             EecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccc
Q 009754          334 HLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKC  381 (526)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c  381 (526)
                      .++...+   ..+++|+.|+++++. ++.++. .+..+++|++|+++++
T Consensus       145 ~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          145 SIPAGAF---DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred             ccCHHHc---CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence            4444322   455666666666542 344432 3455566666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.19  E-value=5.2e-11  Score=115.32  Aligned_cols=188  Identities=11%  Similarity=0.030  Sum_probs=110.3

Q ss_pred             cCCCccEEEecCCCCccccccCc--ccCCCeeeEEecccccccceeeeccccchhhHHhh-hhhcCCCCCcEEEeecCCC
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGI--LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPH  159 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~  159 (526)
                      .+++|++|++++|..-...|..+  ..+++|++|+++++.-.           .....+. ..+..+++|++|+++++. 
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-----------~~~~~~~~~~~~~~~~L~~L~Ls~n~-  156 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-----------TGRSWLAELQQWLKPGLKVLSIAQAH-  156 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS-----------STTSSHHHHHTTBCSCCCEEEEECCS-
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc-----------chhhhhHHHHhhhccCCCEEEeeCCC-
Confidence            35779999999996555666665  67888999999842110           0000111 233467889999998876 


Q ss_pred             Cceec-cCCCCCcCCCCCccEEEEecCCCccc--CCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCc
Q 009754          160 LKEIW-HGQALPVSFFNNLARLVVDDCTNMSS--AIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPK  236 (526)
Q Consensus       160 l~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~  236 (526)
                      +.... ...    ..+++|++|++++|.....  +++...+..+++|++|++++| .++.++.....      ..+.+++
T Consensus       157 l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~------l~~~l~~  225 (310)
T 4glp_A          157 SPAFSCEQV----RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAA------LAAAGVQ  225 (310)
T ss_dssp             SCCCCTTSC----CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHH------HHHHTCC
T ss_pred             cchhhHHHh----ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHH------HHhcCCC
Confidence            33222 122    3578899999988853321  111111367888999999888 45544321000      1235688


Q ss_pred             cceEecCCCcccccc-ccCCCccccCCCcceEeeecCCCCcccc---CcccceeeecCCCCcc
Q 009754          237 LYGLRLIDLPKLKRF-CNFTGNIIELPELQHLTIQNCPDMETFI---SNSVVHVTTDNKEPQK  295 (526)
Q Consensus       237 L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~  295 (526)
                      |++|+++++. +... |........+++|++|+++++ +++.++   +..++.|+++++.+.+
T Consensus       226 L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          226 PHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred             CCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCCcCCC
Confidence            8999998864 4444 333221223478888888884 566554   2344444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.19  E-value=8.4e-11  Score=105.74  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccc-c
Q 009754          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR-F  251 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~  251 (526)
                      .+++|++|+++++ .+++++.   +..+++|++|++++| .++.++           .+..+++|+.|+++++. ++. .
T Consensus        42 ~l~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~l~~n-~~~~~~-----------~l~~l~~L~~L~l~~n~-l~~~~  104 (197)
T 4ezg_A           42 QMNSLTYITLANI-NVTDLTG---IEYAHNIKDLTINNI-HATNYN-----------PISGLSNLERLRIMGKD-VTSDK  104 (197)
T ss_dssp             HHHTCCEEEEESS-CCSCCTT---GGGCTTCSEEEEESC-CCSCCG-----------GGTTCTTCCEEEEECTT-CBGGG
T ss_pred             hcCCccEEeccCC-CccChHH---HhcCCCCCEEEccCC-CCCcch-----------hhhcCCCCCEEEeECCc-cCccc
Confidence            3556666666665 3344321   566666666666666 333332           22345556666665542 222 1


Q ss_pred             ccCCCccccCCCcceEeeecC
Q 009754          252 CNFTGNIIELPELQHLTIQNC  272 (526)
Q Consensus       252 ~~~~~~~~~~~~L~~L~l~~c  272 (526)
                      +..   +..+++|++|++++|
T Consensus       105 ~~~---l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A          105 IPN---LSGLTSLTLLDISHS  122 (197)
T ss_dssp             SCC---CTTCTTCCEEECCSS
T ss_pred             Chh---hcCCCCCCEEEecCC
Confidence            111   344555555555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.18  E-value=3.3e-10  Score=106.01  Aligned_cols=176  Identities=17%  Similarity=0.153  Sum_probs=119.5

Q ss_pred             CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (526)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  254 (526)
                      .+.++++++++ .++.++. .   -.+.+++|++++| .+..++..         .+..+++|+.|+++++ .+..++. 
T Consensus        14 ~~~~~l~~~~~-~l~~~p~-~---~~~~l~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~-   76 (251)
T 3m19_A           14 EGKKEVDCQGK-SLDSVPS-G---IPADTEKLDLQST-GLATLSDA---------TFRGLTKLTWLNLDYN-QLQTLSA-   76 (251)
T ss_dssp             GGGTEEECTTC-CCSSCCS-C---CCTTCCEEECTTS-CCCCCCTT---------TTTTCTTCCEEECTTS-CCCCCCT-
T ss_pred             CCCeEEecCCC-CccccCC-C---CCCCCCEEEccCC-CcCccCHh---------HhcCcccCCEEECCCC-cCCccCH-
Confidence            45667777765 4555532 1   2368899999888 44444321         4567889999999886 4555422 


Q ss_pred             CCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE
Q 009754          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH  334 (526)
Q Consensus       255 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  334 (526)
                       ..+..+++|++|+++++ +++..++..+                                ..+++|+.|+++++ .++.
T Consensus        77 -~~~~~l~~L~~L~L~~n-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N-~l~~  121 (251)
T 3m19_A           77 -GVFDDLTELGTLGLANN-QLASLPLGVF--------------------------------DHLTQLDKLYLGGN-QLKS  121 (251)
T ss_dssp             -TTTTTCTTCCEEECTTS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CCCC
T ss_pred             -hHhccCCcCCEEECCCC-cccccChhHh--------------------------------cccCCCCEEEcCCC-cCCC
Confidence             22567888999998884 5665543332                                24488899999885 5666


Q ss_pred             ecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754          335 LWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK  408 (526)
Q Consensus       335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  408 (526)
                      ++...+   ..+++|+.|+++++ .++.++. .+..+++|++|+++++ .++.++.. .+..+++|+.|++++++
T Consensus       122 ~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          122 LPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG-AFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCC
T ss_pred             cChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCc
Confidence            665543   66788999999886 5666665 5777888999999885 56666653 34677888888888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.17  E-value=7.7e-12  Score=125.19  Aligned_cols=242  Identities=14%  Similarity=0.082  Sum_probs=130.1

Q ss_pred             cccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccc--cccccccccCc------eecCCCccEEE
Q 009754           21 FQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYL--PTLTSFCLENY------TLEFPSLERVS   91 (526)
Q Consensus        21 ~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~------~~~~~~L~~L~   91 (526)
                      ..+..+++|++|+|++| .+... +..+..    ....+++|++|+++++  ..++...+...      ...+++|++|+
T Consensus        26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~----~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSE----NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHHHHCSCCCEEECTTS-EECHHHHHHHHH----TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHhcCCCccEEECCCC-CCCHHHHHHHHH----HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            34556777888888886 44432 111110    1113777888888765  22322111100      13568888888


Q ss_pred             ecCCCCcc----ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCC---------CCCcEEEeecCC
Q 009754           92 MTHCPNMK----TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGF---------RDMEYLQLSYFP  158 (526)
Q Consensus        92 l~~c~~l~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~L~~L~l~~~~  158 (526)
                      +++|..-.    .++..+..+++|++|+++++.-.          ......+...+..+         ++|++|+++++.
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~----------~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG----------PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH----------HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC----------HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            88774322    24555566778888888742100          00111222333333         788888888776


Q ss_pred             CCceeccCC-CCCcCCCCCccEEEEecCCCccc-----CCChHHHhcCCCCCeeeecccccc----chhccccccccccC
Q 009754          159 HLKEIWHGQ-ALPVSFFNNLARLVVDDCTNMSS-----AIPANLLRCLNNLQWLEVRNCDSI----EEVLHLEEQNADKE  228 (526)
Q Consensus       159 ~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~l~~l~~L~~L~l~~~~~l----~~~~~~~~~~~~~~  228 (526)
                       +++..... .-....+++|++|++++|. ++.     +.+ ..+..+++|++|++++|..-    ..++.         
T Consensus       171 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~-~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~---------  238 (386)
T 2ca6_A          171 -LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAI---------  238 (386)
T ss_dssp             -CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHH-TTGGGCTTCCEEECCSSCCHHHHHHHHHH---------
T ss_pred             -CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHH-HHhhcCCCccEEECcCCCCCcHHHHHHHH---------
Confidence             32110000 0000245678888888773 331     101 02567788888888877421    33332         


Q ss_pred             CCCCCCCccceEecCCCcccccc-----ccCCCcc--ccCCCcceEeeecCCCCcc-----cc------CcccceeeecC
Q 009754          229 HRGPLFPKLYGLRLIDLPKLKRF-----CNFTGNI--IELPELQHLTIQNCPDMET-----FI------SNSVVHVTTDN  290 (526)
Q Consensus       229 ~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~--~~~~~L~~L~l~~c~~l~~-----~~------~~~L~~L~i~~  290 (526)
                       .+..+++|+.|+++++. ++..     +..   +  ..+++|++|++++| .+..     ++      ...|+.|++++
T Consensus       239 -~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~---l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          239 -ALKSWPNLRELGLNDCL-LSARGAAAVVDA---FSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             -HGGGCTTCCEEECTTCC-CCHHHHHHHHHH---HHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             -HHccCCCcCEEECCCCC-CchhhHHHHHHH---HhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence             33456778888888764 3322     111   2  23778888888875 4555     32      36677888887


Q ss_pred             CCCcc
Q 009754          291 KEPQK  295 (526)
Q Consensus       291 ~~~~~  295 (526)
                      +.+..
T Consensus       313 N~l~~  317 (386)
T 2ca6_A          313 NRFSE  317 (386)
T ss_dssp             SBSCT
T ss_pred             CcCCc
Confidence            77664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.15  E-value=1.5e-10  Score=122.03  Aligned_cols=168  Identities=16%  Similarity=0.220  Sum_probs=129.7

Q ss_pred             ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754            3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (526)
                      ++.|+.|+++.+. +..++.++.+++|+.|+|++| .+..++. +..        +++|+.|+++++ .++..+.   ..
T Consensus        42 L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~--------l~~L~~L~Ls~N-~l~~l~~---l~  106 (605)
T 1m9s_A           42 LNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGN-KLTDIKP-LTN--------LKNLGWLFLDEN-KIKDLSS---LK  106 (605)
T ss_dssp             HTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTS-CCCCCGG-GGG--------CTTCCEEECCSS-CCCCCTT---ST
T ss_pred             CCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCC-CCCCChh-hcc--------CCCCCEEECcCC-CCCCChh---hc
Confidence            5788999998665 445778999999999999997 6888775 554        899999999986 4555432   45


Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE  162 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  162 (526)
                      .+++|+.|++++|. +..+ ..+..+++|+.|+++++               .+..+ ..+..+++|+.|+|+++. +..
T Consensus       107 ~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N---------------~l~~l-~~l~~l~~L~~L~Ls~N~-l~~  167 (605)
T 1m9s_A          107 DLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN---------------KITDI-TVLSRLTKLDTLSLEDNQ-ISD  167 (605)
T ss_dssp             TCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSS---------------CCCCC-GGGGSCTTCSEEECCSSC-CCC
T ss_pred             cCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCC---------------ccCCc-hhhcccCCCCEEECcCCc-CCC
Confidence            79999999999995 5655 45677999999999842               23333 456789999999999986 443


Q ss_pred             eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccc
Q 009754          163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS  213 (526)
Q Consensus       163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~  213 (526)
                      +..     ...+++|+.|++++| .++.+ +.  +..+++|+.|++++|..
T Consensus       168 ~~~-----l~~l~~L~~L~Ls~N-~i~~l-~~--l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          168 IVP-----LAGLTKLQNLYLSKN-HISDL-RA--LAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CGG-----GTTCTTCCEEECCSS-CCCBC-GG--GTTCTTCSEEECCSEEE
T ss_pred             chh-----hccCCCCCEEECcCC-CCCCC-hH--HccCCCCCEEEccCCcC
Confidence            221     256899999999998 56665 33  88999999999999843

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.06  E-value=1e-09  Score=114.37  Aligned_cols=192  Identities=16%  Similarity=0.172  Sum_probs=133.7

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL  106 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  106 (526)
                      .+|+.|+++++ .+..+|..+          +++|++|+++++ .++.++     ..+++|+.|++++| .++.+|. +.
T Consensus        59 ~~L~~L~Ls~n-~L~~lp~~l----------~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~-l~  119 (571)
T 3cvr_A           59 NQFSELQLNRL-NLSSLPDNL----------PPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPE-LP  119 (571)
T ss_dssp             TTCSEEECCSS-CCSCCCSCC----------CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-CC
T ss_pred             CCccEEEeCCC-CCCccCHhH----------cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcch-hh
Confidence            38999999996 688888753          468999999875 455555     24799999999998 5677776 43


Q ss_pred             cCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCC
Q 009754          107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT  186 (526)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~  186 (526)
                      .  +|++|++++               +.+..++.   .+++|+.|+++++. ++.      ++ ..+++|++|++++| 
T Consensus       120 ~--~L~~L~Ls~---------------N~l~~lp~---~l~~L~~L~Ls~N~-l~~------lp-~~l~~L~~L~Ls~N-  170 (571)
T 3cvr_A          120 A--SLKHLDVDN---------------NQLTMLPE---LPALLEYINADNNQ-LTM------LP-ELPTSLEVLSVRNN-  170 (571)
T ss_dssp             T--TCCEEECCS---------------SCCSCCCC---CCTTCCEEECCSSC-CSC------CC-CCCTTCCEEECCSS-
T ss_pred             c--CCCEEECCC---------------CcCCCCCC---cCccccEEeCCCCc-cCc------CC-CcCCCcCEEECCCC-
Confidence            3  899999983               33444554   57899999999886 433      23 24689999999998 


Q ss_pred             CcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcce
Q 009754          187 NMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQH  266 (526)
Q Consensus       187 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~  266 (526)
                      .++.++.   +.  ++|++|++++| .++.+|.+.+  .    .....+.|+.|+++++ .++.+|..   +..+++|+.
T Consensus       171 ~L~~lp~---l~--~~L~~L~Ls~N-~L~~lp~~~~--~----L~~~~~~L~~L~Ls~N-~l~~lp~~---l~~l~~L~~  234 (571)
T 3cvr_A          171 QLTFLPE---LP--ESLEALDVSTN-LLESLPAVPV--R----NHHSEETEIFFRCREN-RITHIPEN---ILSLDPTCT  234 (571)
T ss_dssp             CCSCCCC---CC--TTCCEEECCSS-CCSSCCCCC--------------CCEEEECCSS-CCCCCCGG---GGGSCTTEE
T ss_pred             CCCCcch---hh--CCCCEEECcCC-CCCchhhHHH--h----hhcccccceEEecCCC-cceecCHH---HhcCCCCCE
Confidence            4566543   33  89999999998 6767664210  0    0111233399999986 56777654   557999999


Q ss_pred             EeeecCCCCccccCccc
Q 009754          267 LTIQNCPDMETFISNSV  283 (526)
Q Consensus       267 L~l~~c~~l~~~~~~~L  283 (526)
                      |+++++ .++...+..+
T Consensus       235 L~L~~N-~l~~~~p~~l  250 (571)
T 3cvr_A          235 IILEDN-PLSSRIRESL  250 (571)
T ss_dssp             EECCSS-SCCHHHHHHH
T ss_pred             EEeeCC-cCCCcCHHHH
Confidence            999995 5665544433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.02  E-value=6.1e-10  Score=104.93  Aligned_cols=167  Identities=16%  Similarity=0.185  Sum_probs=90.6

Q ss_pred             CcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccC
Q 009754           25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG  104 (526)
Q Consensus        25 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  104 (526)
                      .+.+++.++++++ .+.+++ .+..        +++|++|++.++ .+++++ .  ...+++|+.|++++| .++.++. 
T Consensus        17 ~l~~l~~l~l~~~-~i~~~~-~~~~--------l~~L~~L~l~~n-~i~~l~-~--l~~l~~L~~L~L~~N-~i~~~~~-   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQ-SVTDLV-SQKE--------LSGVQNFNGDNS-NIQSLA-G--MQFFTNLKELHLSHN-QISDLSP-   80 (263)
T ss_dssp             HHHHHHHHHHTCS-CTTSEE-CHHH--------HTTCSEEECTTS-CCCCCT-T--GGGCTTCCEEECCSS-CCCCCGG-
T ss_pred             HHHHHHHHHhcCC-Cccccc-chhh--------cCcCcEEECcCC-Ccccch-H--HhhCCCCCEEECCCC-ccCCChh-
Confidence            3444455555553 444444 2222        555555555543 333332 1  234566666666655 3444443 


Q ss_pred             cccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEec
Q 009754          105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD  184 (526)
Q Consensus       105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~  184 (526)
                      +..+++|++|++++               +.+..++.. .. ++|+.|+++++. ++.+. ..    ..+++|++|++++
T Consensus        81 l~~l~~L~~L~L~~---------------N~l~~l~~~-~~-~~L~~L~L~~N~-l~~~~-~l----~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           81 LKDLTKLEELSVNR---------------NRLKNLNGI-PS-ACLSRLFLDNNE-LRDTD-SL----IHLKNLEILSIRN  137 (263)
T ss_dssp             GTTCSSCCEEECCS---------------SCCSCCTTC-CC-SSCCEEECCSSC-CSBSG-GG----TTCTTCCEEECTT
T ss_pred             hccCCCCCEEECCC---------------CccCCcCcc-cc-CcccEEEccCCc-cCCCh-hh----cCcccccEEECCC
Confidence            44556666666652               122222221 12 667777777664 33321 11    4567788888877


Q ss_pred             CCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754          185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                      | .++.+ +.  +..+++|++|++++| .++.+.           .+..+++|+.|++++++
T Consensus       138 N-~i~~~-~~--l~~l~~L~~L~L~~N-~i~~~~-----------~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          138 N-KLKSI-VM--LGFLSKLEVLDLHGN-EITNTG-----------GLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             S-CCCBC-GG--GGGCTTCCEEECTTS-CCCBCT-----------TSTTCCCCCEEEEEEEE
T ss_pred             C-cCCCC-hH--HccCCCCCEEECCCC-cCcchH-----------HhccCCCCCEEeCCCCc
Confidence            7 35554 22  777888888888877 444442           45567888888887753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.02  E-value=2.8e-11  Score=119.91  Aligned_cols=85  Identities=16%  Similarity=0.038  Sum_probs=42.4

Q ss_pred             CccEEEecCCCCceEecccCCh-hhhhh-cccceeEeccCcCccc-----cCCCCCC-CCCCCEEeeccccCccccccch
Q 009754          320 RLRWLELSGLHKVQHLWKENDE-SNKAF-ANLESLEISECSKLQK-----LVPPSWH-LENLEALEVSKCHGLINLLTFS  391 (526)
Q Consensus       320 ~L~~L~l~~~~~l~~l~~~~~~-~~~~l-~~L~~L~l~~c~~l~~-----l~~~~~~-l~~L~~L~l~~c~~l~~l~~~~  391 (526)
                      +|++|+++++ .++......+. ....+ ++|+.|++++|. +++     ++..+.. .++|++|+++++ .+++.+...
T Consensus       168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~  244 (362)
T 3goz_A          168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLEN  244 (362)
T ss_dssp             TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHH
T ss_pred             cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHH
Confidence            7777777765 33332221111 11223 467777777653 333     3333333 246777777764 444443311


Q ss_pred             ---hhhhccCCceEEEecc
Q 009754          392 ---TSESLVNLGRMMIADC  407 (526)
Q Consensus       392 ---~~~~l~~L~~L~i~~c  407 (526)
                         ....+++|++|++++|
T Consensus       245 l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          245 LKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHhcCCCccEEEeccC
Confidence               2244566677776665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.02  E-value=4.8e-11  Score=118.26  Aligned_cols=61  Identities=13%  Similarity=-0.036  Sum_probs=29.7

Q ss_pred             CCccEEEecCCCCceEecccCCh-hhhh-hcccceeEeccCcCcccc-----CCCCCCCCCCCEEeeccc
Q 009754          319 PRLRWLELSGLHKVQHLWKENDE-SNKA-FANLESLEISECSKLQKL-----VPPSWHLENLEALEVSKC  381 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~-~~~~-l~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c  381 (526)
                      ++|+.|+++++. +++.....++ .... .++|+.|++++|. +++.     ...+..+++|+.|++++|
T Consensus       196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          196 ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            367777776643 3331111011 0122 2467777776653 3322     123355566777777665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.00  E-value=1.6e-09  Score=113.03  Aligned_cols=177  Identities=12%  Similarity=0.066  Sum_probs=128.1

Q ss_pred             ceeEEeeccCceeecccc-cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceec
Q 009754            5 LFYFFNIHTHAHTFAYFQ-VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLE   83 (526)
Q Consensus         5 ~l~~l~~~~~~~~~~~~~-~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   83 (526)
                      +++.++++.+.... ++. +  +++|++|+|+++ .+..+| .  .        +++|++|+++++ .++.++.  .   
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip-~--~--------l~~L~~L~Ls~N-~l~~ip~--l---  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP-E--L--------PASLEYLDACDN-RLSTLPE--L---  118 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC-C--C--------CTTCCEEECCSS-CCSCCCC--C---
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc-c--c--------cCCCCEEEccCC-CCCCcch--h---
Confidence            78899999876544 443 4  589999999996 788888 2  2        789999999986 5555443  1   


Q ss_pred             CCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCcee
Q 009754           84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI  163 (526)
Q Consensus        84 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  163 (526)
                      ..+|+.|++++| .++.+|.   .+++|+.|++++               +.+..++.   .+++|+.|+++++. ++.+
T Consensus       119 ~~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~---------------N~l~~lp~---~l~~L~~L~Ls~N~-L~~l  175 (571)
T 3cvr_A          119 PASLKHLDVDNN-QLTMLPE---LPALLEYINADN---------------NQLTMLPE---LPTSLEVLSVRNNQ-LTFL  175 (571)
T ss_dssp             CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS---------------SCCSCCCC---CCTTCCEEECCSSC-CSCC
T ss_pred             hcCCCEEECCCC-cCCCCCC---cCccccEEeCCC---------------CccCcCCC---cCCCcCEEECCCCC-CCCc
Confidence            229999999998 4677776   578999999983               33344444   46899999999986 4433


