Citrus Sinensis ID: 009765

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
MMTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHccccccccccHHHHHHHHHccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccEEEEEcccccccHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccEEEEEEEcccHHHHHHHHHHHcccccEEcccccccccEEEEEccccccccccEEEEccccEEEEEEEccccccccccccEEccccccccEEEEEEEEccccccccccccEEEEEEEEccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccHHHHHccccccccEEEEccccHHHHHHHHHHHcccccccccccEEcccHHHHHHHHccccEEEEcccccc
ccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHHcccEEEHHHHHHHHHHHHccccccccccEccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHHccccEEcccccccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccEEcEEEEEccEEEEEEEEcccEEEEEEccEEEEEcccccccEEEEEEEcccEccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEcccHHHHHHHHHcHHHHcccccccc
MMTDEDILKKLEDSTKNATRHQLETLQSILERQsgvrylqpylsgccapidaatykrtvplscyddyadhinqlaggdhgqndqpllavdpLVCFfyssgtssmkpklipyfDSALSKAASQIAIQGSVAILrrlfppkhdvnKILFFIYsdnktttkAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDdlengypclditevAMRDSVIevlggpqpdlsKRIRsicgesnwsgifsklwpnvryikCVTTGSMSQYCSKIKyyagevpvlggdyfasecyvginldiaqppqttrfvmlptaayfeflpfdmekneavgeetvdfsgvEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFynsspqvefvmrapkssfeiiSERDLMSAMESFQMMLRNVMAVEIVEFAgytnlesspkKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKvqrdrgeisplsvsivkpgtFDRLLQVAIEkgapasqykppkivrnREIVEFMEGCSLVTVRLDSLDG
MMTDEDILKKledstknatRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVlggpqpdlskrIRSICGEsnwsgifsklwpNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGeetvdfsgveigKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSpqvefvmrapkSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGytnlesspkKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIykvqrdrgeisplsvsivkpgTFDRLLQVAIEkgapasqykppkiVRNREIVEfmegcslvtvrldsldg
MMTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG
***************************SILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRL*****
***DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQ*************PPKIVRNREIVEFMEGCSLVTVRL*****
MMTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG
*MTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLD****
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query526 2.2.26 [Sep-21-2011]
Q60EY1488 Probable indole-3-acetic no no 0.600 0.647 0.498 1e-91
Q0D4Z6605 Probable indole-3-acetic no no 0.944 0.821 0.308 3e-74
A3BLS0605 Probable indole-3-acetic N/A no 0.944 0.821 0.308 3e-74
Q9LQ68597 Indole-3-acetic acid-amid no no 0.942 0.830 0.283 1e-70
Q6I581581 Probable indole-3-acetic no no 0.923 0.836 0.308 2e-69
O82333590 Probable indole-3-acetic no no 0.927 0.827 0.295 2e-68
Q9FZ87609 Indole-3-acetic acid-amid no no 0.946 0.817 0.301 5e-68
P0C0M2614 Probable indole-3-acetic no no 0.946 0.811 0.283 5e-68
Q9LYU4575 4-substituted benzoates-g no no 0.933 0.853 0.281 8e-66
Q9LSQ4612 Indole-3-acetic acid-amid no no 0.931 0.800 0.291 6e-65
>sp|Q60EY1|GH36_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2 Back     alignment and function desciption
 Score =  337 bits (865), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 166/333 (49%), Positives = 231/333 (69%), Gaps = 17/333 (5%)

Query: 182 ESKWEQLCDDLENGYPCLDI-TEVAMRDSVIE-VLGGPQPDLSKRIRSICGESNWSGIFS 239
           +SKW QLCDDLE G  C D+ T+ AMR +V + VL GP P+L+ R+R IC   +W G+  
Sbjct: 72  QSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRICERDDWRGVLR 131

Query: 240 KLWPNVRYIKCVTTGSMSQYCSKIKYYAGE-VPVLGGDYFASECYVGINLDIAQPPQTTR 298
           +LWP+ RYI CVTTG+M QY   IK++AGE +PVLG DY ASEC +GINL+   PP+ T 
Sbjct: 132 QLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGINLERTSPPEETT 191

Query: 299 FVMLPTAAYFEFLPFDMEKNEAVGE--ETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIV 356
           +V+LP AAYFEF+PFDM+         E VD +GVE GK YE+V TT+RG YRY++GD+V
Sbjct: 192 YVLLPRAAYFEFIPFDMDAAGRGAAAAEPVDIAGVEAGKTYELVATTFRGLYRYKVGDVV 251

Query: 357 KVVDFYNSSPQVEFVMRAP--KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT- 413
           K+  F++SSP+++FV RAP  +   E+++ERD+M+AM++FQ+ML++    E++EFA +  
Sbjct: 252 KIAGFHHSSPRLQFVTRAPPPQEHGEVLTERDVMAAMDTFQLMLKD--GGEVIEFAAFII 309

Query: 414 ---NLESSPKKLMIFVEIREGCTKLRD---SVAILRRCCSSLEDAFGSIYKVQRDRGEIS 467
                +   +   I VE+  G +KL D   S A LRRC + LE   G  Y++ R  G+++
Sbjct: 310 DGDGGQRRRRCATIAVEVSNG-SKLLDHERSAAFLRRCTAPLEGCLGGAYRLSRATGDVA 368

Query: 468 PLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 500
           PL V++V+PGTFDRL + AI  GAPA+QYKPP+
Sbjct: 369 PLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401
May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q0D4Z6|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1 Back     alignment and function description
>sp|A3BLS0|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2 Back     alignment and function description
>sp|Q9LQ68|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1 Back     alignment and function description
>sp|Q6I581|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1 Back     alignment and function description
>sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZ87|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1 Back     alignment and function description
>sp|P0C0M2|GH32_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYU4|GH312_ARATH 4-substituted benzoates-glutamate ligase GH3.12 OS=Arabidopsis thaliana GN=GH3.12 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSQ4|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
224131296578 GH3 family protein [Populus trichocarpa] 0.988 0.899 0.617 0.0
225436867578 PREDICTED: probable indole-3-acetic acid 0.986 0.897 0.595 0.0
356504890576 PREDICTED: probable indole-3-acetic acid 0.984 0.899 0.571 0.0
255638272576 unknown [Glycine max] 0.984 0.899 0.571 0.0
218196075 638 hypothetical protein OsI_18426 [Oryza sa 0.958 0.789 0.425 1e-130
115462041429 Os05g0143800 [Oryza sativa Japonica Grou 0.623 0.764 0.498 3e-94
82592860488 RecName: Full=Probable indole-3-acetic a 0.600 0.647 0.498 7e-90
53749339486 unknown protein [Oryza sativa Japonica G 0.596 0.646 0.501 9e-89
449442409598 PREDICTED: indole-3-acetic acid-amido sy 0.935 0.822 0.312 1e-76
342316045612 GH31 [Echinochloa crus-galli] 0.941 0.808 0.307 2e-74
>gi|224131296|ref|XP_002321049.1| GH3 family protein [Populus trichocarpa] gi|222861822|gb|EEE99364.1| GH3 family protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/583 (61%), Positives = 433/583 (74%), Gaps = 63/583 (10%)

Query: 2   MTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPL 61
           MT +++ + LED TKNA  HQL+TL SIL+ Q+ V YLQPYLS C AP+DAAT++  VPL
Sbjct: 1   MTYDELDRNLEDLTKNAAHHQLQTLHSILQHQASVGYLQPYLSACHAPVDAATFRSQVPL 60

Query: 62  SCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAAS 121
           S YDDY   INQLA GD   + QPLL+ DPL+CFFYSSGTS+MKPKLIPYFDSALSKAAS
Sbjct: 61  SSYDDYFHLINQLANGDIDHH-QPLLSADPLLCFFYSSGTSTMKPKLIPYFDSALSKAAS 119

Query: 122 QIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQG-------- 173
             A QGS AI R L PP+ +VNKIL+F+Y+D+  TT+ GFKVMAAS +PLQG        
Sbjct: 120 YNAHQGSAAIFRNLVPPRPEVNKILWFLYADDAPTTRGGFKVMAASTYPLQGNKSRSNWS 179

Query: 174 ---------------------------------------------LIGAFSFFESKWEQL 188
                                                        LI AFS  ESKWE+L
Sbjct: 180 QTLSCISPREVVFGSNIKQQMYCHLLCALRSFDIIDGIRAAYAAGLIRAFSLLESKWEKL 239

Query: 189 CDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYI 248
           CDDLE+G+P L+I + AM++SV+E LGGPQ DLS+RIR IC ESNW GI SKLWPNVRY+
Sbjct: 240 CDDLESGFPSLEIGDAAMKESVVEFLGGPQVDLSRRIREICAESNWGGILSKLWPNVRYV 299

Query: 249 KCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYF 308
           K VTTGSM QY SK+KYYAG+V +LGGDYFASEC +GINLDI QPP++TRFVMLPT AYF
Sbjct: 300 KSVTTGSMKQYYSKLKYYAGDVMILGGDYFASECCLGINLDIQQPPESTRFVMLPTTAYF 359

Query: 309 EFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQV 368
           EFLPFD+ ++  VGEETVDFSGV++GKMYEV VTTYRG YRYRLGDIV+VV F+NSSP V
Sbjct: 360 EFLPFDLNESSVVGEETVDFSGVKVGKMYEVAVTTYRGLYRYRLGDIVRVVGFHNSSPLV 419

Query: 369 EFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 428
           EFVMRAPK+ +EII+E+DLMSAMESFQ    + MA E+VEFA +++ E SPK+L +F+E 
Sbjct: 420 EFVMRAPKTGYEIITEKDLMSAMESFQ----HSMAAEVVEFASFSDFELSPKRLKVFIEF 475

Query: 429 REGC-----TKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLL 483
           REGC      KL+ SV  L+RCCSSLE+  G IYKVQ+DRGEI PL VS+V+ G+FD +L
Sbjct: 476 REGCDFLQEEKLQGSVEALQRCCSSLENGLGEIYKVQKDRGEIGPLLVSVVRSGSFDGIL 535

Query: 484 QVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG 526
           Q+AI+ GAPA QYKPPKI+RNREIV+FME  +++T+ LDS  G
Sbjct: 536 QMAIKNGAPAGQYKPPKIIRNREIVDFMEESAVLTISLDSFHG 578

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436867|ref|XP_002271002.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Vitis vinifera] gi|296086675|emb|CBI32310.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504890|ref|XP_003521227.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max] Back     alignment and taxonomy information
>gi|255638272|gb|ACU19449.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|218196075|gb|EEC78502.1| hypothetical protein OsI_18426 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115462041|ref|NP_001054620.1| Os05g0143800 [Oryza sativa Japonica Group] gi|113578171|dbj|BAF16534.1| Os05g0143800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|82592860|sp|Q60EY1.2|GH36_ORYSJ RecName: Full=Probable indole-3-acetic acid-amido synthetase GH3.6; AltName: Full=Auxin-responsive GH3-like protein 6; Short=OsGH3-6 Back     alignment and taxonomy information
>gi|53749339|gb|AAU90198.1| unknown protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449442409|ref|XP_004138974.1| PREDICTED: indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus] gi|449477861|ref|XP_004155145.1| PREDICTED: indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|342316045|gb|AEL22119.1| GH31 [Echinochloa crus-galli] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
UNIPROTKB|Q60EY1488 GH3.6 "Probable indole-3-aceti 0.615 0.663 0.495 8e-89
TAIR|locus:2058588595 GH3.3 [Arabidopsis thaliana (t 0.655 0.579 0.359 3.6e-76
UNIPROTKB|Q6I581581 GH3.5 "Probable indole-3-aceti 0.629 0.569 0.347 3.2e-73
TAIR|locus:2060500590 GH3.1 "AT2G14960" [Arabidopsis 0.642 0.572 0.354 2.3e-72
UNIPROTKB|P0C0M2614 GH3.2 "Probable indole-3-aceti 0.663 0.568 0.322 3.3e-71
TAIR|locus:2125571591 DFL2 "DWARF IN LIGHT 2" [Arabi 0.671 0.597 0.327 3.7e-70
TAIR|locus:2147314612 DFL1 "DWARF IN LIGHT 1" [Arabi 0.655 0.563 0.336 7.7e-70
TAIR|locus:2008124525 AT1G48670 "AT1G48670" [Arabido 0.942 0.944 0.314 3e-69
TAIR|locus:2131739612 WES1 [Arabidopsis thaliana (ta 0.655 0.563 0.336 3.3e-69
TAIR|locus:2043308585 GH3.9 "AT2G47750" [Arabidopsis 0.655 0.589 0.332 5.3e-69
UNIPROTKB|Q60EY1 GH3.6 "Probable indole-3-acetic acid-amido synthetase GH3.6" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 858 (307.1 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
 Identities = 169/341 (49%), Positives = 236/341 (69%)

Query:   174 LIGAFSFFESKWEQLCDDLENGYPCLDI-TEVAMRDSVIE-VLGGPQPDLSKRIRSICGE 231
             L  A    +SKW QLCDDLE G  C D+ T+ AMR +V + VL GP P+L+ R+R IC  
Sbjct:    64 LARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRICER 123

Query:   232 SNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGE-VPVLGGDYFASECYVGINLDI 290
              +W G+  +LWP+ RYI CVTTG+M QY   IK++AGE +PVLG DY ASEC +GINL+ 
Sbjct:   124 DDWRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGINLER 183

Query:   291 AQPPQTTRFVMLPTAAYFEFLPFDMEK--NEAVGEETVDFSGVEIGKMYEVVVTTYRGFY 348
               PP+ T +V+LP AAYFEF+PFDM+     A   E VD +GVE GK YE+V TT+RG Y
Sbjct:   184 TSPPEETTYVLLPRAAYFEFIPFDMDAAGRGAAAAEPVDIAGVEAGKTYELVATTFRGLY 243

Query:   349 RYRLGDIVKVVDFYNSSPQVEFVMRAP--KSSFEIISERDLMSAMESFQMMLRNVMAVEI 406
             RY++GD+VK+  F++SSP+++FV RAP  +   E+++ERD+M+AM++FQ+ML++    E+
Sbjct:   244 RYKVGDVVKIAGFHHSSPRLQFVTRAPPPQEHGEVLTERDVMAAMDTFQLMLKD--GGEV 301

Query:   407 VEFAGYT-NLESSPKK---LMIFVEIREGCTKLRD---SVAILRRCCSSLEDAFGSIYKV 459
             +EFA +  + +   ++     I VE+  G +KL D   S A LRRC + LE   G  Y++
Sbjct:   302 IEFAAFIIDGDGGQRRRRCATIAVEVSNG-SKLLDHERSAAFLRRCTAPLEGCLGGAYRL 360

Query:   460 QRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 500
              R  G+++PL V++V+PGTFDRL + AI  GAPA+QYKPP+
Sbjct:   361 SRATGDVAPLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401
GO:0009416 "response to light stimulus" evidence=IC
GO:0009733 "response to auxin stimulus" evidence=IC
TAIR|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008124 AT1G48670 "AT1G48670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043308 GH3.9 "AT2G47750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
pfam03321513 pfam03321, GH3, GH3 auxin-responsive promoter 4e-98
PLN02249597 PLN02249, PLN02249, indole-3-acetic acid-amido syn 1e-83
PLN02247606 PLN02247, PLN02247, indole-3-acetic acid-amido syn 3e-73
PLN02620612 PLN02620, PLN02620, indole-3-acetic acid-amido syn 2e-69
PLN02620612 PLN02620, PLN02620, indole-3-acetic acid-amido syn 7e-13
PLN02247606 PLN02247, PLN02247, indole-3-acetic acid-amido syn 3e-11
>gnl|CDD|217492 pfam03321, GH3, GH3 auxin-responsive promoter Back     alignment and domain information 
 Score =  306 bits (785), Expect = 4e-98
 Identities = 157/547 (28%), Positives = 242/547 (44%), Gaps = 78/547 (14%)

Query: 6   DILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLSCY 64
            +LK++E  T NA   Q E L+ ILER +   Y + Y  SG         +K+ VP+  Y
Sbjct: 1   KVLKEIELFTSNAVEVQEEVLREILERNADTEYGKKYGFSGIT---SYDDFKKRVPVVTY 57

Query: 65  DDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIA 124
           +D   +I ++A G+       +L   P+  F  SSGT+  K K IP  D  L +     A
Sbjct: 58  EDLKPYIERIANGE-----PSILWPGPITYFALSSGTTGGKSKFIPVTDELLERFHFLGA 112

Query: 125 IQGSVAILRRLFPPKHDVNKILFFIYSDNKTT--TKAGFKVMAASAFPLQGLIGAFSFF- 181
           +   +  L    P      K L    S  K    T  G      S    + L   F  + 
Sbjct: 113 LAVLLLYLNNNPPGLFFEGKSLGLGGSFVKPELKTPGGIPAGDLSTILYRNLPFWFKLYT 172

Query: 182 --------ESKWEQLCDDLENGYPCLDITEVA-----MRDSVIEVL-------------- 214
                      W+     L  G    D+  ++     M   +I  L              
Sbjct: 173 SPDEVILCIDDWQSKYCALLCGLIREDVGRISGVPAWMLVLLIRFLEKHWKELCTDIRTG 232

Query: 215 -GGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVL 273
              P P+L+  I   C     S I  +LWPN++Y+     GSM  Y  K++   G +P+ 
Sbjct: 233 TLRPNPELADLIEQEC-----SKIIKELWPNLKYVFVWGGGSMEPYRPKLEKLLGGLPLY 287

Query: 274 GGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEI 333
              Y ASE + GINLD    P+   + ++P + +FEF+P D + +E    + VD   VE+
Sbjct: 288 SETYAASEGFFGINLD----PEDVSYTLMPNSGFFEFIPVDEDGDED--PKIVDLVEVEL 341

Query: 334 GKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSF-----EIISERDLM 388
           GK YE+V+TT+ G YRYR+GD+V+V  FYN +PQ EFV R           E ++E +L 
Sbjct: 342 GKNYELVITTFAGLYRYRIGDVVRVTGFYNYTPQFEFVGR--TKHVLSLFGEKLTEEELE 399

Query: 389 SAMESFQMMLRNVMA---VEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRC 445
            A++       N +    +EIVE+    +  + P   + + E+            +L  C
Sbjct: 400 KAVK-------NALESTGLEIVEYTSAPDTSTEPGHYVHYWEL-------EFKPEVLEEC 445

Query: 446 CSSLEDAF--GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEK-GAPASQYKPPKIV 502
             +L++A    S Y+  R++G + PL + +V PGTF   ++    K G    QYK P++ 
Sbjct: 446 ARALDEALQENSDYRRAREKGSLGPLEIRVVPPGTFYEWMKAFKGKLGGSIGQYKVPRLS 505

Query: 503 RNREIVE 509
           + RE +E
Sbjct: 506 KEREYLE 512

Length = 513
>gnl|CDD|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 526
PLN02620612 indole-3-acetic acid-amido synthetase 100.0
PLN02247606 indole-3-acetic acid-amido synthetase 100.0
PLN02249597 indole-3-acetic acid-amido synthetase 100.0
PF03321528 GH3: GH3 auxin-responsive promoter; InterPro: IPR0 100.0
COG1541438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 100.0
TIGR03335445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 99.97
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 99.94
TIGR02304430 aden_form_hyp probable adenylate-forming enzyme. M 99.92
PRK00174637 acetyl-CoA synthetase; Provisional 99.42
TIGR02188625 Ac_CoA_lig_AcsA acetate--CoA ligase. This model de 99.36
PRK06060 705 acyl-CoA synthetase; Validated 99.29
PRK06187521 long-chain-fatty-acid--CoA ligase; Validated 99.29
PRK09274552 peptide synthase; Provisional 99.28
PTZ00237647 acetyl-CoA synthetase; Provisional 99.25
PLN02654666 acetate-CoA ligase 99.25
PRK07788549 acyl-CoA synthetase; Validated 99.24
PRK13295547 cyclohexanecarboxylate-CoA ligase; Reviewed 99.24
PRK04319570 acetyl-CoA synthetase; Provisional 99.23
PRK05677562 long-chain-fatty-acid--CoA ligase; Validated 99.22
PRK06145497 acyl-CoA synthetase; Validated 99.21
PRK06334539 long chain fatty acid--[acyl-carrier-protein] liga 99.21
PLN02574560 4-coumarate--CoA ligase-like 99.21
PRK07514504 malonyl-CoA synthase; Validated 99.19
TIGR03205541 pimA dicarboxylate--CoA ligase PimA. PimA, a membe 99.19
PRK06155542 crotonobetaine/carnitine-CoA ligase; Provisional 99.18
PRK10524629 prpE propionyl-CoA synthetase; Provisional 99.17
TIGR01734502 D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig 99.17
PRK05605573 long-chain-fatty-acid--CoA ligase; Validated 99.17
PRK07786542 long-chain-fatty-acid--CoA ligase; Validated 99.16
TIGR02316628 propion_prpE propionate--CoA ligase. This family c 99.16
PRK07656513 long-chain-fatty-acid--CoA ligase; Validated 99.16
PRK09088488 acyl-CoA synthetase; Validated 99.15
PRK04813503 D-alanine--poly(phosphoribitol) ligase subunit 1; 99.14
PRK06164540 acyl-CoA synthetase; Validated 99.13
PRK12406509 long-chain-fatty-acid--CoA ligase; Provisional 99.13
PRK07529632 AMP-binding domain protein; Validated 99.13
PRK08316523 acyl-CoA synthetase; Validated 99.13
PRK03584655 acetoacetyl-CoA synthetase; Provisional 99.12
PRK08974560 long-chain-fatty-acid--CoA ligase; Validated 99.11
PRK13382537 acyl-CoA synthetase; Provisional 99.11
PRK06839496 acyl-CoA synthetase; Validated 99.11
PRK08314546 long-chain-fatty-acid--CoA ligase; Validated 99.1
TIGR03208538 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. 99.09
PRK07638487 acyl-CoA synthetase; Validated 99.09
PRK13383516 acyl-CoA synthetase; Provisional 99.09
PLN02330546 4-coumarate--CoA ligase-like 1 99.08
PRK05852534 acyl-CoA synthetase; Validated 99.08
PRK06710563 long-chain-fatty-acid--CoA ligase; Validated 99.07
PRK07059557 Long-chain-fatty-acid--CoA ligase; Validated 99.07
PRK086331146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.06
PRK07867529 acyl-CoA synthetase; Validated 99.06
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 99.06
PLN02246537 4-coumarate--CoA ligase 99.05
TIGR02262508 benz_CoA_lig benzoate-CoA ligase family. Character 99.05
PRK12583558 acyl-CoA synthetase; Provisional 99.05
PRK07470528 acyl-CoA synthetase; Validated 99.05
PRK07787471 acyl-CoA synthetase; Validated 99.05
PRK12492562 long-chain-fatty-acid--CoA ligase; Provisional 99.04
PRK10946536 entE enterobactin synthase subunit E; Provisional 99.04
TIGR01733408 AA-adenyl-dom amino acid adenylation domain. This 99.04
PLN03051499 acyl-activating enzyme; Provisional 99.03
TIGR02275527 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot 99.01
TIGR01217652 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym 99.01
PRK08315559 AMP-binding domain protein; Validated 99.0
PRK08751560 putative long-chain fatty acyl CoA ligase; Provisi 99.0
TIGR03098515 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor 98.99
PLN02860563 o-succinylbenzoate-CoA ligase 98.98
PRK05857540 acyl-CoA synthetase; Validated 98.95
COG0365528 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l 98.95
PRK06188524 acyl-CoA synthetase; Validated 98.95
PRK13390501 acyl-CoA synthetase; Provisional 98.94
PRK07768545 long-chain-fatty-acid--CoA ligase; Validated 98.94
COG0318534 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l 98.93
PLN02387696 long-chain-fatty-acid-CoA ligase family protein 98.92
PRK07798533 acyl-CoA synthetase; Validated 98.92
PRK06087547 short chain acyl-CoA synthetase; Reviewed 98.91
PRK12467 3956 peptide synthase; Provisional 98.91
PRK12467 3956 peptide synthase; Provisional 98.91
PRK08279600 long-chain-acyl-CoA synthetase; Validated 98.91
PRK05851525 long-chain-fatty-acid--[acyl-carrier-protein] liga 98.9
PRK07769631 long-chain-fatty-acid--CoA ligase; Validated 98.89
PRK03640483 O-succinylbenzoic acid--CoA ligase; Provisional 98.89
PRK05620576 long-chain-fatty-acid--CoA ligase; Validated 98.89
PLN02614666 long-chain acyl-CoA synthetase 98.88
TIGR01923436 menE O-succinylbenzoate-CoA ligase. This model rep 98.87
PRK05850578 acyl-CoA synthetase; Validated 98.86
PRK08008517 caiC putative crotonobetaine/carnitine-CoA ligase; 98.86
PLN03102579 acyl-activating enzyme; Provisional 98.85
PRK08308414 acyl-CoA synthetase; Validated 98.85
PRK123165163 peptide synthase; Provisional 98.85
PRK12316 5163 peptide synthase; Provisional 98.85
PRK07008539 long-chain-fatty-acid--CoA ligase; Validated 98.85
PRK08276502 long-chain-fatty-acid--CoA ligase; Validated 98.84
PF00501417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 98.84
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 98.83
PRK056914334 peptide synthase; Validated 98.83
PLN02736651 long-chain acyl-CoA synthetase 98.82
PRK13388540 acyl-CoA synthetase; Provisional 98.81
PRK08043718 bifunctional acyl-[acyl carrier protein] synthetas 98.81
PRK08180614 feruloyl-CoA synthase; Reviewed 98.8
PLN03052728 acetate--CoA ligase; Provisional 98.8
PRK09192579 acyl-CoA synthetase; Validated 98.8
PRK12476612 putative fatty-acid--CoA ligase; Provisional 98.79
PRK06018542 putative acyl-CoA synthetase; Provisional 98.78
PRK05691 4334 peptide synthase; Validated 98.76
PRK13391511 acyl-CoA synthetase; Provisional 98.75
PRK068141140 acylglycerophosphoethanolamine acyltransferase; Pr 98.73
PTZ00342746 acyl-CoA synthetase; Provisional 98.72
PLN02861660 long-chain-fatty-acid-CoA ligase 98.71
PRK06178567 acyl-CoA synthetase; Validated 98.7
PRK12582624 acyl-CoA synthetase; Provisional 98.69
KOG1175626 consensus Acyl-CoA synthetase [Lipid transport and 98.67
PF04443365 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR 98.66
PRK07824358 O-succinylbenzoic acid--CoA ligase; Provisional 98.64
PRK07445452 O-succinylbenzoic acid--CoA ligase; Reviewed 98.63
PRK08162545 acyl-CoA synthetase; Validated 98.62
PLN02430660 long-chain-fatty-acid-CoA ligase 98.62
COG1021542 EntE Peptide arylation enzymes [Secondary metaboli 98.55
KOG1176537 consensus Acyl-CoA synthetase [Lipid transport and 98.48
PTZ00216700 acyl-CoA synthetase; Provisional 98.48
COG1022613 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) 98.4
PRK09029458 O-succinylbenzoic acid--CoA ligase; Provisional 98.38
PLN02479567 acetate-CoA ligase 98.37
TIGR02372386 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv 98.24
KOG1177596 consensus Long chain fatty acid acyl-CoA ligase [L 98.23
KOG1179649 consensus Very long-chain acyl-CoA synthetase/fatt 98.2
PRK07868994 acyl-CoA synthetase; Validated 98.13
KOG1256691 consensus Long-chain acyl-CoA synthetases (AMP-for 98.09
KOG1180678 consensus Acyl-CoA synthetase [Lipid transport and 97.49
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 97.14
COG1020642 EntF Non-ribosomal peptide synthetase modules and 96.62
PRK09188365 serine/threonine protein kinase; Provisional 86.05
>PLN02620 indole-3-acetic acid-amido synthetase Back     alignment and domain information 
Probab=100.00  E-value=4.3e-113  Score=925.64  Aligned_cols=506  Identities=32%  Similarity=0.630  Sum_probs=465.4

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchhhhh-hcCCCCCCChhhHhhcCCCcchhhhhHHHHHHhCCCCCCC
Q 009765            4 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQN   82 (526)
Q Consensus         4 ~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~t~ygr~~-f~~i~~~~s~~df~~~vPl~~y~d~~~~ier~~~Ge~~~~   82 (526)
                      +++.++.||..++|+.++|+++|++||++|++|+|||+| |++|   +++++||++|||++|+|++|||+|+++|+.   
T Consensus        21 ~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i---~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~---   94 (612)
T PLN02620         21 NKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGR---TDRETFKKVMPVITYEDIQPDINRIANGDT---   94 (612)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCC---CCHHHHHHhCCCccHHHhHHHHHHHHcCCC---
Confidence            366789999999999999999999999999999999999 9999   999999999999999999999999999987   


Q ss_pred             CCCCccCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCce
Q 009765           83 DQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFK  162 (526)
Q Consensus        83 ~~~~l~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gip  162 (526)
                       ++|||++||.+|..|||||+|++|+||+|+++++.++.  +..+|...++++ .|++..||.||+++......|++|||
T Consensus        95 -s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~--~~~~~~~~~~~~-~p~l~~Gk~~~~~~~~~~~~T~~Gip  170 (612)
T PLN02620         95 -SPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSL--LYSLLMPVMSQF-VPGLEKGKGMYFLFIKSEAKTPGGLV  170 (612)
T ss_pred             -CCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHH--HHHHHHHHHHhh-CCCcccCcEEEEEecccCccCCCCcc
Confidence             79999999999999999998899999999999988655  566777776664 38888999999998888899999999


Q ss_pred             eeeccchhHH------------------------------------------------------HHHHHHhhhHHHHHHH
Q 009765          163 VMAASAFPLQ------------------------------------------------------GLIGAFSFFESKWEQL  188 (526)
Q Consensus       163 ~g~~s~~~~~------------------------------------------------------~ll~~~~~l~~~w~~l  188 (526)
                      +|++++.+|+                                                      .++.+++.|+++|++|
T Consensus       171 ~g~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L  250 (612)
T PLN02620        171 ARPVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLL  250 (612)
T ss_pred             cccccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHH
Confidence            9999987555                                                      6778889999999999


Q ss_pred             HHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCcccccCCCCceEEEEecCchhhhHHHHHHHhC
Q 009765          189 CDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAG  268 (526)
Q Consensus       189 ~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g  268 (526)
                      |+||+.|+++.++++|.+|.++++++ +|+|++|+.|+++|.+.+|.|++++||||+++|+||++|+|++|++.|+.|+|
T Consensus       251 ~~DI~~G~ls~~itd~~~R~av~~~L-~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~g  329 (612)
T PLN02620        251 CRDIRTGTIDSQITDPSVREAVMKIL-KPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSN  329 (612)
T ss_pred             HHHHhcCCCCccCCCHHHHHHHHhhc-CCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcC
Confidence            99999999999999999999999999 79999999999999988999999999999999999999999999999999999


Q ss_pred             CCCeeccccccCCceeeeecCCCCCCCCcceecCCCceEEEeeeCCCCCc------------cccCCceeccccccCCce
Q 009765          269 EVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN------------EAVGEETVDFSGVEIGKM  336 (526)
Q Consensus       269 ~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~------------~~~~~~~l~l~ele~G~~  336 (526)
                      |+|+++.+|+||||+||+|++|.|++++..|+++|+.+||||||++..+.            +.+++++++++||+.|+.
T Consensus       330 glpl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~  409 (612)
T PLN02620        330 GLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQE  409 (612)
T ss_pred             CCccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCCe
Confidence            99999999999999999999999999889999999999999999875210            134577899999999999


Q ss_pred             EEEEEccCCCeecceeCCEEEEeeecCCCCEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee
Q 009765          337 YEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT  413 (526)
Q Consensus       337 yelVvTt~~GL~RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~  413 (526)
                      |||||||.+||||||+||||+|+||||++|+|+|++|.+.   |.|||++|.+++.||.+|...|.. .|+.|+||++.+
T Consensus       410 YelvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~-~~~~l~dyts~~  488 (612)
T PLN02620        410 YELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVP-FDASLTEYTSYA  488 (612)
T ss_pred             EEEEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcc-cCceeeeEEecc
Confidence            9999999999999999999999999999999999999998   999999999999999999987732 489999999999


Q ss_pred             cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHhhhhcC-CCCCcEEEEeCCCcHHHHHHHHHHcCCC
Q 009765          414 NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGAP  492 (526)
Q Consensus       414 ~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R~~~-~l~p~~v~~v~~g~f~~~~~~~~~~G~~  492 (526)
                      +.++.||||++|||+..... .+.+...+++||..||++||.+|+.+|..+ .|+|++|++|++|||..++++++++|++
T Consensus       489 d~~~~PghYvl~~El~~~~~-~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s  567 (612)
T PLN02620        489 DTSTIPGHYVLFWELCLNGS-TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGAS  567 (612)
T ss_pred             ccCCCCCceEEEEEEecCCC-CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCc
Confidence            98788999999999841100 124567889999999999999999999987 5999999999999999999999999999


Q ss_pred             CCCCCCCcccCCHhHHHHHhccceEEEecc
Q 009765          493 ASQYKPPKIVRNREIVEFMEGCSLVTVRLD  522 (526)
Q Consensus       493 ~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~  522 (526)
                      .+|||+|||+++++++++|+++|++..--.
T Consensus       568 ~~QyK~Pr~v~~~~~~~~l~~~v~~~~~s~  597 (612)
T PLN02620        568 INQYKTPRCVKFAPIIELLNSRVVSNYFSP  597 (612)
T ss_pred             cccccCceEecCHHHHHHHHhhhheeeccc
Confidence            999999999999999999999999976533

>PLN02247 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02249 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme Back     alignment and domain information
>PRK00174 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase Back     alignment and domain information
>PRK06060 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK09274 peptide synthase; Provisional Back     alignment and domain information
>PTZ00237 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02654 acetate-CoA ligase Back     alignment and domain information
>PRK07788 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>PRK04319 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06145 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PLN02574 4-coumarate--CoA ligase-like Back     alignment and domain information
>PRK07514 malonyl-CoA synthase; Validated Back     alignment and domain information
>TIGR03205 pimA dicarboxylate--CoA ligase PimA Back     alignment and domain information
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>PRK10524 prpE propionyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR02316 propion_prpE propionate--CoA ligase Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK09088 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>PRK06164 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK07529 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK08316 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK03584 acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK13382 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06839 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>PRK07638 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13383 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02330 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>PRK05852 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK07867 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PLN02246 4-coumarate--CoA ligase Back     alignment and domain information
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family Back     alignment and domain information
>PRK12583 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07470 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07787 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK10946 entE enterobactin synthase subunit E; Provisional Back     alignment and domain information
>TIGR01733 AA-adenyl-dom amino acid adenylation domain Back     alignment and domain information
>PLN03051 acyl-activating enzyme; Provisional Back     alignment and domain information
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase Back     alignment and domain information
>PRK08315 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Back     alignment and domain information
>PLN02860 o-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK05857 acyl-CoA synthetase; Validated Back     alignment and domain information
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>PRK06188 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13390 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02387 long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>PRK07798 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06087 short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK08279 long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN02614 long-chain acyl-CoA synthetase Back     alignment and domain information
>TIGR01923 menE O-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK05850 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>PLN03102 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK08308 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PLN02736 long-chain acyl-CoA synthetase Back     alignment and domain information
>PRK13388 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK08180 feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>PLN03052 acetate--CoA ligase; Provisional Back     alignment and domain information
>PRK09192 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12476 putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK06018 putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK13391 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PTZ00342 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02861 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK06178 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12582 acyl-CoA synthetase; Provisional Back     alignment and domain information
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria Back     alignment and domain information
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>PRK08162 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02430 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00216 acyl-CoA synthetase; Provisional Back     alignment and domain information
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PLN02479 acetate-CoA ligase Back     alignment and domain information
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] Back     alignment and domain information
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] Back     alignment and domain information
>PRK07868 acyl-CoA synthetase; Validated Back     alignment and domain information
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] Back     alignment and domain information
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK09188 serine/threonine protein kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
4b2g_A609 Crystal Structure Of An Indole-3-acetic Acid Amido 2e-71
4ewv_A581 Crystal Structure Of Gh3.12 In Complex With Ampcpp 7e-67
4eq4_A581 Crystal Structure Of Seleno-Methionine Derivatized 8e-64
4epl_A581 Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J 8e-62
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609 Back     alignment and structure 
Iteration: 1

 Score =  266 bits (680), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 275/571 (48%), Gaps = 74/571 (12%)
Query: 4   DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLS 62
           D   L+ +E+ T+NA   Q   L  IL R     YL+ + L G        T+K  +P+ 
Sbjct: 19  DAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTV---RETFKSKIPVI 75
Query: 63  CYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQ 122
            Y+D    I ++A GD       +L+  P+  F  SSGTS+ + KL+P     L +    
Sbjct: 76  KYEDLQPEIQRIANGDRSA----ILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQML 131
Query: 123 IAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAG---------------FK----- 162
            ++   V     L+ P  D  K L+F++  ++T T  G               FK     
Sbjct: 132 YSLLMPVM---NLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYD 188
Query: 163 -----------VMAASAFP-----------------------LQGLIGAFSFFESKWEQL 188
                      ++ A +F                          GL+ A  F +  W QL
Sbjct: 189 PYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQL 248
Query: 189 CDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYI 248
             D+  G     IT+ ++R+ V  VL  P P+L+  +   C + NW GI +++WPN +Y+
Sbjct: 249 THDIRTGTLSPKITDPSVRNCVAGVL-KPDPELADLVAGECSKDNWEGIITRIWPNTKYL 307
Query: 249 KCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYF 308
             + TG+M+QY   + YY+G +P+    Y +SECY G+NL+    P    + ++P  AYF
Sbjct: 308 DVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYF 367
Query: 309 EFLPFDMEK---NEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSS 365
           EFLP +      +       VD + VE+GK YE+V+TTY G YRYR+GDI++V  F+NS+
Sbjct: 368 EFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSA 427
Query: 366 PQVEFVMRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKL 422
           PQ  FV R         +   E +L  A+++   +LR V    +VE+  + + ++ P   
Sbjct: 428 PQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREV-NTSVVEYTSFADTKTIPGHY 486
Query: 423 MIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDR 481
           +I+ E+    +    S  +L +CC ++E++  S+Y+  R     I PL + +VK GTF+ 
Sbjct: 487 VIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEE 546
Query: 482 LLQVAIEKGAPASQYKPPKIVRNREIVEFME 512
           L+  AI +GA  +QYK P+ V    I+E ++
Sbjct: 547 LMDYAISRGASINQYKVPRCVNFTPIMELLD 577
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581 Back     alignment and structure
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581 Back     alignment and structure
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
4eql_A581 4-substituted benzoates-glutamate ligase GH3.12; f 2e-85
4epl_A581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 7e-83
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581 Back     alignment and structure
 Score =  274 bits (700), Expect = 2e-85
 Identities = 146/576 (25%), Positives = 269/576 (46%), Gaps = 79/576 (13%)

Query: 3   TDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLS 62
            +E   K+L+D T N    Q   L+ I+   +   YLQ +L       D   +K+ VP+ 
Sbjct: 13  INETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLID---RFDKELFKKNVPIV 69

Query: 63  CYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQ 122
            Y+D   +++++  G+       +++   +  F  SSGTS    K++P+ +  L      
Sbjct: 70  SYEDIKPYLDRVVNGE----SSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFI 125

Query: 123 IAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAF------------- 169
             ++  + ++ +      +   ++F  ++  ++ T +G     A++              
Sbjct: 126 YDLR--MQVITKHVKGVEEGKGMMFL-FTKQESMTPSGLPARVATSSYFKSDYFKNRPSN 182

Query: 170 -------PLQGLIGAFSFFESKWEQLC--------------------------------- 189
                  P + ++   +        LC                                 
Sbjct: 183 WYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEEL 242

Query: 190 -DDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYI 248
             ++ +G+    +T++  ++SV  VLGGP+P+L+  I  IC +++W GI  +LWPN +YI
Sbjct: 243 CSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYI 302

Query: 249 KCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYF 308
           + V TGSM QY   + YY  ++P++   Y +SE   GINLD    P+   +  +P  +YF
Sbjct: 303 ETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYF 362

Query: 309 EFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQV 368
           EF+P D         + VD   V++G  YE VVT + G YR R+GDIV V  FYN++PQ 
Sbjct: 363 EFIPMDGGDK----NDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQF 418

Query: 369 EFVMRAPKSS---FEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIF 425
           +FV R         +  +E DL  A+   +++L +   +++ +F  Y +  + P   +++
Sbjct: 419 KFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYVVY 477

Query: 426 VEIREGCTKLRDSVAI------LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIVKPGT 478
           +E+     + +++         L  CC  +E++  ++YK  R + G I PL + +V+ GT
Sbjct: 478 LEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGT 537

Query: 479 FDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 514
           FD L+   I +GA   QYK P+ +++ + ++ +E C
Sbjct: 538 FDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETC 573
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
4epl_A581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 100.0
4eql_A581 4-substituted benzoates-glutamate ligase GH3.12; f 100.0
4b2g_A609 GH3-1 auxin conjugating enzyme; signaling protein, 100.0
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 99.92
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.91
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.9
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 99.7
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 99.45
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 99.4
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 99.38
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 99.37
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 99.36
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 99.36
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 99.35
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 99.35
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 99.35
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 99.34
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 99.34
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 99.33
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 99.32
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 99.3
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 99.3
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 99.3
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 99.3
3rg2_A617 Enterobactin synthase component E (ENTE), 2,3-DIH 99.28
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 99.27
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 99.26
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 99.22
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 99.21
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 99.16
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 99.15
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 99.14
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 99.12
4gr5_A570 Non-ribosomal peptide synthetase; MBTH-like domain 99.11
4dg8_A620 PA1221; ANL superfamily, adenylation domain, pepti 99.1
4gs5_A358 Acyl-COA synthetase (AMP-forming)/AMP-acid ligase 99.03
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 98.94
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 98.93
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 98.37
3lax_A109 Phenylacetate-coenzyme A ligase; structural genomi 96.14
3gxs_A109 Phenylacetate-coenzyme A ligase; APC62324.1, struc 95.97
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=2.9e-110  Score=910.36  Aligned_cols=499  Identities=32%  Similarity=0.591  Sum_probs=450.0

Q ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchhhhh-hcCCCCCCChh-hHhhcCCCcchhhhhHHHHHHhCCCCC
Q 009765            3 TDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAA-TYKRTVPLSCYDDYADHINQLAGGDHG   80 (526)
Q Consensus         3 ~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~t~ygr~~-f~~i~~~~s~~-df~~~vPl~~y~d~~~~ier~~~Ge~~   80 (526)
                      ++++.+++||+.++|+.++|+++|++||++|++|+|||+| |++|  ++|++ ||+++|||++|+|++|||||+++||. 
T Consensus        15 ~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i--~~~~e~dF~~~VPi~~Yedl~pyIeRi~~Ge~-   91 (581)
T 4epl_A           15 DMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGN--ATDPEEAFKSMVPLVTDVELEPYIKRMVDGDT-   91 (581)
T ss_dssp             CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC------CHHHHHHHHSCCBCHHHHHHHHHHHHTTCC-
T ss_pred             ccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcc--cCCHHHHHHHhCCCccHHHHHHHHHHHHCCCC-
Confidence            5778899999999999999999999999999999999999 9877  25789 99999999999999999999999995 


Q ss_pred             CCCCCCccCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCceEEEEeccCCccccC
Q 009765           81 QNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHD-VNKILFFIYSDNKTTTKA  159 (526)
Q Consensus        81 ~~~~~~l~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~  159 (526)
                         ++|||++||.+|..|||||+|++|+||+|+++++.++.  +..++.++++++  |++. .||.|+++++++...+++
T Consensus        92 ---~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~--~~~~~~~~~~~~--p~l~~~Gk~L~l~~~s~~~~t~~  164 (581)
T 4epl_A           92 ---SPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQ--LFRTAFAFRNRD--FPIDDNGKALQFIFSSKQYISTG  164 (581)
T ss_dssp             ---SSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH--SCCCTTCEEEEECCCCCCEECTT
T ss_pred             ---CCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHhhC--CccccCCcEEEEeecCCcccCCC
Confidence               59999999999999999999999999999999988544  556677777777  8888 899999888888888999


Q ss_pred             CceeeeccchhHH------------------------------------------------------HHHHHHhhhHHHH
Q 009765          160 GFKVMAASAFPLQ------------------------------------------------------GLIGAFSFFESKW  185 (526)
Q Consensus       160 gip~g~~s~~~~~------------------------------------------------------~ll~~~~~l~~~w  185 (526)
                      |+|+|++|+++++                                                      .++++++.++++|
T Consensus       165 Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~W  244 (581)
T 4epl_A          165 GVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVW  244 (581)
T ss_dssp             SCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             CceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHH
Confidence            9999999998662                                                      4566777899999


Q ss_pred             HHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccC-CCCCcccccCCCCceEEEEecCchhhhHHHHH
Q 009765          186 EQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGES-NWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIK  264 (526)
Q Consensus       186 ~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~-g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~  264 (526)
                      +++|+||++|++++++++|.+|++|++++ .|+|.+|++|+++|.+. .|.|++++|||||++|.||++|+|++|+++++
T Consensus       245 e~l~~dI~~gtl~~~it~~~~R~~l~~v~-~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~  323 (581)
T 4epl_A          245 EEIVTDIKDGVLSNRITVPSVRTAMSKLL-TPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLR  323 (581)
T ss_dssp             HHHHHHHHHTCCCTTCCCHHHHHHHHTTC-CCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHH
T ss_pred             HHHHHHHHhcCCCcCCCCHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHH
Confidence            99999999999999999999999999999 79999999999999985 69999999999999999999999999999999


Q ss_pred             HHhCCCCeeccccccCCceeeeecCCCCCCCCcceecCCCceEEEeeeCCCCCccccCCceeccccccCCceEEEEEccC
Q 009765          265 YYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY  344 (526)
Q Consensus       265 ~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~  344 (526)
                      +|+|++|+++.+|+||||++|+|+++.|++++..|+++|+.+||||||.++.  +.+++++++++|||.|+.|||||||.
T Consensus       324 ~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~--~~~~~~~v~l~eve~G~~YelviTt~  401 (581)
T 4epl_A          324 HYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSET--GEGEEKPVGLTQVKIGEEYEVVITNY  401 (581)
T ss_dssp             HHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC---------CCCEEGGGCCTTCEEEEEEEST
T ss_pred             HHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccc--cCCCCceeeHHHcCCCCeEEEEEeec
Confidence            9998899999999999999999999999987789999999999999998764  34568899999999999999999999


Q ss_pred             CCeecceeCCEEEEeeecCCCCEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCce
Q 009765          345 RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKK  421 (526)
Q Consensus       345 ~GL~RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~  421 (526)
                      +||||||+||+|+|+||+|++|+|+|+||.++   +.|||++|++|+.||.+|++.|.. +|+.|.||++.++.++.|||
T Consensus       402 ~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~-~~~~l~eft~~~d~~~~p~h  480 (581)
T 4epl_A          402 AGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPGH  480 (581)
T ss_dssp             TSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHT-TTCCEEEEEEEEECSSSSCE
T ss_pred             cceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcc-cCCeEEEEEEecCCCCCCCc
Confidence            99999999999999999999999999999998   999999999999999999987743 79999999999987777899


Q ss_pred             EEEEEEeecCccccCCCHHHHHHHHHHHHHHh-ChhHHhhhhcCCCCCcEEEEeCCCcHHHHHHHHHHcCCCCCCCCCCc
Q 009765          422 LMIFVEIREGCTKLRDSVAILRRCCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK  500 (526)
Q Consensus       422 y~l~vE~~~~~~~~~~~~~~~~~~~~~ld~~L-n~~Y~~~R~~~~l~p~~v~~v~~g~f~~~~~~~~~~G~~~~Q~K~Pr  500 (526)
                      |++|||+.+.     .+.+.+++||..||++| |++|+.+|..++|+|++|++|++|+|.+|+++++++|++.+|+|+||
T Consensus       481 yv~~wE~~~~-----~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR  555 (581)
T 4epl_A          481 YAIFWEISGE-----TNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPR  555 (581)
T ss_dssp             EEEEEEESSC-----CCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCS
T ss_pred             EEEEEeecCC-----CCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCe
Confidence            9999999642     45678999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             cc--CCHhHHHHHhccceEEEe
Q 009765          501 IV--RNREIVEFMEGCSLVTVR  520 (526)
Q Consensus       501 ~~--~~~~~~~~l~~~~~~~~~  520 (526)
                      |+  ++++++++|+++|+++-.
T Consensus       556 ~~~~~~~~~~~~L~~~v~~~~~  577 (581)
T 4epl_A          556 CVKPSNAKVLQILCENVVSSYF  577 (581)
T ss_dssp             SCCTTCHHHHHHHHTTEEEEEE
T ss_pred             eecCCCHHHHHHHHhccccccc
Confidence            99  999999999999998654
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Back     alignment and structure
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Back     alignment and structure
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Back     alignment and structure
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Back     alignment and structure
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
d1pg4a_643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 99.34
d1lcia_541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 99.17
d1ry2a_640 Acetyl-CoA synthetase {Baker's yeast (Saccharomyce 99.01
d1amua_514 Phenylalanine activating domain of gramicidin synt 98.9
d3cw9a1503 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId 98.61
d1mdba_536 Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil 98.58
d1v25a_534 Long chain fatty acid-CoA ligase TT0168 {Thermus t 98.47
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.34  E-value=4.3e-11  Score=130.58  Aligned_cols=223  Identities=15%  Similarity=0.104  Sum_probs=120.2

Q ss_pred             CCCceEEEEecCch---hhhHHHHHHHhC--CCCeeccccccCCce-eee-ecCCCCCCCCc-ceecCCCceEEEeeeCC
Q 009765          243 PNVRYIKCVTTGSM---SQYCSKIKYYAG--EVPVLGGDYFASECY-VGI-NLDIAQPPQTT-RFVMLPTAAYFEFLPFD  314 (526)
Q Consensus       243 P~L~~i~~~~~G~~---~~y~~~l~~~~g--~v~v~~~~Y~aSEg~-i~i-~~~~~~~~~~~-~~~l~~~~~f~EFip~~  314 (526)
                      +.|+   .+.+||.   ....+.+.+.+|  +++++ ++||.||.. +.+ +.....+...+ .....++ .-+..++.+
T Consensus       374 ~sLr---~i~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g-~~v~ivd~~  448 (643)
T d1pg4a_         374 SSLR---ILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATRPFFG-VQPALVDNE  448 (643)
T ss_dssp             TTCC---EEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTT-CCEEEECTT
T ss_pred             CceE---EEEEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCccccccCC-CEEEEECCC
Confidence            5677   3344432   344566777775  48999 999999963 222 11111110001 1112333 234566643


Q ss_pred             CCCccccCCceeccccccCCceEEEEEccC-----CCee----------------cceeCCEEEEeeecCCCCEEEEeee
Q 009765          315 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFVMR  373 (526)
Q Consensus       315 ~~~~~~~~~~~l~l~ele~G~~yelVvTt~-----~GL~----------------RYr~GDvV~v~g~~~~~P~i~f~gR  373 (526)
                              +     .+++.|+.+||+|+..     .|+|                -|+|||++++.    ..-.+.|+||
T Consensus       449 --------g-----~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d----~dG~l~i~GR  511 (643)
T d1pg4a_         449 --------G-----HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD----EDGYYWITGR  511 (643)
T ss_dssp             --------C-----CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC----TTSCEEEEEE
T ss_pred             --------C-----CCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEEC----CCceEEEecc
Confidence                    2     3467899999999863     2222                28899999987    3457999999


Q ss_pred             CCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEe--ecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHH
Q 009765          374 APK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGY--TNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSS  448 (526)
Q Consensus       374 ~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~--~~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~~~  448 (526)
                      .++   +.|++++..+|+++|.+.       .+  +.+-+|+  .+... ....+.||.+..+   ...+.+..+++.+.
T Consensus       512 ~dd~ik~~G~ri~p~eIE~~l~~~-------p~--V~eaaVvg~~d~~~-ge~~~a~Vv~~~~---~~~~~~~~~~i~~~  578 (643)
T d1pg4a_         512 VDDVLNVSGHRLGTAEIESALVAH-------PK--IAEAAVVGIPHAIK-GQAIYAYVTLNHG---EEPSPELYAEVRNW  578 (643)
T ss_dssp             SSSEEEETTEEEEHHHHHHHHHHS-------TT--EEEEEEEEEEETTT-EEEEEEEEEECTT---CCCCHHHHHHHHHH
T ss_pred             cccEEEECCEEECHHHHHHHHHhC-------CC--cceEEEEEEECCCC-CeEEEEEEEECCC---CCCCHHHHHHHHHH
Confidence            999   789999999999988753       23  4454433  22211 2244578877643   22333333334444


Q ss_pred             HHHHhChhHHhhhhcCCCCCcEEEEeCC------Cc--HHHHHHHHHHcCCCCCCCCCCcccCCHhHHHHHh
Q 009765          449 LEDAFGSIYKVQRDRGEISPLSVSIVKP------GT--FDRLLQVAIEKGAPASQYKPPKIVRNREIVEFME  512 (526)
Q Consensus       449 ld~~Ln~~Y~~~R~~~~l~p~~v~~v~~------g~--f~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~  512 (526)
                      +.++|.+         .-.|-.|.+|+.      |-  -..+++.  ..|. ..+.+.+--+.|++.++.+.
T Consensus       579 ~~~~L~~---------~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~--~~~~-~~~~~~~~t~~~p~~l~~~~  638 (643)
T d1pg4a_         579 VRKEIGP---------LATPDVLHWTDSLPKTRSGKIMRRILRKI--AAGD-TSNLGDTSTLADPGVVEKLL  638 (643)
T ss_dssp             HHHHTCG---------GGCCSEEEECSCCCBCTTSCBCHHHHHHH--HHTC-----------CCTTHHHHHH
T ss_pred             HHhhCCc---------ccCccEEEEECCCCCCCCcCccHHHHHHH--hcCC-ccccCCccccCChHHHHHHH
Confidence            4444421         235667777752      31  1222222  2332 22344455577777776554
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure