Citrus Sinensis ID: 009775
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 526 | 2.2.26 [Sep-21-2011] | |||||||
| A7SDW5 | 525 | Eukaryotic translation in | N/A | no | 0.939 | 0.940 | 0.449 | 1e-131 | |
| Q7T2A5 | 576 | Eukaryotic translation in | yes | no | 0.973 | 0.888 | 0.429 | 1e-128 | |
| Q8AVJ0 | 562 | Eukaryotic translation in | N/A | no | 0.967 | 0.905 | 0.430 | 1e-128 | |
| Q6P878 | 562 | Eukaryotic translation in | yes | no | 0.967 | 0.905 | 0.432 | 1e-128 | |
| Q9Y262 | 564 | Eukaryotic translation in | yes | no | 0.971 | 0.906 | 0.428 | 1e-127 | |
| Q8QZY1 | 564 | Eukaryotic translation in | yes | no | 0.971 | 0.906 | 0.428 | 1e-127 | |
| A5A6M4 | 564 | Eukaryotic translation in | yes | no | 0.971 | 0.906 | 0.427 | 1e-127 | |
| Q3ZCK1 | 564 | Eukaryotic translation in | yes | no | 0.971 | 0.906 | 0.427 | 1e-127 | |
| Q5F428 | 564 | Eukaryotic translation in | yes | no | 0.967 | 0.902 | 0.432 | 1e-127 | |
| Q4PF85 | 668 | Eukaryotic translation in | N/A | no | 0.912 | 0.718 | 0.414 | 1e-115 |
| >sp|A7SDW5|EIF3L_NEMVE Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1 | Back alignment and function desciption |
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Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/527 (44%), Positives = 350/527 (66%), Gaps = 33/527 (6%)
Query: 8 YEDAPADYDGSADARASSQDLGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQ 67
YED + Y G D S + VP+ +K F+ ++H+ E+N+YEI +YE F
Sbjct: 15 YEDDYSGYQGDGDDSVGSYN-------VPEEIKRFIHFFHQHVLEQNLYEIQSIYENGFN 67
Query: 68 SLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCS 127
L+DR F TPWP + +A V D VF +LY+E+++RH+Y +L PT++QR +S+ NYC
Sbjct: 68 KLTDRYFNKTPWPEAEFIAPLVSGDQVFLILYKELYYRHIYNKLKPTVEQRFESYYNYCD 127
Query: 128 LFQVVLHG--VVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAW 185
LF +L+ V + LPNQWLWD++DEF+YQFQ+F Q+R+K++NK E EI +LR + W
Sbjct: 128 LFNYILNTDEPVPLTLPNQWLWDIIDEFIYQFQAFSQFRSKLQNKPEDEIDVLRANSKIW 187
Query: 186 NVYGVLNFLQALVEKSMIIQILEREKEGLEQFTATDGYDYNGGS----NVLKVLGYFSMV 241
N++ VLN L +LVEKS I LE + D G + K+LGYFS++
Sbjct: 188 NIHSVLNVLYSLVEKSRI-------NYQLEMYNTNGNPDEVSGEFGIHPLYKMLGYFSLI 240
Query: 242 GLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIRE 301
GLLR+H LLGDY +K L +++T+ +Y+ + ITT Y+ GFA LM+RRY DAIR
Sbjct: 241 GLLRLHSLLGDYFQAIKVLSNVELTRNTMYSRIPACQITTYYYVGFAYLMMRRYQDAIRC 300
Query: 302 FNKILLYIYKTKQYHQ-KSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREK 360
F+ +LLYI +TK Q KS QYE+I+KKN+QMY LLAI L+LCPQ ++E V+SQLREK
Sbjct: 301 FSSVLLYIQRTKNMLQTKSYQYEEIMKKNDQMYNLLAIALTLCPQ--QLDENVHSQLREK 358
Query: 361 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYE 420
EKM ++Q+ D +++E FSY+CPKF++P P+F+ P NYN++ + LQLK+F+ E
Sbjct: 359 CTEKMQKLQKGD---LQMFEECFSYSCPKFVSPVPPNFDAPPANYNREPFNLQLKVFMNE 415
Query: 421 VKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-D 473
V QQ ++ +RS+LK+Y+++ +++LA ++++DE T R L+ YKHK T D D
Sbjct: 416 VAQQSMIPVIRSYLKLYTTMPIAKLAAFLDMDEATFRNQLLCYKHKQRNLVWTKGTDGLD 475
Query: 474 GKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDL 520
G+ S+++VDFYID +MIH+ ++K +RYG+FF+RQI K + + +L
Sbjct: 476 GEQQSSSEVDFYIDRDMIHIADTKVDRRYGEFFMRQIYKFDEMARNL 522
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Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. Nematostella vectensis (taxid: 45351) |
| >sp|Q7T2A5|EIF3L_DANRE Eukaryotic translation initiation factor 3 subunit L OS=Danio rerio GN=eif3l PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8AVJ0|EIF3L_XENLA Eukaryotic translation initiation factor 3 subunit L OS=Xenopus laevis GN=eif3l PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6P878|EIF3L_XENTR Eukaryotic translation initiation factor 3 subunit L OS=Xenopus tropicalis GN=eif3l PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Y262|EIF3L_HUMAN Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8QZY1|EIF3L_MOUSE Eukaryotic translation initiation factor 3 subunit L OS=Mus musculus GN=Eif3l PE=1 SV=1 | Back alignment and function description |
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| >sp|A5A6M4|EIF3L_PANTR Eukaryotic translation initiation factor 3 subunit L OS=Pan troglodytes GN=EIF3L PE=2 SV=1 | Back alignment and function description |
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| >sp|Q3ZCK1|EIF3L_BOVIN Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus GN=EIF3L PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5F428|EIF3L_CHICK Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus GN=EIF3L PE=2 SV=1 | Back alignment and function description |
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| >sp|Q4PF85|EIF3L_USTMA Eukaryotic translation initiation factor 3 subunit L OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UM01228 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 526 | ||||||