Q ss_pred             ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCC-------CeeeeccccccchhccccccccccCCCCCCCCc
Q 009754          164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNL-------QWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPK  236 (526)
Q Consensus       164 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~  236 (526)
                      +. .      .++|++|++++| .++.++.   +..  +|       +.|++++| .++.+|.          .+..+++
T Consensus       176 p~-l------~~~L~~L~Ls~N-~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~----------~l~~l~~  231 (571)
T 3cvr_A          176 PE-L------PESLEALDVSTN-LLESLPA---VPV--RNHHSEETEIFFRCREN-RITHIPE----------NILSLDP  231 (571)
T ss_dssp             CC-C------CTTCCEEECCSS-CCSSCCC---CC----------CCEEEECCSS-CCCCCCG----------GGGGSCT
T ss_pred             ch-h------hCCCCEEECcCC-CCCchhh---HHH--hhhcccccceEEecCCC-cceecCH----------HHhcCCC
Confidence            22 2      289999999998 5666543   222  56       99999998 6777775          3456899


Q ss_pred             cceEecCCCcccc
Q 009754          237 LYGLRLIDLPKLK  249 (526)
Q Consensus       237 L~~L~l~~~~~l~  249 (526)
                      |+.|++++++--.
T Consensus       232 L~~L~L~~N~l~~  244 (571)
T 3cvr_A          232 TCTIILEDNPLSS  244 (571)
T ss_dssp             TEEEECCSSSCCH
T ss_pred             CCEEEeeCCcCCC
Confidence            9999999975433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.99  E-value=1.7e-09  Score=101.79  Aligned_cols=170  Identities=16%  Similarity=0.226  Sum_probs=124.2

Q ss_pred             ccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhH
Q 009754           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ  137 (526)
Q Consensus        58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  137 (526)
                      +.++..+.+.+ ..+++...   ...+++|+.|++++| .++.++ ++..+++|++|++++               +.+.
T Consensus        18 l~~l~~l~l~~-~~i~~~~~---~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~---------------N~i~   76 (263)
T 1xeu_A           18 LANAVKQNLGK-QSVTDLVS---QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSH---------------NQIS   76 (263)
T ss_dssp             HHHHHHHHHTC-SCTTSEEC---HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCS---------------SCCC
T ss_pred             HHHHHHHHhcC-CCcccccc---hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCC---------------CccC
Confidence            55566666664 33444431   346899999999999 577776 677899999999983               3344


Q ss_pred             HhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchh
Q 009754          138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (526)
Q Consensus       138 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (526)
                      .++. +..+++|+.|+++++. ++.+....     . ++|++|++++| .++.+ +.  +..+++|++|++++| .++.+
T Consensus        77 ~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-----~-~~L~~L~L~~N-~l~~~-~~--l~~l~~L~~L~Ls~N-~i~~~  143 (263)
T 1xeu_A           77 DLSP-LKDLTKLEELSVNRNR-LKNLNGIP-----S-ACLSRLFLDNN-ELRDT-DS--LIHLKNLEILSIRNN-KLKSI  143 (263)
T ss_dssp             CCGG-GTTCSSCCEEECCSSC-CSCCTTCC-----C-SSCCEEECCSS-CCSBS-GG--GTTCTTCCEEECTTS-CCCBC
T ss_pred             CChh-hccCCCCCEEECCCCc-cCCcCccc-----c-CcccEEEccCC-ccCCC-hh--hcCcccccEEECCCC-cCCCC
Confidence            4444 7789999999999986 44432222     2 89999999998 56655 32  889999999999998 56665


Q ss_pred             ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccc
Q 009754          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETF  278 (526)
Q Consensus       218 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  278 (526)
                      +           .+..+++|+.|+++++ .+.++   . .+..+++|+.|+++++ .+...
T Consensus       144 ~-----------~l~~l~~L~~L~L~~N-~i~~~---~-~l~~l~~L~~L~l~~N-~~~~~  187 (263)
T 1xeu_A          144 V-----------MLGFLSKLEVLDLHGN-EITNT---G-GLTRLKKVNWIDLTGQ-KCVNE  187 (263)
T ss_dssp             G-----------GGGGCTTCCEEECTTS-CCCBC---T-TSTTCCCCCEEEEEEE-EEECC
T ss_pred             h-----------HHccCCCCCEEECCCC-cCcch---H-HhccCCCCCEEeCCCC-cccCC
Confidence            4           3356899999999996 45555   2 2678999999999985 44443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.98  E-value=1.3e-11  Score=129.14  Aligned_cols=199  Identities=15%  Similarity=0.106  Sum_probs=120.3

Q ss_pred             cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccc------------cccccccCceecCCCccEE
Q 009754           23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPT------------LTSFCLENYTLEFPSLERV   90 (526)
Q Consensus        23 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~------------l~~~~~~~~~~~~~~L~~L   90 (526)
                      +...++|+.|+|+++ .++.+|..+++        +++|+.|++.+...            .....+. ....+++|+.|
T Consensus       345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~--------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L  414 (567)
T 1dce_A          345 SATDEQLFRCELSVE-KSTVLQSELES--------CKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAV  414 (567)
T ss_dssp             CSTTTTSSSCCCCHH-HHHHHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHH
T ss_pred             cccCccceeccCChh-hHHhhHHHHHH--------HHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccC
Confidence            466889999999995 78899988877        77888777654321            1111111 12345566666


Q ss_pred             E-ecCCCCcccccc------Ccc--cCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCc
Q 009754           91 S-MTHCPNMKTFSH------GIL--STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLK  161 (526)
Q Consensus        91 ~-l~~c~~l~~l~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  161 (526)
                      + ++.+ .+..++.      .+.  ....|+.|++++               +.+..++. +..+++|+.|+++++. ++
T Consensus       415 ~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~---------------n~l~~lp~-~~~l~~L~~L~Ls~N~-l~  476 (567)
T 1dce_A          415 DPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAH---------------KDLTVLCH-LEQLLLVTHLDLSHNR-LR  476 (567)
T ss_dssp             CGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTT---------------SCCSSCCC-GGGGTTCCEEECCSSC-CC
T ss_pred             cchhhc-ccchhhhhhhhcccccccCccCceEEEecC---------------CCCCCCcC-ccccccCcEeecCccc-cc
Confidence            5 2221 1111110      000  012467777762               33334444 6667888888888775 44


Q ss_pred             eeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchh--ccccccccccCCCCCCCCccce
Q 009754          162 EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV--LHLEEQNADKEHRGPLFPKLYG  239 (526)
Q Consensus       162 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~~l~~L~~  239 (526)
                      .++...    ..+++|++|++++| .++.+ |.  ++.+++|++|++++| .++.+  |.          .++.+++|+.
T Consensus       477 ~lp~~~----~~l~~L~~L~Ls~N-~l~~l-p~--l~~l~~L~~L~Ls~N-~l~~~~~p~----------~l~~l~~L~~  537 (567)
T 1dce_A          477 ALPPAL----AALRCLEVLQASDN-ALENV-DG--VANLPRLQELLLCNN-RLQQSAAIQ----------PLVSCPRLVL  537 (567)
T ss_dssp             CCCGGG----GGCTTCCEEECCSS-CCCCC-GG--GTTCSSCCEEECCSS-CCCSSSTTG----------GGGGCTTCCE
T ss_pred             ccchhh----hcCCCCCEEECCCC-CCCCC-cc--cCCCCCCcEEECCCC-CCCCCCCcH----------HHhcCCCCCE
Confidence            444333    56788888888887 45555 32  788888888888887 55555  43          4567888888


Q ss_pred             EecCCCccccccccCCC-ccccCCCcceEee
Q 009754          240 LRLIDLPKLKRFCNFTG-NIIELPELQHLTI  269 (526)
Q Consensus       240 L~l~~~~~l~~~~~~~~-~~~~~~~L~~L~l  269 (526)
                      |++++++ ++..+.... ....+|+|+.|++
T Consensus       538 L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          538 LNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            8888863 555544322 1334788888753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.97  E-value=2.8e-09  Score=96.58  Aligned_cols=36  Identities=19%  Similarity=0.419  Sum_probs=16.3

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (526)
                      +++|++|+++++ .++.+ +...+..+++|++|++++|
T Consensus        51 l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           51 LTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             CTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             cccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCC
Confidence            445555555544 23333 2222344555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.94  E-value=8e-09  Score=93.51  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=29.0

Q ss_pred             hhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          344 KAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       344 ~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      ..+++|+.|+++++ .++.++.. +..+++|++|+++++ .++.++.. .+..+++|++|+++++
T Consensus        97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSC
T ss_pred             cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHH-HhccCCCccEEEecCC
Confidence            34455555555544 23333332 344555555555553 34444332 2244555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.92  E-value=1e-08  Score=93.70  Aligned_cols=77  Identities=9%  Similarity=0.110  Sum_probs=37.1

Q ss_pred             cEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCc
Q 009754          178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGN  257 (526)
Q Consensus       178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  257 (526)
                      ++++++++ .++.+ |.   .-.+.+++|++++| .++.++...        .+..+++|+.|+++++ .++.++.  +.
T Consensus        14 ~~l~~s~n-~l~~i-P~---~~~~~~~~L~L~~N-~l~~~~~~~--------~~~~l~~L~~L~L~~N-~i~~i~~--~~   76 (220)
T 2v70_A           14 TTVDCSNQ-KLNKI-PE---HIPQYTAELRLNNN-EFTVLEATG--------IFKKLPQLRKINFSNN-KITDIEE--GA   76 (220)
T ss_dssp             TEEECCSS-CCSSC-CS---CCCTTCSEEECCSS-CCCEECCCC--------CGGGCTTCCEEECCSS-CCCEECT--TT
T ss_pred             CEeEeCCC-CcccC-cc---CCCCCCCEEEcCCC-cCCccCchh--------hhccCCCCCEEECCCC-cCCEECH--HH
Confidence            45666555 34444 22   12334566666666 344332100        2345566666666654 2444321  11


Q ss_pred             cccCCCcceEeeec
Q 009754          258 IIELPELQHLTIQN  271 (526)
Q Consensus       258 ~~~~~~L~~L~l~~  271 (526)
                      +..+++|++|++++
T Consensus        77 ~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           77 FEGASGVNEILLTS   90 (220)
T ss_dssp             TTTCTTCCEEECCS
T ss_pred             hCCCCCCCEEECCC
Confidence            44556666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.91  E-value=1.2e-11  Score=129.58  Aligned_cols=186  Identities=17%  Similarity=0.109  Sum_probs=120.6

Q ss_pred             ccccceeeeccccccccccccCceecCCCccEEEecCCC-------------CccccccCcccCCCeeeEE-eccccccc
Q 009754           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCP-------------NMKTFSHGILSTPKLHKVQ-VTEKEEGE  123 (526)
Q Consensus        58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~-------------~l~~l~~~~~~~~~L~~L~-l~~~~~~~  123 (526)
                      .++|+.|++++. .++.++..  .+.+++|+.|+++++.             .....|..+..+++|+.|+ +.. ....
T Consensus       348 ~~~L~~L~Ls~n-~L~~Lp~~--i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~  423 (567)
T 1dce_A          348 DEQLFRCELSVE-KSTVLQSE--LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLD  423 (567)
T ss_dssp             TTTSSSCCCCHH-HHHHHHHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred             CccceeccCChh-hHHhhHHH--HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccc
Confidence            678888888863 45655544  4568888888876553             2333444555677788877 331 0000


Q ss_pred             ceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCC
Q 009754          124 LHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNL  203 (526)
Q Consensus       124 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L  203 (526)
                      .+....- .++.+..++     ...|+.|+++++. ++.++. .    ..+++|++|++++| .++.+ |.. ++.+++|
T Consensus       424 ~L~~l~l-~~n~i~~l~-----~~~L~~L~Ls~n~-l~~lp~-~----~~l~~L~~L~Ls~N-~l~~l-p~~-~~~l~~L  488 (567)
T 1dce_A          424 DLRSKFL-LENSVLKME-----YADVRVLHLAHKD-LTVLCH-L----EQLLLVTHLDLSHN-RLRAL-PPA-LAALRCL  488 (567)
T ss_dssp             HHHHHHH-HHHHHHHHH-----HTTCSEEECTTSC-CSSCCC-G----GGGTTCCEEECCSS-CCCCC-CGG-GGGCTTC
T ss_pred             hhhhhhh-hcccccccC-----ccCceEEEecCCC-CCCCcC-c----cccccCcEeecCcc-ccccc-chh-hhcCCCC
Confidence            0000000 011122222     2468999999875 554432 3    56889999999998 46666 433 8899999


Q ss_pred             CeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc--ccCCCccccCCCcceEeeecCCCCcccc
Q 009754          204 QWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF--CNFTGNIIELPELQHLTIQNCPDMETFI  279 (526)
Q Consensus       204 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~  279 (526)
                      ++|++++| .++.+|           .++.+++|+.|+++++ .++.+  |..   +..+++|+.|+++++ .++..+
T Consensus       489 ~~L~Ls~N-~l~~lp-----------~l~~l~~L~~L~Ls~N-~l~~~~~p~~---l~~l~~L~~L~L~~N-~l~~~~  549 (567)
T 1dce_A          489 EVLQASDN-ALENVD-----------GVANLPRLQELLLCNN-RLQQSAAIQP---LVSCPRLVLLNLQGN-SLCQEE  549 (567)
T ss_dssp             CEEECCSS-CCCCCG-----------GGTTCSSCCEEECCSS-CCCSSSTTGG---GGGCTTCCEEECTTS-GGGGSS
T ss_pred             CEEECCCC-CCCCCc-----------ccCCCCCCcEEECCCC-CCCCCCCcHH---HhcCCCCCEEEecCC-cCCCCc
Confidence            99999998 566665           3356899999999986 55655  333   778999999999995 576665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.91  E-value=1.2e-08  Score=94.01  Aligned_cols=149  Identities=16%  Similarity=0.049  Sum_probs=78.3

Q ss_pred             CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCC
Q 009754          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT  255 (526)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  255 (526)
                      +-+.++.++. .++.+ |.   .-.++|++|++++| .+..++..         .+..+++|+.|+++++. ++.++.. 
T Consensus        20 s~~~v~c~~~-~l~~i-p~---~~~~~L~~L~Ls~n-~i~~~~~~---------~~~~l~~L~~L~L~~N~-l~~i~~~-   82 (229)
T 3e6j_A           20 SGTTVDCRSK-RHASV-PA---GIPTNAQILYLHDN-QITKLEPG---------VFDSLINLKELYLGSNQ-LGALPVG-   82 (229)
T ss_dssp             ETTEEECTTS-CCSSC-CS---CCCTTCSEEECCSS-CCCCCCTT---------TTTTCTTCCEEECCSSC-CCCCCTT-
T ss_pred             eCCEeEccCC-CcCcc-CC---CCCCCCCEEEcCCC-ccCccCHH---------HhhCccCCcEEECCCCC-CCCcChh-
Confidence            3455666554 45555 32   23377888888777 34443210         34566777777777753 4444321 


Q ss_pred             CccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEe
Q 009754          256 GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHL  335 (526)
Q Consensus       256 ~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  335 (526)
                       .+..+++|+.|+++++ +++.+++..+                                ..+++|+.|+++++ .++.+
T Consensus        83 -~~~~l~~L~~L~Ls~N-~l~~l~~~~~--------------------------------~~l~~L~~L~Ls~N-~l~~l  127 (229)
T 3e6j_A           83 -VFDSLTQLTVLDLGTN-QLTVLPSAVF--------------------------------DRLVHLKELFMCCN-KLTEL  127 (229)
T ss_dssp             -TTTTCTTCCEEECCSS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CCCSC
T ss_pred             -hcccCCCcCEEECCCC-cCCccChhHh--------------------------------CcchhhCeEeccCC-ccccc
Confidence             1346677777777763 4544432221                                12356666666553 34444


Q ss_pred             cccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccc
Q 009754          336 WKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKC  381 (526)
Q Consensus       336 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c  381 (526)
                      +...    ..+++|+.|+++++ .++.++. .+..+++|+.|++++.
T Consensus       128 p~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          128 PRGI----ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CTTG----GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             Cccc----ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence            4333    45556666666554 3444442 3445555555555553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.89  E-value=1.7e-08  Score=92.29  Aligned_cols=37  Identities=16%  Similarity=0.269  Sum_probs=16.1

Q ss_pred             CCCCccceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754          232 PLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN  271 (526)
Q Consensus       232 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  271 (526)
                      ..+++|+.|+++++ .+..+.  ...+..+++|++|++++
T Consensus        53 ~~l~~L~~L~Ls~N-~i~~~~--~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           53 SPYKKLRRIDLSNN-QISELA--PDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TTCTTCCEEECCSS-CCCEEC--TTTTTTCSSCCEEECCS
T ss_pred             hCCCCCCEEECCCC-cCCCcC--HHHhhCCcCCCEEECCC
Confidence            34455555555553 223221  11133445555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.88  E-value=9.6e-09  Score=93.91  Aligned_cols=75  Identities=13%  Similarity=0.240  Sum_probs=43.7

Q ss_pred             ceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc-CcccC
Q 009754           30 VNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILST  108 (526)
Q Consensus        30 ~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~  108 (526)
                      +.++++++ .+..+|..+.          ..+++|++++. .++..........+++|+.|+++++. ++.++. .+..+
T Consensus        14 ~~l~~s~n-~l~~iP~~~~----------~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l   80 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPEHIP----------QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGA   80 (220)
T ss_dssp             TEEECCSS-CCSSCCSCCC----------TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred             CEeEeCCC-CcccCccCCC----------CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCC
Confidence            47788774 6777776543          35667777763 35544332223457777777777763 444443 34445


Q ss_pred             CCeeeEEec
Q 009754          109 PKLHKVQVT  117 (526)
Q Consensus       109 ~~L~~L~l~  117 (526)
                      ++|++|+++
T Consensus        81 ~~L~~L~Ls   89 (220)
T 2v70_A           81 SGVNEILLT   89 (220)
T ss_dssp             TTCCEEECC
T ss_pred             CCCCEEECC
Confidence            555555555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=1.3e-08  Score=99.12  Aligned_cols=37  Identities=14%  Similarity=0.115  Sum_probs=23.2

Q ss_pred             cceeEEeeccCceeecccccCC-cCCCceEEeccccccc
Q 009754            4 LLFYFFNIHTHAHTFAYFQVGI-PSSLVNLNVSRCDKIE   41 (526)
Q Consensus         4 ~~l~~l~~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~   41 (526)
                      +.+..|.+++......+..+.. +++|++|||+++ .+.
T Consensus        25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n-~i~   62 (329)
T 3sb4_A           25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA-EIK   62 (329)
T ss_dssp             HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE-EEC
T ss_pred             CceeEEEEeccccHHHHHHHHHhhccCeEEecCcc-eeE
Confidence            4556666665544333444444 788999999885 565

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.83  E-value=2.5e-08  Score=98.53  Aligned_cols=173  Identities=15%  Similarity=0.159  Sum_probs=117.7

Q ss_pred             cEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCC-CCCccceEecCCCccccccccCCC
Q 009754          178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGP-LFPKLYGLRLIDLPKLKRFCNFTG  256 (526)
Q Consensus       178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~  256 (526)
                      +.++++++ .++.+ |.   .-.+.+++|++++| .++.++..         ... .+++|+.|+++++ .+..++.  .
T Consensus        21 ~~l~c~~~-~l~~i-P~---~~~~~l~~L~Ls~N-~l~~l~~~---------~~~~~l~~L~~L~L~~N-~i~~i~~--~   82 (361)
T 2xot_A           21 NILSCSKQ-QLPNV-PQ---SLPSYTALLDLSHN-NLSRLRAE---------WTPTRLTNLHSLLLSHN-HLNFISS--E   82 (361)
T ss_dssp             TEEECCSS-CCSSC-CS---SCCTTCSEEECCSS-CCCEECTT---------SSSSCCTTCCEEECCSS-CCCEECT--T
T ss_pred             CEEEeCCC-CcCcc-Cc---cCCCCCCEEECCCC-CCCccChh---------hhhhcccccCEEECCCC-cCCccCh--h
Confidence            56777765 56665 32   22356899999988 56665431         233 6889999999886 5566532  2


Q ss_pred             ccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEec
Q 009754          257 NIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW  336 (526)
Q Consensus       257 ~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  336 (526)
                      .+..+++|++|+++++ +++.+++..+                                ..+++|+.|+++++ .++.+.
T Consensus        83 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N-~i~~~~  128 (361)
T 2xot_A           83 AFVPVPNLRYLDLSSN-HLHTLDEFLF--------------------------------SDLQALEVLLLYNN-HIVVVD  128 (361)
T ss_dssp             TTTTCTTCCEEECCSS-CCCEECTTTT--------------------------------TTCTTCCEEECCSS-CCCEEC
T ss_pred             hccCCCCCCEEECCCC-cCCcCCHHHh--------------------------------CCCcCCCEEECCCC-cccEEC
Confidence            2668899999999984 5666554332                                24589999999885 466665


Q ss_pred             ccCChhhhhhcccceeEeccCcCccccCCCC----CCCCCCCEEeeccccCccccccchhhhhccC--CceEEEeccc
Q 009754          337 KENDESNKAFANLESLEISECSKLQKLVPPS----WHLENLEALEVSKCHGLINLLTFSTSESLVN--LGRMMIADCK  408 (526)
Q Consensus       337 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~--L~~L~i~~c~  408 (526)
                      ...+   ..+++|+.|+++++ .++.+|...    ..+++|+.|+++++ .++.++... +..+++  ++.|++.+++
T Consensus       129 ~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          129 RNAF---EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTD-LQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             TTTT---TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHH-HHHSCHHHHTTEECCSSC
T ss_pred             HHHh---CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHH-hhhccHhhcceEEecCCC
Confidence            5444   77889999999886 577776544    46789999999984 677776543 355665  4778887754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.83  E-value=2e-08  Score=99.27  Aligned_cols=176  Identities=20%  Similarity=0.115  Sum_probs=119.6

Q ss_pred             cEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHh-cCCCCCeeeeccccccchhccccccccccC
Q 009754          150 EYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLR-CLNNLQWLEVRNCDSIEEVLHLEEQNADKE  228 (526)
Q Consensus       150 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  228 (526)
                      +.+++++.. ++.++.      .....++.|+++++ .++.+++. .+. .+++|++|++++| .++.++..        
T Consensus        21 ~~l~c~~~~-l~~iP~------~~~~~l~~L~Ls~N-~l~~l~~~-~~~~~l~~L~~L~L~~N-~i~~i~~~--------   82 (361)
T 2xot_A           21 NILSCSKQQ-LPNVPQ------SLPSYTALLDLSHN-NLSRLRAE-WTPTRLTNLHSLLLSHN-HLNFISSE--------   82 (361)
T ss_dssp             TEEECCSSC-CSSCCS------SCCTTCSEEECCSS-CCCEECTT-SSSSCCTTCCEEECCSS-CCCEECTT--------
T ss_pred             CEEEeCCCC-cCccCc------cCCCCCCEEECCCC-CCCccChh-hhhhcccccCEEECCCC-cCCccChh--------
Confidence            566666543 444332      23467999999998 56666443 355 8999999999998 56665421        


Q ss_pred             CCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhcccc
Q 009754          229 HRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQV  308 (526)
Q Consensus       229 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~  308 (526)
                       .+..+++|+.|+++++ .++.++.  ..+..+++|+.|+++++ ++....+..+                         
T Consensus        83 -~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~L~~N-~i~~~~~~~~-------------------------  132 (361)
T 2xot_A           83 -AFVPVPNLRYLDLSSN-HLHTLDE--FLFSDLQALEVLLLYNN-HIVVVDRNAF-------------------------  132 (361)
T ss_dssp             -TTTTCTTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCCEECTTTT-------------------------
T ss_pred             -hccCCCCCCEEECCCC-cCCcCCH--HHhCCCcCCCEEECCCC-cccEECHHHh-------------------------
Confidence             4567899999999996 4666633  22668899999999994 6666544433                         


Q ss_pred             ccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCC--CCEEeecccc
Q 009754          309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLEN--LEALEVSKCH  382 (526)
Q Consensus       309 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~--L~~L~l~~c~  382 (526)
                             ..+++|+.|+++++ .++.++...+.....+++|+.|+++++ .++.+|. .+..+++  ++.|++.+++
T Consensus       133 -------~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          133 -------EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             -------TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             -------CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence                   34589999999985 577766554322246899999999986 4666652 3445555  4788888753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.83  E-value=1.7e-08  Score=92.16  Aligned_cols=61  Identities=13%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                      +++|++|+++++ .++.+.+ ..+..+++|++|++++| .++.++..         .+..+++|+.|++++++
T Consensus       103 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          103 LFSLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDN-KLQTIAKG---------TFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTT---------TTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCC-cCCEECHH---------HHhCCCCCCEEEeCCCC
Confidence            455566666555 2333322 22556666666666665 34433310         23445666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.81  E-value=4.4e-09  Score=91.70  Aligned_cols=136  Identities=20%  Similarity=0.263  Sum_probs=84.0

Q ss_pred             CCcCCCceEEeccccccc--EeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccc-
Q 009754           24 GIPSSLVNLNVSRCDKIE--EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT-  100 (526)
Q Consensus        24 ~~l~~L~~L~L~~c~~l~--~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-  100 (526)
                      ...++|++|++++| .+.  .+|..+..        +++|++|++.++. ++..   .....+++|+.|++++|. ++. 
T Consensus        21 ~~~~~L~~L~l~~n-~l~~~~i~~~~~~--------l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~   86 (168)
T 2ell_A           21 RTPAAVRELVLDNC-KSNDGKIEGLTAE--------FVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG   86 (168)
T ss_dssp             SCTTSCSEEECCSC-BCBTTBCSSCCGG--------GGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC
T ss_pred             CCcccCCEEECCCC-CCChhhHHHHHHh--------CCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH
Confidence            44578888888886 465  66665554        7777777777654 5444   123456777777777664 222 


Q ss_pred             cccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceec--cCCCCCcCCCCCcc
Q 009754          101 FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIW--HGQALPVSFFNNLA  178 (526)
Q Consensus       101 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~l~~L~  178 (526)
                      +|.                                      .+..+++|+.|+++++. ++.+.  ...    ..+++|+
T Consensus        87 ~~~--------------------------------------~~~~l~~L~~L~Ls~N~-l~~~~~~~~l----~~l~~L~  123 (168)
T 2ell_A           87 LDM--------------------------------------LAEKLPNLTHLNLSGNK-LKDISTLEPL----KKLECLK  123 (168)
T ss_dssp             CCH--------------------------------------HHHHCTTCCEEECBSSS-CCSSGGGGGG----SSCSCCC
T ss_pred             HHH--------------------------------------HHhhCCCCCEEeccCCc-cCcchhHHHH----hcCCCCC
Confidence            221                                      22235666666666654 33322  111    4578888


Q ss_pred             EEEEecCCCcccCCC--hHHHhcCCCCCeeeeccccccchhc
Q 009754          179 RLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVRNCDSIEEVL  218 (526)
Q Consensus       179 ~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~~~~~l~~~~  218 (526)
                      +|++++|. ++..++  ...+..+++|++|++++| ...+++
T Consensus       124 ~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~  163 (168)
T 2ell_A          124 SLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP  163 (168)
T ss_dssp             EEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred             EEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence            88888874 555533  135888999999999988 455544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.80  E-value=4.4e-08  Score=90.06  Aligned_cols=150  Identities=16%  Similarity=0.093  Sum_probs=103.4

Q ss_pred             ccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCCCCCCCCEEeeccccCccccccchhhhhccCC
Q 009754          321 LRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNL  399 (526)
Q Consensus       321 L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L  399 (526)
                      -+.++.++ ..++.++...      .++|+.|+++++. ++.+ +..+..+++|++|+++++ .+..++.. .+..+++|
T Consensus        21 ~~~v~c~~-~~l~~ip~~~------~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~-~~~~l~~L   90 (229)
T 3e6j_A           21 GTTVDCRS-KRHASVPAGI------PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVG-VFDSLTQL   90 (229)
T ss_dssp             TTEEECTT-SCCSSCCSCC------CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTC
T ss_pred             CCEeEccC-CCcCccCCCC------CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChh-hcccCCCc
Confidence            34566655 3456665432      3788888888864 4444 556778888888888885 56666653 34678888


Q ss_pred             ceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC-CCCCC
Q 009754          400 GRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ-GVLDT  478 (526)
Q Consensus       400 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~  478 (526)
                      ++|+++++ .++.++.   +    ....+++|+.|+++++ .++.+|.....  +++|++|+++++ +++.+|. .+..+
T Consensus        91 ~~L~Ls~N-~l~~l~~---~----~~~~l~~L~~L~Ls~N-~l~~lp~~~~~--l~~L~~L~L~~N-~l~~~~~~~~~~l  158 (229)
T 3e6j_A           91 TVLDLGTN-QLTVLPS---A----VFDRLVHLKELFMCCN-KLTELPRGIER--LTHLTHLALDQN-QLKSIPHGAFDRL  158 (229)
T ss_dssp             CEEECCSS-CCCCCCT---T----TTTTCTTCCEEECCSS-CCCSCCTTGGG--CTTCSEEECCSS-CCCCCCTTTTTTC
T ss_pred             CEEECCCC-cCCccCh---h----HhCcchhhCeEeccCC-cccccCccccc--CCCCCEEECCCC-cCCccCHHHHhCC
Confidence            88888886 5655543   1    1134788888888886 67778776655  889999999874 6777764 35567


Q ss_pred             CCcceEEeeccCCC
Q 009754          479 PMLNKVNVTEEEKD  492 (526)
Q Consensus       479 ~~L~~l~l~~~~~~  492 (526)
                      ++|+.+++.++.+.
T Consensus       159 ~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          159 SSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCCEEECTTSCBC
T ss_pred             CCCCEEEeeCCCcc
Confidence            88999988766654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.75  E-value=6.7e-08  Score=94.15  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=60.8

Q ss_pred             CCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccc-eeecccccccceecCC
Q 009754          370 LENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELR-YLELYCLPSLTSFCLG  448 (526)
Q Consensus       370 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~  448 (526)
                      +++|+.+++.++ .++.++..+ +.++++|+++++.+  +++.+..   +    ....+++|+ .+.+.+  +++.++..
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~a-F~~~~~L~~l~l~~--ni~~I~~---~----aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFT-FAQKKYLLKIKLPH--NLKTIGQ---R----VFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTT-TTTCTTCCEEECCT--TCCEECT---T----TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             cCCCeEEECCCC-CcceecHhh-hhCCCCCCEEECCc--ccceehH---H----HhhCChhccEEEEEcc--cceEEchh
Confidence            567777777763 466666543 35677777777765  2555544   1    112345666 666655  56666655


Q ss_pred             CccCCCCCccEEEEcCCCCceeccC-CCCCCCCcceEE
Q 009754          449 NYALEFPSLKQVVVRQCPKMKIFSQ-GVLDTPMLNKVN  485 (526)
Q Consensus       449 ~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~  485 (526)
                      ... .|++|+++++.+ .+++.++. .+..+++|+.+.
T Consensus       292 aF~-~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          292 AFM-GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTT-TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             hhh-CCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            443 577777777754 46666664 344566777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.72  E-value=2e-08  Score=87.54  Aligned_cols=128  Identities=11%  Similarity=0.029  Sum_probs=88.7

Q ss_pred             ccceeEEeeccCcee--ecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCc
Q 009754            3 FLLFYFFNIHTHAHT--FAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY   80 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~--~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (526)
                      .+.++.|+++.+...  .....+..+++|++|++++| .+..+ ..+..        +++|++|+++++. ++..... .
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~--------l~~L~~L~Ls~N~-l~~~~~~-~   90 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPK--------LPKLKKLELSENR-IFGGLDM-L   90 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCC--------CSSCCEEEEESCC-CCSCCCH-H
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhcc--------CCCCCEEECcCCc-CchHHHH-H
Confidence            578999999988765  33335688999999999997 57777 44554        8999999999865 4442222 1


Q ss_pred             eecCCCccEEEecCCCCccccc--cCcccCCCeeeEEecccccccceeeeccccchhhHHhhh----hhcCCCCCcEEEe
Q 009754           81 TLEFPSLERVSMTHCPNMKTFS--HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE----EMIGFRDMEYLQL  154 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~L~~L~l  154 (526)
                      ...+++|+.|++++| .++.++  ..+..+++|++|++++               +.+..++.    .+..+++|+.|++
T Consensus        91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~---------------N~l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A           91 AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFN---------------CEVTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCS---------------SGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred             HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeC---------------CcCcchHHHHHHHHHhCccCcEecC
Confidence            335999999999999 566654  4556677777777772               23333332    4455666666666


Q ss_pred             ecCC
Q 009754          155 SYFP  158 (526)
Q Consensus       155 ~~~~  158 (526)
                      +++.
T Consensus       155 ~~n~  158 (168)
T 2ell_A          155 YDRE  158 (168)
T ss_dssp             EETT
T ss_pred             CCCC
Confidence            6654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.70  E-value=7.8e-09  Score=88.14  Aligned_cols=129  Identities=18%  Similarity=0.227  Sum_probs=74.3

Q ss_pred             CcCCCceEEeccccccc--EeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc
Q 009754           25 IPSSLVNLNVSRCDKIE--EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (526)
Q Consensus        25 ~l~~L~~L~L~~c~~l~--~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  102 (526)
                      ..++|++|++++| .+.  .+|..+..        +++|++|+++++ .++..   .....+++|+.|++++|. ++.  
T Consensus        15 ~~~~l~~L~l~~n-~l~~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~--   78 (149)
T 2je0_A           15 TPSDVKELVLDNS-RSNEGKLEGLTDE--------FEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR-VSG--   78 (149)
T ss_dssp             CGGGCSEEECTTC-BCBTTBCCSCCTT--------CTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC-CCS--
T ss_pred             CCccCeEEEccCC-cCChhHHHHHHhh--------cCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc-ccc--
Confidence            3567777777776 454  55654444        566666666654 33333   112345555555555553 221  


Q ss_pred             cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceec--cCCCCCcCCCCCccEE
Q 009754          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIW--HGQALPVSFFNNLARL  180 (526)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~l~~L~~L  180 (526)
                                                         .++..+..+++|+.|+++++. ++...  ...    ..+++|++|
T Consensus        79 -----------------------------------~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~----~~l~~L~~L  118 (149)
T 2je0_A           79 -----------------------------------GLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPL----KKLENLKSL  118 (149)
T ss_dssp             -----------------------------------CTHHHHHHCTTCCEEECTTSC-CCSHHHHGGG----GGCTTCCEE
T ss_pred             -----------------------------------hHHHHhhhCCCCCEEECCCCc-CCChHHHHHH----hhCCCCCEE
Confidence                                               022233345667777776665 33321  222    457888888


Q ss_pred             EEecCCCcccCCC--hHHHhcCCCCCeeeecc
Q 009754          181 VVDDCTNMSSAIP--ANLLRCLNNLQWLEVRN  210 (526)
Q Consensus       181 ~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~~  210 (526)
                      ++++| .++..++  ...+..+++|++|++++
T Consensus       119 ~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          119 DLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             eCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            88887 4555544  14588999999998863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.68  E-value=2.1e-08  Score=85.39  Aligned_cols=102  Identities=13%  Similarity=0.036  Sum_probs=76.3

Q ss_pred             ccceeEEeeccCcee--ecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCc
Q 009754            3 FLLFYFFNIHTHAHT--FAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY   80 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~--~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   80 (526)
                      ++.++.++++.+...  .....++.+++|++|++++| .+..+ ..+.+        +++|++|+++++. +++..+. .
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~--------l~~L~~L~Ls~n~-i~~~~~~-~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPK--------LNKLKKLELSDNR-VSGGLEV-L   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCC--------CTTCCEEECCSSC-CCSCTHH-H
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhc--------CCCCCEEECCCCc-ccchHHH-H
Confidence            578999999998766  33446689999999999997 67777 44554        8999999999864 4442222 1


Q ss_pred             eecCCCccEEEecCCCCccccc--cCcccCCCeeeEEec
Q 009754           81 TLEFPSLERVSMTHCPNMKTFS--HGILSTPKLHKVQVT  117 (526)
Q Consensus        81 ~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~  117 (526)
                      ...+++|+.|++++|. ++.++  ..+..+++|++|+++
T Consensus        84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECT
T ss_pred             hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCc
Confidence            3358999999999985 56543  556677888888887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.62  E-value=2.3e-08  Score=87.84  Aligned_cols=136  Identities=12%  Similarity=0.113  Sum_probs=78.6

Q ss_pred             cccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccc
Q 009754           21 FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT  100 (526)
Q Consensus        21 ~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~  100 (526)
                      +.+..+++|++|+++++ .+..+|. +..       ..++|++|+++++ .++++   .....+++|+.|++++|. ++.
T Consensus        13 ~~~~~~~~L~~L~l~~n-~l~~i~~-~~~-------~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~   78 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGY-KIPVIEN-LGA-------TLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICR   78 (176)
T ss_dssp             CEEECTTSCEEEECTTS-CCCSCCC-GGG-------GTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCE
T ss_pred             HhcCCcCCceEEEeeCC-CCchhHH-hhh-------cCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccc
Confidence            44556788888888886 6666643 222       1347777777764 34443   113456677777777663 444


Q ss_pred             cccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceecc--CCCCCcCCCCCcc
Q 009754          101 FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH--GQALPVSFFNNLA  178 (526)
Q Consensus       101 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~l~~L~  178 (526)
                      +|.+.                                     +..+++|+.|+++++. ++.++.  ..    ..+++|+
T Consensus        79 ~~~~~-------------------------------------~~~l~~L~~L~L~~N~-i~~~~~~~~l----~~l~~L~  116 (176)
T 1a9n_A           79 IGEGL-------------------------------------DQALPDLTELILTNNS-LVELGDLDPL----ASLKSLT  116 (176)
T ss_dssp             ECSCH-------------------------------------HHHCTTCCEEECCSCC-CCCGGGGGGG----GGCTTCC
T ss_pred             cCcch-------------------------------------hhcCCCCCEEECCCCc-CCcchhhHhh----hcCCCCC
Confidence            44333                                     1234555555555543 222221  11    3467777


Q ss_pred             EEEEecCCCcccCCCh--HHHhcCCCCCeeeeccccc
Q 009754          179 RLVVDDCTNMSSAIPA--NLLRCLNNLQWLEVRNCDS  213 (526)
Q Consensus       179 ~L~l~~c~~l~~~~~~--~~l~~l~~L~~L~l~~~~~  213 (526)
                      +|++++|. +..++..  ..+..+++|++|+++++..
T Consensus       117 ~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          117 YLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            88877774 3444221  1478899999999988843

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.61  E-value=5.6e-06  Score=82.56  Aligned_cols=191  Identities=14%  Similarity=0.166  Sum_probs=94.3

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCc-
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI-  105 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-  105 (526)
                      ..++.+.+-+  .+..|+.....       . .+|+.+.+.+  +++.+.......  .+|+.+.+.+  .++.+..+. 
T Consensus       113 ~~l~~i~ip~--~i~~I~~~aF~-------~-~~L~~i~l~~--~i~~I~~~aF~~--~~L~~i~lp~--~l~~I~~~aF  176 (401)
T 4fdw_A          113 KGYNEIILPN--SVKSIPKDAFR-------N-SQIAKVVLNE--GLKSIGDMAFFN--STVQEIVFPS--TLEQLKEDIF  176 (401)
T ss_dssp             SSCSEEECCT--TCCEECTTTTT-------T-CCCSEEECCT--TCCEECTTTTTT--CCCCEEECCT--TCCEECSSTT
T ss_pred             CCccEEEECC--ccCEehHhhcc-------c-CCccEEEeCC--CccEECHHhcCC--CCceEEEeCC--CccEehHHHh
Confidence            5555555544  35555442211       1 2466666542  244444333221  3566666654  345544332 


Q ss_pred             ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecC
Q 009754          106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC  185 (526)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c  185 (526)
                      ..+.+|+.+.+.               .+.+..++.....+++|+.+.+...  ++.+.... +  ..+++|+.+.+.. 
T Consensus       177 ~~c~~L~~l~l~---------------~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~a-F--~~~~~L~~l~l~~-  235 (401)
T 4fdw_A          177 YYCYNLKKADLS---------------KTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQA-F--LKTSQLKTIEIPE-  235 (401)
T ss_dssp             TTCTTCCEEECT---------------TSCCSEECTTTTTTCCCSEEECCTT--CCEECTTT-T--TTCTTCCCEECCT-
T ss_pred             hCcccCCeeecC---------------CCcceEechhhEeecccCEEEeCCc--hheehhhH-h--hCCCCCCEEecCC-
Confidence            335667777765               2233334433334567777777532  44333222 1  2456777777765 


Q ss_pred             CCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcc----ccccccCCCccccC
Q 009754          186 TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK----LKRFCNFTGNIIEL  261 (526)
Q Consensus       186 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----l~~~~~~~~~~~~~  261 (526)
                       +++.+ +...+.. .+|+.+.+..  .++.++.-         ....+++|+.+.+.+...    ...+  ....+..|
T Consensus       236 -~l~~I-~~~aF~~-~~L~~i~lp~--~i~~I~~~---------aF~~c~~L~~l~l~~~~~~~~~~~~I--~~~aF~~c  299 (401)
T 4fdw_A          236 -NVSTI-GQEAFRE-SGITTVKLPN--GVTNIASR---------AFYYCPELAEVTTYGSTFNDDPEAMI--HPYCLEGC  299 (401)
T ss_dssp             -TCCEE-CTTTTTT-CCCSEEEEET--TCCEECTT---------TTTTCTTCCEEEEESSCCCCCTTCEE--CTTTTTTC
T ss_pred             -CccCc-ccccccc-CCccEEEeCC--CccEEChh---------HhhCCCCCCEEEeCCccccCCcccEE--CHHHhhCC
Confidence             24444 3333444 5777777743  34444321         445667777777765321    0112  12225566


Q ss_pred             CCcceEeee
Q 009754          262 PELQHLTIQ  270 (526)
Q Consensus       262 ~~L~~L~l~  270 (526)
                      ++|+.+.+.
T Consensus       300 ~~L~~l~l~  308 (401)
T 4fdw_A          300 PKLARFEIP  308 (401)
T ss_dssp             TTCCEECCC
T ss_pred             ccCCeEEeC
Confidence            666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.60  E-value=3.8e-06  Score=83.80  Aligned_cols=55  Identities=13%  Similarity=0.190  Sum_probs=24.5

Q ss_pred             CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeecc
Q 009754          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSK  380 (526)
Q Consensus       318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~  380 (526)
                      +++|+.+.+.+  +++.++...|   ..+++|+.+.+..  .++.+. ..+..+ +|+.+++.+
T Consensus       299 c~~L~~l~l~~--~i~~I~~~aF---~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          299 CPKLARFEIPE--SIRILGQGLL---GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             CTTCCEECCCT--TCCEECTTTT---TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC
T ss_pred             CccCCeEEeCC--ceEEEhhhhh---cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC
Confidence            34555555542  3444444433   4445555555533  233332 223334 555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.55  E-value=5.7e-07  Score=80.09  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=37.5

Q ss_pred             CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecccc
Q 009754          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH  382 (526)
Q Consensus       318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  382 (526)
                      +++|+.|+++++ .++.++...+   ..+++|+.|+++++..-...|..+..+++|++|++++++
T Consensus        77 l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           77 ASHIQELQLGEN-KIKEISNKMF---LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CTTCCEEECCSC-CCCEECSSSS---TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            366667776663 4555554433   566777777777764333335566677777777777753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.55  E-value=1.5e-07  Score=82.61  Aligned_cols=127  Identities=9%  Similarity=0.107  Sum_probs=88.9

Q ss_pred             ccceeEEeeccCceeecccccCCcC-CCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCce
Q 009754            3 FLLFYFFNIHTHAHTFAYFQVGIPS-SLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYT   81 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~~~~~l~-~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   81 (526)
                      +++|+.|+++++... .++.+..+. +|++|+++++ .+..+ ..+..        +++|++|+++++ .++.++... .
T Consensus        18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~--------l~~L~~L~Ls~N-~l~~~~~~~-~   84 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN-EIRKL-DGFPL--------LRRLKTLLVNNN-RICRIGEGL-D   84 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSS-CCCEE-CCCCC--------CSSCCEEECCSS-CCCEECSCH-H
T ss_pred             cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCC-CCCcc-ccccc--------CCCCCEEECCCC-cccccCcch-h
Confidence            567899999988655 456677666 9999999996 78887 44555        899999999985 466654432 2


Q ss_pred             ecCCCccEEEecCCCCcccccc--CcccCCCeeeEEecccccccceeeeccccchhhHHhhhh----hcCCCCCcEEEee
Q 009754           82 LEFPSLERVSMTHCPNMKTFSH--GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE----MIGFRDMEYLQLS  155 (526)
Q Consensus        82 ~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~L~~L~l~  155 (526)
                      ..+++|+.|+++++. ++.+|.  .+..+++|++|++++               +.+..++..    +..+++|+.|+++
T Consensus        85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~---------------N~i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILR---------------NPVTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCS---------------SGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecC---------------CCCCCcHhHHHHHHHHCCccceeCCC
Confidence            568999999999984 576665  556677788887772               233333332    4455666666666


Q ss_pred             cCC
Q 009754          156 YFP  158 (526)
Q Consensus       156 ~~~  158 (526)
                      ++.
T Consensus       149 ~n~  151 (176)
T 1a9n_A          149 KVK  151 (176)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.52  E-value=3.9e-07  Score=81.23  Aligned_cols=67  Identities=15%  Similarity=0.261  Sum_probs=27.8

Q ss_pred             hhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754          139 CYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       139 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (526)
                      ++..+..+++|+.|+++++. ++.+....   ...+++|++|+++++ .++.+++ ..+..+++|++|++++|
T Consensus        46 ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~---f~~l~~L~~L~Ls~N-~l~~i~~-~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           46 VPKELSNYKHLTLIDLSNNR-ISTLSNQS---FSNMTQLLTLILSYN-RLRCIPP-RTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             CCGGGGGCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSS
T ss_pred             hHHHhhcccCCCEEECCCCc-CCEeCHhH---ccCCCCCCEEECCCC-ccCEeCH-HHhCCCCCCCEEECCCC
Confidence            33344445555555555543 22211110   023445555555544 2333322 12444555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.50  E-value=1.2e-06  Score=77.98  Aligned_cols=110  Identities=10%  Similarity=0.042  Sum_probs=52.6

Q ss_pred             CCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCcc
Q 009754          372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYA  451 (526)
Q Consensus       372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  451 (526)
                      +|++|+++++ .++.++....+..+++|++|+++++ .++.+..       .....+++|++|+++++ .++.++.....
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~   99 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEP-------NAFEGASHIQELQLGEN-KIKEISNKMFL   99 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCT-------TTTTTCTTCCEEECCSC-CCCEECSSSST
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCH-------hHcCCcccCCEEECCCC-cCCccCHHHhc
Confidence            4555555543 3444433222344555555555543 2332211       01123455555555554 34444443221


Q ss_pred             CCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754          452 LEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       452 ~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~  492 (526)
                       .+++|++|+++++.--...|..+..+++|+.+++.++.+.
T Consensus       100 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          100 -GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             -CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence             2566677776664333333555556667777777555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.46  E-value=1.3e-07  Score=102.11  Aligned_cols=156  Identities=13%  Similarity=0.081  Sum_probs=86.9

Q ss_pred             CCCceEEecccccccEeccccccccccccccccccceeeecccc----ccccccccCceecCCCccEEEecCCCCccccc
Q 009754           27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLP----TLTSFCLENYTLEFPSLERVSMTHCPNMKTFS  102 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  102 (526)
                      +.++.|+|.+. .+..++.....        ..+|..+.+....    .+. ... .....+++|+.|+++++. +..+|
T Consensus       173 ~~~~~l~L~~n-~~~~~~~~~l~--------~l~Ls~~~i~~~~~~~n~~~-~~~-~~~~~l~~L~~L~Ls~n~-l~~l~  240 (727)
T 4b8c_D          173 PLTPKIELFAN-GKDEANQALLQ--------HKKLSQYSIDEDDDIENRMV-MPK-DSKYDDQLWHALDLSNLQ-IFNIS  240 (727)
T ss_dssp             ------------------------------------------------------------CCCCCCEEECTTSC-CSCCC
T ss_pred             CccceEEeeCC-CCCcchhhHhh--------cCccCcccccCcccccccee-cCh-hhhccCCCCcEEECCCCC-CCCCC
Confidence            55777888774 56665543322        3334444433321    111 111 123468899999999985 66888


Q ss_pred             cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754          103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV  182 (526)
Q Consensus       103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l  182 (526)
                      ..+..+++|++|+++               .+.+..++..+..+++|+.|+|+++. ++.++...    ..+++|++|++
T Consensus       241 ~~~~~l~~L~~L~Ls---------------~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~L  300 (727)
T 4b8c_D          241 ANIFKYDFLTRLYLN---------------GNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAEL----GSCFQLKYFYF  300 (727)
T ss_dssp             GGGGGCCSCSCCBCT---------------TSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSG----GGGTTCSEEEC
T ss_pred             hhhcCCCCCCEEEee---------------CCcCcccChhhhCCCCCCEEeCcCCc-CCccChhh----cCCCCCCEEEC
Confidence            888889999999998               34445677778889999999999887 55444444    56889999999


Q ss_pred             ecCCCcccCCChHHHhcCCCCCeeeeccccccchh
Q 009754          183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (526)
Q Consensus       183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (526)
                      ++| .++.++. . ++.+++|++|+|++|.....+
T Consensus       301 ~~N-~l~~lp~-~-~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          301 FDN-MVTTLPW-E-FGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             CSS-CCCCCCS-S-TTSCTTCCCEECTTSCCCSHH
T ss_pred             CCC-CCCccCh-h-hhcCCCccEEeCCCCccCCCC
Confidence            998 5666643 3 889999999999998544333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.44  E-value=2.2e-05  Score=78.24  Aligned_cols=35  Identities=11%  Similarity=0.073  Sum_probs=15.9

Q ss_pred             CCCCCCCEEeeccccCccccccchhhhhccCCceEEEe
Q 009754          368 WHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIA  405 (526)
Q Consensus       368 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~  405 (526)
                      ..+.+|+.+.+..  +++.++..+ ..++.+|+.+++.
T Consensus       294 ~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp  328 (394)
T 4fs7_A          294 YGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLP  328 (394)
T ss_dssp             TTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCC
T ss_pred             ccccccccccccc--ccceechhh-hcCCCCCCEEEeC
Confidence            3445555555543  244443322 2344555555553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.43  E-value=1.5e-06  Score=77.40  Aligned_cols=59  Identities=15%  Similarity=0.107  Sum_probs=31.9

Q ss_pred             CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccc
Q 009754          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKC  381 (526)
Q Consensus       318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c  381 (526)
                      +++|+.|+++++ .++.++...+   ..+++|+.|+++++ .++.++. .+..+++|+.|++++.
T Consensus        77 l~~L~~L~Ls~N-~l~~i~~~~f---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           77 MTQLLTLILSYN-RLRCIPPRTF---DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CTTCCEEECCSS-CCCBCCTTTT---TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCEEECCCC-ccCEeCHHHh---CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence            356666666553 3444443333   45566666666664 3444544 3455666666666653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.42  E-value=2.9e-07  Score=99.35  Aligned_cols=113  Identities=15%  Similarity=0.075  Sum_probs=53.9

Q ss_pred             CCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccc
Q 009754          364 VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLT  443 (526)
Q Consensus       364 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  443 (526)
                      +..+..+++|+.|+++++ .+..++..  +..+++|++|+++++ .++.++.        .+..+++|++|+++++ .++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~--~~~l~~L~~L~Ls~N-~l~~lp~--------~~~~l~~L~~L~Ls~N-~l~  283 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNL-QIFNISAN--IFKYDFLTRLYLNGN-SLTELPA--------EIKNLSNLRVLDLSHN-RLT  283 (727)
T ss_dssp             -----CCCCCCEEECTTS-CCSCCCGG--GGGCCSCSCCBCTTS-CCSCCCG--------GGGGGTTCCEEECTTS-CCS
T ss_pred             hhhhccCCCCcEEECCCC-CCCCCChh--hcCCCCCCEEEeeCC-cCcccCh--------hhhCCCCCCEEeCcCC-cCC
Confidence            334445555555555553 33444432  234555555555554 2333322        1123455555555554 344


Q ss_pred             eecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754          444 SFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       444 ~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~  492 (526)
                      .+|.....  +++|++|++.+| .++.+|..+..+++|+.|++++|++.
T Consensus       284 ~lp~~~~~--l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          284 SLPAELGS--CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SCCSSGGG--GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             ccChhhcC--CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence            55544433  556666666554 44555555555556666666555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.41  E-value=1.3e-07  Score=81.71  Aligned_cols=91  Identities=16%  Similarity=0.228  Sum_probs=42.4

Q ss_pred             CCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccc--cccccceeecccccccceecCCC
Q 009754          372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCN--VFKELRYLELYCLPSLTSFCLGN  449 (526)
Q Consensus       372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~  449 (526)
                      +|++|++++|. +++.....+ ..+++|++|++++|..+++...     ......  ..++|++|++++|+++++-....
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL-----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCL-----ERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHH-----HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHH-----HHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            45555555553 444333222 3455555555555554443321     000000  12345566666665555443332


Q ss_pred             ccCCCCCccEEEEcCCCCcee
Q 009754          450 YALEFPSLKQVVVRQCPKMKI  470 (526)
Q Consensus       450 ~~~~~~~L~~L~l~~C~~l~~  470 (526)
                      .+ .+++|++|++++|++++.
T Consensus       135 L~-~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 LH-HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GG-GCTTCCEEEEESCTTCCC
T ss_pred             Hh-cCCCCCEEECCCCCCCCc
Confidence            22 256666666666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.35  E-value=3.5e-06  Score=73.75  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=27.9

Q ss_pred             hhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          344 KAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       344 ~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      ..+++|+.|+++++ .++.++.. +..+++|++|+++++ .++.++.. ....+++|++|+++++
T Consensus        73 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           73 DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred             cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-HhcCCcccCEEEecCC
Confidence            34445555555543 23333332 344555555555553 34444432 2234455555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.27  E-value=6.5e-05  Score=74.80  Aligned_cols=80  Identities=10%  Similarity=0.052  Sum_probs=40.6

Q ss_pred             hhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccc
Q 009754          344 KAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEA  422 (526)
Q Consensus       344 ~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  422 (526)
                      ..+.+|+.+.+.+  .++.+.. .+..+.+|+.+++..  .++.++..++ .++.+|+.+.+..  .++.+..   +   
T Consensus       294 ~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~---~---  360 (394)
T 4fs7_A          294 YGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPL--SLRKIGA---N---  360 (394)
T ss_dssp             TTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECT---T---
T ss_pred             ccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECc--cccEehH---H---
Confidence            4455666666643  2444432 345556666666643  3555544332 4566666666643  2444433   1   


Q ss_pred             cccccccccceeecc
Q 009754          423 KDCNVFKELRYLELY  437 (526)
Q Consensus       423 ~~~~~~~~L~~L~l~  437 (526)
                       ....+++|+.+.+.
T Consensus       361 -aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          361 -AFQGCINLKKVELP  374 (394)
T ss_dssp             -TBTTCTTCCEEEEE
T ss_pred             -HhhCCCCCCEEEEC
Confidence             11234566666664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.25  E-value=1.4e-08  Score=91.23  Aligned_cols=84  Identities=23%  Similarity=0.249  Sum_probs=44.1

Q ss_pred             CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (526)
                      .+++|+.|+++++. ++.++...    ..+++|++|++++| .++.+ +.  +..+++|++|++++| .+..++.+.   
T Consensus        68 ~l~~L~~L~l~~n~-l~~l~~~~----~~~~~L~~L~L~~N-~l~~l-~~--~~~l~~L~~L~l~~N-~i~~~~~~~---  134 (198)
T 1ds9_A           68 GMENLRILSLGRNL-IKKIENLD----AVADTLEELWISYN-QIASL-SG--IEKLVNLRVLYMSNN-KITNWGEID---  134 (198)
T ss_dssp             HHTTCCEEEEEEEE-ECSCSSHH----HHHHHCSEEEEEEE-ECCCH-HH--HHHHHHSSEEEESEE-ECCCHHHHH---
T ss_pred             cCCCCCEEECCCCC-cccccchh----hcCCcCCEEECcCC-cCCcC-Cc--cccCCCCCEEECCCC-cCCchhHHH---
Confidence            44555555555543 22211111    23466777777766 34443 22  566677777777766 444433211   


Q ss_pred             cccCCCCCCCCccceEecCCCc
Q 009754          225 ADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       225 ~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                           .+..+++|+.|++++++
T Consensus       135 -----~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          135 -----KLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             -----HHTTTTTCSEEEECSCH
T ss_pred             -----HHhcCCCCCEEEecCCc
Confidence                 23456777777777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.23  E-value=9e-06  Score=71.09  Aligned_cols=60  Identities=18%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeecccc
Q 009754          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCH  382 (526)
Q Consensus       318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~  382 (526)
                      +++|+.|+++++ .++.++...+   ..+++|+.|+++++ .++.+|.. +..+++|++|++++++
T Consensus        75 l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           75 LTKLTILYLHEN-KLQSLPNGVF---DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEEECCCC-CccccCHHHh---hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            356666666653 3444444332   55677777777776 45666654 3667888888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.23  E-value=1.8e-08  Score=90.42  Aligned_cols=61  Identities=20%  Similarity=0.173  Sum_probs=34.2

Q ss_pred             CCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccc
Q 009754          146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS  213 (526)
Q Consensus       146 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~  213 (526)
                      +++|+.|+++++. ++.++ ..    ..+++|++|++++|. ++.++....+..+++|++|++++|..
T Consensus        92 ~~~L~~L~L~~N~-l~~l~-~~----~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           92 ADTLEELWISYNQ-IASLS-GI----EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHCSEEEEEEEE-CCCHH-HH----HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCcCCEEECcCCc-CCcCC-cc----ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence            3455555555543 33221 11    345677777777763 44332223467788888888887743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=5e-07  Score=78.06  Aligned_cols=88  Identities=8%  Similarity=0.218  Sum_probs=38.2

Q ss_pred             CccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCC----CCCCCEEeeccccCccccccchhhh
Q 009754          320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWH----LENLEALEVSKCHGLINLLTFSTSE  394 (526)
Q Consensus       320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~l~~~~~~~  394 (526)
                      .|+.|++++|. +++....   ....+++|+.|++++|..+++-. ..+..    .++|++|++++|+++++.....+ .
T Consensus        62 ~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H  136 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred             eEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence            56666666653 3332221   12444555555555554443210 01111    12455555555555554433222 2


Q ss_pred             hccCCceEEEecccCcce
Q 009754          395 SLVNLGRMMIADCKMIEQ  412 (526)
Q Consensus       395 ~l~~L~~L~i~~c~~l~~  412 (526)
                      .+++|++|++++|+++++
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            345555555555554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.94  E-value=2e-05  Score=68.37  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  245 (526)
                      +++|++|+++++ .++.+ +...+..+++|++|++++| .++.++..         .+..+++|+.|+++++
T Consensus        53 l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           53 LTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLNDN-QLKSIPRG---------AFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT---------TTTTCTTCCEEECCSS
T ss_pred             cccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCCC-ccCEeCHH---------HhcCCCCCCEEEeCCC
Confidence            445555555544 23333 2222445555555555555 33333320         2334555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.90  E-value=2.7e-05  Score=67.87  Aligned_cols=60  Identities=15%  Similarity=0.226  Sum_probs=27.5

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL  245 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  245 (526)
                      +++|++|+++++ .++.+ +...+..+++|++|++++| .++.++..         .+..+++|+.|+++++
T Consensus        56 l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N-~l~~l~~~---------~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           56 LVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLDLNDN-HLKSIPRG---------AFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT---------TTTTCTTCSEEECCSS
T ss_pred             CcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEECCCC-ccceeCHH---------HhccccCCCEEEeCCC
Confidence            445555555544 33333 2222445555555555554 33333320         2334555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.87  E-value=7.8e-06  Score=80.12  Aligned_cols=120  Identities=16%  Similarity=0.081  Sum_probs=68.4

Q ss_pred             hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHh--cCCCCCeeeeccccc-----
Q 009754          141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLR--CLNNLQWLEVRNCDS-----  213 (526)
Q Consensus       141 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~--~l~~L~~L~l~~~~~-----  213 (526)
                      ..+..+++|+.|.|+++.++.       ++...+++|++|.+..|. +... ....+.  .+|+|++|+|+.+..     
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~-------l~~~~~~~L~~L~L~~~~-l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLS-------IGKKPRPNLKSLEIISGG-LPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCB-------CCSCBCTTCSEEEEECSB-CCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred             HHHhcCCCCcEEEEeCCCCce-------eccccCCCCcEEEEecCC-CChH-HHHHHHHccCCCCcEEEEeccccccccc
Confidence            344567899999998864332       111236899999998774 3221 111232  789999999864211     


Q ss_pred             --cchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccc
Q 009754          214 --IEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETF  278 (526)
Q Consensus       214 --l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  278 (526)
                        +..+....        ....+|+|+.|.+.+|...............+++|++|+++. +.+.+.
T Consensus       237 ~~~~~l~~~l--------~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~  294 (362)
T 2ra8_A          237 GDMNVFRPLF--------SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDE  294 (362)
T ss_dssp             SCGGGTGGGS--------CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHH
T ss_pred             hhHHHHHHHH--------hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChH
Confidence              11111110        224588999999987643221111100012578899999976 456553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.87  E-value=6.2e-05  Score=65.52  Aligned_cols=58  Identities=14%  Similarity=0.131  Sum_probs=28.5

Q ss_pred             CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccc
Q 009754          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKC  381 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c  381 (526)
                      ++|+.|+++++ .++.++...+   ..+++|+.|+++++ .++.+|.. +..+++|++|+++++
T Consensus        57 ~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           57 VNLQQLYFNSN-KLTAIPTGVF---DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCC-CCCccChhHh---CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence            45555555442 3444433322   44555555555554 34444443 455566666666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.84  E-value=6.9e-05  Score=64.92  Aligned_cols=82  Identities=16%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (526)
                      ++++.|++++. .++.++...+   ..+++|+.|+++++ .++.++.. +..+++|++|+++++ .++.++.. .+..++
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~  102 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVF---DRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNLK  102 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTT---TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred             CCCcEEEcCCC-cCCccChhhh---cCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHH-HhcCCC
Confidence            56666666663 4555543333   55667777777665 35555543 356677777777763 55555543 235566


Q ss_pred             CCceEEEecc
Q 009754          398 NLGRMMIADC  407 (526)
Q Consensus       398 ~L~~L~i~~c  407 (526)
                      +|++|++++.
T Consensus       103 ~L~~L~L~~N  112 (170)
T 3g39_A          103 SLTHIWLLNN  112 (170)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEEeCCC
Confidence            7777776664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.83  E-value=2.7e-05  Score=76.25  Aligned_cols=58  Identities=14%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             cccccceeeeccccc----ccccc---ccCceecCCCccEEEecCCCCccccccCcccCCCeeeEEec
Q 009754           57 AFSKLKVLILDYLPT----LTSFC---LENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVT  117 (526)
Q Consensus        57 ~l~~L~~L~l~~~~~----l~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~  117 (526)
                      .|++|+.|.+.....    +....   .......+|+|+.|.++++..++ ++.  ...++|+.|.+.
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~--~~~~~L~~L~L~  201 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK--KPRPNLKSLEII  201 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS--CBCTTCSEEEEE
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc--ccCCCCcEEEEe
Confidence            478888888765321    11000   11112357888888888774332 222  236777777776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.73  E-value=0.0043  Score=61.47  Aligned_cols=77  Identities=16%  Similarity=0.209  Sum_probs=35.0

Q ss_pred             CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (526)
                      ..|+.+.+.+  .+..+....+   ..++.|+.+.+..  .++.++. .+..+.+|+.+++..  +++.+...++ .++.
T Consensus       265 ~~L~~i~lp~--~~~~I~~~aF---~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~C~  334 (394)
T 4gt6_A          265 AYLASVKMPD--SVVSIGTGAF---MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF-AGCE  334 (394)
T ss_dssp             SSCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCT
T ss_pred             ccccEEeccc--ccceecCccc---ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh-hCCC
Confidence            4445544432  2333433333   4445555555532  3344432 334455566555543  3444444322 4555


Q ss_pred             CCceEEEe
Q 009754          398 NLGRMMIA  405 (526)
Q Consensus       398 ~L~~L~i~  405 (526)
                      +|+.+.|.
T Consensus       335 ~L~~i~ip  342 (394)
T 4gt6_A          335 QLERIAIP  342 (394)
T ss_dssp             TCCEEEEC
T ss_pred             CCCEEEEC
Confidence            56666553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.61  E-value=0.00015  Score=70.79  Aligned_cols=98  Identities=10%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             EeeccCceeecccccCCcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCceecCCCc
Q 009754            9 FNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSL   87 (526)
Q Consensus         9 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L   87 (526)
                      ++++....+..+|.++.+++|++|+|++++.+..+|. .+.+        +++|++|+|+++ .++...... ...+++|
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~--------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L   82 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRG--------LGELRNLTIVKS-GLRFVAPDA-FHFTPRL   82 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCS--------CCCCSEEECCSS-CCCEECTTG-GGSCSCC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhcc--------ccCCCEEECCCC-ccceeCHHH-hcCCcCC
Confidence            4565552344455588888889999986457888875 4554        788888888875 566665543 3468888


Q ss_pred             cEEEecCCCCccccccCcccCCCeeeEEec
Q 009754           88 ERVSMTHCPNMKTFSHGILSTPKLHKVQVT  117 (526)
Q Consensus        88 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~  117 (526)
                      +.|+|+++ .++.+|........|+.|++.
T Consensus        83 ~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~  111 (347)
T 2ifg_A           83 SRLNLSFN-ALESLSWKTVQGLSLQELVLS  111 (347)
T ss_dssp             CEEECCSS-CCSCCCSTTTCSCCCCEEECC
T ss_pred             CEEeCCCC-ccceeCHHHcccCCceEEEee
Confidence            88888887 466676655544447777766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.60  E-value=0.0002  Score=69.86  Aligned_cols=101  Identities=21%  Similarity=0.113  Sum_probs=67.5

Q ss_pred             EEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhccCCce
Q 009754          323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGR  401 (526)
Q Consensus       323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~  401 (526)
                      .++.++.+.++.+|. .    ..+++|+.|+|++++.++.++ ..+..+++|+.|+++++ .+..++... +..+++|+.
T Consensus        12 ~v~~~~~n~l~~ip~-l----~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~   84 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-L----PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSR   84 (347)
T ss_dssp             CEECCSSCCCTTTTT-S----CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCE
T ss_pred             EEEcCCCCCCCccCC-C----CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH-hcCCcCCCE
Confidence            445555435666665 3    667788888888755677776 45778888888888885 677776643 367888888


Q ss_pred             EEEecccCcceeeccCCcccccccccccccceeecccc
Q 009754          402 MMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCL  439 (526)
Q Consensus       402 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  439 (526)
                      |+++++ +++.++.   +.    ...+ .|+.|++.++
T Consensus        85 L~l~~N-~l~~~~~---~~----~~~~-~L~~l~l~~N  113 (347)
T 2ifg_A           85 LNLSFN-ALESLSW---KT----VQGL-SLQELVLSGN  113 (347)
T ss_dssp             EECCSS-CCSCCCS---TT----TCSC-CCCEEECCSS
T ss_pred             EeCCCC-ccceeCH---HH----cccC-CceEEEeeCC
Confidence            888875 5665543   10    0112 3888888765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.58  E-value=8.1e-06  Score=80.55  Aligned_cols=166  Identities=16%  Similarity=0.072  Sum_probs=81.7

