Citrus Sinensis ID: 009793

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
MAEKFPIPTYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNNI
ccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccEEccccHHHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEccccccEEccccEEEccccEEEEcccHHHHHHHHHHHHccccccccccccEEEEccccccccccccccccccccccEEEEEEEEccccEEEEccccccHHHHHHcccccccEEEEEEEEEEEEcccEEEEEEEEcccccHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHccccccccccEEEEEcHHHHHHHccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHccccHHHHHHHHHcccccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccccEEcccHHHHHHHHHHccccccccccEEEccccHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEccHHcccccccccccccccEEEccHHHHHHHHHHHHHHccccccccccHcEEcEccEEccccccccccccccccccEEEEEEEEccccEEEEcccccHHHHHHHHccccccEEEEEEEEEcccccHHHEEEEEEEccHHHHHHHHHHHHHcccccccccccEEEEEEEEcccccccccccccccccccHHHHHcccccEEEEEEEEEEccccccccccHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHccccccccccHHcEccHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccHEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHcHHHHHHHHHHHHcccHHHccccccccccc
maekfpiptYIIIILIISRLIstignskpsnilvphklltldigarlhldpaaiksassdygnifkenpvavlypssTEDIVALVKAAynssvpfkiaakgrghsvrgqamaDGGVVVEMMALKnyrngngitvgsgfyadvagEQLWIDVLNATLehglapaswtdYLYLTVGgtlsnagisgqtfrygpqisnvyeldvvtgkgelmtcSALKNSELFYAALGGLGQFGIITRARialepapkrVKWVRMLYSdfssfsrdQEYLISMNGRRQKQALDYLEGTLIMdqgsldnwrssffppsdhpkiisQVKTHAIIYCLEVAKyyddhtqsTLHKELQTLFKGlsylpgfmfekDVSYVEFLNRVrsgelklesqglwevphpwlnlflpksrisdfnkgvfRDIVLKrnittgpvlvypmnrnkwddrmsavipdedvfyTVGFlhssgfdeweafDDQNKEILKFCENAgikvkqylpyhrnkEEWIKHFGSKWNTFAqrkahfdpkmilspgqrifnni
maekfpipTYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIaakgrghsvrgQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIalepapkrvKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVlkrnittgpvlvypmnrnkWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHfdpkmilspgqrifnni
MAEKFpiptyiiiiliisrlistiGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNNI
****FPIPTYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHL**************IFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMI***********
*****PI*TYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFN**
MAEKFPIPTYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNNI
***KFPIPTYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIF***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEKFPIPTYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGSGFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query525 2.2.26 [Sep-21-2011]
Q9LTS3523 Cytokinin dehydrogenase 3 yes no 0.948 0.952 0.587 1e-180
Q67YU0540 Cytokinin dehydrogenase 5 no no 0.952 0.925 0.532 1e-161
Q9FUJ2524 Cytokinin dehydrogenase 4 no no 0.975 0.977 0.525 1e-158
Q9FUJ3501 Cytokinin dehydrogenase 2 no no 0.885 0.928 0.554 1e-153
Q5ZAY9534 Cytokinin dehydrogenase 5 yes no 0.956 0.940 0.518 1e-147
Q6YW50524 Cytokinin dehydrogenase 7 no no 0.929 0.931 0.498 1e-144
Q6YW51527 Cytokinin dehydrogenase 6 no no 0.931 0.927 0.490 1e-140
O22213575 Cytokinin dehydrogenase 1 no no 0.92 0.84 0.487 1e-139
Q9T0N8534 Cytokinin dehydrogenase 1 N/A no 0.929 0.913 0.495 1e-138
Q5Z620550 Cytokinin dehydrogenase 1 no no 0.967 0.923 0.486 1e-138
>sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1 Back     alignment and function desciption
 Score =  632 bits (1630), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/509 (58%), Positives = 388/509 (76%), Gaps = 11/509 (2%)

Query: 17  ISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPS 76
           +S  I+T  + +P NIL  ++        +L    ++++SA++D+G++ K  P AVL PS
Sbjct: 23  LSTPITTNTSPQPWNILSHNEF-----AGKLTSSSSSVESAATDFGHVTKIFPSAVLIPS 77

Query: 77  STEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS 136
           S EDI  L+K +++S + F +AA+G GHS RGQA A  GVVV M ++ N   G  ++  +
Sbjct: 78  SVEDITDLIKLSFDSQLSFPLAARGHGHSHRGQASAKDGVVVNMRSMVNRDRGIKVS-RT 136

Query: 137 GFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNV 196
             Y DV    LWI+VLN TLE GL P SWTDYLYLTVGGTLSN GISGQTFRYGPQI+NV
Sbjct: 137 CLYVDVDAAWLWIEVLNKTLELGLTPVSWTDYLYLTVGGTLSNGGISGQTFRYGPQITNV 196

Query: 197 YELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSD 256
            E+DV+TGKGE+ TCS   NS+LF+A LGGLGQFGIITRARI LE APKR KW+R LY D
Sbjct: 197 LEMDVITGKGEIATCSKDMNSDLFFAVLGGLGQFGIITRARIKLEVAPKRAKWLRFLYID 256

Query: 257 FSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTH 316
           FS F+RDQE +IS     +   +D+LEG++++D G  DNWRS+++PPSDH +I S VK H
Sbjct: 257 FSEFTRDQERVIS-----KTDGVDFLEGSIMVDHGPPDNWRSTYYPPSDHLRIASMVKRH 311

Query: 317 AIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLE 376
            +IYCLEV KYYD+ +Q T+++E++ L   L+++ GFM+EKDV+Y++FLNRVR+GEL L+
Sbjct: 312 RVIYCLEVVKYYDETSQYTVNEEMEELSDSLNHVRGFMYEKDVTYMDFLNRVRTGELNLK 371

Query: 377 SQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAV 436
           S+G W+VPHPWLNLF+PK++IS F+ GVF+ I+L+ NIT+GPVLVYPMNRNKW+DRMSA 
Sbjct: 372 SKGQWDVPHPWLNLFVPKTQISKFDDGVFKGIILRNNITSGPVLVYPMNRNKWNDRMSAA 431