| 356507889 | 514 | PREDICTED: eukaryotic translation initia | 0.952 | 0.974 | 0.914 | 0.0 | |
| 225430007 | 517 | PREDICTED: eukaryotic translation initia | 0.980 | 0.998 | 0.879 | 0.0 | |
| 356515579 | 516 | PREDICTED: eukaryotic translation initia | 0.948 | 0.967 | 0.915 | 0.0 | |
| 224141781 | 519 | predicted protein [Populus trichocarpa] | 0.984 | 0.998 | 0.874 | 0.0 | |
| 449436868 | 528 | PREDICTED: eukaryotic translation initia | 0.994 | 0.990 | 0.895 | 0.0 | |
| 358344629 | 511 | Eukaryotic translation initiation factor | 0.969 | 0.998 | 0.874 | 0.0 | |
| 297808591 | 521 | hypothetical protein ARALYDRAFT_489426 [ | 0.988 | 0.998 | 0.839 | 0.0 | |
| 224089052 | 466 | predicted protein [Populus trichocarpa] | 0.885 | 1.0 | 0.916 | 0.0 | |
| 22327068 | 514 | RNA polymerase I-associated factor PAF67 | 0.973 | 0.996 | 0.830 | 0.0 | |
| 23397253 | 514 | unknown protein [Arabidopsis thaliana] | 0.973 | 0.996 | 0.828 | 0.0 |
| >gi|356507889|ref|XP_003522695.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Glycine max] | Back alignment and taxonomy information |
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Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/501 (91%), Positives = 490/501 (97%)
Query: 26 QDLGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAV 85
Q+LGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYE+SFQ+LS+RLFKDTPWPSVDAV
Sbjct: 14 QELGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYESSFQTLSERLFKDTPWPSVDAV 73
Query: 86 AHYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLHGVVNMQLPNQW 145
AHYVDNDHVFCLLYREMWFRHLYARL+PTL+QRIDSWDNYCSLFQVVLHGVVNMQLPNQW
Sbjct: 74 AHYVDNDHVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQW 133
Query: 146 LWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMIIQ 205
LWDMVDEFVYQFQSFCQYRAKMK+KTEQEIALLRQ+DQAWNV+GVLNFLQALVEKS IIQ
Sbjct: 134 LWDMVDEFVYQFQSFCQYRAKMKSKTEQEIALLRQFDQAWNVFGVLNFLQALVEKSAIIQ 193
Query: 206 ILEREKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDI 265
ILE+EKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCL PIDI
Sbjct: 194 ILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLLPIDI 253
Query: 266 TQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQKSPQYEQI 325
TQQGVYTSVIGSHITTIYHYGFANLMLRRYV+AIREFNKILLYI+KTKQYHQKSPQYEQI
Sbjct: 254 TQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIFKTKQYHQKSPQYEQI 313
Query: 326 LKKNEQMYALLAICLSLCPQVKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSY 385
LKKNEQMYALLAI LSLCPQ + V+ETVNSQLREKYGEKM+RMQRYDDEAF+IYDELFSY
Sbjct: 314 LKKNEQMYALLAISLSLCPQSRLVDETVNSQLREKYGEKMVRMQRYDDEAFAIYDELFSY 373
Query: 386 ACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSEL 445
ACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYE KQQQLLSGVR+FLKVYS++ L++L
Sbjct: 374 ACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGVRTFLKVYSTISLTKL 433
Query: 446 ATYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYIDDNMIHVVESKPVKRYGDF 505
A+YMEVDEPTLRTILMTYKHKTHAVDSDGKITSNAD+DFYIDD+ IHV+ESKP KRYGD+
Sbjct: 434 ASYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADLDFYIDDDTIHVMESKPAKRYGDY 493
Query: 506 FLRQIAKLEGLINDLDRVRLD 526
FLRQI KLEG+IN++D ++L+
Sbjct: 494 FLRQIVKLEGVINEMDGIKLE 514
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430007|ref|XP_002284115.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356515579|ref|XP_003526476.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224141781|ref|XP_002324243.1| predicted protein [Populus trichocarpa] gi|222865677|gb|EEF02808.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449436868|ref|XP_004136214.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Cucumis sativus] gi|449508023|ref|XP_004163195.1| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|358344629|ref|XP_003636390.1| Eukaryotic translation initiation factor 3 subunit L [Medicago truncatula] gi|355502325|gb|AES83528.1| Eukaryotic translation initiation factor 3 subunit L [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297808591|ref|XP_002872179.1| hypothetical protein ARALYDRAFT_489426 [Arabidopsis lyrata subsp. lyrata] gi|297318016|gb|EFH48438.1| hypothetical protein ARALYDRAFT_489426 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224089052|ref|XP_002308615.1| predicted protein [Populus trichocarpa] gi|222854591|gb|EEE92138.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|22327068|ref|NP_680222.1| RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] gi|22327070|ref|NP_680223.1| RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] gi|332006097|gb|AED93480.1| RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] gi|332006098|gb|AED93481.1| RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|23397253|gb|AAN31908.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 526 | ||||||
| TAIR|locus:504956415 | 514 | AT5G25754 "AT5G25754" [Arabido | 0.973 | 0.996 | 0.830 | 2.2e-240 | |
| TAIR|locus:504955153 | 514 | AT5G25757 "AT5G25757" [Arabido | 0.973 | 0.996 | 0.830 | 2.2e-240 | |
| ZFIN|ZDB-GENE-040426-2138 | 576 | eif3s6ip "eukaryotic translati | 0.887 | 0.810 | 0.466 | 5.1e-123 | |
| UNIPROTKB|Q8AVJ0 | 562 | eif3l "Eukaryotic translation | 0.882 | 0.825 | 0.464 | 1.1e-122 | |
| UNIPROTKB|Q6P878 | 562 | eif3l "Eukaryotic translation | 0.882 | 0.825 | 0.469 | 1.7e-122 | |
| UNIPROTKB|Q9Y262 | 564 | EIF3L "Eukaryotic translation | 0.882 | 0.822 | 0.466 | 3.5e-122 | |
| UNIPROTKB|F1PHR6 | 564 | EIF3L "Uncharacterized protein | 0.882 | 0.822 | 0.466 | 4.5e-122 | |
| UNIPROTKB|G3V7G9 | 564 | Eif3s6ip "Eukaryotic translati | 0.882 | 0.822 | 0.469 | 5.8e-122 | |
| UNIPROTKB|F1ND80 | 575 | EIF3L "Eukaryotic translation | 0.882 | 0.806 | 0.471 | 9.4e-122 | |
| UNIPROTKB|Q5F428 | 564 | EIF3L "Eukaryotic translation | 0.882 | 0.822 | 0.471 | 9.4e-122 |
| TAIR|locus:504956415 AT5G25754 "AT5G25754" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2317 (820.7 bits), Expect = 2.2e-240, P = 2.2e-240
Identities = 436/525 (83%), Positives = 485/525 (92%)
Query: 3 AASYDYEDAPADYDGSADARASSQDLGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMY 62
A+S +YE+ P + ++ GYDPN VPDSVKSFV H+YRHIR+KNVYEIHQM
Sbjct: 2 ASSNEYEEGPGE-----------RESGYDPNMVPDSVKSFVSHMYRHIRDKNVYEIHQMC 50
Query: 63 ETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSW 122
ETSFQS+S+RLFKDTPWPSV+A+A YVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDS+
Sbjct: 51 ETSFQSISERLFKDTPWPSVEAIAPYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSY 110
Query: 123 DNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYD 182
DNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQ+RAK+KNKTE+EIALLRQ+D
Sbjct: 111 DNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQHD 170
Query: 183 QAWNVYGVLNFLQALVEKSMIIQILEREKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVG 242
+AWNVYGVLNFLQALVEKS IIQILE +K+GLE FT TDGYD++GGSNVLKVLGYFSMVG
Sbjct: 171 KAWNVYGVLNFLQALVEKSCIIQILEHDKDGLE-FTETDGYDFSGGSNVLKVLGYFSMVG 229
Query: 243 LLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREF 302
LLRVHCLLGDYHT LK LQPIDITQ GVYTSVIG HI TIYHYGFA LMLRRYVDA+REF
Sbjct: 230 LLRVHCLLGDYHTALKWLQPIDITQPGVYTSVIGCHIATIYHYGFATLMLRRYVDAVREF 289
Query: 303 NKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETVNSQLREKYG 362
NKILLYI+KTKQYHQKSPQYEQ+LKKNEQMYALLA+ LSLCPQ K V+E+VNSQLR+KYG
Sbjct: 290 NKILLYIFKTKQYHQKSPQYEQLLKKNEQMYALLALSLSLCPQTKLVDESVNSQLRDKYG 349
Query: 363 EKMIRMQRYDDEAFSIYDELFSYACPKFITPSAP-SFEEPLVNYNQDAYRLQLKLFLYEV 421
EKM+RM R DDEAF IYDELFSYACPKFITPSAP +FEEPLVNYNQDAYRLQLK+FLYEV
Sbjct: 350 EKMMRMLRSDDEAFGIYDELFSYACPKFITPSAPPTFEEPLVNYNQDAYRLQLKMFLYEV 409
Query: 422 KQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNAD 481
KQQQLLSGVR+FLKVYSS+ L++LA YMEVDEPTLRTIL+TYKHKTH+VDSDG+I SNAD
Sbjct: 410 KQQQLLSGVRTFLKVYSSISLAKLANYMEVDEPTLRTILLTYKHKTHSVDSDGRIISNAD 469
Query: 482 VDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRVRLD 526
+DF+I+++MI+VVESKP KRYGDFFLRQIAKLEG+IND+DRV+L+
Sbjct: 470 IDFFINNDMIYVVESKPAKRYGDFFLRQIAKLEGVINDMDRVKLE 514
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| TAIR|locus:504955153 AT5G25757 "AT5G25757" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-2138 eif3s6ip "eukaryotic translation initiation factor 3, subunit 6 interacting protein" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8AVJ0 eif3l "Eukaryotic translation initiation factor 3 subunit L" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6P878 eif3l "Eukaryotic translation initiation factor 3 subunit L" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y262 EIF3L "Eukaryotic translation initiation factor 3 subunit L" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PHR6 EIF3L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3V7G9 Eif3s6ip "Eukaryotic translation initiation factor 3, subunit 6 interacting protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1ND80 EIF3L "Eukaryotic translation initiation factor 3 subunit L" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5F428 EIF3L "Eukaryotic translation initiation factor 3 subunit L" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5F428 | EIF3L_CHICK | No assigned EC number | 0.4321 | 0.9676 | 0.9024 | yes | no |
| A5A6M4 | EIF3L_PANTR | No assigned EC number | 0.4270 | 0.9714 | 0.9060 | yes | no |
| Q7Q5Y8 | EIF3L_ANOGA | No assigned EC number | 0.4195 | 0.9657 | 0.9424 | yes | no |
| Q9VTU4 | EIF3L_DROME | No assigned EC number | 0.4217 | 0.9543 | 0.9313 | yes | no |
| Q2M0S3 | EIF3L_DROPS | No assigned EC number | 0.4124 | 0.9429 | 0.9168 | yes | no |
| Q7T2A5 | EIF3L_DANRE | No assigned EC number | 0.4290 | 0.9733 | 0.8888 | yes | no |
| Q6CAE9 | EIF3L_YARLI | No assigned EC number | 0.3613 | 0.8555 | 0.8653 | yes | no |