Q ss_pred             ccccceeeeccccccccccccCc----eecCCCccEEEecCCCCcccc-ccCc-ccCCCeeeEEecccccccceeeeccc
Q 009754           58 FSKLKVLILDYLPTLTSFCLENY----TLEFPSLERVSMTHCPNMKTF-SHGI-LSTPKLHKVQVTEKEEGELHHWEGNK  131 (526)
Q Consensus        58 l~~L~~L~l~~~~~l~~~~~~~~----~~~~~~L~~L~l~~c~~l~~l-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~  131 (526)
                      .++|++|+++++. ++.......    ....++|+.|++++|. ++.. ...+ ..+++|++|+++++.-          
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l----------  138 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSL----------  138 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCC----------
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCC----------
Confidence            4566666666543 222111110    0123577777777774 3210 0111 1245677777773200          


Q ss_pred             cchhhHHhhhhh-cCCCCCcEEEeecCCCCceeccCCCCC--cCCCCCccEEEEecCCCcccCCC---hHHHhcCCCCCe
Q 009754          132 LNSTIQKCYEEM-IGFRDMEYLQLSYFPHLKEIWHGQALP--VSFFNNLARLVVDDCTNMSSAIP---ANLLRCLNNLQW  205 (526)
Q Consensus       132 ~~~~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~~~---~~~l~~l~~L~~  205 (526)
                      .......+...+ ...++|+.|++++|. +++..... ++  ....++|++|++++|. +++...   ...+...++|++
T Consensus       139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~  215 (372)
T 3un9_A          139 GPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV-LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQE  215 (372)
T ss_dssp             CHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH-HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCE
T ss_pred             CHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHH-HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCe
Confidence            001122233333 246778888888775 44211110 10  0235678888888774 332110   122456778888


Q ss_pred             eeeccccccchhcc--ccccccccCCCCCCCCccceEecCCCc
Q 009754          206 LEVRNCDSIEEVLH--LEEQNADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       206 L~l~~~~~l~~~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                      |++++| .++..+.  +..       .+...++|+.|+++++.
T Consensus       216 L~Ls~N-~i~~~g~~~l~~-------~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          216 LNVAYN-GAGDTAALALAR-------AAREHPSLELLHLYFNE  250 (372)
T ss_dssp             EECCSS-CCCHHHHHHHHH-------HHHHCSSCCEEECTTSS
T ss_pred             EECCCC-CCCHHHHHHHHH-------HHHhCCCCCEEeccCCC
Confidence            888887 4443221  100       22345778888888864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.57  E-value=0.013  Score=58.08  Aligned_cols=299  Identities=12%  Similarity=0.114  Sum_probs=160.2

Q ss_pred             ccCCc-CCCceEEecccccccEeccc-cccccccccccccccceeeeccc--cccccccccCceecCCCccEEEecCCCC
Q 009754           22 QVGIP-SSLVNLNVSRCDKIEEIIRH-VGEEAKENRIAFSKLKVLILDYL--PTLTSFCLENYTLEFPSLERVSMTHCPN   97 (526)
Q Consensus        22 ~~~~l-~~L~~L~L~~c~~l~~l~~~-~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~L~~L~l~~c~~   97 (526)
                      .+..+ ..|+.+.+-.  .++.|... +.+        +.+|+.+.+...  ..++.+..... ..+.+|+.+.+.+  .
T Consensus        58 aF~~~~~~L~sI~iP~--svt~Ig~~AF~~--------C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~--~  124 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPD--TVTEIGSNAFYN--------CTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILD--S  124 (394)
T ss_dssp             TTTTCCSCCCEEEECT--TCCEECTTTTTT--------CTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGT--T
T ss_pred             hccCCCCcCEEEEECC--CeeEEhHHHhhC--------CccCceEeecCCCCCeeeEechhhc-hhcccceeeccCC--c
Confidence            35455 3578888754  47777553 333        778888887642  23555444431 2356666654432  2


Q ss_pred             ccccccCc-ccCCCeeeEEecccccccceeeeccccchhhHHhh-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCC
Q 009754           98 MKTFSHGI-LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN  175 (526)
Q Consensus        98 l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~  175 (526)
                      ++.+.... ..+.+|+.+.+..                ....+. ..+..+.+|+.+.+...  ++.+....    -...
T Consensus       125 ~~~I~~~aF~~c~~L~~i~lp~----------------~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~a----F~~~  182 (394)
T 4gt6_A          125 VTEIDSEAFHHCEELDTVTIPE----------------GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERA----FTGT  182 (394)
T ss_dssp             CSEECTTTTTTCTTCCEEECCT----------------TCCEECTTTTTTCTTCCEEECCTT--CCEECTTT----TTTC
T ss_pred             cceehhhhhhhhcccccccccc----------------eeeeecccceecccccccccccce--eeEecccc----cccc
Confidence            34443322 3466777777752                111111 23446778888887642  44443333    2246


Q ss_pred             CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcc-ccccccccCC---CCCCCCccceEecCCCcccccc
Q 009754          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH-LEEQNADKEH---RGPLFPKLYGLRLIDLPKLKRF  251 (526)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~~  251 (526)
                      +|+.+.+...  ++.+ ....+..+..++......... ..+.. ..........   .......+..+.+-.  .++.+
T Consensus       183 ~l~~i~ip~~--~~~i-~~~af~~c~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i  256 (394)
T 4gt6_A          183 ALTQIHIPAK--VTRI-GTNAFSECFALSTITSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARI  256 (394)
T ss_dssp             CCSEEEECTT--CCEE-CTTTTTTCTTCCEEEECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEE
T ss_pred             ceeEEEECCc--cccc-ccchhhhccccceeccccccc-ccccceeecccccccccccccccccccceEEcCC--cceEc
Confidence            7888888653  3333 233366777777776644311 11100 0000000000   001112233333321  22222


Q ss_pred             ccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCC
Q 009754          252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK  331 (526)
Q Consensus       252 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  331 (526)
                        ....+..+..|+.+.+.+.  +..+....                                ..+++.|+.+.+..  .
T Consensus       257 --~~~aF~~c~~L~~i~lp~~--~~~I~~~a--------------------------------F~~c~~L~~i~l~~--~  298 (394)
T 4gt6_A          257 --ETHAFDSCAYLASVKMPDS--VVSIGTGA--------------------------------FMNCPALQDIEFSS--R  298 (394)
T ss_dssp             --CTTTTTTCSSCCEEECCTT--CCEECTTT--------------------------------TTTCTTCCEEECCT--T
T ss_pred             --ccceeeecccccEEecccc--cceecCcc--------------------------------cccccccccccCCC--c
Confidence              1223556777777776541  22211111                                12457888888853  5


Q ss_pred             ceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          332 VQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      ++.++...|   ..+.+|+++.+.+  .++.+. ..+..+.+|+.+.+..  +++.+...++ .++++|+.+++.+.
T Consensus       299 i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          299 ITELPESVF---AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESSC
T ss_pred             ccccCceee---cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECCc
Confidence            777777666   7788999999865  466664 3567788999999864  4677766543 68889999988763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.43  E-value=0.017  Score=56.62  Aligned_cols=112  Identities=14%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhc
Q 009754          318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESL  396 (526)
Q Consensus       318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l  396 (526)
                      +..|+.+.+..  .++.+....+   ..+.+|+.+.+..  .++.++. .+..+++|+.+.+.+ ..++.++..++ .++
T Consensus       239 ~~~L~~i~lp~--~v~~I~~~aF---~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF-~~c  309 (379)
T 4h09_A          239 MKALDEIAIPK--NVTSIGSFLL---QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVF-MDC  309 (379)
T ss_dssp             CSSCCEEEECT--TCCEECTTTT---TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTT-TTC
T ss_pred             CccceEEEcCC--CccEeCcccc---ceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhh-cCC
Confidence            45677777654  3566655544   5667777777754  3555543 456677788887765 24556655433 567


Q ss_pred             cCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCC
Q 009754          397 VNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGN  449 (526)
Q Consensus       397 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  449 (526)
                      .+|+.+.+.+  .++.+..   .    ....+.+|+.+.+..  +++.+....
T Consensus       310 ~~L~~i~lp~--~l~~I~~---~----aF~~C~~L~~i~ip~--~v~~I~~~a  351 (379)
T 4h09_A          310 VKLSSVTLPT--ALKTIQV---Y----AFKNCKALSTISYPK--SITLIESGA  351 (379)
T ss_dssp             TTCCEEECCT--TCCEECT---T----TTTTCTTCCCCCCCT--TCCEECTTT
T ss_pred             CCCCEEEcCc--cccEEHH---H----HhhCCCCCCEEEECC--ccCEEchhH
Confidence            7788887753  4555543   1    112356677776643  466665544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.42  E-value=5.9e-06  Score=81.55  Aligned_cols=39  Identities=13%  Similarity=0.032  Sum_probs=16.5

Q ss_pred             CCCCCCCEEeeccccCccccccchhh---hhccCCceEEEecc
Q 009754          368 WHLENLEALEVSKCHGLINLLTFSTS---ESLVNLGRMMIADC  407 (526)
Q Consensus       368 ~~l~~L~~L~l~~c~~l~~l~~~~~~---~~l~~L~~L~i~~c  407 (526)
                      ...++|++|++++| .+++.....++   ...++|++|+++++
T Consensus       208 ~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          208 DRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             GGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             hcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            33445555555554 33332221111   22345555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.37  E-value=0.039  Score=54.11  Aligned_cols=131  Identities=11%  Similarity=0.137  Sum_probs=70.3

Q ss_pred             CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (526)
                      ..++.+.+..  .++.+....+   ..+..|+.+.+..  .++.+. ..+..+.+|+.+.+..  .++.++..+ ...++
T Consensus       217 ~~l~~i~~~~--~~~~i~~~~f---~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~a-F~~c~  286 (379)
T 4h09_A          217 KNLKKITITS--GVTTLGDGAF---YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLL-CSGCS  286 (379)
T ss_dssp             SSCSEEECCT--TCCEECTTTT---TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTT-TTTCT
T ss_pred             cccceeeecc--ceeEEccccc---cCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccc-ccccc
Confidence            4555555543  3445544433   5566777777754  244443 2345566777777753  355555432 35667


Q ss_pred             CCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceecc
Q 009754          398 NLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS  472 (526)
Q Consensus       398 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp  472 (526)
                      +|+.+.+.+. .++.+..   +    ....+.+|+.+.+..  +++.+...... .|.+|+++.+..  +++.+.
T Consensus       287 ~L~~i~l~~~-~i~~I~~---~----aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~ip~--~v~~I~  348 (379)
T 4h09_A          287 NLTKVVMDNS-AIETLEP---R----VFMDCVKLSSVTLPT--ALKTIQVYAFK-NCKALSTISYPK--SITLIE  348 (379)
T ss_dssp             TCCEEEECCT-TCCEECT---T----TTTTCTTCCEEECCT--TCCEECTTTTT-TCTTCCCCCCCT--TCCEEC
T ss_pred             cccccccccc-ccceehh---h----hhcCCCCCCEEEcCc--cccEEHHHHhh-CCCCCCEEEECC--ccCEEc
Confidence            7777777542 3555533   1    112346677766642  35666554433 466777766632  355444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.56  E-value=0.011  Score=51.48  Aligned_cols=19  Identities=11%  Similarity=-0.102  Sum_probs=10.2

Q ss_pred             hhhhcCCCCCcEEEeecCC
Q 009754          140 YEEMIGFRDMEYLQLSYFP  158 (526)
Q Consensus       140 ~~~~~~~~~L~~L~l~~~~  158 (526)
                      ...+...++|++|+|+++.
T Consensus        86 ~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           86 AEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHhCCCcCEEECcCCc
Confidence            3344444556666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.24  E-value=0.019  Score=53.07  Aligned_cols=87  Identities=16%  Similarity=0.127  Sum_probs=47.0

Q ss_pred             CCCCccEEEEecCCCcccCCC-hHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754          173 FFNNLARLVVDDCTNMSSAIP-ANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  251 (526)
                      .+++|++|+++++ .++.+.+ ...+..+++|+.|+|++| .++.+.++.        .+..+ +|+.|.+.+++--..+
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~--------~l~~l-~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD--------KIKGL-KLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGG--------GGTTS-CCSEEECTTSTTGGGC
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhh--------hcccC-CcceEEccCCcCcccc
Confidence            3566777777766 3443321 123567788888888776 455543322        22233 7788888776532222


Q ss_pred             ccC----CCccccCCCcceEeee
Q 009754          252 CNF----TGNIIELPELQHLTIQ  270 (526)
Q Consensus       252 ~~~----~~~~~~~~~L~~L~l~  270 (526)
                      +..    ...+..+|+|+.|+=.
T Consensus       237 ~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          237 RDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             SSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CcchhHHHHHHHHCcccCeECCc
Confidence            110    0114567777777643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.23  E-value=0.0042  Score=54.32  Aligned_cols=60  Identities=18%  Similarity=0.090  Sum_probs=30.9

Q ss_pred             hcccceeEeccCcCcc-----ccCCCCCCCCCCCEEee--ccccCccccccch---hhhhccCCceEEEecc
Q 009754          346 FANLESLEISECSKLQ-----KLVPPSWHLENLEALEV--SKCHGLINLLTFS---TSESLVNLGRMMIADC  407 (526)
Q Consensus       346 l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l--~~c~~l~~l~~~~---~~~~l~~L~~L~i~~c  407 (526)
                      .++|++|++++|. ++     .+...+...++|++|++  ++ +.+.+-....   .+...++|++|+++++
T Consensus        92 n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           92 NNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3456666665543 22     12334455566777777  44 3444432211   2234467777777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.27  E-value=0.029  Score=51.86  Aligned_cols=12  Identities=33%  Similarity=0.415  Sum_probs=5.5

Q ss_pred             CCCCCCEEeecc
Q 009754          369 HLENLEALEVSK  380 (526)
Q Consensus       369 ~l~~L~~L~l~~  380 (526)
                      .+++|+.|++++
T Consensus       194 ~l~~L~~L~Ls~  205 (267)
T 3rw6_A          194 KAPNLKILNLSG  205 (267)
T ss_dssp             HSTTCCEEECTT
T ss_pred             hCCCCCEEECCC
Confidence            344444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	526
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.5
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.34
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.33
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.31
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.16
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.4
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.01
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	88.93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.2e-15  Score=148.39  Aligned_cols=330  Identities=14%  Similarity=0.175  Sum_probs=185.8

Q ss_pred             ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754            3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL   82 (526)
Q Consensus         3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   82 (526)
                      +++++.|+++.+... .+..++.+++|++|+++++ +++++|. +.+        +++|++|++.+++ ++++..   ..
T Consensus        43 l~~l~~L~l~~~~I~-~l~gl~~L~nL~~L~Ls~N-~l~~l~~-l~~--------L~~L~~L~L~~n~-i~~i~~---l~  107 (384)
T d2omza2          43 LDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN-QLTDITP-LKN--------LTKLVDILMNNNQ-IADITP---LA  107 (384)
T ss_dssp             HTTCCEEECCSSCCC-CCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSSC-CCCCGG---GT
T ss_pred             hCCCCEEECCCCCCC-CccccccCCCCCEEeCcCC-cCCCCcc-ccC--------Ccccccccccccc-cccccc---cc
Confidence            467899999877654 5778889999999999996 7999874 555        8999999999875 444432   34


Q ss_pred             cCCCccEEEecCCCCccccccCcccCCCeeeEEeccccc----------ccceeeeccccchhhHHhhhhhcCCCCCcEE
Q 009754           83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEE----------GELHHWEGNKLNSTIQKCYEEMIGFRDMEYL  152 (526)
Q Consensus        83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L  152 (526)
                      .+++|+.|+++++. .+.++.. .....+..........          .......+. ...    ....+.........
T Consensus       108 ~l~~L~~L~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~  180 (384)
T d2omza2         108 NLTNLTGLTLFNNQ-ITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVT----DLKPLANLTTLERL  180 (384)
T ss_dssp             TCTTCCEEECCSSC-CCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCC----CCGGGTTCTTCCEE
T ss_pred             cccccccccccccc-ccccccc-ccccccccccccccccccccccccccccccccccc-ccc----hhhhhccccccccc
Confidence            68999999998874 3333221 2223333333321000          000000000 000    00011122222222


Q ss_pred             EeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCC
Q 009754          153 QLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGP  232 (526)
Q Consensus       153 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  232 (526)
                      ....+....  +..    ...+++++.+.++++ .++.+.+   ...+++|++|++++| .++.++           ...
T Consensus       181 ~~~~~~~~~--~~~----~~~l~~~~~l~l~~n-~i~~~~~---~~~~~~L~~L~l~~n-~l~~~~-----------~l~  238 (384)
T d2omza2         181 DISSNKVSD--ISV----LAKLTNLESLIATNN-QISDITP---LGILTNLDELSLNGN-QLKDIG-----------TLA  238 (384)
T ss_dssp             ECCSSCCCC--CGG----GGGCTTCSEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCG-----------GGG
T ss_pred             ccccccccc--ccc----cccccccceeeccCC-ccCCCCc---ccccCCCCEEECCCC-CCCCcc-----------hhh
Confidence            222221111  111    134677777777776 3444433   566777888888777 454443           234


Q ss_pred             CCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhcccccccc
Q 009754          233 LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF  312 (526)
Q Consensus       233 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~  312 (526)
                      .+++|+.|+++++. +.+++.    +..+++|++|+++++ ++...++                                
T Consensus       239 ~l~~L~~L~l~~n~-l~~~~~----~~~~~~L~~L~l~~~-~l~~~~~--------------------------------  280 (384)
T d2omza2         239 SLTNLTDLDLANNQ-ISNLAP----LSGLTKLTELKLGAN-QISNISP--------------------------------  280 (384)
T ss_dssp             GCTTCSEEECCSSC-CCCCGG----GTTCTTCSEEECCSS-CCCCCGG--------------------------------
T ss_pred             cccccchhccccCc-cCCCCc----ccccccCCEeeccCc-ccCCCCc--------------------------------
Confidence            56777777777753 444432    456777777777764 3433221                                


Q ss_pred             ccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchh
Q 009754          313 DEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFST  392 (526)
Q Consensus       313 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  392 (526)
                        ...++.++.+.+..+ .++.+.. .    ..+++++.|+++++ .++.++ .+..+++|++|++++| .+++++.   
T Consensus       281 --~~~~~~l~~l~~~~n-~l~~~~~-~----~~~~~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~---  346 (384)
T d2omza2         281 --LAGLTALTNLELNEN-QLEDISP-I----SNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANN-KVSDVSS---  346 (384)
T ss_dssp             --GTTCTTCSEEECCSS-CCSCCGG-G----GGCTTCSEEECCSS-CCSCCG-GGGGCTTCCEEECCSS-CCCCCGG---
T ss_pred             --ccccccccccccccc-ccccccc-c----chhcccCeEECCCC-CCCCCc-ccccCCCCCEEECCCC-CCCCChh---
Confidence              112356666666653 2332211 1    55677777777765 355553 3566777777777775 5665542   


Q ss_pred             hhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccc
Q 009754          393 SESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYC  438 (526)
Q Consensus       393 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  438 (526)
                      +..+++|++|+++++ +++++..         ...+++|+.|++++
T Consensus       347 l~~l~~L~~L~l~~N-~l~~l~~---------l~~l~~L~~L~L~~  382 (384)
T d2omza2         347 LANLTNINWLSAGHN-QISDLTP---------LANLTRITQLGLND  382 (384)
T ss_dssp             GGGCTTCCEEECCSS-CCCBCGG---------GTTCTTCSEEECCC
T ss_pred             HcCCCCCCEEECCCC-cCCCChh---------hccCCCCCEeeCCC
Confidence            356777777777665 4554432         13467777777765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.3e-14  Score=142.70  Aligned_cols=332  Identities=17%  Similarity=0.220  Sum_probs=207.6

Q ss_pred             cccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCc
Q 009754           19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM   98 (526)
Q Consensus        19 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l   98 (526)
                      ...+...+.+|++|+++++ .+.++. .+..        +++|++|+++++ .+++++.   ...+++|++|++++|+ +
T Consensus        36 ~~~~~~~l~~l~~L~l~~~-~I~~l~-gl~~--------L~nL~~L~Ls~N-~l~~l~~---l~~L~~L~~L~L~~n~-i  100 (384)
T d2omza2          36 DTVSQTDLDQVTTLQADRL-GIKSID-GVEY--------LNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-I  100 (384)
T ss_dssp             SEECHHHHTTCCEEECCSS-CCCCCT-TGGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-C
T ss_pred             CccCHHHhCCCCEEECCCC-CCCCcc-cccc--------CCCCCEEeCcCC-cCCCCcc---ccCCcccccccccccc-c
Confidence            3445567889999999997 687763 4554        899999999986 5777653   3469999999999995 5


Q ss_pred             cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCC--CCceec-----------c
Q 009754           99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP--HLKEIW-----------H  165 (526)
Q Consensus        99 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~l~~~~-----------~  165 (526)
                      +.++ .+..+++|+.+++.+...               ..+.. ......+.........  .+....           .
T Consensus       101 ~~i~-~l~~l~~L~~L~~~~~~~---------------~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  163 (384)
T d2omza2         101 ADIT-PLANLTNLTGLTLFNNQI---------------TDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN  163 (384)
T ss_dssp             CCCG-GGTTCTTCCEEECCSSCC---------------CCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred             cccc-cccccccccccccccccc---------------ccccc-cccccccccccccccccccccccccccccccccccc
Confidence            5553 366789999999874211               11110 0111222222222110  000000           0


Q ss_pred             CC-CCC-cCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecC
Q 009754          166 GQ-ALP-VSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLI  243 (526)
Q Consensus       166 ~~-~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  243 (526)
                      .. ... ..............+. .. .  ......++.++.++++++ .++.++.           ....++|+.|.++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~~~~~l~~~~~l~l~~n-~i~~~~~-----------~~~~~~L~~L~l~  227 (384)
T d2omza2         164 QVTDLKPLANLTTLERLDISSNK-VS-D--ISVLAKLTNLESLIATNN-QISDITP-----------LGILTNLDELSLN  227 (384)
T ss_dssp             SCCCCGGGTTCTTCCEEECCSSC-CC-C--CGGGGGCTTCSEEECCSS-CCCCCGG-----------GGGCTTCCEEECC
T ss_pred             ccchhhhhccccccccccccccc-cc-c--ccccccccccceeeccCC-ccCCCCc-----------ccccCCCCEEECC
Confidence            00 000 0112222222222221 11 1  112667788888888876 3444432           2346778888888


Q ss_pred             CCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccE
Q 009754          244 DLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRW  323 (526)
Q Consensus       244 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  323 (526)
                      ++ .+++++.    +..+++|+.|++.++ ++++.++                                  ...+++|+.
T Consensus       228 ~n-~l~~~~~----l~~l~~L~~L~l~~n-~l~~~~~----------------------------------~~~~~~L~~  267 (384)
T d2omza2         228 GN-QLKDIGT----LASLTNLTDLDLANN-QISNLAP----------------------------------LSGLTKLTE  267 (384)
T ss_dssp             SS-CCCCCGG----GGGCTTCSEEECCSS-CCCCCGG----------------------------------GTTCTTCSE
T ss_pred             CC-CCCCcch----hhcccccchhccccC-ccCCCCc----------------------------------ccccccCCE
Confidence            76 3454432    557788888888875 3444321                                  124589999


Q ss_pred             EEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEE
Q 009754          324 LELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMM  403 (526)
Q Consensus       324 L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~  403 (526)
                      |+++++. ++.++.     ...++.++.+.+.++. ++.+ ..+..+++++.|+++++ .+++++.   +..+++|++|+
T Consensus       268 L~l~~~~-l~~~~~-----~~~~~~l~~l~~~~n~-l~~~-~~~~~~~~l~~L~ls~n-~l~~l~~---l~~l~~L~~L~  335 (384)
T d2omza2         268 LKLGANQ-ISNISP-----LAGLTALTNLELNENQ-LEDI-SPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLF  335 (384)
T ss_dssp             EECCSSC-CCCCGG-----GTTCTTCSEEECCSSC-CSCC-GGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEE
T ss_pred             eeccCcc-cCCCCc-----cccccccccccccccc-cccc-cccchhcccCeEECCCC-CCCCCcc---cccCCCCCEEE
Confidence            9998753 444321     1667889999998764 5554 34677899999999986 6777653   47899999999


Q ss_pred             EecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcC
Q 009754          404 IADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQ  464 (526)
Q Consensus       404 i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~  464 (526)
                      +++| .++++..         ...+++|++|+++++ .+++++. ..  .+++|++|++++
T Consensus       336 L~~n-~l~~l~~---------l~~l~~L~~L~l~~N-~l~~l~~-l~--~l~~L~~L~L~~  382 (384)
T d2omza2         336 FANN-KVSDVSS---------LANLTNINWLSAGHN-QISDLTP-LA--NLTRITQLGLND  382 (384)
T ss_dssp             CCSS-CCCCCGG---------GGGCTTCCEEECCSS-CCCBCGG-GT--TCTTCSEEECCC
T ss_pred             CCCC-CCCCChh---------HcCCCCCCEEECCCC-cCCCChh-hc--cCCCCCEeeCCC
Confidence            9998 5665532         135899999999987 6777764 22  389999999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=2.7e-13  Score=128.90  Aligned_cols=203  Identities=15%  Similarity=0.097  Sum_probs=109.2

Q ss_pred             hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccc
Q 009754          143 MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE  222 (526)
Q Consensus       143 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  222 (526)
                      +..+++|+.|+++++. ++.++.      ..+..+++|.+.++. +..+ +...+.....+..++...+.......... 
T Consensus        75 f~~l~~L~~L~l~~n~-l~~l~~------~~~~~l~~L~~~~n~-l~~l-~~~~~~~~~~~~~l~~~~n~~~~~~~~~~-  144 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQ-LKELPE------KMPKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENG-  144 (305)
T ss_dssp             TTTCTTCCEEECCSSC-CSBCCS------SCCTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTT-
T ss_pred             hhCCCccCEecccCCc-cCcCcc------chhhhhhhhhccccc-hhhh-hhhhhhccccccccccccccccccCCCcc-
Confidence            4455666666666654 333221      334567777766653 3333 33335556666666665543222111100 


Q ss_pred             cccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhh
Q 009754          223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENF  302 (526)
Q Consensus       223 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~  302 (526)
                             ....+++|+.+++.++. +..++.     ..+++|++|++.++. .....+..+                   
T Consensus       145 -------~~~~l~~L~~l~l~~n~-l~~l~~-----~~~~~L~~L~l~~n~-~~~~~~~~~-------------------  191 (305)
T d1xkua_         145 -------AFQGMKKLSYIRIADTN-ITTIPQ-----GLPPSLTELHLDGNK-ITKVDAASL-------------------  191 (305)
T ss_dssp             -------GGGGCTTCCEEECCSSC-CCSCCS-----SCCTTCSEEECTTSC-CCEECTGGG-------------------
T ss_pred             -------ccccccccCccccccCC-ccccCc-----ccCCccCEEECCCCc-CCCCChhHh-------------------
Confidence                   33445666677766642 333321     135666777766642 222222111                   


Q ss_pred             hhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecccc
Q 009754          303 LLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH  382 (526)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  382 (526)
                                   ..++.++.|+++++ .++.++...+   ..+++|++|++++| .++.+|.++..+++|++|+++++ 
T Consensus       192 -------------~~~~~l~~L~~s~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-  252 (305)
T d1xkua_         192 -------------KGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-  252 (305)
T ss_dssp             -------------TTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-
T ss_pred             -------------hccccccccccccc-cccccccccc---cccccceeeecccc-cccccccccccccCCCEEECCCC-
Confidence                         23467777777764 4556554443   56677777777776 46677777777777777777774 


Q ss_pred             Cccccccchh-----hhhccCCceEEEecc
Q 009754          383 GLINLLTFST-----SESLVNLGRMMIADC  407 (526)
Q Consensus       383 ~l~~l~~~~~-----~~~l~~L~~L~i~~c  407 (526)
                      +++.++...+     ....++|+.|+++++
T Consensus       253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         253 NISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             ccCccChhhccCcchhcccCCCCEEECCCC
Confidence            5666644322     123455555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=3.3e-13  Score=128.23  Aligned_cols=65  Identities=17%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             hhhcccceeEeccCcCcccc-CCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCccee
Q 009754          344 KAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQI  413 (526)
Q Consensus       344 ~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~  413 (526)
                      ..++.++.|+++++. ++.+ +.++..+++|++|+++++ .++.+|.  .+..+++|+.|+++++ +++.+
T Consensus       192 ~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~--~l~~l~~L~~L~Ls~N-~i~~i  257 (305)
T d1xkua_         192 KGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN-NISAI  257 (305)
T ss_dssp             TTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS-CCCCC
T ss_pred             hcccccccccccccc-ccccccccccccccceeeecccc-ccccccc--ccccccCCCEEECCCC-ccCcc
Confidence            444555555555442 3333 233444555555555554 3444433  1234555555555553 34433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=4.5e-14  Score=134.90  Aligned_cols=80  Identities=14%  Similarity=0.161  Sum_probs=43.7

Q ss_pred             CCCceEEeccccccc---Eeccccccccccccccccccceeeecccccccc-ccccCceecCCCccEEEecCCCCccccc
Q 009754           27 SSLVNLNVSRCDKIE---EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTS-FCLENYTLEFPSLERVSMTHCPNMKTFS  102 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~---~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~  102 (526)
                      ..++.|+|+++ .+.   .+|..+++        +++|++|+++++..+++ ++..  ...+++|++|+++++......+
T Consensus        50 ~~v~~L~L~~~-~l~g~~~lp~~l~~--------L~~L~~L~Ls~~N~l~g~iP~~--i~~L~~L~~L~Ls~N~l~~~~~  118 (313)
T d1ogqa_          50 YRVNNLDLSGL-NLPKPYPIPSSLAN--------LPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGG--------CTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECC
T ss_pred             EEEEEEECCCC-CCCCCCCCChHHhc--------Cccccccccccccccccccccc--cccccccchhhhcccccccccc
Confidence            35677777775 333   45666665        66777777766555542 3222  3456666666666664322233


Q ss_pred             cCcccCCCeeeEEec
Q 009754          103 HGILSTPKLHKVQVT  117 (526)
Q Consensus       103 ~~~~~~~~L~~L~l~  117 (526)
                      ..+..+.+|+.++++
T Consensus       119 ~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_         119 DFLSQIKTLVTLDFS  133 (313)
T ss_dssp             GGGGGCTTCCEEECC
T ss_pred             ccccchhhhcccccc
Confidence            333445555555555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.50  E-value=8.2e-13  Score=127.80  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=50.7

Q ss_pred             hccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC
Q 009754          395 SLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG  474 (526)
Q Consensus       395 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~  474 (526)
                      .+++|++|++++| +++.++.           .+++|+.|+++++ .+++++..     +++|++|++++|+ ++.+|. 
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~-----------~~~~L~~L~L~~N-~L~~l~~~-----~~~L~~L~L~~N~-L~~lp~-  341 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPA-----------LPPRLERLIASFN-HLAEVPEL-----PQNLKQLHVEYNP-LREFPD-  341 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSSC-CSSCCC-
T ss_pred             cCCCCCEEECCCC-ccCcccc-----------ccCCCCEEECCCC-cCCccccc-----cCCCCEEECcCCc-CCCCCc-
Confidence            3578888888887 4665543           3688888888876 57777642     5688888888875 888886 


Q ss_pred             CCCCCCcceEEe
Q 009754          475 VLDTPMLNKVNV  486 (526)
Q Consensus       475 ~~~~~~L~~l~l  486 (526)
                        .+++|+.|.+
T Consensus       342 --~~~~L~~L~~  351 (353)
T d1jl5a_         342 --IPESVEDLRM  351 (353)
T ss_dssp             --CCTTCCEEEC
T ss_pred             --cccccCeeEC
Confidence              3456777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.49  E-value=8.6e-14  Score=132.91  Aligned_cols=235  Identities=14%  Similarity=0.086  Sum_probs=113.5

Q ss_pred             hhhhhcCCCCCcEEEeecCCCCc-eeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchh
Q 009754          139 CYEEMIGFRDMEYLQLSYFPHLK-EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV  217 (526)
Q Consensus       139 l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~  217 (526)
                      ++..+..+++|++|+++++.++. .++...    +.+++|++|++++|. +...++. .+..++.|+++++++|.....+
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i----~~L~~L~~L~Ls~N~-l~~~~~~-~~~~~~~L~~l~l~~N~~~~~~  141 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHTN-VSGAIPD-FLSQIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEEC-CEEECCG-GGGGCTTCCEEECCSSEEESCC
T ss_pred             CChHHhcCcccccccccccccccccccccc----ccccccchhhhcccc-ccccccc-cccchhhhcccccccccccccC
Confidence            33444455555555555433232 222222    345566666666553 2222222 2555666666666665444444


Q ss_pred             ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCc-ceEeeecCCCCccccCcccceeeecCCCCccc
Q 009754          218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPEL-QHLTIQNCPDMETFISNSVVHVTTDNKEPQKL  296 (526)
Q Consensus       218 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L-~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~  296 (526)
                      |.          .+..+++|+.++++++..-..+|..   +..+..+ +.+.+++ .+++...+..+.            
T Consensus       142 p~----------~l~~l~~L~~l~l~~n~l~~~ip~~---~~~l~~l~~~l~~~~-n~l~~~~~~~~~------------  195 (313)
T d1ogqa_         142 PP----------SISSLPNLVGITFDGNRISGAIPDS---YGSFSKLFTSMTISR-NRLTGKIPPTFA------------  195 (313)
T ss_dssp             CG----------GGGGCTTCCEEECCSSCCEEECCGG---GGCCCTTCCEEECCS-SEEEEECCGGGG------------
T ss_pred             ch----------hhccCcccceeeccccccccccccc---ccccccccccccccc-cccccccccccc------------
Confidence            33          3345566666666654332233222   3344443 4444444 334333322211            


Q ss_pred             cchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEE
Q 009754          297 TSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEAL  376 (526)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  376 (526)
                                          + .....+++..+.....++...    ..+++|+.+++.++. +...+..+..+++|++|
T Consensus       196 --------------------~-l~~~~l~l~~~~~~~~~~~~~----~~~~~l~~l~~~~~~-l~~~~~~~~~~~~L~~L  249 (313)
T d1ogqa_         196 --------------------N-LNLAFVDLSRNMLEGDASVLF----GSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGL  249 (313)
T ss_dssp             --------------------G-CCCSEEECCSSEEEECCGGGC----CTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEE
T ss_pred             --------------------c-ccccccccccccccccccccc----ccccccccccccccc-ccccccccccccccccc
Confidence                                1 123345555433222232222    556677777776654 33333455666777777


Q ss_pred             eeccccCcc-ccccchhhhhccCCceEEEecccCcc-eeeccCCcccccccccccccceeecccccccce
Q 009754          377 EVSKCHGLI-NLLTFSTSESLVNLGRMMIADCKMIE-QIIQLQVGEEAKDCNVFKELRYLELYCLPSLTS  444 (526)
Q Consensus       377 ~l~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  444 (526)
                      +++++ +++ .+|.  .+..+++|++|+++++ +++ .++.         ...+.+|+.+++.+++.+..
T Consensus       250 ~Ls~N-~l~g~iP~--~l~~L~~L~~L~Ls~N-~l~g~iP~---------~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         250 DLRNN-RIYGTLPQ--GLTQLKFLHSLNVSFN-NLCGEIPQ---------GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCSS-CCEECCCG--GGGGCTTCCEEECCSS-EEEEECCC---------STTGGGSCGGGTCSSSEEES
T ss_pred             cCccC-eecccCCh--HHhCCCCCCEEECcCC-cccccCCC---------cccCCCCCHHHhCCCccccC
Confidence            77775 343 4444  2456777777777765 343 2222         02355666666666554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.48  E-value=4.4e-12  Score=122.54  Aligned_cols=70  Identities=23%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             CCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCC
Q 009754          370 LENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGN  449 (526)
Q Consensus       370 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  449 (526)
                      +++|++|++++| .++.+|.     .+++|+.|++++| ++++++.           .+++|++|++++|+ ++++|.. 
T Consensus       283 ~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~L~~l~~-----------~~~~L~~L~L~~N~-L~~lp~~-  342 (353)
T d1jl5a_         283 PPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE-----------LPQNLKQLHVEYNP-LREFPDI-  342 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSSC-CSSCCCC-
T ss_pred             CCCCCEEECCCC-ccCcccc-----ccCCCCEEECCCC-cCCcccc-----------ccCCCCEEECcCCc-CCCCCcc-
Confidence            467888888775 4666653     3567888888765 4665543           25678888888875 7777752 


Q ss_pred             ccCCCCCccEEEEc
Q 009754          450 YALEFPSLKQVVVR  463 (526)
Q Consensus       450 ~~~~~~~L~~L~l~  463 (526)
                          .++|++|.+.
T Consensus       343 ----~~~L~~L~~~  352 (353)
T d1jl5a_         343 ----PESVEDLRMN  352 (353)
T ss_dssp             ----CTTCCEEECC
T ss_pred             ----ccccCeeECc
Confidence                3467777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.9e-14  Score=135.27  Aligned_cols=190  Identities=16%  Similarity=0.169  Sum_probs=121.5

Q ss_pred             CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754          173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC  252 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  252 (526)
                      ...+|++|++++|. +.......++..+++|++|++++|..-...+.          .++.+++|++|++++|..+++..
T Consensus        44 ~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~----------~l~~~~~L~~L~Ls~c~~itd~~  112 (284)
T d2astb2          44 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN----------TLAKNSNLVRLNLSGCSGFSEFA  112 (284)
T ss_dssp             CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH----------HHTTCTTCSEEECTTCBSCCHHH
T ss_pred             cCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHHH----------HHhcCCCCcCccccccccccccc
Confidence            35688888888774 33221334577888999999988842222222          33457889999999887776432


Q ss_pred             cCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCC-C
Q 009754          253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH-K  331 (526)
Q Consensus       253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~  331 (526)
                      ...- ...+++|++|++++|.++++......                   .           ...++.|+.|++.+|. .
T Consensus       113 l~~l-~~~~~~L~~L~ls~c~~~~~~~~~~~-------------------~-----------~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2         113 LQTL-LSSCSRLDELNLSWCFDFTEKHVQVA-------------------V-----------AHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             HHHH-HHHCTTCCEEECCCCTTCCHHHHHHH-------------------H-----------HHSCTTCCEEECCSCGGG
T ss_pred             cchh-hHHHHhccccccccccccccccchhh-------------------h-----------cccccccchhhhcccccc
Confidence            1111 34688999999998877654321000                   0           0123678888888763 2


Q ss_pred             ceEecccCChhhhhhcccceeEeccCcCccc-cCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          332 VQHLWKENDESNKAFANLESLEISECSKLQK-LVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      +++.....+  ...+++|++|++++|..+++ .+..+..+++|++|++++|..+++..... +..+|+|++|++++|
T Consensus       162 i~~~~l~~l--~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         162 LQKSDLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             SCHHHHHHH--HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             ccccccccc--ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            322111111  15678888888888877663 33556778889999999888877654433 356788999988877

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-14  Score=136.45  Aligned_cols=122  Identities=19%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             hcCCCCCcEEEeecCCCCcee-ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccc
Q 009754          143 MIGFRDMEYLQLSYFPHLKEI-WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE  221 (526)
Q Consensus       143 ~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~  221 (526)
                      +..+++|++|+++++. +.+. ....    ..+++|++|++++|..+++.....+...+++|++|++++|..+.+.....
T Consensus        67 ~~~c~~L~~L~L~~~~-l~~~~~~~l----~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~  141 (284)
T d2astb2          67 LSQCSKLQNLSLEGLR-LSDPIVNTL----AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  141 (284)
T ss_dssp             HTTBCCCSEEECTTCB-CCHHHHHHH----TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHhCCCcccccccccC-CCcHHHHHH----hcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchh
Confidence            3355666666666653 2211 1111    23456666666666555432112224556666666666665554321100


Q ss_pred             ccccccCCCCCCCCccceEecCCCcc-ccccccCCCccccCCCcceEeeecCCCCcc
Q 009754          222 EQNADKEHRGPLFPKLYGLRLIDLPK-LKRFCNFTGNIIELPELQHLTIQNCPDMET  277 (526)
Q Consensus       222 ~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  277 (526)
                      .       .....++|+.|++++|.. +.+.. .......+|+|++|++++|..+++
T Consensus       142 ~-------~~~~~~~L~~L~l~~~~~~i~~~~-l~~l~~~~~~L~~L~L~~~~~itd  190 (284)
T d2astb2         142 A-------VAHVSETITQLNLSGYRKNLQKSD-LSTLVRRCPNLVHLDLSDSVMLKN  190 (284)
T ss_dssp             H-------HHHSCTTCCEEECCSCGGGSCHHH-HHHHHHHCTTCSEEECTTCTTCCG
T ss_pred             h-------hcccccccchhhhccccccccccc-ccccccccccccccccccccCCCc
Confidence            0       111235566666665432 22110 000023455666666665554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.6e-12  Score=116.50  Aligned_cols=174  Identities=17%  Similarity=0.121  Sum_probs=101.6

Q ss_pred             CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (526)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  254 (526)
                      +++++|+++++ .++.+ +.+.+..+++|++|++++| .++.++.           .+.+++|+.|+++++ .+...+..
T Consensus        31 ~~l~~L~Ls~N-~i~~l-~~~~f~~l~~L~~L~L~~N-~l~~l~~-----------~~~l~~L~~L~Ls~N-~l~~~~~~   95 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTF-SLATLMPYTRLTQLNLDRA-ELTKLQV-----------DGTLPVLGTLDLSHN-QLQSLPLL   95 (266)
T ss_dssp             TTCCEEECTTS-CCSEE-EGGGGTTCTTCCEEECTTS-CCCEEEC-----------CSCCTTCCEEECCSS-CCSSCCCC
T ss_pred             cCCCEEECcCC-cCCCc-CHHHhhccccccccccccc-ccccccc-----------ccccccccccccccc-cccccccc
Confidence            56778888776 45554 3334677888888888877 5665542           245778888888775 34444333


Q ss_pred             CCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE
Q 009754          255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH  334 (526)
Q Consensus       255 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  334 (526)
                         +..+++|+.|+++++ .+...+....                                ..+.+++.|.+.++ .++.
T Consensus        96 ---~~~l~~L~~L~l~~~-~~~~~~~~~~--------------------------------~~l~~l~~L~l~~n-~l~~  138 (266)
T d1p9ag_          96 ---GQTLPALTVLDVSFN-RLTSLPLGAL--------------------------------RGLGELQELYLKGN-ELKT  138 (266)
T ss_dssp             ---TTTCTTCCEEECCSS-CCCCCCSSTT--------------------------------TTCTTCCEEECTTS-CCCC
T ss_pred             ---ccccccccccccccc-ccceeecccc--------------------------------cccccccccccccc-ccce
Confidence               557778888888774 3333322111                                12356666666653 3444


Q ss_pred             ecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754          335 LWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC  407 (526)
Q Consensus       335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  407 (526)
                      ++...+   ..+++|+.++++++ .++.++. .+..+++|++|+++++ .++.+|..  +..+++|+.|++++.
T Consensus       139 l~~~~~---~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~--~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         139 LPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKG--FFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCCCSEEECCSC
T ss_pred             eccccc---cccccchhcccccc-cccccCccccccccccceeecccC-CCcccChh--HCCCCCCCEEEecCC
Confidence            444333   45566666666665 3444443 3455666777776663 46666542  234566666666553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.7e-12  Score=118.27  Aligned_cols=175  Identities=16%  Similarity=0.131  Sum_probs=94.6

Q ss_pred             CCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCc
Q 009754           27 SSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI  105 (526)
Q Consensus        27 ~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  105 (526)
                      +++++|+|+++ .+..+|. .+.+        +++|++|+++++ .++.++..   ..+++|+.|+++++ .++..+..+
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~--------l~~L~~L~L~~N-~l~~l~~~---~~l~~L~~L~Ls~N-~l~~~~~~~   96 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLATLMP--------YTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQSLPLLG   96 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGGTT--------CTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSSCCCCT
T ss_pred             cCCCEEECcCC-cCCCcCHHHhhc--------cccccccccccc-cccccccc---cccccccccccccc-ccccccccc
Confidence            56777777773 5666654 2333        666666666654 34444322   24666666666665 244333333


Q ss_pred             ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecC
Q 009754          106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC  185 (526)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c  185 (526)
                      .                                      .+++|+.|+++++....-.....    ..+.++++|.+.++
T Consensus        97 ~--------------------------------------~l~~L~~L~l~~~~~~~~~~~~~----~~l~~l~~L~l~~n  134 (266)
T d1p9ag_          97 Q--------------------------------------TLPALTVLDVSFNRLTSLPLGAL----RGLGELQELYLKGN  134 (266)
T ss_dssp             T--------------------------------------TCTTCCEEECCSSCCCCCCSSTT----TTCTTCCEEECTTS
T ss_pred             c--------------------------------------cccccccccccccccceeecccc----cccccccccccccc
Confidence            3                                      34555555555544211111111    34566667776665