Query: 437 IPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFG 496
           IP+EDVFY VGFL S+GFD WEAFD +N EILKFCE+A + V QYLPYH ++E W++HFG
Sbjct: 432 IPEEDVFYAVGFLRSAGFDNWEAFDQENMEILKFCEDANMGVIQYLPYHSSQEGWVRHFG 491

Query: 497 SKWNTFAQRKAHFDPKMILSPGQRIFNNI 525
            +WN F +RK  +DPKMILSPGQ IF  I
Sbjct: 492 PRWNIFVERKYKYDPKMILSPGQNIFQKI 520
Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: 2
>sp|Q67YU0|CKX5_ARATH Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUJ2|CKX4_ARATH Cytokinin dehydrogenase 4 OS=Arabidopsis thaliana GN=CKX4 PE=1 SV=2 Back     alignment and function description
>sp|Q9FUJ3|CKX2_ARATH Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZAY9|CKX5_ORYSJ Cytokinin dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CKX5 PE=2 SV=1 Back     alignment and function description
>sp|Q6YW50|CKX7_ORYSJ Cytokinin dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CKX7 PE=3 SV=1 Back     alignment and function description
>sp|Q6YW51|CKX6_ORYSJ Cytokinin dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CKX6 PE=3 SV=1 Back     alignment and function description
>sp|O22213|CKX1_ARATH Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1 Back     alignment and function description
>sp|Q9T0N8|CKX1_MAIZE Cytokinin dehydrogenase 1 OS=Zea mays GN=CKX1 PE=1 SV=2 Back     alignment and function description
>sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10 OS=Oryza sativa subsp. japonica GN=CKX10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
224088035529 cytokinin oxidase [Populus trichocarpa] 1.0 0.992 0.724 0.0
255546119529 gulonolactone oxidase, putative [Ricinus 0.996 0.988 0.722 0.0
223046127526 cytokinin oxidase/dehydrogenase [Gossypi 0.994 0.992 0.700 0.0
379056394535 cytokinin dehydrogenase 3-like [Glycine 0.996 0.977 0.676 0.0
356547877535 PREDICTED: cytokinin dehydrogenase 3-lik 0.996 0.977 0.672 0.0
356558359543 PREDICTED: cytokinin dehydrogenase 3-lik 0.998 0.965 0.666 0.0
356532728546 PREDICTED: cytokinin dehydrogenase 3-lik 0.998 0.959 0.671 0.0
357449815540 Cytokinin dehydrogenase [Medicago trunca 0.988 0.961 0.648 0.0
225465421522 PREDICTED: cytokinin dehydrogenase 3 [Vi 0.984 0.990 0.658 0.0
147854879522 hypothetical protein VITISV_042932 [Viti 0.984 0.990 0.656 0.0
>gi|224088035|ref|XP_002308300.1| cytokinin oxidase [Populus trichocarpa] gi|222854276|gb|EEE91823.1| cytokinin oxidase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/529 (72%), Positives = 445/529 (84%), Gaps = 4/529 (0%)

Query: 1   MAEKFPIPTYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSD 60
           MAE   I   ++ IL I+RL ST+G SK    L+P ++ TLD    LH++P AIKS SSD
Sbjct: 1   MAENPTITICLMAILFITRLASTLGKSKSWTGLLPPQIQTLDFARHLHVEPDAIKSVSSD 60

Query: 61  YGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEM 120
           YGNI  ENP AVLYPSS EDI +L+K +YN+  PF +AA+G GHSV GQAMA  GVVV+M
Sbjct: 61  YGNIVHENPAAVLYPSSIEDITSLIKFSYNNYTPFTVAARGHGHSVGGQAMASNGVVVDM 120

Query: 121 MALKNYRNGNGITVGS----GFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGT 176
            +L+N++NG GITV      GFYADV GEQLWIDVL++T+EHG AP SWTDYLYL+VGGT
Sbjct: 121 TSLRNHKNGTGITVSKCPSLGFYADVGGEQLWIDVLHSTMEHGFAPVSWTDYLYLSVGGT 180

Query: 177 LSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRA 236
           LSNAGISG TFRYGPQISNVYE+DVVTGKGEL+TCS+  NSELFYA LGGLGQFGIITRA
Sbjct: 181 LSNAGISGTTFRYGPQISNVYEMDVVTGKGELVTCSSHTNSELFYAVLGGLGQFGIITRA 240

Query: 237 RIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMDQGSLDNW 296
           RIALEPAPKRVKWVRMLYSDFS+F+RDQE LIS+NGR+QK ALDYLEG+L+M QG  +NW
Sbjct: 241 RIALEPAPKRVKWVRMLYSDFSAFTRDQERLISINGRKQKNALDYLEGSLLMAQGPPNNW 300

Query: 297 RSSFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFE 356
           RSSFFP SD PKI+S V  HAIIYCLEVAKYYDD T+  + K+LQ L KGLS++ GFMFE
Sbjct: 301 RSSFFPSSDIPKIMSLVTQHAIIYCLEVAKYYDDGTRHIVDKDLQQLLKGLSFVAGFMFE 360

Query: 357 KDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITT 416
           KDVS+V+FLNRVRSGE KL SQGLW+VPHPWLNLFLPKSRI +FNKGVF D+VLKRNITT
Sbjct: 361 KDVSFVDFLNRVRSGEQKLHSQGLWDVPHPWLNLFLPKSRILEFNKGVFHDLVLKRNITT 420

Query: 417 GPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSGFDEWEAFDDQNKEILKFCENAGI 476
           G VL YPMNR KWDD+MSAVIP+ED+FYTVGFLHSSGF++W+A+D QNK+ILKFC+ AGI
Sbjct: 421 GVVLFYPMNRKKWDDKMSAVIPEEDIFYTVGFLHSSGFNDWQAYDHQNKDILKFCDKAGI 480