| Q95QW0 | EIF3L_CAEEL | No assigned EC number | 0.3547 | 0.9467 | 0.9273 | yes | no |
| Q8QZY1 | EIF3L_MOUSE | No assigned EC number | 0.4288 | 0.9714 | 0.9060 | yes | no |
| Q3ZCK1 | EIF3L_BOVIN | No assigned EC number | 0.4270 | 0.9714 | 0.9060 | yes | no |
| Q6P878 | EIF3L_XENTR | No assigned EC number | 0.4321 | 0.9676 | 0.9056 | yes | no |
| Q9Y262 | EIF3L_HUMAN | No assigned EC number | 0.4288 | 0.9714 | 0.9060 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 526 | |||
| pfam10255 | 402 | pfam10255, Paf67, RNA polymerase I-associated fact | 0.0 |
| >gnl|CDD|220655 pfam10255, Paf67, RNA polymerase I-associated factor PAF67 | Back alignment and domain information |
|---|
Score = 541 bits (1396), Expect = 0.0
Identities = 211/409 (51%), Positives = 291/409 (71%), Gaps = 19/409 (4%)
Query: 117 QRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQE 174
R +SWDNYC LF +L+ G V ++LPN WLWD++DEFVYQFQSFCQYR ++KNKTE+E
Sbjct: 2 DRFESWDNYCDLFNYLLNSQGPVELELPNSWLWDIIDEFVYQFQSFCQYRKRLKNKTEEE 61
Query: 175 IALLRQYDQ-AWNVYGVLNFLQALVEKSMIIQILEREKEGLEQFTATDGYDYNGGSNVLK 233
I L + D WNVY VLN L +LV+KS I + LE EK G + D Y G SN+ K
Sbjct: 62 IQELDENDPDVWNVYSVLNVLYSLVDKSQIFEQLEAEKAGEDPSEVADEY---GSSNLYK 118
Query: 234 VLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYTSVIGSHITTIYHYGFANLMLR 293
+LGYFS++GLLRVH LLGDY+ LK L+PID++++G+Y+ V ++++ Y+ GFA LMLR
Sbjct: 119 MLGYFSIIGLLRVHVLLGDYYLALKVLEPIDLSKKGLYSKVPAAYVSLYYYVGFAYLMLR 178
Query: 294 RYVDAIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEETV 353
RY DAIR F++IL+YI KTK H +S QY+ I K++E+MYALLAIC L P +E +
Sbjct: 179 RYADAIRVFSQILIYIQKTKYLHTQSYQYDAINKQSEKMYALLAICHVLSPIRL--DENI 236
Query: 354 NSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAP-SFEEPLVNYNQDAYRL 412
+ QL+EKYG+K ++QR D+E F ELFSYACPKFI+P +P F+ N N + +
Sbjct: 237 SQQLKEKYGDKFYKLQRGDEEVF---RELFSYACPKFISPISPPDFDGDEQNKNTEPLQR 293
Query: 413 QLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAV-- 470
QL+LFL EVKQQQ ++ +RS+LK+Y+++ L +LA+ ++VD+ LR+ L+ YKHK+ +
Sbjct: 294 QLQLFLKEVKQQQDINKLRSYLKLYTTITLEKLASLLDVDDEELRSQLLAYKHKSRQLEW 353
Query: 471 -----DSDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLE 514
G+ S++D+DFYID +MIH+ E+K KRYGDFF+RQI K +
Sbjct: 354 SSGASLLSGEFVSSSDLDFYIDGDMIHIKETKVQKRYGDFFIRQINKCK 402
|
RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans. Length = 402 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 526 | |||
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 100.0 | |
| KOG3677 | 525 | consensus RNA polymerase I-associated factor - PAF | 100.0 | |
| KOG3677 | 525 | consensus RNA polymerase I-associated factor - PAF | 96.94 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.83 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.51 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.11 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.9 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 92.53 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 92.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 92.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 90.17 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 89.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 89.66 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 89.41 | |
| smart00088 | 88 | PINT motif in proteasome subunits, Int-6, Nip-1 an | 89.37 | |
| smart00753 | 88 | PAM PCI/PINT associated module. | 89.37 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 88.6 | |
| PF01399 | 105 | PCI: PCI domain; InterPro: IPR000717 A homology do | 87.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 87.28 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 86.99 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 86.23 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.5 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.17 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 82.01 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 81.09 |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-158 Score=1238.77 Aligned_cols=391 Identities=60% Similarity=1.045 Sum_probs=384.7
Q ss_pred HhHHhHHHhHHHHHHHHhc--CCcccCCchhHHHHhhhHHHhhhcchhhhhhcccCCCHHHHHHHhhc-CCCcchHHHHH
Q 009775 116 KQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQY-DQAWNVYGVLN 192 (526)
Q Consensus 116 ~dR~~Sw~nYc~LF~~lL~--g~v~l~LPn~WlWDiiDEFVYQfQsfc~yR~k~~~k~~eei~~l~~~-~~vW~~~~VLn 192 (526)
|||++||+|||+|||+||+ ||++|+|||+||||||||||||||||||||+|++++++||++.|+++ |++|+|++|||
T Consensus 1 EdR~~Sw~nYc~LF~~iL~s~~p~~l~LPn~WlwDiiDEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLn 80 (404)
T PF10255_consen 1 EDRFESWDNYCELFNYILNSDGPVNLELPNQWLWDIIDEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLN 80 (404)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcccCCCcHHHHHHHHHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHH
Confidence 6999999999999999997 88999999999999999999999999999999999999999999988 89999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhccCCcccccCCccCCCCchhhHhhhHHHHHHHHHHHhhcccHHHHhhhccCcccCCccccc
Q 009775 193 FLQALVEKSMIIQILEREKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDITQQGVYT 272 (526)
Q Consensus 193 ~L~sLv~kS~I~e~L~~~~~g~~~~~~a~~~~~~g~~~l~~mLGYFSlIGLlRvh~LLGDY~~ALk~L~~Idl~~k~l~~ 272 (526)
+|||||+||+|++||+++++|++|++++|+| |++|+||||||||+|||||||||||||++|||+|+|||++++++||
T Consensus 81 vL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~---g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~ 157 (404)
T PF10255_consen 81 VLYSLVDKSQINEQLEAEKRGEDPDEVAGEY---GSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYT 157 (404)
T ss_pred HHHHHHHHHhHHHHHHHhhccCCchhhhccc---ccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc-ccccCChhHHHHhhHHHHHHHHHHHHHhhCCCCcchhh
Q 009775 273 SVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTK-QYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKHVEE 351 (526)
Q Consensus 273 ~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k-~~~~ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~~lDe 351 (526)
+||+|||||+||+||||||||||+||||+|++||+||+|+| ++++|+||||+|+|++||||+|+|||++|||++ +||
T Consensus 158 ~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~--lde 235 (404)
T PF10255_consen 158 KVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQR--LDE 235 (404)
T ss_pred cCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCC--CCH
Confidence 99999999999999999999999999999999999999999 778999999999999999999999999999987 999
Q ss_pred HHHHHHHHHhhHHHHHhhccChhhhcchHhhhhhcCCCcccCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHHhhhhhhh
Q 009775 352 TVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPS-APSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGV 430 (526)
Q Consensus 352 ~I~~~lrEky~dk~~kmq~Gd~e~f~~~~elF~~acPKFIsp~-~P~~~~~~~n~~~e~~~~Ql~~Fl~eV~~q~~l~~l 430 (526)
+|+++|||||||||.+||+||+++| +|||++||||||+|+ ||+++.|..+++.||+++|+++||+||++|+.+|+|
T Consensus 236 ~i~~~lkeky~ek~~kmq~gd~~~f---~elF~~acPKFIsp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~l 312 (404)
T PF10255_consen 236 SISSQLKEKYGEKMEKMQRGDEEAF---EELFSFACPKFISPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTL 312 (404)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHH---HHHHHhhCCCccCCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999999999999999 999999999999999 888899999999999999999999999999999999
Q ss_pred hhhhhhccccChhHHhcccCCChhHHHHHHHHHhhccccc-ccC-------CceeccCceeEEEeCCeEEEecccccchh
Q 009775 431 RSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAV-DSD-------GKITSNADVDFYIDDNMIHVVESKPVKRY 502 (526)
Q Consensus 431 RsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k~r~l-~~~-------G~~~~~sdlDF~Id~dmIhI~e~k~~r~~ 502 (526)
||||||||||+++|||+|||+|+++||++|||+|||+||+ +|+ |++++++|+|||||+|||||+|+|++|||
T Consensus 313 RSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll~~K~k~~ql~~w~~g~sll~G~~~~~~dlDf~Id~D~IhI~e~k~~r~~ 392 (404)
T PF10255_consen 313 RSYLKLYTTIPLEKLASFLDVDEEELRSQLLCFKHKSRQLVRWSGGASLLDGEFQSSSDLDFYIDGDMIHIAETKVARRY 392 (404)
T ss_pred HHHHHhhcCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCCCcccccceeecCceEEEEeCCEEEEeeccccchh
Confidence 9999999999999999999999999999999999999999 887 89999999999999999999999999999
Q ss_pred HhHHHHHHHHHH
Q 009775 503 GDFFLRQIAKLE 514 (526)
Q Consensus 503 ~d~Fir~i~k~~ 514 (526)
||||+|||+|||
T Consensus 393 ~d~F~r~i~k~e 404 (404)
T PF10255_consen 393 GDFFIRQINKFE 404 (404)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
|
|
| >KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription] | Back alignment and domain information |
|---|
| >KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription] | Back alignment and domain information |
|---|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
| >smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | Back alignment and domain information |
|---|
| >smart00753 PAM PCI/PINT associated module | Back alignment and domain information |
|---|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
| >PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins | Back alignment and domain information |
|---|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 526 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 92/583 (15%), Positives = 166/583 (28%), Gaps = 156/583 (26%)
Query: 45 HLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYV----DNDHVFCLLYR 100
H + H + E Y+ D + V + + + DH+
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 101 EMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLHGVVNMQLPN-QWLWDMVDEFVYQFQS 159
L+ L KQ + Q + V+ N ++L
Sbjct: 61 VSGTLRLFWTL--LSKQE--------EMVQKFVEEVLR---INYKFLMS----------- 96
Query: 160 FCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMIIQILEREKEGLEQFTA 219
+ + + + + Q D+ +N F + V + +Q + ++ L +
Sbjct: 97 --PIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSR---LQPYLKLRQALLELRP 149
Query: 220 TDGYDYNG----GSNVL--KVLGYFSMVGLL--RVHCL-LGDYHTG---LKCLQPIDITQ 267
+G G + V + + + ++ L L + ++ L+ LQ +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 268 QGVYTSVIGSHITTIYHYGFANLMLRR------YVDA------------IREFN---KIL 306
+TS LRR Y + FN KIL
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 307 L---------YIYKTKQYHQKSPQYEQILKKNEQMYALLAICL-----SLCPQVKHVEET 352
L ++ H + L +E +LL L L +V
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPR 328
Query: 353 VNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFE--EPLVNYNQDAY 410
S + E + + + C K T S EP + +
Sbjct: 329 RLSIIAESIRDGLATWDNWKH-----------VNCDKLTTIIESSLNVLEP--AEYRKMF 375
Query: 411 RLQLKLFLYEVK-QQQLLSGV------------------RSFLK------VYS--SLYLS 443
+L +F LLS + S ++ S S+YL
Sbjct: 376 D-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 444 ELATYMEVDEPTL-RTILMTYKHKTHAVDSDGKITSNADVDFYIDDNMI--HVVESKPVK 500
+E L R+I+ Y DSD I D FY + I H+ + +
Sbjct: 435 LKVKLE--NEYALHRSIVDHYN-IPKTFDSDDLIPPYLDQYFY---SHIGHHLKNIEHPE 488
Query: 501 R-------YGDF-FLRQIAKLE----------GLINDLDRVRL 525
R + DF FL Q K+ ++N L +++
Sbjct: 489 RMTLFRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKF 529
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 526 | |||
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 97.61 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.26 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 96.65 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.48 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 95.92 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 95.84 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 95.08 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 94.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 94.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 94.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 94.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 94.22 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 94.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 93.9 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 93.88 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 93.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 93.69 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 93.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 93.52 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 93.51 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 93.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 93.49 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 93.42 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 93.39 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 93.27 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 93.21 | |
| 3t5v_B | 455 | Nuclear mRNA export protein THP1; PCI, mRNA nuclea | 93.11 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 92.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 92.66 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 92.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 92.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 92.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 92.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 92.49 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 92.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 92.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 92.34 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 92.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 92.24 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 92.21 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 92.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 92.0 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 91.82 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 91.76 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 91.71 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 91.38 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 91.35 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 91.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 91.18 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 91.05 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 90.92 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 90.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 90.82 | |
| 3t5x_A | 203 | PCI domain-containing protein 2; PCI, mRNA nuclear | 90.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 90.71 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 90.4 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 90.4 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 90.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 90.26 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 90.09 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 90.0 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 89.92 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 89.6 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 89.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 89.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 89.19 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 89.14 | |
| 1ufm_A | 84 | COP9 complex subunit 4; helix-turn-helix, structur | 88.97 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 88.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 88.86 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 88.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 88.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 88.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 88.6 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 88.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 88.29 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 88.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 88.24 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 88.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 88.02 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 87.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 87.39 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 87.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 87.27 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 87.26 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 86.71 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 86.65 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 86.12 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 86.01 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 86.0 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 85.97 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 85.78 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 85.77 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 85.7 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 85.68 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 85.36 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 85.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 85.19 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 85.19 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 84.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 84.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 84.75 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 84.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 84.72 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 84.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 84.03 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 84.03 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 83.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 83.75 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 83.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 83.64 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 83.49 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 83.06 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 83.03 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 82.95 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 82.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 82.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 82.62 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 82.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 82.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 82.27 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 81.32 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 81.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 81.23 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 80.69 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 80.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 80.55 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 80.15 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 80.01 |
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00034 Score=73.21 Aligned_cols=230 Identities=15% Similarity=0.212 Sum_probs=124.9
Q ss_pred HHHHHHHHhhcccHHHHhhhccCccc--CCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccc
Q 009775 240 MVGLLRVHCLLGDYHTGLKCLQPIDI--TQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILLYIYKTKQYHQ 317 (526)
Q Consensus 240 lIGLlRvh~LLGDY~~ALk~L~~Idl--~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~yi~r~k~~~~ 317 (526)
+.+++|+....||+..|.+.++-+.- .+. ..+.-...+-.+.|-.+|..|+|.+|.+.|..++.. +..
T Consensus 171 ~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~----~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t------~~~ 240 (429)
T 4b4t_R 171 MLTIARLGFFYNDQLYVKEKLEAVNSMIEKG----GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT------FTS 240 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC----CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH------SCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhhcC----CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc------CCc
Confidence 57789999999999999988777642 111 123444567788999999999999999999887642 211
Q ss_pred CChhHHHHhhHHHHHHHHHHHHHhhCCCCc-----chhh-HHHHHHH-HH----hhHHHHHhhccChhhhcchHhhhhhc
Q 009775 318 KSPQYEQILKKNEQMYALLAICLSLCPQVK-----HVEE-TVNSQLR-EK----YGEKMIRMQRYDDEAFSIYDELFSYA 386 (526)
Q Consensus 318 ks~q~d~i~K~~eqMyaLlAIc~~l~P~~~-----~lDe-~I~~~lr-Ek----y~dk~~kmq~Gd~e~f~~~~elF~~a 386 (526)
.+.+....--+|.+ +|..+++.+. .++. .+...+. +. ..+-+..+..++...| .+.....
T Consensus 241 ----~e~~~~~~~~~y~~--l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~---~~~~l~~ 311 (429)
T 4b4t_R 241 ----IELTSYESIATYAS--VTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASY---FPYLLET 311 (429)
T ss_dssp ----SCHHHHHHHHHHHH--HHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHH---HHHHHHH
T ss_pred ----cchhhHHHHHHHHH--HHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHH---HHHHHHH
Confidence 12222222233333 3433444331 1221 1112111 00 1111333444454444 4444455
Q ss_pred CCCcccCCCCCCCCCcCCcchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccChhHHhcccCCChhHHHHHHHHHhhc
Q 009775 387 CPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK 466 (526)
Q Consensus 387 cPKFIsp~~P~~~~~~~n~~~e~~~~Ql~~Fl~eV~~q~~l~~lRsyLKLYtti~l~KLAsfldvd~~~lr~~Ll~~K~k 466 (526)
++.++... | |..+ +...|.++|.. ..++.|++.|++|+++.||..++++++.+...|..+=.
T Consensus 312 ~~~~l~~d-~-~l~~-----------h~~~l~~~ir~----~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~- 373 (429)
T 4b4t_R 312 YANVLIPC-K-YLNR-----------HADFFVREMRR----KVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIP- 373 (429)
T ss_dssp HSTTTTTC-T-TSTT-----------THHHHHHHHHH----HHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHH-
T ss_pred HHhhhccC-H-HHHH-----------HHHHHHHHHHH----HHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHH-
Confidence 55555542 1 2222 23445555544 56889999999999999999999999999887766543
Q ss_pred ccccccCCceeccCceeEEEe--CCeEEEecccc-cchh------HhHHHHHHHHHHHHHH
Q 009775 467 THAVDSDGKITSNADVDFYID--DNMIHVVESKP-VKRY------GDFFLRQIAKLEGLIN 518 (526)
Q Consensus 467 ~r~l~~~G~~~~~sdlDF~Id--~dmIhI~e~k~-~r~~------~d~Fir~i~k~~~~~~ 518 (526)
.+-|+.-|| +++|+...... ...| ||-++..|+|+..+++
T Consensus 374 ------------~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 374 ------------NKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp ------------HTSSCEEEETTTTEEEECC------------------------------
T ss_pred ------------cCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344688888 56888766533 3333 5667777777766654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
| >3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
| >3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 | Back alignment and structure |
|---|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 526 | |||
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 95.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 95.24 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 94.56 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 94.54 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 94.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 92.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 92.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 92.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 92.18 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 91.99 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 91.97 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 91.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 91.61 | |
| d1ufma_ | 84 | COP9 signalosome complex subunit 4, GSN4 {Mouse (M | 91.22 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 91.2 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 90.65 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 90.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 90.07 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 89.69 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 89.41 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 89.16 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 88.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 88.56 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 88.51 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 84.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 83.99 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 83.06 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 83.05 |
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0046 Score=53.69 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcccHHHHhhhccC-cccCCcccccccccceehHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 009775 239 SMVGLLRVHCLLGDYHTGLKCLQP-IDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVDAIREFNKILL 307 (526)
Q Consensus 239 SlIGLlRvh~LLGDY~~ALk~L~~-Idl~~k~l~~~V~~c~Vs~~YyvGFaYlMlrRY~DAir~F~~iL~ 307 (526)
+...+..++.-+|+|..|++.++. |++++ -++..+|..|.||..+++|.+|+..|..++-
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDS---------NNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccc---------cchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345677889999999999998876 45554 4688899999999999999999999999774
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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