Q ss_pred             CCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcc
Q 009754          186 TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQ  265 (526)
Q Consensus       186 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~  265 (526)
                       .++.+ +...+..++.|+.+++++| +++.++..         .+..+++|++|+++++ .++.+|..   +..+++|+
T Consensus       135 -~l~~l-~~~~~~~l~~l~~l~l~~N-~l~~~~~~---------~~~~l~~L~~L~Ls~N-~L~~lp~~---~~~~~~L~  198 (266)
T d1p9ag_         135 -ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPAG---------LLNGLENLDTLLLQEN-SLYTIPKG---FFGSHLLP  198 (266)
T ss_dssp             -CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCTT---------TTTTCTTCCEEECCSS-CCCCCCTT---TTTTCCCS
T ss_pred             -cccee-ccccccccccchhcccccc-cccccCcc---------ccccccccceeecccC-CCcccChh---HCCCCCCC
Confidence             34444 3333566677777777766 44444320         3455677777777765 35665443   44667777


Q ss_pred             eEeeecCC
Q 009754          266 HLTIQNCP  273 (526)
Q Consensus       266 ~L~l~~c~  273 (526)
                      .|++++.+
T Consensus       199 ~L~L~~Np  206 (266)
T d1p9ag_         199 FAFLHGNP  206 (266)
T ss_dssp             EEECCSCC
T ss_pred             EEEecCCC
Confidence            77777643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=3.6e-12  Score=115.37  Aligned_cols=196  Identities=16%  Similarity=0.219  Sum_probs=132.8

Q ss_pred             eecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCC
Q 009754           17 TFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCP   96 (526)
Q Consensus        17 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~   96 (526)
                      ..++.++..+.+|+.|++.+| .+.+++ .+.+        +++|++|+++++. +++...   ...+++|+.++++++.
T Consensus        31 ~~d~~~~~~l~~L~~L~l~~~-~i~~l~-~l~~--------l~~L~~L~ls~n~-i~~~~~---l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          31 VTDTVTQADLDGITTLSAFGT-GVTTIE-GVQY--------LNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP   96 (227)
T ss_dssp             TTSEECHHHHHTCCEEECTTS-CCCCCT-TGGG--------CTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC
T ss_pred             cCCcCCHHHcCCcCEEECCCC-CCCcch-hHhc--------CCCCcEeecCCce-eecccc---cccccccccccccccc
Confidence            344556677889999999997 677774 4555        8899999998753 444332   3468899999998874


Q ss_pred             CccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCC
Q 009754           97 NMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNN  176 (526)
Q Consensus        97 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~  176 (526)
                       ++.++ ++..+++|+.+.++++..               .. ...+.....++.+.++++......      +...+++
T Consensus        97 -~~~i~-~l~~l~~L~~l~l~~~~~---------------~~-~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~  152 (227)
T d1h6ua2          97 -LKNVS-AIAGLQSIKTLDLTSTQI---------------TD-VTPLAGLSNLQVLYLDLNQITNIS------PLAGLTN  152 (227)
T ss_dssp             -CSCCG-GGTTCTTCCEEECTTSCC---------------CC-CGGGTTCTTCCEEECCSSCCCCCG------GGGGCTT
T ss_pred             -ccccc-cccccccccccccccccc---------------cc-cchhccccchhhhhchhhhhchhh------hhccccc
Confidence             45543 456678888888874311               01 112335677788888766521111      1134678


Q ss_pred             ccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCC
Q 009754          177 LARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG  256 (526)
Q Consensus       177 L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  256 (526)
                      |++|.+.+|. +....+   ++++++|++|++++| .+++++.           ++.+++|++|+++++ .+++++.   
T Consensus       153 L~~L~l~~n~-~~~~~~---l~~l~~L~~L~Ls~n-~l~~l~~-----------l~~l~~L~~L~Ls~N-~lt~i~~---  212 (227)
T d1h6ua2         153 LQYLSIGNAQ-VSDLTP---LANLSKLTTLKADDN-KISDISP-----------LASLPNLIEVHLKNN-QISDVSP---  212 (227)
T ss_dssp             CCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCCGG-----------GGGCTTCCEEECTTS-CCCBCGG---
T ss_pred             cccccccccc-cccchh---hcccccceecccCCC-ccCCChh-----------hcCCCCCCEEECcCC-cCCCCcc---
Confidence            8999888874 443322   778899999999888 6666653           346788999999887 5777653   


Q ss_pred             ccccCCCcceEeeec
Q 009754          257 NIIELPELQHLTIQN  271 (526)
Q Consensus       257 ~~~~~~~L~~L~l~~  271 (526)
                       +..+++|+.|++++
T Consensus       213 -l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         213 -LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GTTCTTCCEEEEEE
T ss_pred             -cccCCCCCEEEeeC
Confidence             56888899888874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=9.9e-12  Score=112.39  Aligned_cols=78  Identities=22%  Similarity=0.305  Sum_probs=37.5

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      +.+|+.|.+.+| .++++..   +..+++|++|++++| .+..+.           .+..+++|+.+.++++. +++++.
T Consensus        40 l~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~ls~n-~i~~~~-----------~l~~l~~l~~l~~~~n~-~~~i~~  102 (227)
T d1h6ua2          40 LDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDN-QITDLA-----------PLKNLTKITELELSGNP-LKNVSA  102 (227)
T ss_dssp             HHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCG-----------GGTTCCSCCEEECCSCC-CSCCGG
T ss_pred             cCCcCEEECCCC-CCCcchh---HhcCCCCcEeecCCc-eeeccc-----------ccccccccccccccccc-cccccc
Confidence            455555555555 3444322   455566666666555 233322           22345555555555542 233221


Q ss_pred             CCCccccCCCcceEeeecC
Q 009754          254 FTGNIIELPELQHLTIQNC  272 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c  272 (526)
                          +..+++|+.+.+++|
T Consensus       103 ----l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2         103 ----IAGLQSIKTLDLTST  117 (227)
T ss_dssp             ----GTTCTTCCEEECTTS
T ss_pred             ----ccccccccccccccc
Confidence                345555666655554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-11  Score=114.56  Aligned_cols=83  Identities=18%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccC
Q 009754          319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVN  398 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~  398 (526)
                      ++|+.|++.++ .++.++...+   ..+++|+.+.+.++......|..+..+++|++|+++++ .+..++.. .+..+++
T Consensus       153 ~~L~~L~l~~N-~l~~l~~~~f---~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~-~~~~~~~  226 (284)
T d1ozna_         153 GNLTHLFLHGN-RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRA  226 (284)
T ss_dssp             TTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTT
T ss_pred             cchhhcccccC-cccccchhhh---ccccccchhhhhhccccccChhHhhhhhhccccccccc-cccccccc-ccccccc
Confidence            45555555553 3444444333   45566666666655433333455566666666666663 44444442 2345566


Q ss_pred             CceEEEecc
Q 009754          399 LGRMMIADC  407 (526)
Q Consensus       399 L~~L~i~~c  407 (526)
                      |++|++++.
T Consensus       227 L~~L~l~~N  235 (284)
T d1ozna_         227 LQYLRLNDN  235 (284)
T ss_dssp             CCEEECCSS
T ss_pred             cCEEEecCC
Confidence            666666553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.7e-11  Score=111.78  Aligned_cols=211  Identities=18%  Similarity=0.195  Sum_probs=111.1

Q ss_pred             CccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhh-hhcCCCCCcEEEeecCCCCceeccCCCCCcCCCC
Q 009754           97 NMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN  175 (526)
Q Consensus        97 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~  175 (526)
                      .++.+|..+.  .++++|+++               ++.+..++. .+..+++|++|+++++. +..+....   ...+.
T Consensus        22 ~L~~iP~~ip--~~~~~L~Ls---------------~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~---~~~~~   80 (284)
T d1ozna_          22 GLQAVPVGIP--AASQRIFLH---------------GNRISHVPAASFRACRNLTILWLHSNV-LARIDAAA---FTGLA   80 (284)
T ss_dssp             CCSSCCTTCC--TTCSEEECT---------------TSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCT
T ss_pred             CCCccCCCCC--CCCCEEECc---------------CCcCCCCCHHHhhcccccccccccccc-cccccccc---ccccc
Confidence            3666665442  456777776               334444443 35566677777776654 33222211   12345


Q ss_pred             CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCC
Q 009754          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT  255 (526)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  255 (526)
                      .++++.+.....++.+.+ ..++.+++|++|++++|. +..++..         .....++|+.+++.+. .++.++.  
T Consensus        81 ~~~~l~~~~~~~~~~l~~-~~~~~l~~L~~L~l~~n~-~~~~~~~---------~~~~~~~L~~l~l~~N-~l~~i~~--  146 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCG-LQELGPG---------LFRGLAALQYLYLQDN-ALQALPD--  146 (284)
T ss_dssp             TCCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCT--
T ss_pred             cccccccccccccccccc-hhhcccccCCEEecCCcc-ccccccc---------ccchhcccchhhhccc-cccccCh--
Confidence            666666555555555432 235666677777776663 2222210         3344566666666663 3444421  


Q ss_pred             CccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEe
Q 009754          256 GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHL  335 (526)
Q Consensus       256 ~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  335 (526)
                      +.+..+++|++|+++++ +++.+++..+                                .++++|+.+.+.++ .++.+
T Consensus       147 ~~f~~~~~L~~L~l~~N-~l~~l~~~~f--------------------------------~~l~~L~~l~l~~N-~l~~i  192 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGN-RISSVPERAF--------------------------------RGLHSLDRLLLHQN-RVAHV  192 (284)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCEECTTTT--------------------------------TTCTTCCEEECCSS-CCCEE
T ss_pred             hHhccccchhhcccccC-cccccchhhh--------------------------------ccccccchhhhhhc-ccccc
Confidence            12445666666666664 4554443322                                13366777777664 34444


Q ss_pred             cccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeecc
Q 009754          336 WKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSK  380 (526)
Q Consensus       336 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~  380 (526)
                      ....+   ..+++|+.|+++++. +..++ ..+..+++|++|++++
T Consensus       193 ~~~~f---~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         193 HPHAF---RDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CTTTT---TTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCS
T ss_pred             ChhHh---hhhhhcccccccccc-cccccccccccccccCEEEecC
Confidence            43333   566677777776654 33333 3455666677777766

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.9e-11  Score=107.78  Aligned_cols=190  Identities=15%  Similarity=0.082  Sum_probs=104.9

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      .+++++|+++++ .++.+ +...+.++++|++|++++|.....++..         .+..+++++.+.+..+..+..++.
T Consensus        28 ~~~l~~L~Ls~n-~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~---------~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          28 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEAD---------VFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             CSCCSEEEEESC-CCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSS---------SEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCCEEECcCC-cCCcc-ChhHhhccchhhhhhhccccccceeecc---------cccccccccccccccccccccccc
Confidence            357888888877 45555 3333677888888888887544433210         334567778887776666655432


Q ss_pred             CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  333 (526)
                        +.+..+++|+++++.++ ++...++...                               ...++.++.+...+ ..+.
T Consensus        97 --~~~~~l~~L~~l~l~~~-~l~~~~~~~~-------------------------------~~~l~~l~~~~~~n-~~l~  141 (242)
T d1xwdc1          97 --EAFQNLPNLQYLLISNT-GIKHLPDVHK-------------------------------IHSLQKVLLDIQDN-INIH  141 (242)
T ss_dssp             --TSEECCTTCCEEEEESC-CCCSCCCCTT-------------------------------TCBSSCEEEEEESC-TTCC
T ss_pred             --ccccccccccccccchh-hhcccccccc-------------------------------cccccccccccccc-cccc
Confidence              22567888888888875 4443321100                               00112232222222 3455


Q ss_pred             EecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCccee
Q 009754          334 HLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQI  413 (526)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~  413 (526)
                      .++...+.  +....++.|++.++ .++.++......++++++....++.++.++... ..++++|++|+++++ +++.+
T Consensus       142 ~i~~~~~~--~~~~~l~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~-f~~l~~L~~L~Ls~N-~l~~l  216 (242)
T d1xwdc1         142 TIERNSFV--GLSFESVILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSL  216 (242)
T ss_dssp             EECTTSST--TSBSSCEEEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTT-TTTSCCCSEEECTTS-CCCCC
T ss_pred             cccccccc--cccccceeeecccc-cccccccccccchhhhccccccccccccccHHH-hcCCCCCCEEECCCC-cCCcc
Confidence            55444331  22245666666553 455665555555666666555555666665532 355667777777664 35444


Q ss_pred             e
Q 009754          414 I  414 (526)
Q Consensus       414 ~  414 (526)
                      +
T Consensus       217 ~  217 (242)
T d1xwdc1         217 P  217 (242)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=5.1e-11  Score=106.11  Aligned_cols=165  Identities=19%  Similarity=0.290  Sum_probs=92.3

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      +.+|++|++.+| .++.+.+   ++.+++|++|++++| .+++++.           .+.+++|+.|+++++ .+++++.
T Consensus        45 L~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~L~~n-~i~~l~~-----------~~~l~~L~~L~l~~n-~i~~l~~  107 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-----------LANLKNLGWLFLDEN-KVKDLSS  107 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-----------GTTCTTCCEEECCSS-CCCCGGG
T ss_pred             hcCccEEECcCC-CCCCchh---HhhCCCCCEEeCCCc-cccCccc-----------cccCccccccccccc-ccccccc
Confidence            456666666665 3444422   566777777777766 4444432           234667777777664 3454432


Q ss_pred             CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  333 (526)
                          +..+++|+.|+++++. +...+  .                                ...++.++.+++.++ .++
T Consensus       108 ----l~~l~~L~~L~l~~~~-~~~~~--~--------------------------------l~~l~~l~~l~~~~n-~l~  147 (210)
T d1h6ta2         108 ----LKDLKKLKSLSLEHNG-ISDIN--G--------------------------------LVHLPQLESLYLGNN-KIT  147 (210)
T ss_dssp             ----GTTCTTCCEEECTTSC-CCCCG--G--------------------------------GGGCTTCCEEECCSS-CCC
T ss_pred             ----cccccccccccccccc-ccccc--c--------------------------------ccccccccccccccc-ccc
Confidence                4456677777776643 22111  0                                012356666666553 233


Q ss_pred             EecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEec
Q 009754          334 HLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD  406 (526)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  406 (526)
                      +... .    ..+++|+.++++++ .+++++ .+..+++|++|+++++ .+++++.   +.++++|++|++++
T Consensus       148 ~~~~-~----~~l~~L~~l~l~~n-~l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         148 DITV-L----SRLTKLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFS  209 (210)
T ss_dssp             CCGG-G----GGCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEE
T ss_pred             cccc-c----cccccccccccccc-cccccc-cccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEccC
Confidence            3221 1    55667777777765 345553 2566677777777775 5666542   35677777777753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=1.5e-11  Score=109.64  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccc
Q 009754          143 MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE  222 (526)
Q Consensus       143 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  222 (526)
                      +..+++|+.|+++++.. ..+. ..    ..+++++.+.++++. +++...   ...+++|+++++++| .+++++.   
T Consensus       108 l~~l~~L~~L~l~~~~~-~~~~-~l----~~l~~l~~l~~~~n~-l~~~~~---~~~l~~L~~l~l~~n-~l~~i~~---  173 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGI-SDIN-GL----VHLPQLESLYLGNNK-ITDITV---LSRLTKLDTLSLEDN-QISDIVP---  173 (210)
T ss_dssp             GTTCTTCCEEECTTSCC-CCCG-GG----GGCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECCSS-CCCCCGG---
T ss_pred             ccccccccccccccccc-cccc-cc----ccccccccccccccc-cccccc---ccccccccccccccc-ccccccc---
Confidence            34556666666666542 2111 11    345677777776663 333222   567777888888777 4554432   


Q ss_pred             cccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754          223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN  271 (526)
Q Consensus       223 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  271 (526)
                              +..+++|+.|+++++ .+++++.    +..+++|++|++++
T Consensus       174 --------l~~l~~L~~L~Ls~N-~i~~l~~----l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 --------LAGLTKLQNLYLSKN-HISDLRA----LAGLKNLDVLELFS  209 (210)
T ss_dssp             --------GTTCTTCCEEECCSS-CCCBCGG----GTTCTTCSEEEEEE
T ss_pred             --------ccCCCCCCEEECCCC-CCCCChh----hcCCCCCCEEEccC
Confidence                    345777888888776 4565542    55778888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=3.2e-11  Score=106.47  Aligned_cols=97  Identities=21%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             cCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccccc
Q 009754          144 IGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQ  223 (526)
Q Consensus       144 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  223 (526)
                      ..+++|+.|+++++......+.      ..+++|+.|++++|. +..+ +.  +..+++|++|++.+| .++.++     
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~~~------~~l~~L~~L~l~~n~-l~~~-~~--l~~~~~L~~L~l~~n-~l~~l~-----  166 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDIDPL------KNLTNLNRLELSSNT-ISDI-SA--LSGLTSLQQLNFSSN-QVTDLK-----  166 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCGGG------TTCTTCSEEECCSSC-CCCC-GG--GTTCTTCSEEECCSS-CCCCCG-----
T ss_pred             cccccccccccccccccccccc------chhhhhHHhhhhhhh-hccc-cc--ccccccccccccccc-cccCCc-----
Confidence            3556666666665543221111      335677777776663 3332 22  566777777777766 444443     


Q ss_pred             ccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceE
Q 009754          224 NADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHL  267 (526)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  267 (526)
                            .++.+++|+.|+++++ .+++++.    +..+++|++|
T Consensus       167 ------~l~~l~~L~~L~ls~N-~i~~i~~----l~~L~~L~~L  199 (199)
T d2omxa2         167 ------PLANLTTLERLDISSN-KVSDISV----LAKLTNLESL  199 (199)
T ss_dssp             ------GGTTCTTCCEEECCSS-CCCCCGG----GGGCTTCSEE
T ss_pred             ------cccCCCCCCEEECCCC-CCCCCcc----ccCCCCCCcC
Confidence                  2345677777777775 3555432    4456666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.5e-10  Score=102.13  Aligned_cols=161  Identities=20%  Similarity=0.261  Sum_probs=80.2

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN  253 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  253 (526)
                      +.++++|++.++ .++++..   ++.+++|++|++++| .++.++.           ++.+++|+.|+++++. +..++.
T Consensus        39 l~~l~~L~l~~~-~i~~l~~---l~~l~nL~~L~Ls~N-~l~~~~~-----------l~~l~~L~~L~l~~n~-~~~~~~  101 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSIDG---VEYLNNLTQINFSNN-QLTDITP-----------LKNLTKLVDILMNNNQ-IADITP  101 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-----------GTTCTTCCEEECCSSC-CCCCGG
T ss_pred             hcCCCEEECCCC-CCCCccc---cccCCCcCcCccccc-cccCccc-----------ccCCcccccccccccc-cccccc
Confidence            455666666555 3333322   556666666666665 4444432           2345666666666543 232221


Q ss_pred             CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754          254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ  333 (526)
Q Consensus       254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  333 (526)
                          +..+++|+.|++++|... ...                                  ....+++|+.|+++++. +.
T Consensus       102 ----l~~l~~L~~L~l~~~~~~-~~~----------------------------------~~~~l~~L~~L~l~~n~-l~  141 (199)
T d2omxa2         102 ----LANLTNLTGLTLFNNQIT-DID----------------------------------PLKNLTNLNRLELSSNT-IS  141 (199)
T ss_dssp             ----GTTCTTCSEEECCSSCCC-CCG----------------------------------GGTTCTTCSEEECCSSC-CC
T ss_pred             ----cccccccccccccccccc-ccc----------------------------------ccchhhhhHHhhhhhhh-hc
Confidence                445666666666654311 110                                  01123566666665542 33


Q ss_pred             EecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceE
Q 009754          334 HLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRM  402 (526)
Q Consensus       334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L  402 (526)
                      .++ .    ...+++|+.|++.+| .+++++ .+..+++|++|+++++ .+++++.   +..+++|++|
T Consensus       142 ~~~-~----l~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L~~L  199 (199)
T d2omxa2         142 DIS-A----LSGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDISV---LAKLTNLESL  199 (199)
T ss_dssp             CCG-G----GTTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred             ccc-c----ccccccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCcc---ccCCCCCCcC
Confidence            221 1    144566666666654 344443 3455666666666665 4555532   2455555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4e-10  Score=102.54  Aligned_cols=65  Identities=25%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754          143 MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       143 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (526)
                      +.++++|++|+++++.....+....   ...+++++++.+.++.++.... ...+..+++|++++++++
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~---f~~l~~l~~l~~~~~n~l~~~~-~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSS---EESCTTCCEEEEECCTTCCEEC-TTSEECCTTCCEEEEESC
T ss_pred             hhccchhhhhhhccccccceeeccc---cccccccccccccccccccccc-cccccccccccccccchh
Confidence            3445566666665554322211111   0234555666555554444432 222455666666666555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.1e-09  Score=89.82  Aligned_cols=109  Identities=18%  Similarity=0.254  Sum_probs=70.7

Q ss_pred             CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754          145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN  224 (526)
Q Consensus       145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  224 (526)
                      .+++|+.|+++++. ++.+. +.    ..+++|++|++++|. ++.+ +...+..+++|++|++++| .+..++++.   
T Consensus        39 ~l~~L~~L~Ls~N~-i~~l~-~~----~~l~~L~~L~ls~N~-i~~l-~~~~~~~l~~L~~L~L~~N-~i~~~~~l~---  106 (162)
T d1a9na_          39 TLDQFDAIDFSDNE-IRKLD-GF----PLLRRLKTLLVNNNR-ICRI-GEGLDQALPDLTELILTNN-SLVELGDLD---  106 (162)
T ss_dssp             GTTCCSEEECCSSC-CCEEC-CC----CCCSSCCEEECCSSC-CCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGG---
T ss_pred             ccccCCEEECCCCC-CCccC-Cc----ccCcchhhhhccccc-ccCC-Cccccccccccccceeccc-ccccccccc---
Confidence            45666777777664 44432 12    457888888888884 5555 3344678899999999888 566655433   


Q ss_pred             cccCCCCCCCCccceEecCCCccccccccCC-CccccCCCcceEeeec
Q 009754          225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT-GNIIELPELQHLTIQN  271 (526)
Q Consensus       225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~  271 (526)
                           .+..+++|++|.+++++ +...+... ..+..+|+|+.|+-..
T Consensus       107 -----~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_         107 -----PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             -----GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             -----ccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCC
Confidence                 45678899999998874 34333210 1256788888887443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.4e-08  Score=81.43  Aligned_cols=37  Identities=14%  Similarity=0.188  Sum_probs=17.1

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (526)
                      +++|++|+++++ .++.++....+..+++|++|++++|
T Consensus        64 l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          64 LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             ccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCC
Confidence            445555555554 2333322222455555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=8.5e-08  Score=76.69  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=14.3

Q ss_pred             CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754          174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (526)
                      +++|++|+++++ .++.+++ . ++.+++|++|++++|
T Consensus        19 l~~L~~L~ls~N-~l~~lp~-~-~~~l~~L~~L~l~~N   53 (124)
T d1dcea3          19 LLLVTHLDLSHN-RLRALPP-A-LAALRCLEVLQASDN   53 (124)
T ss_dssp             GTTCCEEECCSS-CCCCCCG-G-GGGCTTCCEEECCSS
T ss_pred             CCCCCEEECCCC-ccCcchh-h-hhhhhcccccccccc
Confidence            344444444444 2333321 1 344444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.9e-08  Score=84.83  Aligned_cols=63  Identities=16%  Similarity=0.174  Sum_probs=33.6

Q ss_pred             cCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754          144 IGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC  211 (526)
Q Consensus       144 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~  211 (526)
                      ..+++|++|+++++. ++.+....   ...+++|++|++++| .++++.....+..+++|++|++++|
T Consensus        60 ~~l~~L~~L~ls~N~-i~~l~~~~---~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          60 PLLRRLKTLLVNNNR-ICRIGEGL---DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCCSSCCEEECCSSC-CCEECSCH---HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ccCcchhhhhccccc-ccCCCccc---cccccccccceeccc-cccccccccccccccccchhhcCCC
Confidence            345566666666654 33322111   023566777777666 3333322223566777777777776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.47  E-value=3.1e-07  Score=79.62  Aligned_cols=93  Identities=17%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754          175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF  254 (526)
Q Consensus       175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  254 (526)
                      +++++|+++++. ++...+...+..+++|++|+++++. +..++..         ....+++|+.|+++++ .++.++..
T Consensus        29 ~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~---------~~~~~~~L~~L~Ls~N-~l~~l~~~   96 (192)
T d1w8aa_          29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN---------AFEGASHIQELQLGEN-KIKEISNK   96 (192)
T ss_dssp             TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT---------TTTTCTTCCEEECCSC-CCCEECSS
T ss_pred             CCCCEEEeCCCC-CcccccccccCCCceEeeeeccccc-ccccccc---------ccccccccceeeeccc-cccccCHH
Confidence            567777777663 3322233336677777777777663 3333210         4455677777777765 45555322


Q ss_pred             CCccccCCCcceEeeecCCCCccccCcc
Q 009754          255 TGNIIELPELQHLTIQNCPDMETFISNS  282 (526)
Q Consensus       255 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~  282 (526)
                        .+..+++|++|++++ .+++.+++..
T Consensus        97 --~F~~l~~L~~L~L~~-N~l~~i~~~~  121 (192)
T d1w8aa_          97 --MFLGLHQLKTLNLYD-NQISCVMPGS  121 (192)
T ss_dssp             --SSTTCTTCCEEECCS-SCCCEECTTS
T ss_pred             --HHhCCCcccccccCC-ccccccCHHH
Confidence              255677777777777 3566555433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.46  E-value=8.8e-10  Score=96.70  Aligned_cols=117  Identities=19%  Similarity=0.246  Sum_probs=64.8

Q ss_pred             CCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCC
Q 009754           96 PNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN  175 (526)
Q Consensus        96 ~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~  175 (526)
                      +.++.++..+..+++|++|++++               +.+.++. .+..+++|+.|+++++. ++.+....    ..++
T Consensus        35 ~~i~~l~~sl~~L~~L~~L~Ls~---------------n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~----~~~~   93 (198)
T d1m9la_          35 PPIEKMDATLSTLKACKHLALST---------------NNIEKIS-SLSGMENLRILSLGRNL-IKKIENLD----AVAD   93 (198)
T ss_dssp             TTCCCCHHHHHHTTTCCEEECSE---------------EEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHH----HHHH
T ss_pred             CchhhhhhHHhcccccceeECcc---------------cCCCCcc-cccCCccccChhhcccc-cccccccc----cccc
Confidence            33444444445556666666652               2222332 23455677777777654 33221111    2245


Q ss_pred             CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754          176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP  246 (526)
Q Consensus       176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  246 (526)
                      +|++|++++| .++.+ +.  +..+++|++|++++| .++.++++.        .+..+++|+.|.+++++
T Consensus        94 ~L~~L~l~~N-~i~~l-~~--~~~l~~L~~L~L~~N-~i~~~~~~~--------~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          94 TLEELWISYN-QIASL-SG--IEKLVNLRVLYMSNN-KITNWGEID--------KLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HCCEEECSEE-ECCCH-HH--HHHHHHSSEEEESEE-ECCCHHHHH--------HHTTTTTCSEEEECSSH
T ss_pred             cccccccccc-ccccc-cc--ccccccccccccccc-hhccccccc--------cccCCCccceeecCCCc
Confidence            6777777776 44443 21  667778888888777 455544322        34567788888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.44  E-value=7.9e-07  Score=76.97  Aligned_cols=120  Identities=11%  Similarity=0.056  Sum_probs=69.2

Q ss_pred             CccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccc
Q 009754          359 KLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYC  438 (526)
Q Consensus       359 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  438 (526)
                      .++.+|..+.  +++++|++++. .++.......+..+++|+.|+++++ .+..+..   +    ....+++|++|++++
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~---~----~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEP---N----AFEGASHIQELQLGE   87 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCT---T----TTTTCTTCCEEECCS
T ss_pred             CcCccCCCCC--CCCCEEEeCCC-CCcccccccccCCCceEeeeecccc-ccccccc---c----ccccccccceeeecc
Confidence            4556665442  56677777763 4443222223456677777777664 2333322   1    113456777777776


Q ss_pred             ccccceecCCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEeeccCCC
Q 009754          439 LPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEKD  492 (526)
Q Consensus       439 c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~~  492 (526)
                      + .++.++.+... .+++|++|++++ .+++.+|.. +..+++|+++++.++.+.
T Consensus        88 N-~l~~l~~~~F~-~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 N-KIKEISNKMFL-GLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C-CCCEECSSSST-TCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             c-cccccCHHHHh-CCCcccccccCC-ccccccCHHHhcCCcccccccccccccc
Confidence            5 56666665433 477777777776 356666543 456777777777666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.7e-08  Score=100.31  Aligned_cols=162  Identities=16%  Similarity=0.032  Sum_probs=88.2

Q ss_pred             CCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccc-----cCCC-CCCCCCCCEEeeccccCccccccc
Q 009754          317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQK-----LVPP-SWHLENLEALEVSKCHGLINLLTF  390 (526)
Q Consensus       317 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~-~~~l~~L~~L~l~~c~~l~~l~~~  390 (526)
                      ....++.++++++.................+.++.+++++++ +++     +... ....+.|+.+++++|. +.+....
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~  330 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS  330 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-ccccccchhhccccccccccccccccccc-hhhhhhh
Confidence            346888888887642211111111122556788888888764 221     1111 1234578999999874 4433222


Q ss_pred             h---hhhhccCCceEEEecccCcceeeccCCccccccc-ccccccceeeccccccccee-----cCCCccCCCCCccEEE
Q 009754          391 S---TSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDC-NVFKELRYLELYCLPSLTSF-----CLGNYALEFPSLKQVV  461 (526)
Q Consensus       391 ~---~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~  461 (526)
                      .   +....++|++|+++++ .+++...   ..-.... ...+.|++|++++| .+++.     .....  .+++|++|+
T Consensus       331 ~l~~~~~~~~~L~~L~Ls~N-~i~~~g~---~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~--~~~~L~~L~  403 (460)
T d1z7xw1         331 HFSSVLAQNRFLLELQISNN-RLEDAGV---RELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLL--ANHSLRELD  403 (460)
T ss_dssp             HHHHHHHHCSSCCEEECCSS-BCHHHHH---HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHH--HCCCCCEEE
T ss_pred             hcccccccccchhhhheeee-cccCccc---chhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHh--cCCCCCEEE
Confidence            1   2345578999999886 4543211   0000000 12467999999998 56542     22222  278999999


Q ss_pred             EcCCCCcee-----ccCCCC-CCCCcceEEeec
Q 009754          462 VRQCPKMKI-----FSQGVL-DTPMLNKVNVTE  488 (526)
Q Consensus       462 l~~C~~l~~-----lp~~~~-~~~~L~~l~l~~  488 (526)
                      ++++ .++.     +...+. ....|+.+.+..
T Consensus       404 Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~  435 (460)
T d1z7xw1         404 LSNN-CLGDAGILQLVESVRQPGCLLEQLVLYD  435 (460)
T ss_dssp             CCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             CCCC-cCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence            9875 4432     211111 234688888843

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.1e-08  Score=99.58  Aligned_cols=388  Identities=14%  Similarity=0.048  Sum_probs=185.2

Q ss_pred             cceeEEeeccCceeec--ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCc-
Q 009754            4 LLFYFFNIHTHAHTFA--YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY-   80 (526)
Q Consensus         4 ~~l~~l~~~~~~~~~~--~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-   80 (526)
                      ++|+.||+++......  ..-+..++++++|+|++| .+.....   ..+.......++|++|+++++ .+++...... 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~---~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~   76 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARC---KDISSALRVNPALAELNLRSN-ELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHH---HHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHH---HHHHHHHhcCCCCCEEECcCC-cCChHHHHHHH
Confidence            3678888875544322  223566889999999998 4542110   001112224788999999875 3443221111 


Q ss_pred             ---eecCCCccEEEecCCCCccc-----cccCcccCCCeeeEEecccccc------------------cceeeeccc-cc
Q 009754           81 ---TLEFPSLERVSMTHCPNMKT-----FSHGILSTPKLHKVQVTEKEEG------------------ELHHWEGNK-LN  133 (526)
Q Consensus        81 ---~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~~~~~------------------~~~~~~~~~-~~  133 (526)
                         .....+|+.|++++|. ++.     ++..+...++|++|++++..-.                  ......... ..
T Consensus        77 ~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  155 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  155 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccch
Confidence               1123579999999985 543     3334456788999998853210                  000000000 00


Q ss_pred             hhhHHhhhhhcCCCCCcEEEeecCCCCcee--ccCCCCCcCCCCCccEEEEecCCCcccCC--ChHHHhcCCCCCeeeec
Q 009754          134 STIQKCYEEMIGFRDMEYLQLSYFPHLKEI--WHGQALPVSFFNNLARLVVDDCTNMSSAI--PANLLRCLNNLQWLEVR  209 (526)
Q Consensus       134 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~l~~l~~L~~L~l~  209 (526)
                      .....+...+.....++.+.++++......  .....+. ..-.....+.+..+.......  ....+...+.++.+++.
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  234 (460)
T d1z7xw1         156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK-DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  234 (460)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH-HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             hhhcccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhcccccccccccccccchh
Confidence            111222233334566666666654421100  0000000 111334455555543221100  01124566777777777


Q ss_pred             cccccchhc--cccccccccCCCCCCCCccceEecCCCccccccc-cCCCccccCCCcceEeeecCCCCccccCccccee
Q 009754          210 NCDSIEEVL--HLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQHLTIQNCPDMETFISNSVVHV  286 (526)
Q Consensus       210 ~~~~l~~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L  286 (526)
                      ++.......  ...+       .......++.++++++..-.... .........+.++.++++++ .+.+.....+   
T Consensus       235 ~n~~~~~~~~~~~~~-------~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n-~i~~~~~~~l---  303 (460)
T d1z7xw1         235 SNKLGDVGMAELCPG-------LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLL---  303 (460)
T ss_dssp             SSBCHHHHHHHHHHH-------HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHH---
T ss_pred             hccccccccchhhcc-------cccccccccccccccccccccccccccccccccccccccccccc-cccccccchh---
Confidence            664222110  0000       22335667777777653211110 00001234566666666663 3332111000   


Q ss_pred             eecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCCh-hhhhhcccceeEeccCcCccc---
Q 009754          287 TTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE-SNKAFANLESLEISECSKLQK---  362 (526)
Q Consensus       287 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~---  362 (526)
                                   ....           ....+.|+.+.++++. +.......+. .....++|++|++++++ +++   
T Consensus       304 -------------~~~l-----------~~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~  357 (460)
T d1z7xw1         304 -------------CETL-----------LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGV  357 (460)
T ss_dssp             -------------HHHH-----------TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHH
T ss_pred             -------------hccc-----------cccccccccccccccc-hhhhhhhhcccccccccchhhhheeeec-ccCccc
Confidence                         0000           0122578888888763 3222111111 11455688999998874 432   


Q ss_pred             --cCCCCC-CCCCCCEEeeccccCccccccch---hhhhccCCceEEEecccCcceeeccCCccccccc-ccccccceee
Q 009754          363 --LVPPSW-HLENLEALEVSKCHGLINLLTFS---TSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDC-NVFKELRYLE  435 (526)
Q Consensus       363 --l~~~~~-~l~~L~~L~l~~c~~l~~l~~~~---~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~  435 (526)
                        +...+. ..+.|++|++++| .+++....+   .+..+++|++|+++++ .+++....   .-...+ .....|+.|.
T Consensus       358 ~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~---~l~~~l~~~~~~L~~l~  432 (460)
T d1z7xw1         358 RELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGIL---QLVESVRQPGCLLEQLV  432 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHH---HHHHHHTSTTCCCCEEE
T ss_pred             chhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHH---HHHHHHHhCCCccCEEE
Confidence              222232 3467899999987 566533222   2345688999999876 45432110   000000 1224688888


Q ss_pred             ccccc
Q 009754          436 LYCLP  440 (526)
Q Consensus       436 l~~c~  440 (526)
                      +.++.
T Consensus       433 l~~~~  437 (460)
T d1z7xw1         433 LYDIY  437 (460)
T ss_dssp             CTTCC
T ss_pred             CCCCC
Confidence            88764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.11  E-value=4.8e-08  Score=85.28  Aligned_cols=148  Identities=16%  Similarity=0.189  Sum_probs=91.9

Q ss_pred             CCccEEEecC-CCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754          319 PRLRWLELSG-LHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLV  397 (526)
Q Consensus       319 ~~L~~L~l~~-~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~  397 (526)
                      ...+.+++.+ .+.++.++...    ..+++|+.|+++++ .++.++ .+..+++|++|+++++ .+++++.  ....++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl----~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~--~~~~~~   93 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATL----STLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIEN--LDAVAD   93 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHH----HHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSS--HHHHHH
T ss_pred             cccceeeeecccCchhhhhhHH----hcccccceeECccc-CCCCcc-cccCCccccChhhccc-ccccccc--cccccc
Confidence            3455555554 23344333222    77888999999876 477774 5777888999999885 5677654  334567


Q ss_pred             CCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC---
Q 009754          398 NLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG---  474 (526)
Q Consensus       398 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~---  474 (526)
                      +|++|+++++ .++.+..         ...+++|+.|+++++ .+++++.-..-..+++|++|++.+++-....+..   
T Consensus        94 ~L~~L~l~~N-~i~~l~~---------~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  162 (198)
T d1m9la_          94 TLEELWISYN-QIASLSG---------IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT  162 (198)
T ss_dssp             HCCEEECSEE-ECCCHHH---------HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTH
T ss_pred             cccccccccc-ccccccc---------ccccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccch
Confidence            8999998876 4555422         134788999999886 4555542100113889999999886433222221   


Q ss_pred             -------CCCCCCcceEEe
Q 009754          475 -------VLDTPMLNKVNV  486 (526)
Q Consensus       475 -------~~~~~~L~~l~l  486 (526)
                             +..+|+|+.|+-
T Consensus       163 ~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         163 SEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHHHHHHHHCSSCCEESS
T ss_pred             hhHHHHHHHHCCCcCEeCC
Confidence                   124677777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.1e-06  Score=68.93  Aligned_cols=37  Identities=14%  Similarity=0.210  Sum_probs=15.0

Q ss_pred             ccccceeeeccccccccccccCceecCCCccEEEecCC
Q 009754           58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHC   95 (526)
Q Consensus        58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c   95 (526)
                      +++|++|++.+.+.++.+.... ...+++|+.|+++++
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS   66 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS
T ss_pred             ccccCeeecCCCccccccCchh-hccccccCcceeecc
Confidence            3444444444333343333322 112444444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.6e-05  Score=65.76  Aligned_cols=102  Identities=10%  Similarity=0.106  Sum_probs=78.9

Q ss_pred             eeEEeeccCceeecccccCCcCCCceEEecccccccEeccc-cccccccccccccccceeeeccccccccccccCceecC
Q 009754            6 FYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRH-VGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEF   84 (526)
Q Consensus         6 l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   84 (526)
                      ...++++....+..+..+..+++|++|++++.+.++.++.. +.+        +++|+.|++++. .++.+.... ...+
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~--------l~~L~~L~Ls~N-~l~~i~~~~-f~~l   79 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRG--------LGELRNLTIVKS-GLRFVAPDA-FHFT   79 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCS--------CCCCSEEECCSS-CCCEECTTG-GGSC
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhcc--------ccccCcceeecc-ccCCccccc-cccc
Confidence            34566666666666677888999999999987789999764 444        899999999975 577776654 3468


Q ss_pred             CCccEEEecCCCCccccccCcccCCCeeeEEecc
Q 009754           85 PSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTE  118 (526)
Q Consensus        85 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~  118 (526)
                      ++|+.|+++++ .++.+|.+.....+|++|++++
T Consensus        80 ~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          80 PRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             SCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCS
T ss_pred             ccccceeccCC-CCcccChhhhccccccccccCC
Confidence            99999999998 5788887777666788887773

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.90  E-value=8e-07  Score=84.65  Aligned_cols=13  Identities=8%  Similarity=0.041  Sum_probs=6.5

Q ss_pred             cCCCCCeeeeccc
Q 009754          199 CLNNLQWLEVRNC  211 (526)
Q Consensus       199 ~l~~L~~L~l~~~  211 (526)
                      .+++|++|++++|
T Consensus        91 ~~~~L~~L~L~~n  103 (344)
T d2ca6a1          91 KCPKLHTVRLSDN  103 (344)
T ss_dssp             TCTTCCEEECCSC
T ss_pred             hCCCccccccccc
Confidence            3445555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.82  E-value=2.1e-06  Score=81.65  Aligned_cols=37  Identities=8%  Similarity=0.075  Sum_probs=20.3

Q ss_pred             CCCccEEEEcCCCCcee-----ccCCCC-CCCCcceEEeeccCC
Q 009754          454 FPSLKQVVVRQCPKMKI-----FSQGVL-DTPMLNKVNVTEEEK  491 (526)
Q Consensus       454 ~~~L~~L~l~~C~~l~~-----lp~~~~-~~~~L~~l~l~~~~~  491 (526)
                      .+.|++|+++++. ++.     +...+. ..++|+.|+++++..
T Consensus       272 ~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         272 NIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             SCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            4567777776653 432     222221 356788888855554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.00057  Score=56.43  Aligned_cols=14  Identities=21%  Similarity=0.164  Sum_probs=8.7

Q ss_pred             CCCCCcEEEeecCC
Q 009754          145 GFRDMEYLQLSYFP  158 (526)
Q Consensus       145 ~~~~L~~L~l~~~~  158 (526)
                      .+++|++|+++++.
T Consensus        63 ~~~~L~~L~Ls~N~   76 (162)
T d1koha1          63 NIPELLSLNLSNNR   76 (162)
T ss_dssp             HCTTCCCCCCCSSC
T ss_pred             hCCCCCEeeCCCcc
Confidence            45666666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0012  Score=54.46  Aligned_cols=85  Identities=16%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             CCCCccEEEEecCCCcccCCC-hHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754          173 FFNNLARLVVDDCTNMSSAIP-ANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF  251 (526)
Q Consensus       173 ~l~~L~~L~l~~c~~l~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  251 (526)
                      .+++|++|++++| +++.+.+ ...+..+++|+.|++++| .+++++++.        .. ...+|+.|.+.+++--...
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~--------~l-~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD--------KI-KGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHH--------HH-TTCCCSSCCCTTSTTSSSS
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhh--------hh-hccccceeecCCCCcCcCc
Confidence            4688999999988 4555432 334678999999999988 666665432        22 2356888888886532221


Q ss_pred             ccC----CCccccCCCcceEe
Q 009754          252 CNF----TGNIIELPELQHLT  268 (526)
Q Consensus       252 ~~~----~~~~~~~~~L~~L~  268 (526)
                      ...    ...+..+|+|+.|+
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET
T ss_pred             ccchhHHHHHHHHCCCCCEEC
Confidence            100    01144678888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.87  E-value=0.061  Score=43.78  Aligned_cols=11  Identities=9%  Similarity=0.018  Sum_probs=4.9

Q ss_pred             cCCCCCeeeec
Q 009754          199 CLNNLQWLEVR  209 (526)
Q Consensus       199 ~l~~L~~L~l~  209 (526)
                      ..+.|+.|+++
T Consensus       129 ~n~sL~~l~l~  139 (167)
T d1pgva_         129 ENESLLRVGIS  139 (167)
T ss_dssp             HCSSCCEEECC
T ss_pred             hCCCccEeeCc
Confidence            34444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.58  E-value=0.023  Score=46.54  Aligned_cols=61  Identities=8%  Similarity=0.061  Sum_probs=31.1

Q ss_pred             CCccEEEecCCCCceEecccCCh-hhhhhcccceeEeccCcCccc-----cCCCCCCCCCCCEEeeccc
Q 009754          319 PRLRWLELSGLHKVQHLWKENDE-SNKAFANLESLEISECSKLQK-----LVPPSWHLENLEALEVSKC  381 (526)
Q Consensus       319 ~~L~~L~l~~~~~l~~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c  381 (526)
                      +.|++|+++++. +.+-....+. .....++|++|++++|. +++     +...+...++|++|+++++
T Consensus        44 ~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          44 KHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             SCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             Cccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            567777777652 3322111111 12445667777777663 321     2233445566777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.50  E-value=0.033  Score=45.37  Aligned_cols=62  Identities=18%  Similarity=0.055  Sum_probs=27.6

Q ss_pred             hhcccceeEeccCcC----ccccCCCCCCCCCCCEEeecccc-Cccccccchh---hhhccCCceEEEec
Q 009754          345 AFANLESLEISECSK----LQKLVPPSWHLENLEALEVSKCH-GLINLLTFST---SESLVNLGRMMIAD  406 (526)
Q Consensus       345 ~l~~L~~L~l~~c~~----l~~l~~~~~~l~~L~~L~l~~c~-~l~~l~~~~~---~~~l~~L~~L~i~~  406 (526)
                      ..++++.+++.+|..    ...+...+...++|+.+++..+. .+++-....+   +...++|+.|++..
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            334555555554431    11222334445666666665432 3333221111   23456666666643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.93  E-value=0.12  Score=41.73  Aligned_cols=15  Identities=13%  Similarity=-0.095  Sum_probs=8.1

Q ss_pred             HhcCCCCCeeeeccc
Q 009754          197 LRCLNNLQWLEVRNC  211 (526)
Q Consensus       197 l~~l~~L~~L~l~~~  211 (526)
                      +...++|++|++..+
T Consensus       128 L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         128 LEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHCSSCCEEECCCS
T ss_pred             HHhCCCcCEEeCcCC
Confidence            345556666665443