Query: 477 KVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNNI 525
           ++KQYLP + + +EWI HFGSKW  F +RKA FDPKM+LSPGQRIFN+I
Sbjct: 481 EIKQYLPLYNSNKEWINHFGSKWRNFRERKAQFDPKMMLSPGQRIFNDI 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546119|ref|XP_002514119.1| gulonolactone oxidase, putative [Ricinus communis] gi|223546575|gb|EEF48073.1| gulonolactone oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|223046127|gb|ACM79256.1| cytokinin oxidase/dehydrogenase [Gossypium hirsutum] gi|251826367|gb|ACT21088.1| cytokinin oxidase/dehydrogenase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|379056394|ref|NP_001243813.1| cytokinin dehydrogenase 3-like [Glycine max] gi|376315492|gb|AFB18642.1| cytokinin dehydrogenase 3 [Glycine max] Back     alignment and taxonomy information
>gi|356547877|ref|XP_003542331.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356558359|ref|XP_003547474.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356532728|ref|XP_003534923.1| PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357449815|ref|XP_003595184.1| Cytokinin dehydrogenase [Medicago truncatula] gi|124359255|gb|ABN05760.1| FAD linked oxidase, N-terminal [Medicago truncatula] gi|355484232|gb|AES65435.1| Cytokinin dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|225465421|ref|XP_002264445.1| PREDICTED: cytokinin dehydrogenase 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147854879|emb|CAN80714.1| hypothetical protein VITISV_042932 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
TAIR|locus:2164615523 CKX3 "cytokinin oxidase 3" [Ar 0.925 0.929 0.599 4.3e-164
TAIR|locus:2018437540 CKX5 "cytokinin oxidase 5" [Ar 0.933 0.907 0.547 1.9e-145
TAIR|locus:2134423524 CKX4 "cytokinin oxidase 4" [Ar 0.912 0.914 0.553 1.1e-144
UNIPROTKB|Q5ZAY9534 CKX5 "Cytokinin dehydrogenase 0.904 0.889 0.544 1.9e-140
TAIR|locus:2050349501 CKX2 "cytokinin oxidase 2" [Ar 0.900 0.944 0.547 2.7e-139
TAIR|locus:2062714575 CKX1 "cytokinin oxidase/dehydr 0.918 0.838 0.490 1.7e-128
UNIPROTKB|Q5JLP4529 CKX4 "Cytokinin dehydrogenase 0.870 0.863 0.505 1.3e-123
TAIR|locus:2087423533 CKX6 "cytokinin oxidase/dehydr 0.889 0.876 0.485 3.1e-122
UNIPROTKB|Q4ADV8565 CKX2 "Cytokinin dehydrogenase 0.502 0.467 0.508 4.5e-122
TAIR|locus:1005716173524 CKX7 "cytokinin oxidase 7" [Ar 0.906 0.908 0.464 8.2e-115
TAIR|locus:2164615 CKX3 "cytokinin oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 299/499 (59%), Positives = 382/499 (76%)

Query:    28 KPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKA 87
             +P NIL  H     +   +L    ++++SA++D+G++ K  P AVL PSS EDI  L+K 
Sbjct:    34 QPWNIL-SHN----EFAGKLTSSSSSVESAATDFGHVTKIFPSAVLIPSSVEDITDLIKL 88

Query:    88 AYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVG-SGFYADVAGEQ 146
             +++S + F +AA+G GHS RGQA A  GVVV M ++ N     GI V  +  Y DV    
Sbjct:    89 SFDSQLSFPLAARGHGHSHRGQASAKDGVVVNMRSMVN--RDRGIKVSRTCLYVDVDAAW 146

Query:   147 LWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKG 206
             LWI+VLN TLE GL P SWTDYLYLTVGGTLSN GISGQTFRYGPQI+NV E+DV+TGKG
Sbjct:   147 LWIEVLNKTLELGLTPVSWTDYLYLTVGGTLSNGGISGQTFRYGPQITNVLEMDVITGKG 206

Query:   207 ELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEY 266
             E+ TCS   NS+LF+A LGGLGQFGIITRARI LE APKR KW+R LY DFS F+RDQE 
Sbjct:   207 EIATCSKDMNSDLFFAVLGGLGQFGIITRARIKLEVAPKRAKWLRFLYIDFSEFTRDQER 266

Query:   267 LISMNGRRQKQALDYLEGTLIMDQGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVAK 326
             +IS     +   +D+LEG++++D G  DNWRS+++PPSDH +I S VK H +IYCLEV K
Sbjct:   267 VIS-----KTDGVDFLEGSIMVDHGPPDNWRSTYYPPSDHLRIASMVKRHRVIYCLEVVK 321

Query:   327 YYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHP 386
             YYD+ +Q T+++E++ L   L+++ GFM+EKDV+Y++FLNRVR+GEL L+S+G W+VPHP
Sbjct:   322 YYDETSQYTVNEEMEELSDSLNHVRGFMYEKDVTYMDFLNRVRTGELNLKSKGQWDVPHP 381

Query:   387 WLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTV 446
             WLNLF+PK++IS F+ GVF+ I+L+ NIT+GPVLVYPMNRNKW+DRMSA IP+EDVFY V
Sbjct:   382 WLNLFVPKTQISKFDDGVFKGIILRNNITSGPVLVYPMNRNKWNDRMSAAIPEEDVFYAV 441

Query:   447 GFLHSSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRK 506
             GFL S+GFD WEAFD +N EILKFCE+A + V QYLPYH ++E W++HFG +WN F +RK
Sbjct:   442 GFLRSAGFDNWEAFDQENMEILKFCEDANMGVIQYLPYHSSQEGWVRHFGPRWNIFVERK 501

Query:   507 AHFDPKMILSPGQRIFNNI 525
               +DPKMILSPGQ IF  I
Sbjct:   502 YKYDPKMILSPGQNIFQKI 520
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009690 "cytokinin metabolic process" evidence=IEA
GO:0009823 "cytokinin catabolic process" evidence=ISS;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0019139 "cytokinin dehydrogenase activity" evidence=IEA;ISS;TAS
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008131 "primary amine oxidase activity" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
TAIR|locus:2018437 CKX5 "cytokinin oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134423 CKX4 "cytokinin oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZAY9 CKX5 "Cytokinin dehydrogenase 5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2050349 CKX2 "cytokinin oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062714 CKX1 "cytokinin oxidase/dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JLP4 CKX4 "Cytokinin dehydrogenase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2087423 CKX6 "cytokinin oxidase/dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4ADV8 CKX2 "Cytokinin dehydrogenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:1005716173 CKX7 "cytokinin oxidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZAY9CKX5_ORYSJ1, ., 5, ., 9, 9, ., 1, 20.51870.95610.9400yesno
Q9LTS3CKX3_ARATH1, ., 5, ., 9, 9, ., 1, 20.58740.94850.9521yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.5.99.120.946
3rd Layer1.5.990.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VI.977.1
cytokinin oxidase (EC-1.5.99.12) (488 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
PLN02441525 PLN02441, PLN02441, cytokinin dehydrogenase 0.0
pfam09265280 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1 1e-152
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 1e-30
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 8e-26
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 7e-09
TIGR01677557 TIGR01677, pln_FAD_oxido, plant-specific FAD-depen 5e-07
PRK13905298 PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamin 1e-06
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 5e-06
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 2e-05
COG0812291 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase 8e-05
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 1e-04
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 1e-04
TIGR01676541 TIGR01676, GLDHase, galactonolactone dehydrogenase 4e-04
>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase Back     alignment and domain information 
 Score =  919 bits (2378), Expect = 0.0
 Identities = 315/529 (59%), Positives = 393/529 (74%), Gaps = 13/529 (2%)

Query: 2   AEKFPIPTYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDY 61
           A+   +   +++IL +S L S++G     + L+P     L +   L  DP +  SAS D+
Sbjct: 1   AKSLMLSLRLLLILFLSSLTSSVGLCSSPSSLLP---KLLSLDGHLSFDPVSTASASKDF 57

Query: 62  GNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMM 121
           GN+    P AVLYPSS EDI +LV+AAY SS P  +AA+G GHS+ GQA A GGVVV+M 
Sbjct: 58  GNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPGGVVVDMR 117

Query: 122 ALKNYRNGNGITVGSG--FYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSN 179
           +L+    G  + V SG   Y DV+G +LWIDVL ATL+HGLAP SWTDYLYLTVGGTLSN
Sbjct: 118 SLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSN 177

Query: 180 AGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIA 239
           AGISGQ FR+GPQISNV ELDVVTGKGE++TCS  +NS+LF+A LGGLGQFGIITRARIA
Sbjct: 178 AGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIA 237

Query: 240 LEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMD-QGSLDNWRS 298
           LEPAPKRV+W+R+LYSDFS+F+RDQE LIS   R  + + DY+EG +I++  G ++NWRS
Sbjct: 238 LEPAPKRVRWIRVLYSDFSTFTRDQERLIS---RPPENSFDYVEGFVIVNRNGLINNWRS 294

Query: 299 SFFPPSDHPKIISQVKTHAIIYCLEVAKYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKD 358
           SFF PSD  +  S      ++YCLEVAKYYD+ T  T+ +E+++L K LS++PG +F  D
Sbjct: 295 SFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIPGLLFTTD 354

Query: 359 VSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGP 418
           VSYV+FL+RV   ELKL S+GLWEVPHPWLNLF+PKSRI+DF+ GVF+ I+L    T GP
Sbjct: 355 VSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILLDG--TNGP 412

Query: 419 VLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSS--GFDEWEAFDDQNKEILKFCENAGI 476
           +LVYP+NR+KWD+R SAVIPDED+FY V  L S+    D+ E    QNKEIL+FCE AGI
Sbjct: 413 ILVYPLNRSKWDNRTSAVIPDEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGI 472

Query: 477 KVKQYLPYHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNNI 525
            VKQYLP++  +EEW +HFG KW TF +RKA FDP  ILSPGQRIFN  
Sbjct: 473 GVKQYLPHYTTQEEWKRHFGPKWETFVRRKAKFDPLAILSPGQRIFNRA 521

Length = 525
>gnl|CDD|204184 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1, FAD and cytokinin binding Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|233524 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>gnl|CDD|237553 PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 525
PLN02441525 cytokinin dehydrogenase 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
KOG1232511 consensus Proteins containing the FAD binding doma 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PRK11183564 D-lactate dehydrogenase; Provisional 100.0
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 100.0
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 100.0
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.94
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.9
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.82
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 99.79
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.78
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.78
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.74
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.72
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.64
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.63
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.61
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.55
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.39
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.04
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 97.4
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 97.38
PLN00107257 FAD-dependent oxidoreductase; Provisional 97.21
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 96.83
PRK09799258 putative oxidoreductase; Provisional 96.74
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 96.54
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 96.04
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 95.76
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 95.11
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 94.8
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 92.67
PLN00192 1344 aldehyde oxidase 92.53
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 92.43
COG1319284 CoxM Aerobic-type carbon monoxide dehydrogenase, m 92.02
PLN02906 1319 xanthine dehydrogenase 91.97
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.9e-75  Score=612.42  Aligned_cols=508  Identities=62%  Similarity=1.062  Sum_probs=448.5

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCCccccccccccccCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHH
Q 009793            9 TYIIIILIISRLISTIGNSKPSNILVPHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAA   88 (525)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a   88 (525)
                      ..+++++.++.++++.+...+.....+..+   .+.++|.+|+.++..|++||+..+...|.+|++|+|++||+++|++|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A   84 (525)
T PLN02441          8 LRLLLILFLSSLTSSVGLCSSPSSLLPKLL---SLDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAA   84 (525)
T ss_pred             HHHHHHHHHHHhhhccCcccCccccccccc---ccCceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHH
Confidence            334444444445554444433333333222   26889999999999999999998899999999999999999999999


Q ss_pred             HcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCCccCcCCC-CeEEEcC-CcEEEEcCCccHHHHHHHHHhCCCcccccC
Q 009793           89 YNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNG-NGITVGS-GFYADVAGEQLWIDVLNATLEHGLAPASWT  166 (525)
Q Consensus        89 ~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~mn~i~~~-~~i~id~-~~~v~v~aGv~~~~l~~~l~~~gl~p~~~~  166 (525)
                      ++++++++|.+||+||++.|++.+.+|++|||++||+|... .++++|. ..+++|+||++|.++++++.++|++|++++
T Consensus        85 ~~~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~  164 (525)
T PLN02441         85 YGSSSPLTVAARGHGHSLNGQAQAPGGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWT  164 (525)
T ss_pred             hhccCCceEEEECCCcCCCCCccCCCeEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCcc
Confidence            74577999999999999999998878999999999962111 1467777 889999999999999999999999999999


Q ss_pred             CCCceeEeeecCCCCCCCCccccCcccccEEEEEEEecCccEEEecCCCChhHHHHHhcCCCcceEEEEeEEEEEecCCc
Q 009793          167 DYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKR  246 (525)
Q Consensus       167 ~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~~~vV~~dG~~~~~~~~~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~  246 (525)
                      +...+||||+++|+|.|+.+++||...|+|+++|||++||++++|++.+|+|||++++||+|+|||||++|+|++|.|+.
T Consensus       165 d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~  244 (525)
T PLN02441        165 DYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKR  244 (525)
T ss_pred             ccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCChhhHHHHHHHHHHccCcCCccccccccceeeec-CCccCCCcccCCCCCCCcccccccccccEEEEEEEE
Q 009793          247 VKWVRMLYSDFSSFSRDQEYLISMNGRRQKQALDYLEGTLIMD-QGSLDNWRSSFFPPSDHPKIISQVKTHAIIYCLEVA  325 (525)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~  325 (525)
                      ..++.+.|.+++++.+.++.+++.   ..+...|+++.+.+.. .+.+..|.++++.+++..++..++.++..+|++|++
T Consensus       245 v~~~~~~y~~~~~~~~d~~~li~~---~~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~  321 (525)
T PLN02441        245 VRWIRVLYSDFSTFTRDQERLISR---PPENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVA  321 (525)
T ss_pred             eEEEEEEcCCHHHHHHHHHHHHhc---CCCCCcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEE
Confidence            899999999999999999988862   3456789999998887 467777877778877776667777778899999999


Q ss_pred             eeeCCCCchhhHHHHHHHHhhccCCCCccccccchHHHHHHhhhhhhHHHhhccCccCCccceeeccccccHHHHHhHHH
Q 009793          326 KYYDDHTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVF  405 (525)
Q Consensus       326 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~~r~~~~d~~vP~~~l~~~~~~i~  405 (525)
                      .+|+..+...+++..+.+++.++...|..+..|++|.+|+++++..+...+..++|..+|+|+++.||.+++.+|.+.++
T Consensus       322 ~~~~~~~~~~~~~~~~~ll~~L~~~~~~~~~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~  401 (525)
T PLN02441        322 KYYDEDTSDTVDQEVESLLKRLSFIPGLLFTTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVF  401 (525)
T ss_pred             EeeCCCCccchhhHHHHHHhhcCCCCCCceecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHH
Confidence            99987677778889999999998778888889999999999999888999999999999999999999999999999999


Q ss_pred             HHhhhhcCCCCccEEEEeCCCCCCCCCccccccCCcEEEEEccccCCC--hhhHHHHHHHHHHHHHHHHHcCCceeecCC
Q 009793          406 RDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSSG--FDEWEAFDDQNKEILKFCENAGIKVKQYLP  483 (525)
Q Consensus       406 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~h~~i~~~~~~~--~~~~~~~~~~~~~l~~~~~~~G~g~~~yl~  483 (525)
                      +.+...  +..+++++|||+..+|+.+.+...++++..|.++++++..  ++..+.+.+.++++++.|.++|++.++|++
T Consensus       402 ~~i~~~--~~~G~~liyP~~~~~~~~~~s~~~P~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl~  479 (525)
T PLN02441        402 KGILLD--GTNGPILVYPLNRSKWDNRTSAVIPDEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGVKQYLP  479 (525)
T ss_pred             hhcccc--cCCCeEEEEecccccCCCCCccccCCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCceEEcCC
Confidence            888864  3458999999999999999999999999999999988764  347899999999999999999999999999


Q ss_pred             CCCChHHHHHhhhhhHHHHHHhhhcCCCcCcCCCCcccccc
Q 009793          484 YHRNKEEWIKHFGSKWNTFAQRKAHFDPKMILSPGQRIFNN  524 (525)
Q Consensus       484 ~~~~~~~w~~~~G~~~~~~~~iK~~~DP~gilNPGk~~~~~  524 (525)
                      ++.++++|++|||+.|+.+.+.|++|||++||+||+-||++
T Consensus       480 ~~~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL~pgq~if~~  520 (525)
T PLN02441        480 HYTTQEEWKRHFGPKWETFVRRKAKFDPLAILSPGQRIFNR  520 (525)
T ss_pred             CCCCHHHHHHHhcchHHHHHHHHhhCCchhhcCCCCccCCC
Confidence            99999999999999999999999999999999999999987

>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion] Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
3s1d_A516 Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-141
2qkn_A516 Crystal Structure Of Maize Cytokinin OxidaseDEHYDRO 1e-140
1w1o_A534 Native Cytokinin Dehydrogenase Length = 534 1e-140
3s1f_A516 Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-140
2qpm_A516 Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-140
3s1e_A516 Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-139
2exr_A524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 1e-121
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 2e-08
4aut_A468 Crystal Structure Of The Tuberculosis Drug Target D 6e-08
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 6e-07
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 5e-06
4g3t_A403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 8e-06
4fdn_A481 Mycobacterium Tuberculosis Dpre1 In Complex With Ct 1e-05
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 1e-05
4bca_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 1e-04
4bc7_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 1e-04
4bby_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 1e-04
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 3e-04
2vfr_A422 Alditol Oxidase From Streptomyces Coelicolor A3(2): 3e-04
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine Length = 516 Back     alignment and structure 
Iteration: 1

 Score =  497 bits (1279), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/501 (49%), Positives = 340/501 (67%), Gaps = 13/501 (2%)
Query: 35  PHKLLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNS-SV 93
           P  L  L +  +L  D  A  +AS+D+GNI    P AVLYPSST D+VAL+ AA ++   
Sbjct: 17  PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGW 76
Query: 94  PFKIAAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS-GFYADVAGEQLWIDVL 152
           P+ IA +GRGHS+ GQA A GGVVV M +L +      I V + G Y D  GEQ+WIDVL
Sbjct: 77  PYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVL 136
Query: 153 NATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCS 212
            A+L  G+AP SWTDYLYLTVGGTLSNAGISGQ FR+GPQISNV E+DV+TG GE++TCS
Sbjct: 137 RASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS 196
Query: 213 ALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLIS--- 269
              N++LF A LGGLGQFG+ITRARIA+EPAP R +WVR++Y+DF++FS DQE L +   
Sbjct: 197 KQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRP 256
Query: 270 MNGRRQKQALDYLEGTLIMDQG-SLDNWRSSFFPPSDHPKIISQV--KTHAIIYCLEVAK 326
             G      + Y+EG++ ++Q  + D   + FF  +D  +I++    +    +Y +E   
Sbjct: 257 GGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATL 316
Query: 327 YYDD--HTQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVP 384
            YD+     + + +EL ++   LSY+ GF F++DV+Y  FL+RV   E+ L   GLW VP
Sbjct: 317 NYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVP 376
Query: 385 HPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDEDVFY 444
           HPWLN+F+P+SRI+DF++GVF+ I+   +I  GP++VYP+N++ WDD MSA  P EDVFY
Sbjct: 377 HPWLNMFVPRSRIADFDRGVFKGILQGTDI-VGPLIVYPLNKSMWDDGMSAATPSEDVFY 435
Query: 445 TVGFLHSS-GFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFG-SKWNTF 502
            V  L SS   ++     +QN+ IL+FC+ AGI+ K YL  H ++ +W++HFG +KWN F
Sbjct: 436 AVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRF 495
Query: 503 AQRKAHFDPKMILSPGQRIFN 523
            + K  +DPK +LSPGQ IFN
Sbjct: 496 VEMKNKYDPKRLLSPGQDIFN 516
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu Length = 516 Back     alignment and structure
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase Length = 534 Back     alignment and structure
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine Length = 516 Back     alignment and structure
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Benzylurea Inhibitor Cpbu Length = 516 Back     alignment and structure
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine Length = 516 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 - Hexagonal Crystal Form Length = 481 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native Enzyme Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-179
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 1e-178
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 8e-36
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 2e-32
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-27
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 5e-26
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 2e-25
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 3e-25
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 5e-22
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 3e-21
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 2e-20
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 3e-20
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 7e-20
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 2e-19
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 9e-18
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 3e-17
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 2e-13
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-13
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 2e-13
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 3e-09
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 1e-06
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 1e-06
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
 Score =  514 bits (1324), Expect = e-179
 Identities = 227/497 (45%), Positives = 315/497 (63%), Gaps = 17/497 (3%)

Query: 38  LLTLDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKI 97
             +L+I   +    AA   A  D+G +    P+AV+ P   EDI   VKAA  S     +
Sbjct: 31  SESLNIQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSD-KLTV 89

Query: 98  AAKGRGHSVRGQAMADGGVVVEMMALKNYRNGNGITVGS--GFYADVAGEQLWIDVLNAT 155
           AA+G GHS+ GQAMA+GG+VV+M          G   G     + DV+G  LW DVL   
Sbjct: 90  AARGNGHSINGQAMAEGGLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRC 149

Query: 156 L-EHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYELDVVTGKGELMTCSAL 214
           + E+GLAP SWTDYL LTVGGTLSNAG+SGQ FRYGPQ SNV ELDVVTG G+++TCS +
Sbjct: 150 VSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEI 209

Query: 215 KNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRR 274
           +NSELF++ LGGLGQFGIITRAR+ L+PAP  V+W+R++Y++F  F++D E+L+S     
Sbjct: 210 ENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNES 269

Query: 275 QKQALDYLEGTLIMDQGS-LDNWRSSFFPPSDHPKIISQVKT-HAIIYCLEVAKYYDDH- 331
              + DY+EG + ++    ++ W +    P          ++  +++YCLE+  +Y D  
Sbjct: 270 ---SFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSD 326

Query: 332 TQSTLHKELQTLFKGLSYLPGFMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLF 391
           + ST+ K ++ L   L +  G  FE D+ YV+FL RV+  E   +  G WE PHPWLNLF
Sbjct: 327 SNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLF 386

Query: 392 LPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDRMSAVIPDE-DVFYTVGFLH 450
           + K  I DFN+ VF+++V  +N   GP+LVYP+ R++WDDR S VIP+E ++FY V  L 
Sbjct: 387 VSKRDIGDFNRTVFKELV--KNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLR 444

Query: 451 ----SSGFDEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRK 506
                +     E    QN+EI+ +C   GI  K YLP+++++EEWI+HFG++W+ F  RK
Sbjct: 445 FVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRK 504

Query: 507 AHFDPKMILSPGQRIFN 523
           A FDP  ILSPGQ+IFN
Sbjct: 505 AMFDPMAILSPGQKIFN 521
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Length = 322 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 100.0
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.98
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.94
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.9
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.89
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.85
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.82
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.22
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.38
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.35
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.79
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.42
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 95.91
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 88.04
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-65  Score=548.72  Aligned_cols=472  Identities=47%  Similarity=0.875  Sum_probs=385.7

Q ss_pred             cCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcCCCcEEEEcCC
Q 009793           43 IGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSSVPFKIAAKGRGHSVRGQAMADGGVVVEMMA  122 (525)
Q Consensus        43 ~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~~~~~v~~~g~G~~~~g~~~~~~gvvidl~~  122 (525)
                      ++++|.+|+.++..|++||+..+...|.+|++|+|++||+++|++|+ +++++||+|||+|||+.|++.+.+||+|||++
T Consensus        36 ~~~~v~~d~~~~~~~~~d~~~~~~~~P~~vv~P~s~eeV~~iv~~a~-~~~~~~v~~~GgGts~~g~~~~~~gvvidl~~  114 (524)
T 2exr_A           36 IQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAAL-RSDKLTVAARGNGHSINGQAMAEGGLVVDMST  114 (524)
T ss_dssp             CSSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHH-HSSSCCEEEESSSCCSSSTTCCTTSEEEEGGG
T ss_pred             CCCeEEeCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHH-hhcCceEEEECCCcCCCCcccCCCEEEEECcC
Confidence            58899999999999999998878899999999999999999999997 13899999999999999998877899999999


Q ss_pred             ccCcCCCCeEEE---cC-C--cEEEEcCCccHHHHHHHHH-hCCCcccccCCCCceeEeeecCCCCCCCCccccCccccc
Q 009793          123 LKNYRNGNGITV---GS-G--FYADVAGEQLWIDVLNATL-EHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISN  195 (525)
Q Consensus       123 mn~i~~~~~i~i---d~-~--~~v~v~aGv~~~~l~~~l~-~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~  195 (525)
                      ||+|    .++.   +. +  .+++||||++|.++++++. ++|+.|+++++.+.+||||+++++|.|+.+.+||.++|+
T Consensus       115 m~~i----~i~~~~~~~~~~~~~v~v~aGv~~~~l~~~~l~~~Gl~~~~~~s~~~~tiGG~va~ng~G~~~~~yG~~~d~  190 (524)
T 2exr_A          115 TAEN----HFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSN  190 (524)
T ss_dssp             GTTS----CEEEEECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEECSCCCSCCSSBHHHHHTTCCCCTTHHHHCCGGGS
T ss_pred             CCCc----EEeecccCCCCCceEEEEeCCcCHHHHHHHHHHHcCCCCCCCCcCCceeecccCCCCCCcccccccCcHhhh
Confidence            9974    3555   21 4  7999999999999866555 999998888887889999999999999999999999999


Q ss_pred             EEEEEEEecCccEEEecCCCChhHHHHHhcCCCcceEEEEeEEEEEecCCceEEEEEEeCChhhHHHHHHHHHHccCcCC
Q 009793          196 VYELDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSSFSRDQEYLISMNGRRQ  275 (525)
Q Consensus       196 v~~~~vV~~dG~~~~~~~~~~~dl~~~~~Gs~G~lGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (525)
                      |++++||++||++++++..+|+||+++++||+|+|||||+++||++|.|+...++.+.|++++++.+++..+++..  ..
T Consensus       191 V~~l~vV~~dG~v~~~~~~~~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~--~~  268 (524)
T 2exr_A          191 VTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQK--NE  268 (524)
T ss_dssp             EEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHHHHHHHHHHHHTSC--TT
T ss_pred             EEEEEEEecCCeEEEECCCCChhHHhHhhcCCCccEEEEEEEEEEEEcCCeeEEEEEEeCCHHHHHHHHHHHHHcC--Cc
Confidence            9999999999999999998899999999999999999999999999999998889999999999999999888752  34


Q ss_pred             ccccccccceeeecC-CccCCCcccCCCCCCCcccccccc-cccEEEEEEEEeee-CCCCchhhHHHHHHHHhhccCCCC
Q 009793          276 KQALDYLEGTLIMDQ-GSLDNWRSSFFPPSDHPKIISQVK-THAIIYCLEVAKYY-DDHTQSTLHKELQTLFKGLSYLPG  352 (525)
Q Consensus       276 ~~~~e~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~e~~~~~-~~~~~~~~~~~~~~l~~~~~~~~g  352 (525)
                       +.+|++|.+++... ...+.|...++..........+|. +..+++++|+..+| ++.+.++++++++++.+.+...++
T Consensus       269 -~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~  347 (524)
T 2exr_A          269 -SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEG  347 (524)
T ss_dssp             -SSCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCGGGSCTTCCSEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTT
T ss_pred             -chhHhhchhhhhcchhhhhhhhhcccccccccchhcCCcccccEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence             68899999987755 333333322221111111234542 35688899987767 666788899999999999987666


Q ss_pred             ccccccchHHHHHHhhhhhhHHHhhccCccCCccceeeccccccHHHHHhHHHHHhhhhcCCCCccEEEEeCCCCCCCCC
Q 009793          353 FMFEKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNITTGPVLVYPMNRNKWDDR  432 (525)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~~r~~~~d~~vP~~~l~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~~~~~  432 (525)
                      ..+..+..+..|.+.............+|..++++.|++||+++++++++.+.+..  .+++|.|+++++++....+..+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~~~~Dv~VP~s~l~~~~~~v~~~~--~gdgn~h~~i~~~~~~~~~~~r  425 (524)
T 2exr_A          348 LRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKEL--VKNGVNGPMLVYPLLRSRWDDR  425 (524)
T ss_dssp             CEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCCCCEEEEEEHHHHHHHHHHCCCCC--TTTCCSSCEEEEEEEGGGSCTT
T ss_pred             eEeecccchhhhhhhhhhHHHHhhhhcccccCCCeeEEEECHHHHHHHHHHHHHHH--hCCCCcceEEEEeCCchHHHhH
Confidence            54444445555543332112233446677777778899999999999998874333  2478889999999888788778


Q ss_pred             ccccccCC-cEEEEEccccCCCh----hhHHHHHHHHHHHHHHHHHcCCceeecCCCCCChHHHHHhhhhhHHHHHHhhh
Q 009793          433 MSAVIPDE-DVFYTVGFLHSSGF----DEWEAFDDQNKEILKFCENAGIKVKQYLPYHRNKEEWIKHFGSKWNTFAQRKA  507 (525)
Q Consensus       433 ~~~~~~dg-~~h~~i~~~~~~~~----~~~~~~~~~~~~l~~~~~~~G~g~~~yl~~~~~~~~w~~~~G~~~~~~~~iK~  507 (525)
                      .+.+.++| ++++.+.++....+    +..+++.+.++++.+.+...|.++++|+..+.++.+|+++||+.|+.|+++|+
T Consensus       426 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~yl~~~~~~~~w~~~~G~~~~~m~~iK~  505 (524)
T 2exr_A          426 TSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKA  505 (524)
T ss_dssp             SSCCCCSSCSEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEESSCCCCSHHHHHHHHGGGHHHHHHHHH
T ss_pred             HHhhCCCCccEEEEEEEeccCCCcccchHHHHHHHHHHHHHHHHHHcCCccEEeecCCCCHHHHHHHhhhHHHHHHHHHh
Confidence            88788774 56777665343322    45666777888999988888888999999999999999999999999999999


Q ss_pred             cCCCcCcCCCCcccccc
Q 009793          508 HFDPKMILSPGQRIFNN  524 (525)
Q Consensus       508 ~~DP~gilNPGk~~~~~  524 (525)
                      +|||+|||||||.||+|
T Consensus       506 ~~DP~~iLnPG~~if~~  522 (524)
T 2exr_A          506 MFDPMAILSPGQKIFNR  522 (524)
T ss_dssp             HHCTTCCBCGGGCSSCC
T ss_pred             hcCchhhcCCCCccCCC
Confidence            99999999999999986
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 525
d1w1oa1289 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {M 1e-138
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 7e-39
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 7e-23
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 2e-10
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 3e-09
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 3e-09
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 289 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cytokinin dehydrogenase 1
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score =  398 bits (1025), Expect = e-138
 Identities = 122/290 (42%), Positives = 184/290 (63%), Gaps = 11/290 (3%)

Query: 244 PKRVKWVRMLYSDFSSFSRDQEYLISMN---GRRQKQALDYLEGTLIMDQGSLDNWRSS- 299
           P R +WVR +Y+DF++FS DQE L +     G      + Y+EG++ ++Q    +  ++ 
Sbjct: 1   PARARWVRFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTG 60

Query: 300 FFPPSDHPKIISQVKTHA--IIYCLEVAKYYDDHT--QSTLHKELQTLFKGLSYLPGFMF 355
           FF  +D  +I++         +Y +E    YD+ T   + + +EL ++   LSY+ GF F
Sbjct: 61  FFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAF 120

Query: 356 EKDVSYVEFLNRVRSGELKLESQGLWEVPHPWLNLFLPKSRISDFNKGVFRDIVLKRNIT 415
           ++DV+Y  FL+RV   E+ L   GLW VPHPWLN+F+P+SRI+DF++GVF+ I L+    
Sbjct: 121 QRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGI-LQGTDI 179

Query: 416 TGPVLVYPMNRNKWDDRMSAVIPDEDVFYTVGFLHSS-GFDEWEAFDDQNKEILKFCENA 474
            GP++VYP+N++ WDD MSA  P EDVFY V  L SS   ++     +QN+ IL+FC+ A
Sbjct: 180 VGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLA 239

Query: 475 GIKVKQYLPYHRNKEEWIKHFG-SKWNTFAQRKAHFDPKMILSPGQRIFN 523
           GI+ K YL  H ++ +W++HFG +KWN F + K  +DPK +LSPGQ IFN
Sbjct: 240 GIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN 289
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 100.0
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.97
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.9
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.83
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.76
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.69
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 99.69
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.93
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 96.76
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 96.62
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 96.48
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 96.26
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 95.91
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.3e-43  Score=329.90  Aligned_cols=203  Identities=62%  Similarity=0.979  Sum_probs=189.7

Q ss_pred             cccCceeecChhHHHHHhccccCcCCCCccEEEECCCHHHHHHHHHHHHcCC-CCcEEEEecCCCCCCCCCcCCCcEEEE
Q 009793           41 LDIGARLHLDPAAIKSASSDYGNIFKENPVAVLYPSSTEDIVALVKAAYNSS-VPFKIAAKGRGHSVRGQAMADGGVVVE  119 (525)
Q Consensus        41 ~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~~~~ev~~~v~~a~~~~-~~~~v~~~g~G~~~~g~~~~~~gvvid  119 (525)
                      +.++++|.||++.+..|++||++.+...|.+|++|+|++||+++|++|++++ .++||++||+||++.|++...++++||
T Consensus         2 ~~~~g~v~td~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~~ivid   81 (206)
T d1w1oa2           2 LALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN   81 (206)
T ss_dssp             TTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTTSEEEE
T ss_pred             ccCCcEEEcCHHHhhhhEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCCCEeee
Confidence            4678999999999999999999889999999999999999999999998422 379999999999999998887899999


Q ss_pred             cCCccCcCCCCeEEEcC-CcEEEEcCCccHHHHHHHHHhCCCcccccCCCCceeEeeecCCCCCCCCccccCcccccEEE
Q 009793          120 MMALKNYRNGNGITVGS-GFYADVAGEQLWIDVLNATLEHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVYE  198 (525)
Q Consensus       120 l~~mn~i~~~~~i~id~-~~~v~v~aGv~~~~l~~~l~~~gl~p~~~~~~~~~tvGG~~~~~g~g~~~~~yG~~~d~v~~  198 (525)
                      |++||+|.....+++|+ ..+++||||++|.||+++|.++|+.|+.+++...+||||+++++|+|..+.+||..+|+|++
T Consensus        82 l~~l~~i~~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~  161 (206)
T d1w1oa2          82 MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLE  161 (206)
T ss_dssp             GGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEE
T ss_pred             ccccceeeeceeEEEecCCCEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeeccccceeccccccceeeeeeE
Confidence            99999864444589999 99999999999999999999999998888888899999999999999999999999999999


Q ss_pred             EEEEecCccEEEecCCCChhHHHHHhcCCCcceEEEEeEEEEEec
Q 009793          199 LDVVTGKGELMTCSALKNSELFYAALGGLGQFGIITRARIALEPA  243 (525)
Q Consensus       199 ~~vV~~dG~~~~~~~~~~~dl~~~~~Gs~G~lGiit~~tl~l~p~  243 (525)
                      +|+|++||+++++++.+|+||||+++||+|+|||||+++||++|.
T Consensus       162 ~evV~~~G~~~~~s~~~~~dl~~a~~g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         162 MDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEEEETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEEC
T ss_pred             EEEEcCCCcEEEECCCCCHHHHHHHhhCCCccEeEEEEEEEEEcC
Confidence            999999999999999999999999999999999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure