Citrus Sinensis ID: 009801
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | 2.2.26 [Sep-21-2011] | |||||||
| Q5TEA6 | 688 | Protein sel-1 homolog 2 O | yes | no | 0.779 | 0.594 | 0.351 | 1e-55 | |
| Q9UBV2 | 794 | Protein sel-1 homolog 1 O | no | no | 0.748 | 0.494 | 0.348 | 5e-54 | |
| Q9ESM7 | 794 | Protein sel-1 homolog 1 O | N/A | no | 0.752 | 0.497 | 0.345 | 2e-53 | |
| Q80Z70 | 794 | Protein sel-1 homolog 1 O | yes | no | 0.777 | 0.513 | 0.339 | 1e-52 | |
| Q9Z2G6 | 790 | Protein sel-1 homolog 1 O | yes | no | 0.777 | 0.516 | 0.339 | 2e-52 | |
| Q3V172 | 688 | Protein sel-1 homolog 2 O | no | no | 0.752 | 0.574 | 0.35 | 3e-52 | |
| Q5XI05 | 688 | Protein sel-1 homolog 2 O | no | no | 0.777 | 0.593 | 0.346 | 6e-52 | |
| Q80TS8 | 1137 | Protein sel-1 homolog 3 O | no | no | 0.704 | 0.325 | 0.293 | 1e-27 | |
| Q68CR1 | 1132 | Protein sel-1 homolog 3 O | no | no | 0.704 | 0.326 | 0.293 | 3e-27 | |
| P77234 | 325 | Uncharacterized protein Y | N/A | no | 0.563 | 0.910 | 0.287 | 4e-19 |
| >sp|Q5TEA6|SE1L2_HUMAN Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 153/435 (35%), Positives = 237/435 (54%), Gaps = 26/435 (5%)
Query: 93 ISKMMSAVTNGD--VRVMEEATSEVESAAMEGDPHARSVLGFL--YGMGMMRERNKGKAF 148
+ KM A+ G+ V+ + A ES A EG A++ LGFL YG+GM E ++ KA
Sbjct: 146 MEKMADALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGFLSSYGIGM--EYDQAKAL 203
Query: 149 LYHHFAAEGGNIQSKMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVI 203
+Y+ F + GGN+ S+M + Y YL Q+ + A+ Y ++A+ ++F S+ PV
Sbjct: 204 IYYTFGSAGGNMMSQMILGYRYLSGINVLQNC-EVALSYYKKVADYIADTFEKSEGVPV- 261
Query: 204 EPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263
E +R+ E + S D + +Q ++ A++G+ +G + G +GL +D
Sbjct: 262 EKVRL---TERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDY 318
Query: 264 TKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGIG 322
KAL +F KAA G +M F+G++Y G A V +N A ++ + AA + +G+G
Sbjct: 319 YKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHGLG 378
Query: 323 YLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382
LY G GV NY +A +YF+KAA+ + LG MYY G G+ +D KLA KYF +A
Sbjct: 379 LLYFHGKGVPL-NYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFYLA 437
Query: 383 ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGK 442
+ +G A Y LAKM+ TG G+ ++ A LYK V E G W+ A +Y GD+
Sbjct: 438 SQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDS 497
Query: 443 AFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502
+ + Y+ +AE+GYEVAQSN+A+IL+ ++ + + A LW +A+ QG
Sbjct: 498 SLVQYALLAEMGYEVAQSNSAFILES--------KKANILEKEKMYPMALLLWNRAAIQG 549
Query: 503 NEHAALLIGDAYYYG 517
N A + IGD +YYG
Sbjct: 550 NAFARVKIGDYHYYG 564
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Homo sapiens (taxid: 9606) |
| >sp|Q9UBV2|SE1L1_HUMAN Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 221/419 (52%), Gaps = 26/419 (6%)
Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
++ A E EG P ++ LGFLY G+ ++ KA +Y+ F A GGN+ + M +
Sbjct: 239 IQAAREMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLG 298
Query: 168 YTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE---NKGAL 219
Y Y + Q + A+ Y +A + ++ S V++ IR+ + E N G L
Sbjct: 299 YRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQRIRLPDEVENPGMNSGML 356
Query: 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP 279
+++ Q ++ A+KG+ A +G + G RG+ ++ +A +F+ AA+ G
Sbjct: 357 ------EEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNS 410
Query: 280 QSMEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338
+M FLG++Y+ G+ V ++ AL + AA +G+G Y+ G GV+ NY
Sbjct: 411 HAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQV-NYDL 469
Query: 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMF 398
A +YF+KAA+ G LG MYY GIGVKRD K A KYF +A+ GH AFY LA+M
Sbjct: 470 ALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMH 529
Query: 399 HTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVA 458
+G G+ ++ H A L+K V ERG WS A SY GD A + Y +AE GYEVA
Sbjct: 530 ASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVIQYLLLAEQGYEVA 589
Query: 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYG 517
QSNAA+ILD+ E+ + E + A W +A+ QG A + +GD ++YG
Sbjct: 590 QSNAAFILDQR--------EASIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFYG 640
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May play a role in Notch signaling (By similarity). May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Homo sapiens (taxid: 9606) |
| >sp|Q9ESM7|SE1L1_MESAU Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 144/417 (34%), Positives = 218/417 (52%), Gaps = 22/417 (5%)
Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
++ A E EG P ++ LGFLY G+ ++ KA +Y+ F A GGN+ + M +
Sbjct: 239 IQAAKEMFEKLTEEGSPKGQTALGFLYVSGLGVNSSQAKALVYYTFGALGGNLIAHMVLG 298
Query: 168 YTY---LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE---NKGALRK 221
Y Y + ++V + L V S + V++ IR+ + E N G L
Sbjct: 299 YRYWAGIGVLQSCESVLTHYRLVANHVASDISLTGGSVVQRIRLPDEVENPGMNSGML-- 356
Query: 222 SRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQS 281
+++ Q ++ A+KG+ A +G + G RG+ ++ +A +F+ AA+ G +
Sbjct: 357 ----EEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHA 412
Query: 282 MEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340
M FLG++Y+ G+ V ++ AL + AA +G+G Y+ G G++ NY A
Sbjct: 413 MAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQV-NYDLAL 471
Query: 341 EYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHT 400
+YF+KAA+ G LG MYY GIGVKRD K A KYF +A+ GH AFY LA+M +
Sbjct: 472 KYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHAS 531
Query: 401 GVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQS 460
G G+ ++ H A L+K V ERG WS A SY GD A + Y +AE GYEVAQS
Sbjct: 532 GTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVVQYLLLAEQGYEVAQS 591
Query: 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYG 517
NAA+ILD+ E+ + E + A W +A+ QG A + +GD ++YG
Sbjct: 592 NAAFILDQR--------EATIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFYG 640
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Mesocricetus auratus (taxid: 10036) |
| >sp|Q80Z70|SE1L1_RAT Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 228/436 (52%), Gaps = 28/436 (6%)
Query: 93 ISKMMSAVTNGD--VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
+ ++ A+ GD + ++ A E EG P ++ LGFLY G+ ++ KA +Y
Sbjct: 222 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVY 281
Query: 151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
+ F A GGN+ + M + Y Y + Q + A+ Y +A + ++ S V++
Sbjct: 282 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 339
Query: 206 IRIHNGAEE---NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRD 262
IR+ + E N G L +++ Q ++ A+KG+ A +G + G RG+ ++
Sbjct: 340 IRLPDEVENPGMNSGML------EEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQN 393
Query: 263 RTKALMWFSKAADKGEPQSMEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSAYNGI 321
+A +F+ AA+ G +M FLG++Y+ G+ V ++ AL + AA +G+
Sbjct: 394 HQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGL 453
Query: 322 GYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381
G Y+ G GV+ NY A +YF+KAA+ G LG MYY GIGVKRD K A KYF +
Sbjct: 454 GMAYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNL 512
Query: 382 AANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVG 441
A+ GH AFY LA+M +G G+ ++ H A L+K V ERG WS A SY D
Sbjct: 513 ASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDDDYN 572
Query: 442 KAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501
A + Y +AE GYEVAQSNAA+ILD+ E+ + E + A W +A+ Q
Sbjct: 573 AAVVQYLLLAEQGYEVAQSNAAFILDQR--------EATIVGENETYPRALLHWNRAASQ 624
Query: 502 GNEHAALLIGDAYYYG 517
G A + +GD ++YG
Sbjct: 625 GYTVARIKLGDYHFYG 640
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Rattus norvegicus (taxid: 10116) |
| >sp|Q9Z2G6|SE1L1_MOUSE Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 228/436 (52%), Gaps = 28/436 (6%)
Query: 93 ISKMMSAVTNGD--VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
+ ++ A+ GD + ++ A E EG P ++ LGFLY G+ ++ KA +Y
Sbjct: 218 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVY 277
Query: 151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
+ F A GGN+ + M + Y Y + Q + A+ Y +A + ++ S V++
Sbjct: 278 YTFGALGGNLIAHMILGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 335
Query: 206 IRIHNGAEE---NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRD 262
IR+ + E N G L +++ Q ++ A+KG+ A +G + G RG+ ++
Sbjct: 336 IRLPDEVENPGMNSGML------EEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQN 389
Query: 263 RTKALMWFSKAADKGEPQSMEFLGEIYARGAG-VERNYTKALEWLTHAARQQLYSAYNGI 321
+A +F+ AA+ G +M FLG++Y+ G+ V ++ AL + AA +G+
Sbjct: 390 HQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGL 449
Query: 322 GYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381
G Y+ G GV+ NY A +YF+KAA+ G LG MYY GIGVKRD K A KYF +
Sbjct: 450 GMAYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNL 508
Query: 382 AANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVG 441
A+ GH AFY LA+M +G G+ ++ H A L+K V ERG WS A SY D
Sbjct: 509 ASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDEDYN 568
Query: 442 KAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501
A + Y +AE GYEVAQSNAA+ILD+ E+ + E + A W +A+ Q
Sbjct: 569 AAVVQYLLLAEQGYEVAQSNAAFILDQR--------EATIVGENETYPRALLHWNRAASQ 620
Query: 502 GNEHAALLIGDAYYYG 517
G A + +GD ++YG
Sbjct: 621 GYTVARIKLGDYHFYG 636
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Mus musculus (taxid: 10090) |
| >sp|Q3V172|SE1L2_MOUSE Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 147/420 (35%), Positives = 231/420 (55%), Gaps = 25/420 (5%)
Query: 108 MEEATSEV---ESAAMEGDPHARSVLGFL--YGMGMMRERNKGKAFLYHHFAAEGGNIQS 162
M+ T+ + ES A EG A++ LGFL YG+GM E ++ KA +Y+ F + GG++ S
Sbjct: 160 MQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGM--EYDQAKALIYYTFGSAGGSMMS 217
Query: 163 KMAVAYTYLR--QDMHDKAVKL--YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218
+M + Y YL + + V L Y ++A+ + S+ PV E +R+ E +
Sbjct: 218 QMILGYRYLSGINVLQNCEVALNHYKKVADYIADKLEKSEGIPV-EKVRL---TERPENL 273
Query: 219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE 278
S D + +Q ++ A++G+ +G + G +GL +D +KAL +F KAA G
Sbjct: 274 SSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYSKALYYFLKAAKAGS 333
Query: 279 PQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYT 337
+M F+G++Y G A +N A ++ + AA + +G+G LY G GV NY
Sbjct: 334 ANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPV-NYG 392
Query: 338 KAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
+A +YF+KAA+ + LG MYY G GV +D KLA KYF +A+ +G A Y LA+M
Sbjct: 393 EALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEM 452
Query: 398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEV 457
+ TG G+ ++ A LYK V E G W+ A +Y GD+ + + Y+ +AE+GYEV
Sbjct: 453 YATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDSSLIQYALLAEMGYEV 512
Query: 458 AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYG 517
AQSN+A+IL+ + + +G+ + + A LW +A+ QGN A + IGD +YYG
Sbjct: 513 AQSNSAFILE--SKKAKILGKE------KLYPMALLLWNRAAIQGNAFARVKIGDYHYYG 564
|
Mus musculus (taxid: 10090) |
| >sp|Q5XI05|SE1L2_RAT Protein sel-1 homolog 2 OS=Rattus norvegicus GN=Sel1l2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 238/436 (54%), Gaps = 28/436 (6%)
Query: 93 ISKMMSAVTNGDVRVMEEATSEV---ESAAMEGDPHARSVLGFL--YGMGMMRERNKGKA 147
+ KM A+ G M+ T+ + ES A EG A++ LGFL YG+GM E ++ KA
Sbjct: 146 MEKMADALLFGSFG-MQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGM--EYDQAKA 202
Query: 148 FLYHHFAAEGGNIQSKMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPV 202
+Y+ F + GG++ S+M + Y YL Q+ + A+ Y ++A+ + S+ PV
Sbjct: 203 LIYYTFGSAGGSMMSQMILGYRYLSGINVLQNC-EVALNHYKKVADYIADKLEKSEGIPV 261
Query: 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRD 262
E +R+ E + S D + +Q ++ A++G+ +G + G +GL +D
Sbjct: 262 -EKVRL---TERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQD 317
Query: 263 RTKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGI 321
+KAL +F KAA G +M F+G++Y G A +N A ++ + AA + +G+
Sbjct: 318 YSKALYYFLKAAKAGSANAMAFIGKMYLEGNAAAPQNNATAFKYFSMAASKGNAIGLHGL 377
Query: 322 GYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381
G LY G GV NY +A +YF+KAA+ ++LG MYY G GV +D KLA KYF +
Sbjct: 378 GLLYFHGKGVPV-NYGEALKYFQKAAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYL 436
Query: 382 AANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVG 441
A+ +G A Y LA+M+ TG G+ ++ A YK V E G W+ A +Y GDV
Sbjct: 437 ASQSGQPLAIYYLAEMYATGTGVLRSCRTAVEPYKGVCELGHWAEKFLTAYFAYKDGDVD 496
Query: 442 KAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501
+ + Y+ +AE+GYEVAQSN+A+IL+ + + +G+ + + A LW +A+ Q
Sbjct: 497 SSLIQYALLAEMGYEVAQSNSAFILE--SKKAKILGKE------KMYPMALLLWNRAAIQ 548
Query: 502 GNEHAALLIGDAYYYG 517
GN A + IGD +YYG
Sbjct: 549 GNAFARVKIGDYHYYG 564
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q80TS8|SE1L3_MOUSE Protein sel-1 homolog 3 OS=Mus musculus GN=Sel1l3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 194/419 (46%), Gaps = 49/419 (11%)
Query: 130 LGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYT-YLRQDMHDKAVKL-YAELA 187
L Y G+ R++ + LY +G S M + Y Y D + +L YA +
Sbjct: 581 LTVFYETGLNGPRDQLQGMLYSLVGGQGSERLSSMNLGYKHYQGVDSYPLDWELSYAYYS 640
Query: 188 EIAVNSFL----ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG 243
IA + L + D +E IR+ ++ L+ ED + F L+++A +GNA
Sbjct: 641 NIATKTPLDQHTLQGDQAYVETIRL-----KDDEILKVQTKEDGDVFMWLKHEATRGNAA 695
Query: 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEF-LGEIYARGAGVERNYTKA 302
A ++ ++G +G+ ++ A+ W++K A + E ++ + + +G GV++N A
Sbjct: 696 AQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIVLFKGQGVKKNRRLA 755
Query: 303 LEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362
LE + AA + L+ A NG+G+ Y K +KNY KA +Y+ KA + YNLGV+Y
Sbjct: 756 LELMKKAASKGLHQAVNGLGWYYHKF----RKNYAKAAKYWLKAEEMGNPDASYNLGVLY 811
Query: 363 YKGI--GVK-RDVKLACKYFLVAANAGHQKAFYQLAKMFHTG--VGLKKNLHMATALYKL 417
GI GV R++ LA +YF AA GH + + + TG ++ A K
Sbjct: 812 LDGIFPGVPGRNLTLAGEYFHKAAQGGHIEGTLWCSLYYITGNLETFPRDPEKAVVWAKH 871
Query: 418 VAER-GPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE----- 471
VAE+ G + R L +YL+G +A L Y AE G EV+Q+N A I ++ +
Sbjct: 872 VAEKNGYLGHVIRKGLNAYLEGLWHEALLYYVLAAETGIEVSQTNLAHICEERPDLAGRY 931
Query: 472 -GSMCMGE----SGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHSEGL 525
G C+ S F DA A L +GD YYYG S+ L
Sbjct: 932 LGVNCVWRYYNFSVFQIDAP-----------------SFAYLKMGDLYYYGHQNQSQDL 973
|
Mus musculus (taxid: 10090) |
| >sp|Q68CR1|SE1L3_HUMAN Protein sel-1 homolog 3 OS=Homo sapiens GN=SEL1L3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 193/419 (46%), Gaps = 49/419 (11%)
Query: 130 LGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYT-YLRQDMHDKAVKL-YAELA 187
L Y G+ R++ + LY +G S M + Y Y D + +L YA +
Sbjct: 576 LAVFYETGLNVPRDQLQGMLYSLVGGQGSERLSSMNLGYKHYQGIDNYPLDWELSYAYYS 635
Query: 188 EIAVNSFL----ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG 243
IA + L + D +E IR+ ++ L+ ED + F L+++A +GNA
Sbjct: 636 NIATKTPLDQHTLQGDQAYVETIRL-----KDDEILKVQTKEDGDVFMWLKHEATRGNAA 690
Query: 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEF-LGEIYARGAGVERNYTKA 302
A ++ ++G +G+ ++ A+ W++K A + E ++ + + +G GV++N A
Sbjct: 691 AQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIVLFKGQGVKKNRRLA 750
Query: 303 LEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362
LE + AA + L+ A NG+G+ Y K KKNY KA +Y+ KA + YNLGV++
Sbjct: 751 LELMKKAASKGLHQAVNGLGWYYHKF----KKNYAKAAKYWLKAEEMGNPDASYNLGVLH 806
Query: 363 YKGI--GVK-RDVKLACKYFLVAANAGHQKAFYQLAKMFHTG--VGLKKNLHMATALYKL 417
GI GV R+ LA +YF AA GH + + + TG ++ A K
Sbjct: 807 LDGIFPGVPGRNQTLAGEYFHKAAQGGHMEGTLWCSLYYITGNLETFPRDPEKAVVWAKH 866
Query: 418 VAER-GPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE----- 471
VAE+ G + R L +YL+G +A L Y AE G EV+Q+N A I ++ +
Sbjct: 867 VAEKNGYLGHVIRKGLNAYLEGSWHEALLYYVLAAETGIEVSQTNLAHICEERPDLARRY 926
Query: 472 -GSMCMGE----SGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHSEGL 525
G C+ S F DA A L +GD YYYG S+ L
Sbjct: 927 LGVNCVWRYYNFSVFQIDAP-----------------SFAYLKMGDLYYYGHQNQSQDL 968
|
Homo sapiens (taxid: 9606) |
| >sp|P77234|YBEQ_ECOLI Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 143/317 (45%), Gaps = 21/317 (6%)
Query: 111 ATSEVESAAMEGDPHARSVLGFLYGM-GMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYT 169
+ E+ A +GD A+ ++GF Y + + KAF + AAE G+ +++ ++
Sbjct: 12 SIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGHCEAQYSLGQK 71
Query: 170 YLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED--- 226
Y K E A+ F + K ++ H A N RGE
Sbjct: 72 YTEDKSRHKD-------NEQAI--FWLKK-----AALQGHTFAS-NALGWTLDRGEAPNY 116
Query: 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLG 286
EA + A+ G + A +G Y G G+ +D A W+ +AA +G + L
Sbjct: 117 KEAVVWYQIAAESGMSYAQNNLGWMYRNG-NGVAKDYALAFFWYKQAALQGHSDAQNNLA 175
Query: 287 EIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA 346
++Y G GV +N T A W +A+Q A I + Y G GV++ +Y +A ++ KA
Sbjct: 176 DLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQ-DYKQAMYWYLKA 234
Query: 347 ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKK 406
A G + N+G MY G GV++D + A ++F AA A+Y LA M+H G G
Sbjct: 235 AAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPV 294
Query: 407 NLHMATALYKLVAERGP 423
+L A LY+ V G
Sbjct: 295 DLRQALDLYRKVQSSGT 311
|
Escherichia coli (strain K12) (taxid: 83333) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| 255579265 | 681 | conserved hypothetical protein [Ricinus | 0.973 | 0.750 | 0.793 | 0.0 | |
| 118489046 | 683 | unknown [Populus trichocarpa x Populus d | 0.961 | 0.739 | 0.761 | 0.0 | |
| 224135581 | 683 | predicted protein [Populus trichocarpa] | 0.961 | 0.739 | 0.761 | 0.0 | |
| 224118634 | 682 | predicted protein [Populus trichocarpa] | 0.971 | 0.747 | 0.751 | 0.0 | |
| 297850220 | 678 | hypothetical protein ARALYDRAFT_889238 [ | 0.969 | 0.750 | 0.745 | 0.0 | |
| 18394588 | 678 | Hr.3 like protein [Arabidopsis thaliana] | 0.969 | 0.750 | 0.743 | 0.0 | |
| 14532716 | 678 | unknown protein [Arabidopsis thaliana] | 0.969 | 0.750 | 0.741 | 0.0 | |
| 449439463 | 678 | PREDICTED: protein sel-1 homolog 1-like | 0.971 | 0.752 | 0.738 | 0.0 | |
| 449503099 | 679 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.973 | 0.752 | 0.729 | 0.0 | |
| 225456173 | 674 | PREDICTED: protein sel-1 homolog 2 [Viti | 0.942 | 0.734 | 0.767 | 0.0 |
| >gi|255579265|ref|XP_002530478.1| conserved hypothetical protein [Ricinus communis] gi|223529975|gb|EEF31901.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/523 (79%), Positives = 462/523 (88%), Gaps = 12/523 (2%)
Query: 7 TPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAA-----DWDDFGDSES 61
T + L+I+SL P+SL ARPF+L+LSQDD+KD+ A+ DD S+A +WD+FGDS+S
Sbjct: 7 TYRFTFSLIIVSLLPLSLTARPFVLLLSQDDLKDAPATVDDSSSATDSPPEWDEFGDSDS 66
Query: 62 MTEENLDPGSWSPVFEPSIDPGAIN------GSYYITISKMMSAVTNGDVRVMEEATSEV 115
E LDPGSW P+FEP + + YY + KM+++V++G VR+MEEA +E+
Sbjct: 67 KPEHELDPGSWRPIFEPDSSSSSSSVEDSEMAEYYSGVEKMLASVSDGKVRLMEEAAAEI 126
Query: 116 ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDM 175
ESAA+ G+PHA+SVLGFLYG+G M+ER+K KAFLYHHFAAE GN+QSKMA+A+TY RQDM
Sbjct: 127 ESAAVSGNPHAQSVLGFLYGLGQMKERDKAKAFLYHHFAAESGNMQSKMALAFTYSRQDM 186
Query: 176 HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235
HDKAVKLYAELAE+AVNSFLISKDSPVIEP+RIHNGAEENK ALRKSRGE+DE FQILEY
Sbjct: 187 HDKAVKLYAELAEVAVNSFLISKDSPVIEPVRIHNGAEENKEALRKSRGEEDEDFQILEY 246
Query: 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295
QAQKGNAGAMYKIGLFYYFGLRGLRRD KAL WFSKA KGEP+SME LGEIYARGAGV
Sbjct: 247 QAQKGNAGAMYKIGLFYYFGLRGLRRDHAKALSWFSKAVKKGEPRSMELLGEIYARGAGV 306
Query: 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355
ERNYTKALEWLT A++QQLYSAYNG+GYLYVKGYGVE KNYTKAKEYFEKAA NEEAGGH
Sbjct: 307 ERNYTKALEWLTLASKQQLYSAYNGMGYLYVKGYGVE-KNYTKAKEYFEKAAHNEEAGGH 365
Query: 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415
YNLGVMY KGIGVKRDVKLACKYF+VAANAG KAFYQLAKMFHTGVGLKK+L MATALY
Sbjct: 366 YNLGVMYLKGIGVKRDVKLACKYFIVAANAGQPKAFYQLAKMFHTGVGLKKDLVMATALY 425
Query: 416 KLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMC 475
KLVAERGPWS+LSRWALESYLKGDVGKAFLLY+RMAE+GYE+AQSNAAWILDKYGE SMC
Sbjct: 426 KLVAERGPWSTLSRWALESYLKGDVGKAFLLYARMAEMGYEIAQSNAAWILDKYGERSMC 485
Query: 476 MGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
MGESGFCTDAERHQ AHSLWWQASEQGNEHAALLIGDAYYYGR
Sbjct: 486 MGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGR 528
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118489046|gb|ABK96330.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/528 (76%), Positives = 457/528 (86%), Gaps = 23/528 (4%)
Query: 10 LIICLLILSLYPISLKARPFILVLSQDDIKD--SAASTDD----ESAADWDDFGDSESMT 63
L + LLI SL P SL A P +L+LSQDD+KD S+A+T D ES +WD+FGDS+S
Sbjct: 6 LTLSLLIFSLLPPSLLAGPVVLILSQDDLKDIPSSATTTDADPAESLPEWDEFGDSDSKP 65
Query: 64 EENLDPGSWSPVFEPSIDPGAINGS------------YYITISKMMSAVTNGDVRVMEEA 111
E L+PGSWSP+FEP A+N S YY + KM+SAV++G+V VMEE+
Sbjct: 66 EHELEPGSWSPIFEPD----AVNSSTSESKLDTEMEQYYSAVEKMLSAVSDGEVGVMEES 121
Query: 112 TSEVES-AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTY 170
+E+E A+++G+ HA+SVLGFLYG+G ++ERNK KAFLYH+FAA+GGN+QSK+A+AYTY
Sbjct: 122 VAEIEELASVKGNSHAQSVLGFLYGLGQIKERNKAKAFLYHNFAAKGGNLQSKLAIAYTY 181
Query: 171 LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAF 230
RQ M++KAVKLYAELAE+AVNSFLISK SPVIEP+RIHNGAEENK AL+KSRGEDD+ F
Sbjct: 182 YRQHMYEKAVKLYAELAEVAVNSFLISKYSPVIEPVRIHNGAEENKEALKKSRGEDDDVF 241
Query: 231 QILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYA 290
QILEYQAQKGNAGAMYKIG FYYFGLRGLRRD KAL WFSKA +KGEP+SME LGEIYA
Sbjct: 242 QILEYQAQKGNAGAMYKIGYFYYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGEIYA 301
Query: 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350
RGAGVERNYTKALEWLT AA+QQLYSAYNG+GYLYVKGYGVEKKNYTKAKEYFE+AADNE
Sbjct: 302 RGAGVERNYTKALEWLTLAAKQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFERAADNE 361
Query: 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHM 410
+AGGHYNLGV++ KGIGVKRDVKLAC+YF+VAANAG KAFYQLAKMFH GVGLKKNL M
Sbjct: 362 DAGGHYNLGVIHLKGIGVKRDVKLACQYFIVAANAGQPKAFYQLAKMFHKGVGLKKNLPM 421
Query: 411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYG 470
AT LYKLVAERGPW+SLSRWALESYLKG+VGKA LLYSRMAELGYE+AQSNAAWILDKY
Sbjct: 422 ATGLYKLVAERGPWNSLSRWALESYLKGNVGKASLLYSRMAELGYEIAQSNAAWILDKYA 481
Query: 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
E SMC+GESGFCTD+ERHQ AHSLWW+ASEQGNEHAALLIGDAYYYGR
Sbjct: 482 EHSMCVGESGFCTDSERHQRAHSLWWEASEQGNEHAALLIGDAYYYGR 529
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135581|ref|XP_002322109.1| predicted protein [Populus trichocarpa] gi|222869105|gb|EEF06236.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/528 (76%), Positives = 456/528 (86%), Gaps = 23/528 (4%)
Query: 10 LIICLLILSLYPISLKARPFILVLSQDDIKD--SAASTDD----ESAADWDDFGDSESMT 63
L + LLI SL P SL A PF+L+LSQDD+KD S+A+T D ES +WD+FGDS+S
Sbjct: 6 LTLSLLIFSLLPPSLLAGPFVLILSQDDLKDIPSSATTTDADPAESLPEWDEFGDSDSKP 65
Query: 64 EENLDPGSWSPVFEPSIDPGAINGS------------YYITISKMMSAVTNGDVRVMEEA 111
E L+PGSW P+FEP A+N S YY + KM+SAV++G+V VMEE+
Sbjct: 66 EHELEPGSWRPIFEPD----AVNSSTSESKLDTEMEQYYSAVEKMLSAVSDGEVGVMEES 121
Query: 112 TSEVES-AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTY 170
+E+E A+++G+ HA+SVLGFLYG+G ++ERNK KAFLYH+FAA+GGN+QSK+A+AYTY
Sbjct: 122 VAEIEELASVKGNSHAQSVLGFLYGLGQIKERNKAKAFLYHNFAAKGGNLQSKLAIAYTY 181
Query: 171 LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAF 230
RQ M++KAVKLYAELAE+AVNSFLISK SPVIEP+RIHNGAEENK ALRKSRGEDD+ F
Sbjct: 182 YRQHMYEKAVKLYAELAEVAVNSFLISKYSPVIEPVRIHNGAEENKEALRKSRGEDDDVF 241
Query: 231 QILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYA 290
QILEYQAQKGNAGAMYKIG FYYFGLRGLRRD KAL WFSKA +KGEP+SME LGEIYA
Sbjct: 242 QILEYQAQKGNAGAMYKIGYFYYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGEIYA 301
Query: 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350
RGAGVERNYTKALEWLT AA+QQLYSAYNG+GYLYVKGYGVEKKNYTKAKEYFE+AADNE
Sbjct: 302 RGAGVERNYTKALEWLTLAAKQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFERAADNE 361
Query: 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHM 410
+AGGHYNLGV++ KGIGVKRDVKLAC+YF+VAANAG KAFYQLAKMFH GVGLKKNL M
Sbjct: 362 DAGGHYNLGVIHLKGIGVKRDVKLACQYFIVAANAGQPKAFYQLAKMFHKGVGLKKNLPM 421
Query: 411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYG 470
A LYKLVAERGPW+SLSRWALESYLKG+VGKA LLYSRMAELGYE+AQSNAAWILDKY
Sbjct: 422 AIGLYKLVAERGPWNSLSRWALESYLKGNVGKASLLYSRMAELGYEIAQSNAAWILDKYA 481
Query: 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
E SMC+GESGFCTD+ERHQ AHSLWW+ASEQGNEHAALLIGDAYYYGR
Sbjct: 482 EHSMCLGESGFCTDSERHQRAHSLWWEASEQGNEHAALLIGDAYYYGR 529
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118634|ref|XP_002317869.1| predicted protein [Populus trichocarpa] gi|222858542|gb|EEE96089.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/527 (75%), Positives = 454/527 (86%), Gaps = 17/527 (3%)
Query: 9 KLIICLLILSLYPISLKARPFILVLSQDDIKD-----SAASTD---DESAADWDDFGDSE 60
KL + LLI SL P+SL AR + L+LSQ+D+KD + S+D +ES +WD+FGDS+
Sbjct: 5 KLTLSLLIFSLLPLSLHARQYFLILSQEDLKDIPSSPTTTSSDVDPNESPPEWDEFGDSD 64
Query: 61 SMTEENLDPGSWSPVFEPSIDPGAINGS--------YYITISKMMSAVTNGDVRVMEEAT 112
S E LDPGSW P+FEP + + S YY + KM SAV++ +V+V+EEA
Sbjct: 65 SKPEHELDPGSWRPIFEPDATTSSTSASKLDPEMEQYYSAVEKMFSAVSDSEVKVVEEAV 124
Query: 113 SEVESA-AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYL 171
+E+E ++G+ HA+SVLGFLYG+G ++ER+K KAFLYHHFAA+GG++QSK A+AYTY
Sbjct: 125 AEIEELATVKGNSHAQSVLGFLYGLGQIKERDKAKAFLYHHFAADGGSLQSKSALAYTYY 184
Query: 172 RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQ 231
RQ M++ AVKLYAELAE+AVNSFLISKDSPVIEP+RIHNGAEENK ALRKSRGEDD+ FQ
Sbjct: 185 RQQMYENAVKLYAELAEVAVNSFLISKDSPVIEPVRIHNGAEENKEALRKSRGEDDDVFQ 244
Query: 232 ILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR 291
ILEYQAQKGNAGAM+KIG F+YFGLRGLRRD KAL WFSKA +KGEP+SME LGEIYAR
Sbjct: 245 ILEYQAQKGNAGAMFKIGYFHYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGEIYAR 304
Query: 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE 351
GAGVERNYTKALEWLT AA+QQLYSAYNG+GYLYVKGYGV+KKNY+KAKEYFE+AAD+E+
Sbjct: 305 GAGVERNYTKALEWLTLAAQQQLYSAYNGMGYLYVKGYGVQKKNYSKAKEYFERAADHED 364
Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMA 411
AGGHYNLGVM+ KGIGVKRDV+LAC+YF+VAANAG KAFYQLAKMFH GVGLKKNL MA
Sbjct: 365 AGGHYNLGVMHLKGIGVKRDVRLACQYFIVAANAGQPKAFYQLAKMFHMGVGLKKNLLMA 424
Query: 412 TALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE 471
TALYKLVAERGPW+SLSRWALESYLKGDVGKAFLLYSRMAELGYE+AQSNAAWILDKY E
Sbjct: 425 TALYKLVAERGPWNSLSRWALESYLKGDVGKAFLLYSRMAELGYEIAQSNAAWILDKYAE 484
Query: 472 GSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
GSMCMGESGFCTD+ERHQ AH LWWQASEQGNEHAALLIGDAYYYGR
Sbjct: 485 GSMCMGESGFCTDSERHQRAHFLWWQASEQGNEHAALLIGDAYYYGR 531
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850220|ref|XP_002892991.1| hypothetical protein ARALYDRAFT_889238 [Arabidopsis lyrata subsp. lyrata] gi|297338833|gb|EFH69250.1| hypothetical protein ARALYDRAFT_889238 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/510 (74%), Positives = 436/510 (85%), Gaps = 1/510 (0%)
Query: 10 LIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAADWDDFGDSESMTEENLDP 69
+I+ LL+ S +S+ ARP +LVLS DD+ ++D+D+FG+SE +EE LDP
Sbjct: 9 VILSLLVFSFVELSVHARPVVLVLSNDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDP 68
Query: 70 GSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARS 128
GSW +FEP A + YY + +++SA + G+ R+MEEA E+E+A+ GDPHA+S
Sbjct: 69 GSWRSIFEPDDSTVQAASPQYYSGLKRILSAASEGNFRLMEEAVDEIEAASSAGDPHAQS 128
Query: 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188
++GF+YG+GMMRE++K K+FL+H FAA GGN+QSKMA+A+TYLRQDMHDKAV+LYAELAE
Sbjct: 129 IMGFVYGIGMMREKSKSKSFLHHSFAAAGGNMQSKMALAFTYLRQDMHDKAVQLYAELAE 188
Query: 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKI 248
AVNSFLISKDSPV+EP RIH+G EENKGALRKSRGE+DE FQILEYQAQKGNA AMYKI
Sbjct: 189 TAVNSFLISKDSPVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKI 248
Query: 249 GLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308
GLFYYFGLRGLRRD TKAL WF KA DKGEP+SME LGEIYARGAGVERNYTKALEWLT
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTL 308
Query: 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGV 368
AA++ LYSA+NGIGYLYVKGYGV+KKNYTKA+EYFEKA DNE+ GHYNLGV+Y KGIGV
Sbjct: 309 AAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGV 368
Query: 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428
KRDV+ A KYF VAANAG KAFYQLAKMFHTGVGLKKNL MAT+ YKLVAERGPWSSLS
Sbjct: 369 KRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLS 428
Query: 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488
RWALE+YLKGDVGKA +LYSRMAE+GYEVAQSNAAWILDKYGE SMCMG SGFCTD ERH
Sbjct: 429 RWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH 488
Query: 489 QCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
+ AHSLWW+ASEQGNEHAALLIGDAYYYGR
Sbjct: 489 ERAHSLWWRASEQGNEHAALLIGDAYYYGR 518
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394588|ref|NP_564049.1| Hr.3 like protein [Arabidopsis thaliana] gi|8671775|gb|AAF78381.1|AC069551_14 T10O22.22 [Arabidopsis thaliana] gi|51848591|dbj|BAD42326.1| Hrd3p like protein [Arabidopsis thaliana] gi|332191571|gb|AEE29692.1| Hr.3 like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/510 (74%), Positives = 434/510 (85%), Gaps = 1/510 (0%)
Query: 10 LIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAADWDDFGDSESMTEENLDP 69
+I+ LL+ S + ARP +LVLS DD+ ++D+D+FG+SE +EE LDP
Sbjct: 9 VILSLLVFSFIEFGVHARPVVLVLSNDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDP 68
Query: 70 GSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARS 128
GSW +FEP A + YY + K++SA + G+ R+MEEA E+E+A+ GDPHA+S
Sbjct: 69 GSWRSIFEPDDSTVQAASPQYYSGLKKILSAASEGNFRLMEEAVDEIEAASSAGDPHAQS 128
Query: 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188
++GF+YG+GMMRE++K K+FL+H+FAA GGN+QSKMA+A+TYLRQDMHDKAV+LYAELAE
Sbjct: 129 IMGFVYGIGMMREKSKSKSFLHHNFAAAGGNMQSKMALAFTYLRQDMHDKAVQLYAELAE 188
Query: 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKI 248
AVNSFLISKDSPV+EP RIH+G EENKGALRKSRGE+DE FQILEYQAQKGNA AMYKI
Sbjct: 189 TAVNSFLISKDSPVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKI 248
Query: 249 GLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308
GLFYYFGLRGLRRD TKAL WF KA DKGEP+SME LGEIYARGAGVERNYTKALEWLT
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTL 308
Query: 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGV 368
AA++ LYSA+NGIGYLYVKGYGV+KKNYTKA+EYFEKA DNE+ GHYNLGV+Y KGIGV
Sbjct: 309 AAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGV 368
Query: 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428
RDV+ A KYF VAANAG KAFYQLAKMFHTGVGLKKNL MAT+ YKLVAERGPWSSLS
Sbjct: 369 NRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLS 428
Query: 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488
RWALE+YLKGDVGKA +LYSRMAE+GYEVAQSNAAWILDKYGE SMCMG SGFCTD ERH
Sbjct: 429 RWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH 488
Query: 489 QCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
+ AHSLWW+ASEQGNEHAALLIGDAYYYGR
Sbjct: 489 ERAHSLWWRASEQGNEHAALLIGDAYYYGR 518
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14532716|gb|AAK64159.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/510 (74%), Positives = 433/510 (84%), Gaps = 1/510 (0%)
Query: 10 LIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAADWDDFGDSESMTEENLDP 69
+I+ LL+ S + ARP +LVLS DD+ ++D+D+FG+SE +EE LDP
Sbjct: 9 VILSLLVFSFIEFGVHARPVVLVLSNDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDP 68
Query: 70 GSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARS 128
GSW +FEP A + YY + K++SA + G+ R+MEEA E+E+A+ GDPHA+S
Sbjct: 69 GSWRSIFEPDDSTVQAASPQYYSGLKKILSAASEGNFRLMEEAVDEIEAASSAGDPHAQS 128
Query: 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188
++GF+YG+GMMRE++K K+FL+H+FAA GGN+QSKMA+A+TYLRQDMHDKAV+LYAELAE
Sbjct: 129 IMGFVYGIGMMREKSKSKSFLHHNFAAAGGNMQSKMALAFTYLRQDMHDKAVQLYAELAE 188
Query: 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKI 248
AVNSFLISKDSPV+EP RIH+G EENKGALRKSRGE+DE FQILEYQAQKGNA AMYK
Sbjct: 189 TAVNSFLISKDSPVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKN 248
Query: 249 GLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308
GLFYYFGLRGLRRD TKAL WF KA DKGEP+SME LGEIYARGAGVERNYTKALEWLT
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTL 308
Query: 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGV 368
AA++ LYSA+NGIGYLYVKGYGV+KKNYTKA+EYFEKA DNE+ GHYNLGV+Y KGIGV
Sbjct: 309 AAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGV 368
Query: 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428
RDV+ A KYF VAANAG KAFYQLAKMFHTGVGLKKNL MAT+ YKLVAERGPWSSLS
Sbjct: 369 NRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLS 428
Query: 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488
RWALE+YLKGDVGKA +LYSRMAE+GYEVAQSNAAWILDKYGE SMCMG SGFCTD ERH
Sbjct: 429 RWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH 488
Query: 489 QCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
+ AHSLWW+ASEQGNEHAALLIGDAYYYGR
Sbjct: 489 ERAHSLWWRASEQGNEHAALLIGDAYYYGR 518
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439463|ref|XP_004137505.1| PREDICTED: protein sel-1 homolog 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/524 (73%), Positives = 446/524 (85%), Gaps = 14/524 (2%)
Query: 7 TPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAAD-----WDDFGDSES 61
T +L + LIL L + + ARPF++V+SQDD+KD A D +A+ WD+FG+ ES
Sbjct: 5 TRRLQLIFLILCLSSLFINARPFLIVISQDDLKDGAPPDDSSDSANSDSADWDEFGEPES 64
Query: 62 MTEE-NLDPGSWSPVFEP-----SIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEV 115
LDPGSW P+FEP + D A YY + KMMSAV++GD+R+ME+A +++
Sbjct: 65 QNSALELDPGSWRPIFEPDSTASASDSDAPQDLYYTALGKMMSAVSSGDLRLMEDAVADI 124
Query: 116 ESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQD 174
+ A E GDPHA+SVLG LYGMG+M+E NK KAF+YHHFAAEG N QSKMA+AY Y RQ+
Sbjct: 125 DQAVAESGDPHAQSVLGLLYGMGIMKETNKAKAFMYHHFAAEG-NKQSKMALAYIYFRQE 183
Query: 175 MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234
M++KAVKLYAELAE+A+NS L+SKDSPVIEP+RIHNGAEENK ALRKSRGE+DE FQILE
Sbjct: 184 MYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILE 243
Query: 235 YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG 294
YQAQKGNAGAMY+IGLFYYFGLRGLRRD KAL WFSKA +KGEP+SME LGEIYARGAG
Sbjct: 244 YQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPKSMELLGEIYARGAG 303
Query: 295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG 354
VER+YTKAL+WLT A++Q ++AYNG+GYLYVKGYGVEK NYTKAKEYFEKAA+N+E+GG
Sbjct: 304 VERDYTKALQWLTRASKQPSFTAYNGMGYLYVKGYGVEK-NYTKAKEYFEKAAENDESGG 362
Query: 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL 414
HYNLGVMY KGIGVKRDVK AC +F++AANAG KAFYQLAKMFHTGVGLK+N+ MA+AL
Sbjct: 363 HYNLGVMYLKGIGVKRDVKKACTHFIMAANAGQPKAFYQLAKMFHTGVGLKRNIPMASAL 422
Query: 415 YKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSM 474
YKLVAERGPWSSLSRWALESYLK D+GKAF LY+RMAELGYEVAQSNAAWILDKYGE SM
Sbjct: 423 YKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSM 482
Query: 475 CMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
C+GESGFCTDAERHQ AHSLWWQASEQGNEHAALLIGDAYYYGR
Sbjct: 483 CLGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGR 526
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503099|ref|XP_004161833.1| PREDICTED: LOW QUALITY PROTEIN: protein sel-1 homolog 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/524 (72%), Positives = 444/524 (84%), Gaps = 13/524 (2%)
Query: 7 TPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAASTDDESAAD-----WDDFGDSES 61
T +L + LIL L + + ARPF++V+SQDD+KD A D +A+ WD+FG+ ES
Sbjct: 5 TRRLQLIFLILCLSSLFINARPFLIVISQDDLKDGAPPDDSSDSANSDSADWDEFGEPES 64
Query: 62 MTEE-NLDPGSWSPVFEP-----SIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEV 115
LDPGSW P+FEP + D A YY + KMMSAV++GD+R+ME+A +++
Sbjct: 65 QNSALELDPGSWRPIFEPDSTASASDSDAPQDLYYTALGKMMSAVSSGDLRLMEDAVADI 124
Query: 116 ESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQD 174
+ A E GDPHA+SVLG LYGMG+M+E NK KAF+YHHFAAEG N QSKMA+AY Y RQ+
Sbjct: 125 DQAVAESGDPHAQSVLGLLYGMGIMKETNKAKAFMYHHFAAEG-NKQSKMALAYIYFRQE 183
Query: 175 MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234
M++KAVKLYAELAE+A+NS L+SKDSPVIEP+RIHNGAEENK ALRKSRGE+DE FQILE
Sbjct: 184 MYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILE 243
Query: 235 YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG 294
YQAQKGNAGAMY+IGLFYYFGLRGLRRD KAL WFSKA +KGEP+SME LGEIYARGAG
Sbjct: 244 YQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPKSMELLGEIYARGAG 303
Query: 295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG 354
VER+YTKAL+ +T A++Q ++AYNG+GYLYVKGYGVEK+ T+AKEYFEKAA+N+E+GG
Sbjct: 304 VERDYTKALQGVTRASKQPSFTAYNGMGYLYVKGYGVEKRPVTQAKEYFEKAAENDESGG 363
Query: 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL 414
HYNLGVMY KGIGVKRDVK AC +F++AANAG KAFYQLAKMFHTGVGLK+N+ MA+AL
Sbjct: 364 HYNLGVMYLKGIGVKRDVKKACTHFIMAANAGQPKAFYQLAKMFHTGVGLKRNIPMASAL 423
Query: 415 YKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSM 474
YKLVAERGPWSSLSRWALESYLK D+GKAF LY+RMAELGYEVAQSNAAWILDKYGE SM
Sbjct: 424 YKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSM 483
Query: 475 CMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
C+GESGFCTDAERHQ AHSLWWQASEQGNEHAALLIGDAYYYGR
Sbjct: 484 CLGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGR 527
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456173|ref|XP_002282611.1| PREDICTED: protein sel-1 homolog 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/504 (76%), Positives = 435/504 (86%), Gaps = 9/504 (1%)
Query: 23 SLKARPFILVLSQDDIKDSAASTDDESA-----ADWDDFGDSESMTEENLDPGSWSPVFE 77
S ARPF+L+L+ DD+ D+A + + +A +DWD+FGDS++ ++ LDPGSW P+ E
Sbjct: 18 STLARPFVLILTPDDLSDTAPPSSESAADSGDTSDWDEFGDSDARLDDELDPGSWRPILE 77
Query: 78 PSIDPGAIN---GSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLY 134
P P YY ++KM++A ++G RVMEEA SE+E+AA G+P A+S LGFLY
Sbjct: 78 PDSGPEPKTEDEAVYYSGVAKMIAAASSGGPRVMEEAASEIEAAATAGNPLAQSALGFLY 137
Query: 135 GMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194
GMMRERNK KAF+YH+FA +GGN QSKM +AYTY RQDM+DKAV+LYAELAEIAVNSF
Sbjct: 138 ETGMMRERNKAKAFMYHYFATDGGNTQSKMVLAYTYSRQDMYDKAVELYAELAEIAVNSF 197
Query: 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYF 254
LISKDSPVIEP+R+HNGAEENK ALRKSRGE+DE FQILEYQAQKGNA AMYKIG+FYYF
Sbjct: 198 LISKDSPVIEPVRLHNGAEENKEALRKSRGEEDEDFQILEYQAQKGNAAAMYKIGIFYYF 257
Query: 255 GLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL 314
GLRGLRRDR KAL+WF KA +KGEP+SME LGEIYARGAGVERNYTKALEWLT A+ Q+L
Sbjct: 258 GLRGLRRDRAKALLWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAS-QRL 316
Query: 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374
SAYNG+GYLYVKGYGVEKKNYTKAKEYFEKA D++EAGGHYNLGVMY KG+GVKRDVKL
Sbjct: 317 PSAYNGMGYLYVKGYGVEKKNYTKAKEYFEKAVDHDEAGGHYNLGVMYLKGVGVKRDVKL 376
Query: 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALES 434
AC YF++AA G KAFYQLAKMFHTGVGLK+NL MATALYKLVAERGPWSSLSRWALES
Sbjct: 377 ACNYFIMAAKEGQPKAFYQLAKMFHTGVGLKRNLPMATALYKLVAERGPWSSLSRWALES 436
Query: 435 YLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494
YLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKY E SMC+GESGFCTDAER Q AHSL
Sbjct: 437 YLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYRERSMCIGESGFCTDAERLQRAHSL 496
Query: 495 WWQASEQGNEHAALLIGDAYYYGR 518
WWQASEQGNEHAALLIGDAYYYGR
Sbjct: 497 WWQASEQGNEHAALLIGDAYYYGR 520
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| TAIR|locus:2014109 | 678 | EBS5 "AT1G18260" [Arabidopsis | 0.969 | 0.750 | 0.735 | 4.7e-206 | |
| TAIR|locus:2035047 | 604 | AT1G73570 "AT1G73570" [Arabido | 0.944 | 0.821 | 0.431 | 2.4e-99 | |
| UNIPROTKB|Q5TEA6 | 688 | SEL1L2 "Protein sel-1 homolog | 0.779 | 0.594 | 0.351 | 4.5e-59 | |
| UNIPROTKB|E1C6X2 | 791 | SEL1L "Uncharacterized protein | 0.782 | 0.519 | 0.357 | 5.1e-58 | |
| UNIPROTKB|Q9UBV2 | 794 | SEL1L "Protein sel-1 homolog 1 | 0.780 | 0.516 | 0.357 | 1.7e-57 | |
| UNIPROTKB|F1PVX5 | 794 | SEL1L "Uncharacterized protein | 0.780 | 0.516 | 0.354 | 1.7e-57 | |
| UNIPROTKB|F1MGJ5 | 840 | SEL1L "Uncharacterized protein | 0.780 | 0.488 | 0.354 | 2.7e-57 | |
| RGD|1311278 | 688 | Sel1l2 "sel-1 suppressor of li | 0.779 | 0.594 | 0.347 | 4.6e-57 | |
| MGI|MGI:2684964 | 688 | Sel1l2 "sel-1 suppressor of li | 0.779 | 0.594 | 0.347 | 5.9e-57 | |
| RGD|620147 | 794 | Sel1l "sel-1 suppressor of lin | 0.780 | 0.516 | 0.352 | 2.5e-56 |
| TAIR|locus:2014109 EBS5 "AT1G18260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1993 (706.6 bits), Expect = 4.7e-206, P = 4.7e-206
Identities = 375/510 (73%), Positives = 425/510 (83%)
Query: 10 LIICLLILSLYPISLKARPFILVLSQDDIKXXXXXXXXXXXXXXXXXXXSESMTEENLDP 69
+I+ LL+ S + ARP +LVLS DD+ SE +EE LDP
Sbjct: 9 VILSLLVFSFIEFGVHARPVVLVLSNDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDP 68
Query: 70 GSWSPVFEPSIDP-GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARS 128
GSW +FEP A + YY + K++SA + G+ R+MEEA E+E+A+ GDPHA+S
Sbjct: 69 GSWRSIFEPDDSTVQAASPQYYSGLKKILSAASEGNFRLMEEAVDEIEAASSAGDPHAQS 128
Query: 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188
++GF+YG+GMMRE++K K+FL+H+FAA GGN+QSKMA+A+TYLRQDMHDKAV+LYAELAE
Sbjct: 129 IMGFVYGIGMMREKSKSKSFLHHNFAAAGGNMQSKMALAFTYLRQDMHDKAVQLYAELAE 188
Query: 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKI 248
AVNSFLISKDSPV+EP RIH+G EENKGALRKSRGE+DE FQILEYQAQKGNA AMYKI
Sbjct: 189 TAVNSFLISKDSPVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKI 248
Query: 249 GLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308
GLFYYFGLRGLRRD TKAL WF KA DKGEP+SME LGEIYARGAGVERNYTKALEWLT
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTL 308
Query: 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGV 368
AA++ LYSA+NGIGYLYVKGYGV+KKNYTKA+EYFEKA DNE+ GHYNLGV+Y KGIGV
Sbjct: 309 AAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGV 368
Query: 369 KRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428
RDV+ A KYF VAANAG KAFYQLAKMFHTGVGLKKNL MAT+ YKLVAERGPWSSLS
Sbjct: 369 NRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLS 428
Query: 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488
RWALE+YLKGDVGKA +LYSRMAE+GYEVAQSNAAWILDKYGE SMCMG SGFCTD ERH
Sbjct: 429 RWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH 488
Query: 489 QCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
+ AHSLWW+ASEQGNEHAALLIGDAYYYGR
Sbjct: 489 ERAHSLWWRASEQGNEHAALLIGDAYYYGR 518
|
|
| TAIR|locus:2035047 AT1G73570 "AT1G73570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 227/526 (43%), Positives = 317/526 (60%)
Query: 10 LIICLLILSLYPISLKARPFILVLSQDDIKXXXXXXXXXXXXXXXXXXXSESMTEENLDP 69
+ I L LSLY ++ARPF+LVLS +D+ SE +EE LDP
Sbjct: 9 IAISLFTLSLYIHRVQARPFVLVLSNEDLNGGFNDNGAYESSDFDEFGESEPKSEEELDP 68
Query: 70 GSWSPVFEP--SIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHAR 127
GSW +FE S + + YY + K++SA + G+ +MEEA SE++S+A GDPHA+
Sbjct: 69 GSWRRIFETNESTVHASASPQYYSGLHKILSAASEGNTTLMEEAVSEIDSSASSGDPHAQ 128
Query: 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELA 187
SV+GF+YG+GMMRE ++ K+ L+HHFAA GGN+QSKMA+A+ YLRQ+M+DKAV+LYAELA
Sbjct: 129 SVMGFVYGIGMMRETSRSKSILHHHFAAAGGNMQSKMALAFRYLRQNMYDKAVELYAELA 188
Query: 188 EIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYK 247
E AVNSFLISKDSP+ EP+RIH G EENK ALRKSRGE+DE FQILEYQA+KGN+ AM+K
Sbjct: 189 ETAVNSFLISKDSPMAEPVRIHIGTEENKDALRKSRGEEDEDFQILEYQAEKGNSVAMHK 248
Query: 248 IGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVE-RNYTKALEWL 306
IGLFYYFGLRGLRRD KAL WFSKA G LG +Y +G GV+ RNYTKA E+
Sbjct: 249 IGLFYYFGLRGLRRDHAKALYWFSKAEFNG-------LGYLYVKGYGVDKRNYTKAREYF 301
Query: 307 THAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGI 366
AA + S + +G LY+KG GV KK+ A +YF AA+ + Y L M++ G+
Sbjct: 302 EMAANNEDPSGHYNLGVLYLKGTGV-KKDVRHATKYFFVAANAGQPKAFYQLAKMFHTGV 360
Query: 367 GVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PW 424
G+ +++++A ++ + A G + + A + LK ++ A LY ++E G
Sbjct: 361 GLTKNLEMATTFYKLVAERGPWSSLSRWALEAY----LKGDVGKAFILYSRMSELGYEVA 416
Query: 425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGE--GSMCMGES--- 479
S + W ++ Y G+ +Y + + W + G ++ +G++
Sbjct: 417 QSNAAWIVDKY--GERSMCMGVYGFCTDKERHDRAHSLWWRASEQGNEHAALLIGDAYYY 474
Query: 480 GFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHSEGL 525
G T+ + + A + + A Q N A +G Y + H EGL
Sbjct: 475 GRGTERDFVRAAEAYMY-AKSQSNAQAMFNLG--YMH---EHGEGL 514
|
|
| UNIPROTKB|Q5TEA6 SEL1L2 "Protein sel-1 homolog 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 153/435 (35%), Positives = 237/435 (54%)
Query: 93 ISKMMSAVTNGD--VRVMEEATSEVESAAMEGDPHARSVLGFL--YGMGMMRERNKGKAF 148
+ KM A+ G+ V+ + A ES A EG A++ LGFL YG+GM E ++ KA
Sbjct: 146 MEKMADALLFGNFGVQNITAAIQLYESLAKEGSCKAQNALGFLSSYGIGM--EYDQAKAL 203
Query: 149 LYHHFAAEGGNIQSKMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVI 203
+Y+ F + GGN+ S+M + Y YL Q+ + A+ Y ++A+ ++F S+ PV
Sbjct: 204 IYYTFGSAGGNMMSQMILGYRYLSGINVLQNC-EVALSYYKKVADYIADTFEKSEGVPV- 261
Query: 204 EPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263
E +R+ E + S D + +Q ++ A++G+ +G + G +GL +D
Sbjct: 262 EKVRL---TERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDY 318
Query: 264 TKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGIG 322
KAL +F KAA G +M F+G++Y G A V +N A ++ + AA + +G+G
Sbjct: 319 YKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHGLG 378
Query: 323 YLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382
LY G GV NY +A +YF+KAA+ + LG MYY G G+ +D KLA KYF +A
Sbjct: 379 LLYFHGKGVPL-NYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFYLA 437
Query: 383 ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGK 442
+ +G A Y LAKM+ TG G+ ++ A LYK V E G W+ A +Y GD+
Sbjct: 438 SQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDS 497
Query: 443 AFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502
+ + Y+ +AE+GYEVAQSN+A+IL+ ++ + + A LW +A+ QG
Sbjct: 498 SLVQYALLAEMGYEVAQSNSAFILESK--------KANILEKEKMYPMALLLWNRAAIQG 549
Query: 503 NEHAALLIGDAYYYG 517
N A + IGD +YYG
Sbjct: 550 NAFARVKIGDYHYYG 564
|
|
| UNIPROTKB|E1C6X2 SEL1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 155/433 (35%), Positives = 235/433 (54%)
Query: 93 ISKMMSAVTNGD-VRVMEEATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
+ K+ A+ GD ++ +++ E+ E EG P + LGFLY G+ ++ KA +Y
Sbjct: 220 MEKVSYALLFGDYLKQNIQSSKELFEKLTEEGSPKGQMALGFLYASGLGVNSSQAKALVY 279
Query: 151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
+ F A GGN+ + M + Y Y + Q + A+ Y +A + ++ + V++
Sbjct: 280 YTFGALGGNLIAHMILGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGT-VVQR 337
Query: 206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
IR+ + E N G + E+D Q ++ A+KG+ A +G + G RG+ ++ +
Sbjct: 338 IRLADEVE-NPG-MASGMLEED-LIQYYQFVAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 394
Query: 266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV-ERNYTKALEWLTHAARQQLYSAYNGIGYL 324
A +F++AA+ G +M FLG++Y+ G+ V +N AL++ AA +G+G
Sbjct: 395 AFEYFNQAANAGNSHAMAFLGKMYSEGSDVVPQNNETALQYFKKAADMGNPVGQSGLGMA 454
Query: 325 YVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384
Y+ G GV NY A +YF+KAA+ G LG MYY GIGVKRD K A KYF +A+
Sbjct: 455 YLYGRGVPV-NYELALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQ 513
Query: 385 AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAF 444
GH AFY LA+M TG G+ ++ H A L+K V ERG WS A SY GD A
Sbjct: 514 GGHILAFYNLAQMHATGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDSNSAV 573
Query: 445 LLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE 504
+ Y +AE GYEVAQSNAA+ILD+ E S+ +GE+ A H W +A+ QG
Sbjct: 574 VQYLLLAEQGYEVAQSNAAFILDQK-EASI-VGENETYPRALLH------WNRAASQGYT 625
Query: 505 HAALLIGDAYYYG 517
A + +GD ++YG
Sbjct: 626 VARIKLGDYHFYG 638
|
|
| UNIPROTKB|Q9UBV2 SEL1L "Protein sel-1 homolog 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 155/434 (35%), Positives = 233/434 (53%)
Query: 93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
+ ++ A+ GD +A E+ E EG P ++ LGFLY G+ ++ KA +Y
Sbjct: 222 LERVSYALLFGDYLPQNIQAAREMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVY 281
Query: 151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
+ F A GGN+ + M + Y Y + Q + A+ Y +A + ++ S V++
Sbjct: 282 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 339
Query: 206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
IR+ + E N G + E+D Q ++ A+KG+ A +G + G RG+ ++ +
Sbjct: 340 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 396
Query: 266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
A +F+ AA+ G +M FLG++Y+ G+ + + N T AL + AA +G+G
Sbjct: 397 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 455
Query: 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
Y+ G GV+ NY A +YF+KAA+ G LG MYY GIGVKRD K A KYF +A+
Sbjct: 456 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 514
Query: 384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
GH AFY LA+M +G G+ ++ H A L+K V ERG WS A SY GD A
Sbjct: 515 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAA 574
Query: 444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
+ Y +AE GYEVAQSNAA+ILD+ E S+ +GE+ A H W +A+ QG
Sbjct: 575 VIQYLLLAEQGYEVAQSNAAFILDQR-EASI-VGENETYPRALLH------WNRAASQGY 626
Query: 504 EHAALLIGDAYYYG 517
A + +GD ++YG
Sbjct: 627 TVARIKLGDYHFYG 640
|
|
| UNIPROTKB|F1PVX5 SEL1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 154/434 (35%), Positives = 233/434 (53%)
Query: 93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
+ ++ A+ GD +A E+ E EG P ++ LGFLY G+ ++ KA +Y
Sbjct: 222 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVY 281
Query: 151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
+ F A GGN+ + M + Y Y + Q + A+ Y +A + ++ S V++
Sbjct: 282 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 339
Query: 206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
IR+ + E N G + E+D Q ++ A+KG+ A +G + G RG+ ++ +
Sbjct: 340 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 396
Query: 266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
A +F+ AA+ G +M FLG++Y+ G+ + + N T AL + AA +G+G
Sbjct: 397 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 455
Query: 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
Y+ G GV+ NY A +YF+KAA+ G LG MYY GIGVKRD K A KYF +A+
Sbjct: 456 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 514
Query: 384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
GH AFY LA+M +G G+ ++ H A L+K V ERG WS A SY GD A
Sbjct: 515 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAA 574
Query: 444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
+ Y +AE GYEVAQSNAA+ILD+ E ++ +GE+ A H W +A+ QG
Sbjct: 575 VIQYLLLAEQGYEVAQSNAAFILDQR-EATI-VGENETYPRALLH------WNRAASQGY 626
Query: 504 EHAALLIGDAYYYG 517
A + +GD ++YG
Sbjct: 627 TVARIKLGDYHFYG 640
|
|
| UNIPROTKB|F1MGJ5 SEL1L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.7e-57, P = 2.7e-57
Identities = 154/434 (35%), Positives = 233/434 (53%)
Query: 93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
+ ++ A+ GD +A E+ E EG P ++ LGFLY G+ ++ KA +Y
Sbjct: 268 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVY 327
Query: 151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
+ F A GGN+ + M + Y Y + Q + A+ Y +A + ++ S V++
Sbjct: 328 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 385
Query: 206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
IR+ + E N G + E+D Q ++ A+KG+ A +G + G RG+ ++ +
Sbjct: 386 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 442
Query: 266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
A +F+ AA+ G +M FLG++Y+ G+ + + N T AL + AA +G+G
Sbjct: 443 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 501
Query: 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
Y+ G GV+ NY A +YF+KAA+ G LG MYY GIGVKRD K A KYF +A+
Sbjct: 502 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 560
Query: 384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
GH AFY LA+M +G G+ ++ H A L+K V ERG WS A SY GD A
Sbjct: 561 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYSSYKDGDSNAA 620
Query: 444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
+ Y +AE GYEVAQSNAA+ILD+ E ++ +GE+ A H W +A+ QG
Sbjct: 621 VIQYLLLAEQGYEVAQSNAAFILDQR-EATI-VGENETYPRALLH------WNRAASQGY 672
Query: 504 EHAALLIGDAYYYG 517
A + +GD ++YG
Sbjct: 673 TVARIKLGDYHFYG 686
|
|
| RGD|1311278 Sel1l2 "sel-1 suppressor of lin-12-like 2 (C. elegans)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 151/435 (34%), Positives = 237/435 (54%)
Query: 93 ISKMMSAVTNGDVRVMEEATSEV---ESAAMEGDPHARSVLGFL--YGMGMMRERNKGKA 147
+ KM A+ G M+ T+ + ES A EG A++ LGFL YG+GM E ++ KA
Sbjct: 146 MEKMADALLFGSFG-MQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGM--EYDQAKA 202
Query: 148 FLYHHFAAEGGNIQSKMAVAYTYLR--QDMHDKAVKL--YAELAEIAVNSFLISKDSPVI 203
+Y+ F + GG++ S+M + Y YL + + V L Y ++A+ + S+ PV
Sbjct: 203 LIYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVALNHYKKVADYIADKLEKSEGIPV- 261
Query: 204 EPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263
E +R+ E + S D + +Q ++ A++G+ +G + G +GL +D
Sbjct: 262 EKVRL---TERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDY 318
Query: 264 TKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGIG 322
+KAL +F KAA G +M F+G++Y G A +N A ++ + AA + +G+G
Sbjct: 319 SKALYYFLKAAKAGSANAMAFIGKMYLEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLG 378
Query: 323 YLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382
LY G GV NY +A +YF+KAA+ ++LG MYY G GV +D KLA KYF +A
Sbjct: 379 LLYFHGKGVPV-NYGEALKYFQKAAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYLA 437
Query: 383 ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGK 442
+ +G A Y LA+M+ TG G+ ++ A YK V E G W+ A +Y GDV
Sbjct: 438 SQSGQPLAIYYLAEMYATGTGVLRSCRTAVEPYKGVCELGHWAEKFLTAYFAYKDGDVDS 497
Query: 443 AFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502
+ + Y+ +AE+GYEVAQSN+A+IL+ + + +G+ + + A LW +A+ QG
Sbjct: 498 SLIQYALLAEMGYEVAQSNSAFILES--KKAKILGKE------KMYPMALLLWNRAAIQG 549
Query: 503 NEHAALLIGDAYYYG 517
N A + IGD +YYG
Sbjct: 550 NAFARVKIGDYHYYG 564
|
|
| MGI|MGI:2684964 Sel1l2 "sel-1 suppressor of lin-12-like 2 (C. elegans)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 151/435 (34%), Positives = 236/435 (54%)
Query: 93 ISKMMSAVTNGDVRVMEEATSEV---ESAAMEGDPHARSVLGFL--YGMGMMRERNKGKA 147
+ KM A G M+ T+ + ES A EG A++ LGFL YG+GM E ++ KA
Sbjct: 146 MEKMADAWLFGSFG-MQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGM--EYDQAKA 202
Query: 148 FLYHHFAAEGGNIQSKMAVAYTYLR--QDMHDKAVKL--YAELAEIAVNSFLISKDSPVI 203
+Y+ F + GG++ S+M + Y YL + + V L Y ++A+ + S+ PV
Sbjct: 203 LIYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVALNHYKKVADYIADKLEKSEGIPV- 261
Query: 204 EPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263
E +R+ E + S D + +Q ++ A++G+ +G + G +GL +D
Sbjct: 262 EKVRL---TERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDY 318
Query: 264 TKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAARQQLYSAYNGIG 322
+KAL +F KAA G +M F+G++Y G A +N A ++ + AA + +G+G
Sbjct: 319 SKALYYFLKAAKAGSANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLG 378
Query: 323 YLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382
LY G GV NY +A +YF+KAA+ + LG MYY G GV +D KLA KYF +A
Sbjct: 379 LLYFHGKGVPV-NYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLA 437
Query: 383 ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGK 442
+ +G A Y LA+M+ TG G+ ++ A LYK V E G W+ A +Y GD+
Sbjct: 438 SQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDS 497
Query: 443 AFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502
+ + Y+ +AE+GYEVAQSN+A+IL+ + + +G+ + + A LW +A+ QG
Sbjct: 498 SLIQYALLAEMGYEVAQSNSAFILES--KKAKILGKE------KLYPMALLLWNRAAIQG 549
Query: 503 NEHAALLIGDAYYYG 517
N A + IGD +YYG
Sbjct: 550 NAFARVKIGDYHYYG 564
|
|
| RGD|620147 Sel1l "sel-1 suppressor of lin-12-like (C. elegans)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 153/434 (35%), Positives = 232/434 (53%)
Query: 93 ISKMMSAVTNGDVRVME-EATSEV-ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLY 150
+ ++ A+ GD +A E+ E EG P ++ LGFLY G+ ++ KA +Y
Sbjct: 222 LERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVY 281
Query: 151 HHFAAEGGNIQSKMAVAYTY-----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205
+ F A GGN+ + M + Y Y + Q + A+ Y +A + ++ S V++
Sbjct: 282 YTFGALGGNLIAHMVLGYRYWAGIGVLQSC-ESALTHYRLVANHVASDISLTGGS-VVQR 339
Query: 206 IRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
IR+ + E N G + E+D Q ++ A+KG+ A +G + G RG+ ++ +
Sbjct: 340 IRLPDEVE-NPG-MNSGMLEED-LIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQR 396
Query: 266 ALMWFSKAADKGEPQSMEFLGEIYARGAGV--ERNYTKALEWLTHAARQQLYSAYNGIGY 323
A +F+ AA+ G +M FLG++Y+ G+ + + N T AL + AA +G+G
Sbjct: 397 AFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNET-ALHYFKKAADMGNPVGQSGLGM 455
Query: 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
Y+ G GV+ NY A +YF+KAA+ G LG MYY GIGVKRD K A KYF +A+
Sbjct: 456 AYLYGRGVQV-NYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLAS 514
Query: 384 NAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443
GH AFY LA+M +G G+ ++ H A L+K V ERG WS A SY D A
Sbjct: 515 QGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDDDYNAA 574
Query: 444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503
+ Y +AE GYEVAQSNAA+ILD+ E ++ +GE+ A H W +A+ QG
Sbjct: 575 VVQYLLLAEQGYEVAQSNAAFILDQR-EATI-VGENETYPRALLH------WNRAASQGY 626
Query: 504 EHAALLIGDAYYYG 517
A + +GD ++YG
Sbjct: 627 TVARIKLGDYHFYG 640
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00150407 | hypothetical protein (683 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh4_pg.C_scaffold_16186000001 | hypothetical protein (119 aa) | • | 0.505 | |||||||
 | gw1.I.701.1 | hypothetical protein (247 aa) | • | 0.501 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 525 | |||
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 2e-29 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 2e-25 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 2e-20 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 2e-12 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 2e-07 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 2e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-05 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 1e-04 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 3e-04 | |
| pfam08238 | 38 | pfam08238, Sel1, Sel1 repeat | 7e-04 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 0.002 | |
| pfam08238 | 38 | pfam08238, Sel1, Sel1 repeat | 0.002 | |
| pfam08238 | 38 | pfam08238, Sel1, Sel1 repeat | 0.004 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (293), Expect = 2e-29
Identities = 71/270 (26%), Positives = 108/270 (40%), Gaps = 24/270 (8%)
Query: 226 DDEAFQILEYQ---AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSM 282
++ A L A+ D KAL + KAA+ G+ ++
Sbjct: 17 EENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAAL 76
Query: 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342
LG++Y G GV R+ TKA +W AA L A +G +Y G GV + KA +Y
Sbjct: 77 ALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGV-PLDLVKALKY 135
Query: 343 FEKAADN---EEAGGHYNLGVMYYKG---IGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396
+EKAA E A Y LG+ Y G + V D K A + AA G+ A L +
Sbjct: 136 YEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGR 195
Query: 397 MFHTGVGLKKNLHMATALYKLVAERGPWSSL--------------SRWALESYLKGDVGK 442
M+ G+G+ ++L A YK AE+G ++ L + + D +
Sbjct: 196 MYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQ 255
Query: 443 AFLLYSRMAELGYEVAQSNAAWILDKYGEG 472
A + ELG++ A +
Sbjct: 256 ALEWLQKACELGFDNACEALRALKIGLSAR 285
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 58/182 (31%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQ---S 281
+ +A A G A A++ +GL Y G RG+ D KAL ++ KAA G + +
Sbjct: 92 DKTKAADWYRCAAADGLAEALFNLGLMYANG-RGVPLDLVKALKYYEKAAKLGNVEAALA 150
Query: 282 MEFLGEIYARG---AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338
M LG Y G V + KAL AA A +G +Y KG GV ++ K
Sbjct: 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVP-RDLKK 209
Query: 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVK----------RDVKLACKYFLVAANAGHQ 388
A +++KAA+ + YNLG+MY G GVK D K A ++ A G
Sbjct: 210 AFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269
Query: 389 KA 390
A
Sbjct: 270 NA 271
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.3 bits (226), Expect = 2e-20
Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 25/251 (9%)
Query: 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338
P L A E + + L+ + + L G +Y K
Sbjct: 1 PLFALLLSGKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSA-YPPDYAK 59
Query: 339 AKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMF 398
A + +EKAA+ +A LG MY G GV RD A ++ AA G +A + L M+
Sbjct: 60 ALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMY 119
Query: 399 HTGVGLKKNLHMATALYKLVAERG-PWSSLSRWALES-YLKGDVG--------KAFLLYS 448
G G+ +L A Y+ A+ G ++L+ + L YL G KA LY
Sbjct: 120 ANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179
Query: 449 RMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ-ASEQGNEHAA 507
+ AELG AQ + +K G + + W++ A+EQG+ A
Sbjct: 180 KAAELGNPDAQLLLGRMYEK-----------GLGVPRDLKKAFR--WYKKAAEQGDGAAC 226
Query: 508 LLIGDAYYYGR 518
+G Y G
Sbjct: 227 YNLGLMYLNGE 237
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 2e-12
Identities = 68/257 (26%), Positives = 103/257 (40%), Gaps = 64/257 (24%)
Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN--IQSKMAV 166
+A E AA GD A ++LG +YG G R+K KA ++ AA G + +
Sbjct: 58 AKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGL 117
Query: 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226
Y + + V L +
Sbjct: 118 MY------ANGRGVPL------------------------------------------DL 129
Query: 227 DEAFQILEYQAQKGNAGA---MYKIGLFYYFGL--RGLRRDRTKALMWFSKAADKGEPQS 281
+A + E A+ GN A MY++GL Y GL + D KAL + KAA+ G P +
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDA 189
Query: 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEK-------- 333
LG +Y +G GV R+ KA W AA Q +A +G +Y+ G GV+K
Sbjct: 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAK 249
Query: 334 -KNYTKAKEYFEKAADN 349
++ +A E+ +KA +
Sbjct: 250 EEDKKQALEWLQKACEL 266
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 54/213 (25%), Positives = 81/213 (38%), Gaps = 51/213 (23%)
Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
+A AA +G A LG +Y G + KA Y+ AA+ GN+++ +A
Sbjct: 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALA-- 150
Query: 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDD 227
M+ + + L +AV D
Sbjct: 151 -------MYRLGLAYLSGLQALAVAYD-------------------------------DK 172
Query: 228 EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGE 287
+A + A+ GN A +G Y GL G+ RD KA W+ KAA++G+ + LG
Sbjct: 173 KALYLYRKAAELGNPDAQLLLGRMYEKGL-GVPRDLKKAFRWYKKAAEQGDGAACYNLGL 231
Query: 288 IYARGAGV----------ERNYTKALEWLTHAA 310
+Y G GV E + +ALEWL A
Sbjct: 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC 264
|
Length = 292 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-06
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH 387
A YNLG MY G+GV +D++ A +Y+ AA G+
Sbjct: 1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-05
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA--ADNEE 351
+Y +ALE+ A AY + Y K Y +A E +EKA D +
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-----LGKYEEALEDYEKALELDPDN 67
Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382
A +YNLG+ YYK + A + + A
Sbjct: 68 AKAYYNLGLAYYK----LGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 1e-04
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG 277
A A Y +G Y +GL G+ +D KAL ++ KAA+ G
Sbjct: 1 AEAQYNLGQMYEYGL-GVPKDLEKALEYYKKAAELG 35
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313
++ LG++Y G GV ++ KALE+ AA
Sbjct: 1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 7e-04
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 356 YNLGV--MYYKGIGVKRDVKLACKYFLVAANAGH 387
YNLG+ MY G+GV +D + A +++ AA G+
Sbjct: 5 YNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQGN 38
|
This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349
A +G +Y G GV K+ KA EY++KAA+
Sbjct: 3 AQYNLGQMYEYGLGV-PKDLEKALEYYKKAAEL 34
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 242 AGAMYKIGLFYYFGL-RGLRRDRTKALMWFSKAADKG 277
A A Y +GL+Y + G+ +D KAL W+ KAA++G
Sbjct: 1 AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQG 37
|
This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38 |
| >gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (80), Expect = 0.004
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 279 PQSMEFLG--EIYARGAGVERNYTKALEWLTHAARQ 312
++ LG +Y G GV ++Y KALEW AA Q
Sbjct: 1 AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQ 36
|
This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.95 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 99.85 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.78 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.77 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.77 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.75 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.66 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.65 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.65 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 99.63 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.59 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.59 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.58 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.57 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.57 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.57 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.53 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.52 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.47 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 99.47 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.45 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.43 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.42 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.41 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.3 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.29 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.28 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.22 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.2 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.17 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.14 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.14 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.08 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.96 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.94 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.9 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.89 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.87 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.86 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.83 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.8 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.78 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.71 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.7 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.69 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.62 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.61 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.52 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.48 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.47 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.45 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.44 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.38 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.36 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.34 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.34 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.31 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.31 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.31 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.3 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.29 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.28 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.25 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.25 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.19 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.14 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.12 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.1 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.08 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.05 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.05 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.03 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.99 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.98 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.98 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.93 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.9 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.87 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.85 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.76 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.73 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.73 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.66 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.63 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.61 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.6 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.59 | |
| smart00671 | 36 | SEL1 Sel1-like repeats. These represent a subfamil | 97.58 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.42 | |
| PF08238 | 39 | Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r | 97.42 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.29 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.24 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.21 | |
| smart00671 | 36 | SEL1 Sel1-like repeats. These represent a subfamil | 97.21 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.01 | |
| PF08238 | 39 | Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r | 97.01 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.97 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.96 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.86 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.83 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.62 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.48 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.46 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.4 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.39 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.33 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.33 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.31 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.28 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.27 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.23 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.2 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.0 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.99 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.6 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.58 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.47 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.39 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.36 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.3 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.18 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.01 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.97 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.77 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.58 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 94.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.91 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.89 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 93.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.07 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 92.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 92.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.35 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.96 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.93 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.5 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 90.87 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.69 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.54 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 90.4 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.25 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 89.69 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 89.5 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 88.72 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.63 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.23 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 88.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.88 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 87.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.65 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 87.65 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.53 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.87 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.87 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.96 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.92 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 85.36 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 85.15 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.52 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.29 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 84.02 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 83.61 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 83.25 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 81.56 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 81.51 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 81.3 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 80.73 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 80.57 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 80.1 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=273.89 Aligned_cols=365 Identities=19% Similarity=0.120 Sum_probs=321.2
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--CH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--NI 160 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~ 160 (525)
++++-.+|.++-. .++++.|+.+|+.+. ++.+.+++.++|..+.. .++.+.|...|..|++.+ ..
T Consensus 116 ae~ysn~aN~~ke-------rg~~~~al~~y~~aiel~p~fida~inla~al~~----~~~~~~a~~~~~~alqlnP~l~ 184 (966)
T KOG4626|consen 116 AEAYSNLANILKE-------RGQLQDALALYRAAIELKPKFIDAYINLAAALVT----QGDLELAVQCFFEALQLNPDLY 184 (966)
T ss_pred HHHHHHHHHHHHH-------hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHh----cCCCcccHHHHHHHHhcCcchh
Confidence 4455555655443 788899999998875 66788999999998888 788889999999988764 57
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH--H
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA--Q 238 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~ 238 (525)
.+...+|.++...|+..+|...|.++++..+.. ...+.++|-+...+|+...|+..|++++ +
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f----------------AiawsnLg~~f~~~Gei~~aiq~y~eAvkld 248 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCF----------------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD 248 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCce----------------eeeehhcchHHhhcchHHHHHHHHHHhhcCC
Confidence 788889999999999999999999988764432 2346789999999999999999999985 5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
|+.++|+++||.+|... +.+++|+..|.+|+.. +++.++-+||.+|.. +|..+.|+..|+++++.. .
T Consensus 249 P~f~dAYiNLGnV~ke~-----~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye----qG~ldlAI~~Ykral~~~P~F 319 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEA-----RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE----QGLLDLAIDTYKRALELQPNF 319 (966)
T ss_pred CcchHHHhhHHHHHHHH-----hcchHHHHHHHHHHhcCCcchhhccceEEEEec----cccHHHHHHHHHHHHhcCCCc
Confidence 68999999999999877 4999999999999976 788999999999999 999999999999999874 8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 390 (525)
++++.+||..+.. +|+..+|..+|.+++.. ..++++++||.+|.+ ++.+++|...|+++++. +.+.+
T Consensus 320 ~~Ay~NlanALkd-----~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa 390 (966)
T KOG4626|consen 320 PDAYNNLANALKD-----KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAA 390 (966)
T ss_pred hHHHhHHHHHHHh-----ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhh
Confidence 9999999999976 68999999999999987 689999999999999 99999999999999987 67889
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHH
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWIL 466 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~ 466 (525)
+.+||.+|.. ++++++|+..|+.|+.+.| ++++.++|.+|-.+|+...|+.+|.+|+..+ ..+|+.|||.+|
T Consensus 391 ~nNLa~i~kq----qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 391 HNNLASIYKQ----QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhHHHHHHh----cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 9999999998 9999999999999999987 6789999999999999999999999999875 678999999999
Q ss_pred hhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
.. .++..+||.-|+.|++.. .++|.-+|..+.
T Consensus 467 kD----------------sGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 467 KD----------------SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred hc----------------cCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 76 668899999999999864 688888877654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=272.79 Aligned_cols=386 Identities=16% Similarity=0.121 Sum_probs=337.3
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.+||.+|.++-... -++.+.+.+..++-++.. ..++++....-..+. .+.-++++.++|.++.. .
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q-------~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke----r 129 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ-------GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE----R 129 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhc-------ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH----h
Confidence 35666666555444 455666666677776665 445666655555544 34558899999999999 9
Q ss_pred CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 142 RNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
++.+.|+.+|+.+++. +.++|+.++|.++..+|+.+.|...|.+++.++|..... ...+|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca----------------~s~lgnL 193 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA----------------RSDLGNL 193 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh----------------hcchhHH
Confidence 9999999999999875 689999999999999999999999999999987765433 4568888
Q ss_pred hhccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~ 295 (525)
....|+..+|...|.++++. ..+-++.+||.++... ++...|+.+|++|++. ..+.++.+||.+|..
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~-----Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke---- 264 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQ-----GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE---- 264 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhc-----chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH----
Confidence 99999999999999999664 7888999999999777 4999999999999986 568999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.+.+++|+..|.+|+... ++.++.+||-+|.. +|..+-|+..|+++++. +.++++.+||..+.. .++
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-----qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~ 335 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-----QGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGS 335 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhccceEEEEec-----cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccc
Confidence 999999999999998764 88999999999976 78999999999999987 689999999999999 999
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
..+|..+|.+++.. .+++++++||.+|.. .+.++.|...|+++++..+ ..++.+||.+|.++|++++|+.+|
T Consensus 336 V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 99999999999988 799999999999998 9999999999999999976 678999999999999999999999
Q ss_pred HHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Q 009801 448 SRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYY 516 (525)
Q Consensus 448 ~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~ 516 (525)
++|+.. ...+++.|+|..|-. +++...|+..|.+|+..+ -.+|+.+||.+|..
T Consensus 412 kealrI~P~fAda~~NmGnt~ke----------------~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 412 KEALRIKPTFADALSNMGNTYKE----------------MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred HHHHhcCchHHHHHHhcchHHHH----------------hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 999976 578899999999987 778899999999999877 58999999999973
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=246.77 Aligned_cols=392 Identities=31% Similarity=0.399 Sum_probs=320.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhcCCC-ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcc-----ccHHHHHH-
Q 009801 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMM-RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQ-----DMHDKAVK- 181 (525)
Q Consensus 109 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g-~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~-----~~~~~A~~- 181 (525)
..+...++.+.+.++..+...++..+..|.+ ...+..++...|...+..++..+...++..+... ...+.++.
T Consensus 108 ~~~~~~~~~~~~sg~~~a~~~l~~~~~~~~~~~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~ 187 (552)
T KOG1550|consen 108 EFAVEEYELAAKSGNPKAHRNLGFKYLSGLSGVTSSQAKALVHYELSALGSNSPSSMRLGFSYLHGLGGVRRSEEKALSK 187 (552)
T ss_pred cccchhhhcccccCCHHHHHHHHHhhhhhcCCCCccHhhcchhhhccccCCCCcchhhhhhhhhccCCCccchhhHhhhh
Confidence 6788888888888999999999999999887 7888899999999997778888888888888774 34556666
Q ss_pred HHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 009801 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 182 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
.+..+................... .......+......++..+|+++++.+++.++..++..+|.+|..+..++.+
T Consensus 188 ~~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~ 263 (552)
T KOG1550|consen 188 HYNKAASSTSSDATFSLGPNAQRL----QLSLEGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQ 263 (552)
T ss_pred hhhhccCccccccccCCCcchhhh----hccccccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccc
Confidence 665554432222111111100000 0111112222222334678999999999999999999999999999779999
Q ss_pred CHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCc
Q 009801 262 DRTKALMWFSKAAD-------KGEPQSMEFLGEIYARGAGVER-NYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 262 ~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 333 (525)
|.++|+.||+.+++ .+++.+.+.+|.+|..|.++.. |++.|+.+|.++++.+++.+++.+|.++..|. ..
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~--~~ 341 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT--KE 341 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC--cc
Confidence 99999999999988 7889999999999999988777 99999999999999999999999999999876 23
Q ss_pred cCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 334 KNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
.|+.+|.+||..|+..|++.|+++++.+|..|.++..+..+|..||+++++++++.+.+.++.+++.|. +.+..+..
T Consensus 342 ~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~---~~~~~~~~ 418 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV---GRYDTALA 418 (552)
T ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc---ccccHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999875 56666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCC
Q 009801 414 LYKLVAERGPWSSLSRWALESYLK----------GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCT 483 (525)
Q Consensus 414 ~~~~a~~~~~~~a~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~ 483 (525)
.+....+.+...++.+...+.... .+...+...+.++..+|++.+...++.+|+. | ..
T Consensus 419 ~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~-----------g-~g 486 (552)
T KOG1550|consen 419 LYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYY-----------G-LG 486 (552)
T ss_pred HHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeee-----------c-CC
Confidence 666666666655555444443332 2788899999999999999999999999976 3 33
Q ss_pred ChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHcccccCC
Q 009801 484 DAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHS 522 (525)
Q Consensus 484 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~ 522 (525)
+..+++.|..+|.+|.+++ +.++++||.||++|.|+++
T Consensus 487 ~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~ 524 (552)
T KOG1550|consen 487 TGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV 524 (552)
T ss_pred CCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch
Confidence 3668999999999999999 9999999999999999985
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-25 Score=247.57 Aligned_cols=404 Identities=15% Similarity=0.099 Sum_probs=264.6
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.+++..|...+++. ..++++..++.+|.++.. .+++++|+..|+++. ++++..+++.+|.++.. .
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~ 512 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-------KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ----E 512 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHh-------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----C
Confidence 34555666655555 344556667777777665 667778888887754 56677777777877777 7
Q ss_pred CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC--------CCCCch-------
Q 009801 142 RNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK--------DSPVIE------- 204 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~--------~~~~~~------- 204 (525)
+++++|+++|+++++. ++..++..++.++...|++++|+.+++++++..+....... ......
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7778888888777653 46777777777777777777777777777665443211000 000000
Q ss_pred ---hhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--C
Q 009801 205 ---PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G 277 (525)
Q Consensus 205 ---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~ 277 (525)
...........++.++...|++++|+..++++.+ +.++.++..+|.++... +++++|+.+|+++++. +
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~ 667 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM-----KNYAKAITSLKRALELKPD 667 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCC
Confidence 0000011223344444455555555555555432 23445555555555444 2555555555555443 3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhH
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGG 354 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a 354 (525)
+..++..++.++.. .+++++|+..+++..+.. ++..+..+|.++.. .+++++|+.+|+++++.. +..+
T Consensus 668 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~ 738 (899)
T TIGR02917 668 NTEAQIGLAQLLLA----AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR-----QKDYPAAIQAYRKALKRAPSSQN 738 (899)
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCCCchH
Confidence 34455555555555 555555555555544432 45556666666655 457888888888877652 3466
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW 430 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 430 (525)
...++.++.. .+++++|+..++++++. ++..+++.+|.+|.. .+++++|+.+|+++++..| +.++..+
T Consensus 739 ~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 739 AIKLHRALLA----SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA----QKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7778888887 78888888888887765 567788888888887 8888888888888888764 5567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHA 506 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 506 (525)
++++...|+ .+|+.+++++++. +++..+.++|.++.. .+++++|+.+|+++++.+ ++++
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE----------------KGEADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhhCCCChHH
Confidence 888888888 7788888888775 577778888888877 678999999999999865 6889
Q ss_pred HHHHHHHHHccccc
Q 009801 507 ALLIGDAYYYGRVR 520 (525)
Q Consensus 507 ~~~lg~~y~~g~g~ 520 (525)
++.++.+|. ..|.
T Consensus 874 ~~~l~~~~~-~~g~ 886 (899)
T TIGR02917 874 RYHLALALL-ATGR 886 (899)
T ss_pred HHHHHHHHH-HcCC
Confidence 999999987 4443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-25 Score=232.85 Aligned_cols=369 Identities=17% Similarity=0.048 Sum_probs=292.8
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhc-CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQ 161 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~ 161 (525)
+..+..+|..++. .+++++|+..|+++.+. .++..+.++|.+|.. .+++++|+..++++++. ++..
T Consensus 127 a~~~k~~G~~~~~-------~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~ 195 (615)
T TIGR00990 127 AAKLKEKGNKAYR-------NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSK 195 (615)
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHH
Confidence 3445677777776 88999999999997643 357888999999998 89999999999999875 5889
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh----------------------hccCCCCCch---------------
Q 009801 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF----------------------LISKDSPVIE--------------- 204 (525)
Q Consensus 162 a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~----------------------~~~~~~~~~~--------------- 204 (525)
+++.+|.+|...|++++|+..|..+...++... ....+.....
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 999999999999999999988866543211000 0000000000
Q ss_pred -------hhhhcccc---hhhhhHh---hhccCCcHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCccCHHHH
Q 009801 205 -------PIRIHNGA---EENKGAL---RKSRGEDDEAFQILEYQAQK-----GNAGAMYKIGLFYYFGLRGLRRDRTKA 266 (525)
Q Consensus 205 -------~~~~~~~~---~~~~~~~---~~~~~~~~~A~~~~~~~~~~-----~~~~a~~~Lg~~y~~~~~~~~~~~~~A 266 (525)
...+.... ...++.. ....+++++|++.|+++++. ..+.++..+|.++... +++++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-----g~~~eA 350 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK-----GKHLEA 350 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-----CCHHHH
Confidence 00000000 0111111 12346899999999999864 4677899999999887 499999
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 267 LMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 267 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
+.+|+++++. +++.++..+|.++.. .+++++|+.+|+++++.. ++.+++.+|.++.. .|++++|+.+
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~ 421 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLE----LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-----KGEFAQAGKD 421 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHH
Confidence 9999999875 567899999999998 999999999999998874 79999999999987 6799999999
Q ss_pred HHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 343 FEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418 (525)
Q Consensus 343 ~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a 418 (525)
|+++++. ++..++..+|.++.. .+++++|+..|+++++. .++.++..+|.++.. .+++++|+..|+++
T Consensus 422 ~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~A 493 (615)
T TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence 9999987 567889999999999 99999999999999876 678999999999998 99999999999999
Q ss_pred HHcCChH--------HHHHHHHHHHh-cCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHh
Q 009801 419 AERGPWS--------SLSRWALESYL-KGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAER 487 (525)
Q Consensus 419 ~~~~~~~--------a~~~l~~~~~~-~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 487 (525)
++..+.. .+...+..++. .|++++|+.+++++++. .+..++..+|.++.. .++
T Consensus 494 l~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~----------------~g~ 557 (615)
T TIGR00990 494 IELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQ----------------QGD 557 (615)
T ss_pred HhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----------------ccC
Confidence 9986421 12233334444 79999999999999877 466688899999988 778
Q ss_pred HHHHHHHHHHHHhCC
Q 009801 488 HQCAHSLWWQASEQG 502 (525)
Q Consensus 488 ~~~A~~~~~~a~~~~ 502 (525)
+++|+.+|+++++..
T Consensus 558 ~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 558 VDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=241.53 Aligned_cols=401 Identities=17% Similarity=0.145 Sum_probs=288.8
Q ss_pred ccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCc
Q 009801 65 ENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMR 140 (525)
Q Consensus 65 ~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~ 140 (525)
..+++..|+..|+++ ..+.++.+.+.++..++. .+++++|+..+++.. .++++..+..+|.+|..
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 477 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLR-------SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG---- 477 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh-------cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHh----
Confidence 456778888888887 445566777777777765 788999999999954 56788999999999998
Q ss_pred cCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc--------CCCCCchhh----
Q 009801 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS--------KDSPVIEPI---- 206 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~--------~~~~~~~~~---- 206 (525)
.+++++|+.+|+++++ .++..+++.+|.++...|++++|+..|+++++..+.+.... .........
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999976 46889999999999999999999999999987654432110 000000000
Q ss_pred ---hh---cccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--
Q 009801 207 ---RI---HNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (525)
Q Consensus 207 ---~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (525)
.. .......++.++...|++++|+..+++..+ +.++.++..+|.++... +++++|+.+|+++++.
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-----GDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCC
Confidence 00 011123445555666666677766666643 35666677777777665 3777777777776653
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
.++.++..+|.+|.. .+++++|+.+|+++++.. +..++..++.++.. .+++++|+.++++..+. .++
T Consensus 633 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~ 703 (899)
T TIGR02917 633 DSALALLLLADAYAV----MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA-----AKRTESAKKIAKSLQKQHPKAA 703 (899)
T ss_pred CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCcCCh
Confidence 456666677777766 677777777777776543 56666667766654 45677777777766654 355
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
..+..+|.++.. .+++++|+.+|++++.. .+......++.++.. .+++++|+..++++++..+ ..+++.
T Consensus 704 ~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 704 LGFELEGDLYLR----QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA----SGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 667778888887 88888888888888776 334667778888876 7888888888888887753 567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC--CCHH
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEH 505 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 505 (525)
+|.++...|++++|+.+|+++++. .++.++.++++++.. .++ .+|+.+++++++. +++.
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----------------~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE----------------LKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----------------cCc-HHHHHHHHHHHhhCCCCcH
Confidence 888888888888888888888766 467778888888876 445 6688888888775 3677
Q ss_pred HHHHHHHHHH
Q 009801 506 AALLIGDAYY 515 (525)
Q Consensus 506 a~~~lg~~y~ 515 (525)
.+..+|.+|.
T Consensus 839 ~~~~~~~~~~ 848 (899)
T TIGR02917 839 ILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHH
Confidence 7778888876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-24 Score=223.11 Aligned_cols=338 Identities=15% Similarity=0.055 Sum_probs=273.6
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~ 202 (525)
+..+..+|..|.. .+++++|+++|++++... ++..+.++|.+|...+++++|+..+.++++.++...
T Consensus 127 a~~~k~~G~~~~~----~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~-------- 194 (615)
T TIGR00990 127 AAKLKEKGNKAYR----NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS-------- 194 (615)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH--------
Confidence 4557788999988 999999999999999863 577899999999999999999999999998765432
Q ss_pred chhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCC--------------------------------HHHHHHHHH
Q 009801 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN--------------------------------AGAMYKIGL 250 (525)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------~~a~~~Lg~ 250 (525)
.....++.++...|++++|+..+..+...+. ..+...+|.
T Consensus 195 --------~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~ 266 (615)
T TIGR00990 195 --------KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN 266 (615)
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 2366788899999999999887765432110 001111222
Q ss_pred HH---------------------------------HhcCCCCccCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcC
Q 009801 251 FY---------------------------------YFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARG 292 (525)
Q Consensus 251 ~y---------------------------------~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g 292 (525)
.+ ... ...+++++|+.+|+++++.+ .+.++..+|.++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~--~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~- 343 (615)
T TIGR00990 267 YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPES--KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL- 343 (615)
T ss_pred HHHHccCCcchhhhhcccccccccccchHHHHHHHHHh--hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-
Confidence 11 100 11247899999999999753 45789999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCC
Q 009801 293 AGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~ 368 (525)
.+++++|+.+|+++++.. ...++..+|.++.. .+++++|+.+|+++++. +++.+++.+|.++..
T Consensus 344 ---~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~---- 411 (615)
T TIGR00990 344 ---KGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-----LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI---- 411 (615)
T ss_pred ---cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence 999999999999999864 67899999999986 56999999999999876 578999999999999
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
.+++++|+.+|+++++. ++..++..+|.++.. .+++++|+..|++++...| +.++..+|.++...|++++|+
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999987 578899999999998 9999999999999998864 678889999999999999999
Q ss_pred HHHHHHHHcCh--HH------HHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 445 LLYSRMAELGY--EV------AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 445 ~~~~~a~~~~~--~~------a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
..|++|++... .. .+.+.+..++.. .+++++|+.+++++++.+ +..++..||.+|
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~---------------~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQW---------------KQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHH---------------hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999998732 11 222333333321 578999999999998875 677888999998
Q ss_pred H
Q 009801 515 Y 515 (525)
Q Consensus 515 ~ 515 (525)
.
T Consensus 553 ~ 553 (615)
T TIGR00990 553 L 553 (615)
T ss_pred H
Confidence 7
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-25 Score=224.88 Aligned_cols=394 Identities=32% Similarity=0.411 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccc-----cHHHHHHH
Q 009801 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQD-----MHDKAVKL 182 (525)
Q Consensus 108 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~-----~~~~A~~~ 182 (525)
...++..+...+..+...+..........+.-... ...+...+..+...++..+...++..+.... ...+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sg~~~a~~~l~~~~~~~~~~~~~~~~~a~~~ 150 (552)
T KOG1550|consen 72 LSLALRSLDKAASESDTNARNDFSSSASEPDYLIF-IEFAVEEYELAAKSGNPKAHRNLGFKYLSGLSGVTSSQAKALVH 150 (552)
T ss_pred cchhHHHhhhhcccchhhhhhhhHHHhhcCCcccc-ccccchhhhcccccCCHHHHHHHHHhhhhhcCCCCccHhhcchh
Confidence 34444555555555555555555555554221111 4688889999999999999999999888754 35567777
Q ss_pred HHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHH-HHHHHHHcCCHHHHHHHH------HHHHhc
Q 009801 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQ-ILEYQAQKGNAGAMYKIG------LFYYFG 255 (525)
Q Consensus 183 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~~a~~~Lg------~~y~~~ 255 (525)
|........ ........... ...+.......+.++. .+.....+..+.+.+.+| .+...+
T Consensus 151 y~~~~~~~~----------~~~~~~~~~~~---~~~~~~v~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 217 (552)
T KOG1550|consen 151 YELSALGSN----------SPSSMRLGFSY---LHGLGGVRRSEEKALSKHYNKAASSTSSDATFSLGPNAQRLQLSLEG 217 (552)
T ss_pred hhccccCCC----------Ccchhhhhhhh---hccCCCccchhhHhhhhhhhhccCccccccccCCCcchhhhhccccc
Confidence 665411100 00001110000 0011112334566777 777777776666666666 555555
Q ss_pred CCCCccC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHH
Q 009801 256 LRGLRRD----RTKALMWFSKAADKGEPQSMEFLGEIYARG-AGVERNYTKALEWLTHAAR-------QQLYSAYNGIGY 323 (525)
Q Consensus 256 ~~~~~~~----~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g-~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~ 323 (525)
.+...+ ...|+++++.+++.++..+...+|.+|..| .|+.+|.+.|+.||+.+++ .+++.+++.+|.
T Consensus 218 -~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 218 -EGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGR 296 (552)
T ss_pred -cCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHH
Confidence 344444 688999999999999999999999999999 9999999999999999998 788899999999
Q ss_pred HHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Q 009801 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 324 ~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g 403 (525)
+|..|.++..-|++.|+.+|.++.+.+++.+.+.||.+|..|. ..+|..+|.+||..|++.|+..|+++++.+|..|.|
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLG 375 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Confidence 9999887655499999999999999999999999999999986 457899999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCC
Q 009801 404 LKKNLHMATALYKLVAERGPWSSLSRWALESYLK-GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFC 482 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~ 482 (525)
+..+.++|..||+++++.+++.+.+.++..+..- +++..+...+....+.++..++.+.+++.+... ..+. ..
T Consensus 376 v~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~---~~~~---~~ 449 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSE---EDLF---SR 449 (552)
T ss_pred cCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcc---cccc---cc
Confidence 9999999999999999999999888887765543 899999999999999999999999999998742 1111 11
Q ss_pred CChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHcccccCCC
Q 009801 483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHSE 523 (525)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~ 523 (525)
....+...++..|.++..+|+.++...||++|++|+||.+|
T Consensus 450 ~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 450 GVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred ccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCC
Confidence 22457789999999999999999999999999999999886
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=235.69 Aligned_cols=385 Identities=13% Similarity=0.064 Sum_probs=288.4
Q ss_pred ccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh--cCChH--------------H
Q 009801 65 ENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPH--------------A 126 (525)
Q Consensus 65 ~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~--------------a 126 (525)
..+++.+|+..|+++ .+|+++++++.+|.+++. .+++++|+.+|+++.+ +.+.. .
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~-------~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ-------QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 346788899999888 667889999999999887 8899999999999764 43332 1
Q ss_pred HHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCC-----
Q 009801 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD----- 199 (525)
Q Consensus 127 ~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~----- 199 (525)
...+|.++.. .+++++|+..|++++.. ++..+++.||.++...|++++|++.|+++++..+.+......
T Consensus 354 ~~~~g~~~~~----~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 354 LIQQGDAALK----ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2345777777 88999999999999874 688999999999999999999999999999876553211000
Q ss_pred --CCCchhh-------------------hhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcC
Q 009801 200 --SPVIEPI-------------------RIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGL 256 (525)
Q Consensus 200 --~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~ 256 (525)
...-... .+........+.++...|++++|++.+++++. |+++.+++.+|.+|...+
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 0000000 00011122345556667777777777777644 467777777777777663
Q ss_pred CCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHH
Q 009801 257 RGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL------------YSAYNGIG 322 (525)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~------------~~a~~~lg 322 (525)
++++|+..|+++++. +++.+++.++.++.. .++.++|+.+++++..... ......++
T Consensus 510 -----~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 510 -----QRSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred -----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 777777777777653 566777777766666 6777777777776543211 11123445
Q ss_pred HHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 009801 323 YLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (525)
Q Consensus 323 ~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~ 400 (525)
..+.. .|++++|+.+++ ....++..+..+|.+|.. .+++++|+..|+++++. +++.++..++.+|..
T Consensus 581 ~~l~~-----~G~~~eA~~~l~--~~p~~~~~~~~La~~~~~----~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 581 NRLRD-----SGKEAEAEALLR--QQPPSTRIDLTLADWAQQ----RGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHH-----CCCHHHHHHHHH--hCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 55544 457888888777 244678889999999999 99999999999999976 789999999999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--h------HHHHHHHHHHHhhhC
Q 009801 401 GVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y------EVAQSNAAWILDKYG 470 (525)
Q Consensus 401 g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~------~~a~~~la~~~~~~~ 470 (525)
.+++++|+..++++++.. +..++..+|.++...|++++|+..|++++... + ...+..+|.++..
T Consensus 650 ----~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~-- 723 (1157)
T PRK11447 650 ----QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ-- 723 (1157)
T ss_pred ----CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH--
Confidence 899999999999999875 46778899999999999999999999998752 1 2345567888877
Q ss_pred CCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 471 EGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.+++++|+.+|++|+.
T Consensus 724 --------------~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 724 --------------TGQPQQALETYKDAMV 739 (1157)
T ss_pred --------------cCCHHHHHHHHHHHHh
Confidence 6789999999999974
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-22 Score=225.88 Aligned_cols=352 Identities=14% Similarity=0.091 Sum_probs=260.2
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--CHH--------------HHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--NIQ--------------SKMAV 166 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~--------------a~~~l 166 (525)
.+++++|+..|+++. +|.++.+++.||.+|.. .+++++|+.+|+++++.+ +.. ....+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ----QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 678999999999964 67899999999999998 899999999999998742 221 23456
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHH
Q 009801 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGA 244 (525)
Q Consensus 167 a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a 244 (525)
|..+...+++++|+..|+++++..+.+. .....++.++...|++++|++.|+++.. ++++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~----------------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDS----------------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8888999999999999999998755432 2355688999999999999999999865 578889
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 245 MYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 245 ~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
+..++.+|... ++++|+.++++..... ....+..+|.++.. .+++++|+.+|+++++..
T Consensus 422 ~~~L~~l~~~~------~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~----~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 422 VRGLANLYRQQ------SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN----QGKWAQAAELQRQRLALD 491 (1157)
T ss_pred HHHHHHHHHhc------CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 99999988543 5566666655422110 11234455666665 666666666666666543
Q ss_pred --CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH-------
Q 009801 314 --LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA------- 382 (525)
Q Consensus 314 --~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a------- 382 (525)
++.+++.+|.+|.. .+++++|+..++++++. +++.+++.++.++.. .++.++|+..++++
T Consensus 492 P~~~~~~~~LA~~~~~-----~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQ-----AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcCh
Confidence 55566666666654 44666666666666543 355555555555544 44555554444331
Q ss_pred -----------------------------------HHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 383 -----------------------------------ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 383 -----------------------------------~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
....++..+..+|.++.. .+++++|+..|+++++..| +.
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~----~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ----RGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Confidence 123566788899999998 9999999999999999874 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG- 502 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 502 (525)
++..++.++...|++++|+..++++++. .++.++..+|.++.. .+++++|+.+|++++...
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~----------------~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA----------------LGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh----------------CCCHHHHHHHHHHHhhhCc
Confidence 8999999999999999999999999876 577888999999987 678999999999998753
Q ss_pred -C------HHHHHHHHHHHH
Q 009801 503 -N------EHAALLIGDAYY 515 (525)
Q Consensus 503 -~------~~a~~~lg~~y~ 515 (525)
+ ...+..+|.+|.
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHH
Confidence 1 134455677776
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-22 Score=200.68 Aligned_cols=396 Identities=18% Similarity=0.186 Sum_probs=223.5
Q ss_pred CCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCC
Q 009801 68 DPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERN 143 (525)
Q Consensus 68 ~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d 143 (525)
+...|...|+++ ++|.+.+++..||.+-+. +.+...+++++..+.++ .++.||.+...|+..|.. .+|
T Consensus 214 ~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~----~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~d 285 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDPTCVSALVALGEVDLN----FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKD 285 (1018)
T ss_pred chhhHHHHHHHHHhcChhhHHHHHHHHHHHHH----ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----ccc
Confidence 344555556666 555556666666655443 22345566666666664 345566666666666665 666
Q ss_pred HHHHHHHHHHHHcCC-----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhH
Q 009801 144 KGKAFLYHHFAAEGG-----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (525)
Q Consensus 144 ~~~A~~~~~~a~~~~-----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
+..+..+..-++... -.++++.+|..|..+|++++|..+|.++...++.++.. +...+|.
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---------------~~~GlgQ 350 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---------------PLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---------------cccchhH
Confidence 666666666665432 23456666666666666666666666666555544221 1334555
Q ss_pred hhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHH-----
Q 009801 219 LRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIY----- 289 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y----- 289 (525)
++...|+...|+..|++... |++.+.+.-||.+|.... ......++|..+..++++. .+..+|..++.+|
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 55555555555555555433 245555555555554331 1111234444444444433 2334444444444
Q ss_pred ---------------------------------HcCCCCCCCHHHHHHHHHHHHHc----C--------CHHHHHHHHHH
Q 009801 290 ---------------------------------ARGAGVERNYTKALEWLTHAARQ----Q--------LYSAYNGIGYL 324 (525)
Q Consensus 290 ---------------------------------~~g~~~~~~~~~A~~~~~~a~~~----~--------~~~a~~~lg~~ 324 (525)
+. .|++.+|...|..|... . +....++|+.+
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFR----LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH----hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44 44444444444444322 0 01123444443
Q ss_pred HHhCCCCCccCHHHHHHHHHHHH----------------------------------hC--CChhHHHHHHHHHHcCCCC
Q 009801 325 YVKGYGVEKKNYTKAKEYFEKAA----------------------------------DN--EEAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 325 ~~~g~~~~~~~~~~A~~~~~~a~----------------------------------~~--~~~~a~~~lg~~y~~g~~~ 368 (525)
+.. ..+++.|.+.|+..+ +. .+|.++..+|.+|..
T Consensus 506 ~E~-----l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~---- 576 (1018)
T KOG2002|consen 506 LEE-----LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK---- 576 (1018)
T ss_pred HHh-----hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh----
Confidence 332 112333333333222 21 123333333333333
Q ss_pred cCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCC--------CcCCHHHHHHHHHHHHHcCChHHH--HHHHHHH
Q 009801 369 KRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVG--------LKKNLHMATALYKLVAERGPWSSL--SRWALES 434 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~----~~~~a~~~l~~~y~~g~g--------~~~~~~~A~~~~~~a~~~~~~~a~--~~l~~~~ 434 (525)
...+..|..-|+..... .++.+...||.++..... ..+.+++|++.|.+++..+|.+.+ ..+|.++
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVL 656 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhh
Confidence 23333333322222211 234555555555543222 234678899999999999976655 4788999
Q ss_pred HhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC----CCHHHHH
Q 009801 435 YLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ----GNEHAAL 508 (525)
Q Consensus 435 ~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~ 508 (525)
...|++.+|+..|.+..+. ..++++.|+|.||.. .++|..|++.|++.+.. ++++.+.
T Consensus 657 A~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e----------------~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE----------------QGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred hhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH----------------HHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 9999999999999999887 468899999999988 88999999999998864 4799999
Q ss_pred HHHHHHHc
Q 009801 509 LIGDAYYY 516 (525)
Q Consensus 509 ~lg~~y~~ 516 (525)
.||.+|+.
T Consensus 721 ~Lara~y~ 728 (1018)
T KOG2002|consen 721 YLARAWYE 728 (1018)
T ss_pred HHHHHHHH
Confidence 99999873
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-21 Score=200.77 Aligned_cols=306 Identities=8% Similarity=-0.073 Sum_probs=238.3
Q ss_pred hHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++++|+..++.. ..+.++++++.+|..... .+++++|+..|++++. +++..++..+|.++...|++++|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 67788888888773 467888888888887776 7888888888888765 467888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRG 258 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~ 258 (525)
..|+++++..+.+. .....++.++...|++++|+..+++... ++++.++..++. +...
T Consensus 131 ~~l~~Al~l~P~~~----------------~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~--- 190 (656)
T PRK15174 131 DLAEQAWLAFSGNS----------------QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNK--- 190 (656)
T ss_pred HHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHc---
Confidence 88888877654432 1245567778888888888888877643 467777766654 4444
Q ss_pred CccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCc
Q 009801 259 LRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 259 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~ 333 (525)
+++++|+..++++++.. .......++.++.. .+++++|+..|+++++.. ++.++..+|.++.. .
T Consensus 191 --g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-----~ 259 (656)
T PRK15174 191 --SRLPEDHDLARALLPFFALERQESAGLAVDTLCA----VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-----S 259 (656)
T ss_pred --CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----c
Confidence 38899999998887753 23344556777777 889999999999988764 78888889988876 4
Q ss_pred cCHHH----HHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 009801 334 KNYTK----AKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 334 ~~~~~----A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~ 405 (525)
|++++ |+.+|+++++. +++.++..+|.++.. .+++++|+.+++++++. +++.++.++|.++.. .
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~----~ 331 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ----V 331 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----C
Confidence 46664 78899988865 577788899999998 89999999999988876 677888888998887 8
Q ss_pred CCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 406 KNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~~--a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++++|+..|+++++.+|.. ....+|.++...|++++|+..|+++++.
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999988876543 4455688888899999999999988766
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=196.10 Aligned_cols=364 Identities=16% Similarity=0.110 Sum_probs=283.6
Q ss_pred ccccCCCCCCCccccCCCC--CC-CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcC
Q 009801 63 TEENLDPGSWSPVFEPSID--PG-AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMG 137 (525)
Q Consensus 63 ~~~~~~~~~a~~~~~~~~~--~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g 137 (525)
....+||..|..+|.+++. |. .++.....|.+.+. .++.+.|+.-++++. +|.+..++..||.+-..-
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k-------l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~ 246 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWK-------LGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh-------ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence 4455889999999999622 22 25555566666665 788999999999975 778899999999876542
Q ss_pred CCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhh
Q 009801 138 MMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (525)
Q Consensus 138 ~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (525)
. -...+.+++..+.+|-. ..|+.++..|+..+...++|..+.+++..++......... ......
T Consensus 247 ~-d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~-------------aes~Y~ 312 (1018)
T KOG2002|consen 247 N-DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK-------------AESFYQ 312 (1018)
T ss_pred c-chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH-------------HHHHHH
Confidence 2 25678899999999865 4699999999999999999999999999988765332211 123677
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHc--CC-HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQK--GN-AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~--~~-~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
++..+..+|++++|.++|.++... ++ .-.++.||++|...+ +++.|+.+|++.++. ++...+..||.+|.
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~-----dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG-----DLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc-----hHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 899999999999999999998665 33 678999999999995 999999999999875 78899999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-------CChhHHHHHHHH
Q 009801 291 RGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------EEAGGHYNLGVM 361 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~ 361 (525)
......-..++|..++.++.+.. +.+++..++.+|.. +|+..++.+|.+|++. -.++.++++|..
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~------~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ------TDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh------cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 72111225688999999998764 78889999999975 3777778888888743 356788899999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHc----CC--------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 362 YYKGIGVKRDVKLACKYFLVAANA----GH--------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 362 y~~g~~~~~~~~~A~~~~~~a~~~----~~--------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
++. .+++.+|...|.+|... .+ ....++++.+++. ..+++.|.+.|+.++...| .+++
T Consensus 462 hf~----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~----l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 462 HFR----LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE----LHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHH----hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHCchhHHHH
Confidence 998 89999999999888754 11 1247888888887 7888888888888887764 6777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
.++|......++..+|..++..++.. .++.++.-+|.++
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 78887777778888888888888654 3555666666444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-21 Score=201.73 Aligned_cols=339 Identities=10% Similarity=-0.090 Sum_probs=276.9
Q ss_pred ccccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCC
Q 009801 63 TEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGM 138 (525)
Q Consensus 63 ~~~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~ 138 (525)
....+++.+|..+++.. ..|.++++++.+|...+. .+++++|+..++++ .+|+++.++..+|.++..
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~-------~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~-- 122 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA-------SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK-- 122 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--
Confidence 34457788888888777 778889999999998886 88899999999995 578999999999999998
Q ss_pred CccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhh
Q 009801 139 MRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (525)
Q Consensus 139 g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (525)
.+++++|+..|++++. .++..++..++.++...|++++|+..+++++...+..... ....
T Consensus 123 --~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a----------------~~~~ 184 (656)
T PRK15174 123 --SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM----------------IATC 184 (656)
T ss_pred --cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH----------------HHHH
Confidence 8999999999999987 5789999999999999999999999999887664432111 1122
Q ss_pred hHhhhccCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 009801 217 GALRKSRGEDDEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR 291 (525)
Q Consensus 217 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 291 (525)
..+...|++++|+..+++.... ........++.++... +++++|+..|++++.. +++.++..+|.+|..
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-----g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~ 258 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-----GKYQEAIQTGESALARGLDGAALRRSLGLAYYQ 258 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 2467789999999999997665 2344455667788777 4999999999999875 678899999999999
Q ss_pred CCCCCCCHHH----HHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHH
Q 009801 292 GAGVERNYTK----ALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYY 363 (525)
Q Consensus 292 g~~~~~~~~~----A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~ 363 (525)
.+++++ |+..|+++++. +++.++..+|.++.. .+++++|+.+++++++. +++.++..+|.+|.
T Consensus 259 ----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-----~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 259 ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-----TGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred ----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888875 89999999876 478899999999987 67999999999999876 57888999999999
Q ss_pred cCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh-------HHHHHHHHHH
Q 009801 364 KGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-------SSLSRWALES 434 (525)
Q Consensus 364 ~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-------~a~~~l~~~~ 434 (525)
. .+++++|+..|+++++. .++.....+|.++.. .+++++|+..|+++++..|. ++...+...+
T Consensus 330 ~----~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~----~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~ 401 (656)
T PRK15174 330 Q----VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ----AGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQI 401 (656)
T ss_pred H----CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHH
Confidence 9 99999999999999976 344556667888887 89999999999999988642 3444555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009801 435 YLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 435 ~~~g~~~~A~~~~~~a~ 451 (525)
...+...+...|....+
T Consensus 402 ~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 402 SAVNLPPERLDWAWEVA 418 (656)
T ss_pred HhcCCccchhhHHHHHh
Confidence 55555555545554443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-19 Score=191.02 Aligned_cols=384 Identities=11% Similarity=0.033 Sum_probs=285.0
Q ss_pred CCCCCCCccccCCC--CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccC
Q 009801 67 LDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRER 142 (525)
Q Consensus 67 ~~~~~a~~~~~~~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~ 142 (525)
+++..|+..++++. ++.++.++..+|..+.. .+++++|+..++++ .+|+++.+...+|.++.. .+
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~----~g 97 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRN-------LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD----AG 97 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CC
Confidence 45566666677764 44445557888887776 78889999999995 467888888999988887 88
Q ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 143 NKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 143 d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
++++|+..+++++.. ++.. +..+|.++...+++++|+..|+++++..|.+.. ....++.++
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~----------------~~~~la~~l 160 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ----------------YPTEYVQAL 160 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHH
Confidence 999999999998763 5777 888999999999999999999999887665432 234466677
Q ss_pred hccCCcHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCccCH---HHHHHHHHHHHhc--CCH-------H
Q 009801 221 KSRGEDDEAFQILEYQAQKGNAG--------AMYKIGLFYYFGLRGLRRDR---TKALMWFSKAADK--GEP-------Q 280 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~~~~~--------a~~~Lg~~y~~~~~~~~~~~---~~A~~~~~~a~~~--~~~-------~ 280 (525)
...+..++|++.++++.. +|. ....+..++........+.+ ++|+..++++++. .++ .
T Consensus 161 ~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 777888888888876443 211 22223333322111111234 7788899888853 222 2
Q ss_pred HHHH-HHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC-----
Q 009801 281 SMEF-LGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE----- 351 (525)
Q Consensus 281 a~~~-Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~----- 351 (525)
+... ++.++ . .+++++|+..|+++++.+ ...+...+|.+|.. .+++++|+.+|+++++.+.
T Consensus 239 a~~d~l~~Ll-~----~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~-----~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 239 ARIDRLGALL-A----RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK-----LHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred HHHHHHHHHH-H----hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh-----cCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2222 55554 4 679999999999998875 23455667888876 5699999999999887642
Q ss_pred -hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 352 -AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-----------------QKAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 352 -~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
......|+.++.. .+++++|+.+++++.+... ..+...++.++.. .+++++|+.
T Consensus 309 ~~~~~~~L~~a~~~----~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~~ 380 (765)
T PRK10049 309 SDEELADLFYSLLE----SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAEM 380 (765)
T ss_pred ChHHHHHHHHHHHh----cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 2456778888888 9999999999999887531 3467788888887 899999999
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHH
Q 009801 414 LYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (525)
Q Consensus 414 ~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (525)
.+++++...| ...+..+|.++...|++++|+..++++++. ++..+.+.+|..+.. .++++
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~----------------~~~~~ 444 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD----------------LQEWR 444 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----------------hCCHH
Confidence 9999998864 678889999999999999999999999886 577788889988877 67899
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHH
Q 009801 490 CAHSLWWQASEQG-NEHAALLIGDAY 514 (525)
Q Consensus 490 ~A~~~~~~a~~~~-~~~a~~~lg~~y 514 (525)
+|...++++++.. +......|...+
T Consensus 445 ~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 445 QMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999998764 222333444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-19 Score=189.58 Aligned_cols=358 Identities=11% Similarity=-0.002 Sum_probs=282.9
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.++.++|+..+++.. ++..+.++..+|.++.. .++.++|+.+|++++. ++++.+...++.++...+++++|+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRN----LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788999999999965 56667789999999999 9999999999999876 468999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRG 258 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~ 258 (525)
..++++++..+.+. . ...++.++...|++++|+..++++.. |+++.++..++.++...
T Consensus 104 ~~l~~~l~~~P~~~----------------~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~--- 163 (765)
T PRK10049 104 VKAKQLVSGAPDKA----------------N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN--- 163 (765)
T ss_pred HHHHHHHHhCCCCH----------------H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---
Confidence 99999988755432 2 44578889999999999999999855 58999999999999877
Q ss_pred CccCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHc-CCCCCCCH---HHHHHHHHHHHHc--CCHH-------HHH
Q 009801 259 LRRDRTKALMWFSKAADKGE------PQSMEFLGEIYAR-GAGVERNY---TKALEWLTHAARQ--QLYS-------AYN 319 (525)
Q Consensus 259 ~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~-g~~~~~~~---~~A~~~~~~a~~~--~~~~-------a~~ 319 (525)
+..++|+..++++..... ......+..++.. +....+++ ++|+..++++++. .++. +..
T Consensus 164 --~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 164 --RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred --CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 488999999987765210 0122222233221 11112334 7899999998864 1221 222
Q ss_pred H-HHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------HH
Q 009801 320 G-IGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH------QK 389 (525)
Q Consensus 320 ~-lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~------~~ 389 (525)
. ++.++. .+++++|+..|+++++.+. ..+...+|.+|.. .+++++|+.+|+++++... ..
T Consensus 242 d~l~~Ll~------~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~----~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 242 DRLGALLA------RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK----LHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred HHHHHHHH------hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 2 555553 3589999999999998752 3456678999999 9999999999999887642 34
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----------------WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
....++.++.. .+++++|+.+++++.+..| ..++..++.++...|++++|+..+++++.
T Consensus 312 ~~~~L~~a~~~----~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 312 ELADLFYSLLE----SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHHHHHHHHHh----cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777776 8999999999999988753 24667899999999999999999999987
Q ss_pred c--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcccc
Q 009801 453 L--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYGRV 519 (525)
Q Consensus 453 ~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g 519 (525)
. +++.++.++|.++.. .+++++|+..++++++.. ++.+.+.+|.++. +.|
T Consensus 388 ~~P~n~~l~~~lA~l~~~----------------~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al-~~~ 441 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQA----------------RGWPRAAENELKKAEVLEPRNINLEVEQAWTAL-DLQ 441 (765)
T ss_pred hCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-HhC
Confidence 5 789999999999988 678999999999998864 7888888888776 443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-19 Score=169.38 Aligned_cols=204 Identities=33% Similarity=0.473 Sum_probs=130.7
Q ss_pred ccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHH
Q 009801 222 SRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTK 301 (525)
Q Consensus 222 ~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~ 301 (525)
..+++.++..+++++...+++.+.+.++.+|..+ .+++.|..+|+.||+++.+.+++.+++.||.+|..|.|+..|..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g-~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAG-KGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhc-cCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHH
Confidence 3455666666666666666666666666666666 366666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHhC---CCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 302 ALEWLTHAARQQLYSA---YNGIGYLYVKG---YGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 302 A~~~~~~a~~~~~~~a---~~~lg~~~~~g---~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
|..||++|++.+++++ +..+|.+|..| .++.. +..+|+.+|.++.+.+++.+++.||.+|..|.|+..|..+|
T Consensus 132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~-~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY-DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH-HHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 6666666666666666 66666666665 34433 44566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCcC----------CHHHHHHHHHHHHHcCChHHH
Q 009801 376 CKYFLVAANAGHQKAFYQLAKMFHTGVGLKK----------NLHMATALYKLVAERGPWSSL 427 (525)
Q Consensus 376 ~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~----------~~~~A~~~~~~a~~~~~~~a~ 427 (525)
+.||++|++.++..+++.++.++..|.++.+ +...|..|+.++...++..+.
T Consensus 211 ~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 211 FRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 6666666666666666666666666555443 556666666665555544433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=166.89 Aligned_cols=204 Identities=33% Similarity=0.522 Sum_probs=190.5
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHH
Q 009801 258 GLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYT 337 (525)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~ 337 (525)
....++..|+.+++++...+++.+...++.+|..|.++..|..+|..||+.+.+.+++.+++.||.+|..|.|+.. |..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~-d~~ 130 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPL-DLV 130 (292)
T ss_pred cccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCccc-CHH
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999766 999
Q ss_pred HHHHHHHHHHhCCChhH---HHHHHHHHHcC---CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 338 KAKEYFEKAADNEEAGG---HYNLGVMYYKG---IGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 338 ~A~~~~~~a~~~~~~~a---~~~lg~~y~~g---~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
+|..||++|++.+++.+ .+.+|.+|..| .++..+...|..+|.++...+++.+++.+|.+|..|.|+..|+++|
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 99999999999999999 99999999998 6777788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcChHHHHHHHH
Q 009801 412 TALYKLVAERGPWSSLSRWALESYLKG---------------DVGKAFLLYSRMAELGYEVAQSNAA 463 (525)
Q Consensus 412 ~~~~~~a~~~~~~~a~~~l~~~~~~~g---------------~~~~A~~~~~~a~~~~~~~a~~~la 463 (525)
..||++|++.++..+++.++ +++..| +...|..++.++...+...+...+-
T Consensus 211 ~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 211 FRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 99999999999988999999 677666 8899999999999998776666555
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-17 Score=177.20 Aligned_cols=353 Identities=10% Similarity=-0.037 Sum_probs=238.0
Q ss_pred HhHHHHHHHHHH-H-HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-CCC----HHHHHHHHHHHhcc-----
Q 009801 106 RVMEEATSEVES-A-AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGN----IQSKMAVAYTYLRQ----- 173 (525)
Q Consensus 106 ~~~~~A~~~~~~-a-~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~~----~~a~~~la~~y~~~----- 173 (525)
+.+.+|....+. - ..+++..++..++..... .|+.++|..+|+++.. .++ ......|+.+|...
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ----NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 344444444444 2 237778888888887777 7778888888888776 222 22233666666553
Q ss_pred --------------------ccHHH---HHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHH
Q 009801 174 --------------------DMHDK---AVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAF 230 (525)
Q Consensus 174 --------------------~~~~~---A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 230 (525)
++..+ +...+.+++...+.+ .......+++.++.. ++..+|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~--------------~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPS--------------YDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCC--------------CCHHHHHHHHHHHHh-CCcHHHH
Confidence 22333 334444433221110 011234566666665 6777788
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 231 QILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 231 ~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
..+.+++.. .+......+|.++... +++++|+..|++++.. .....++.+|.++.. .+++++|+.+|++
T Consensus 497 ~a~~~Al~~~Pd~~~~L~lA~al~~~-----Gr~eeAi~~~rka~~~~p~~~a~~~la~all~----~Gd~~eA~~~l~q 567 (987)
T PRK09782 497 YAWLQAEQRQPDAWQHRAVAYQAYQV-----EDYATALAAWQKISLHDMSNEDLLAAANTAQA----AGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHC-----CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 877776543 2222344455555555 4899999999887664 334567788888888 8889999999998
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 309 AARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 309 a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+++.. .......++..... .|++++|+.+|+++++.+ ++.++.++|.++.. .+++++|+.+|++++..
T Consensus 568 AL~l~P~~~~l~~~La~~l~~-----~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYI-----PGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 88764 33333444433332 368899999999988653 47788889999988 89999999999988876
Q ss_pred --CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHH
Q 009801 386 --GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQ 459 (525)
Q Consensus 386 --~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~ 459 (525)
+++.++.++|.++.. .+++++|+..|+++++..| +.+++++|.++...|++++|+.+|+++++. ++....
T Consensus 639 ~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 639 EPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred CCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 678888899988887 8889999999999988864 667888999999999999999999999876 455566
Q ss_pred HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Q 009801 460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYY 515 (525)
Q Consensus 460 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~ 515 (525)
...|.+... ..+++.|.+-++++...+ ..-+-...|.++.
T Consensus 715 ~~~g~~~~~----------------~~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~ 755 (987)
T PRK09782 715 PLTPEQNQQ----------------RFNFRRLHEEVGRRWTFSFDSSIGLRSGAMST 755 (987)
T ss_pred hhhhHHHHH----------------HHHHHHHHHHHHHHhhcCccchhccccchHhh
Confidence 666766665 667788888788776544 1114444555444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-17 Score=175.56 Aligned_cols=352 Identities=10% Similarity=0.059 Sum_probs=255.0
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHhccccHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLY 183 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~~~~a~~~la~~y~~~~~~~~A~~~y 183 (525)
.++++.+..+ ++++++++- ..+...+. ....+..+.+..+...--+ .++..++..++......|+.++|..+|
T Consensus 326 ~~~~~~~~~~--~~~~~~~~~--~~~r~~~~--~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 326 EGQYDAAQKL--LATLPANEM--LEERYAVS--VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred ccHHHHHHHH--hcCCCcchH--HHHHHhhc--cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4445544433 456777763 22222222 2223344444444443334 689999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhc-------------------------cCCc---HHHHHHHHH
Q 009801 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS-------------------------RGED---DEAFQILEY 235 (525)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~---~~A~~~~~~ 235 (525)
+++....... .....+ ...++.++.. .++. ..+...+..
T Consensus 400 ~~~~~~~~~~-------~~~~~l------~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 400 LQRYPFQGDA-------RLSQTL------MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHhcCCCccc-------ccCHHH------HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 9986521100 000000 0012222222 2222 223333333
Q ss_pred HHH--cC--CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 236 QAQ--KG--NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 236 ~~~--~~--~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
+.. ++ ++.+++.+|.++..+ ++.+|+..|.+++... +......+|.++.. .+++++|+..|++++
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~~------~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~----~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRDT------LPGVALYAWLQAEQRQPDAWQHRAVAYQAYQ----VEDYATALAAWQKIS 536 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHhC------CcHHHHHHHHHHHHhCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHh
Confidence 332 45 899999999999764 8888999999888653 23334556776677 899999999999987
Q ss_pred HcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-C
Q 009801 311 RQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-G 386 (525)
Q Consensus 311 ~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~ 386 (525)
... .......+|.++.. .|++++|+.+|+++++.+ +......++..... .+++++|+..|+++++. .
T Consensus 537 ~~~p~~~a~~~la~all~-----~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 537 LHDMSNEDLLAAANTAQA-----AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRSLNIAP 607 (987)
T ss_pred ccCCCcHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCC
Confidence 653 45667888988876 569999999999999874 33444455555556 69999999999999987 3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNA 462 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~l 462 (525)
++.++.++|.++.. .+++++|+.+|+++++.+| +.++.++|.++...|++++|+..|+++++. +++.+++++
T Consensus 608 ~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 608 SANAYVARATIYRQ----RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 58899999999998 9999999999999999975 678889999999999999999999999976 689999999
Q ss_pred HHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 463 AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
|.++.. .+++++|+.+|+++++.. +.+..+..|.+.
T Consensus 684 A~al~~----------------lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 684 AYVNQR----------------LDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHH----------------CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 999998 678999999999998765 566666666554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-17 Score=164.12 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=208.0
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCC---
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN--- 159 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~--- 159 (525)
....|.+|..++. .+++++|+..|+++. ++.++.+++.+|.+|.. .+++++|+..+++++....
T Consensus 35 ~~~~y~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 35 LSRDYFKGLNFLL-------NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred ccHHHHHHHHHHh-------cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCH
Confidence 3444556665554 566777777777754 44566667777777766 6677777777776665431
Q ss_pred ---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH
Q 009801 160 ---IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 160 ---~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
..++..+|.+|...|++++|+..|+++.+.
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~----------------------------------------------- 136 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE----------------------------------------------- 136 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----------------------------------------------
Confidence 234566666666666666666666665331
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHA 309 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a 309 (525)
.+.+..++..++.++... +++++|+..++++++.+. ...+..+|.++.. .+++++|+.+|+++
T Consensus 137 -~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 206 (389)
T PRK11788 137 -GDFAEGALQQLLEIYQQE-----KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAARALLKKA 206 (389)
T ss_pred -CcchHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 234566788888888777 489999999999887532 2245678888888 89999999999999
Q ss_pred HHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 310 ARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 310 ~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~ 384 (525)
++.. ...++..+|.++.. .+++++|+++++++.+.+. +.++..++.+|.. .++.++|+..++++.+
T Consensus 207 l~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 207 LAADPQCVRASILLGDLALA-----QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALE 277 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 8754 67788899999876 5699999999999987532 3567889999999 9999999999999887
Q ss_pred c-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHh---cCCHHHHHHHHHHHHHc
Q 009801 385 A-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS-RWALESYL---KGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 385 ~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-~l~~~~~~---~g~~~~A~~~~~~a~~~ 453 (525)
. .+......++.++.. .+++++|+.+++++++..|..... .+...... .|+..+|+..+++.++.
T Consensus 278 ~~p~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 278 EYPGADLLLALAQLLEE----QEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hCCCchHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 6 233455788888887 899999999999999987654433 23333332 45888999888877754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-16 Score=146.61 Aligned_cols=319 Identities=17% Similarity=0.137 Sum_probs=233.1
Q ss_pred CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcc--------------------------
Q 009801 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQ-------------------------- 173 (525)
Q Consensus 122 ~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~-------------------------- 173 (525)
.++.-+|..|.++.. .+..++|+..+..++. +=+..|+..|+.+....
T Consensus 162 ~D~fllYL~Gvv~k~----~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKE----LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHh----hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 346667888888888 7888888888888876 34666666666654432
Q ss_pred ---ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-----CCHHHH
Q 009801 174 ---DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-----GNAGAM 245 (525)
Q Consensus 174 ---~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~a~ 245 (525)
...++++.-+++....+.. .+.-.....+.+.....++++|+..|+..... ++.+.+
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~---------------~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly 302 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFP---------------NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCC---------------ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 2222232222222221111 11112334555666777788888887776544 233333
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHH-HHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHH
Q 009801 246 YKIGLFYYFGLRGLRRDRTKALMWFSK-AAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNG 320 (525)
Q Consensus 246 ~~Lg~~y~~~~~~~~~~~~~A~~~~~~-a~~--~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 320 (525)
.+.- |. . +....+.++-+ +.+ .--++.+.-+|..|.- .++.++|+.+|++|++.+ ...++..
T Consensus 303 SN~L--Yv-~------~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTL 369 (559)
T KOG1155|consen 303 SNVL--YV-K------NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTL 369 (559)
T ss_pred hHHH--HH-H------hhhHHHHHHHHHHHHhccCCccceeeehhHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHH
Confidence 3321 11 1 22223333332 222 2346677778888887 889999999999999876 7889999
Q ss_pred HHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 009801 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAK 396 (525)
Q Consensus 321 lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~ 396 (525)
+|.=|.. .++...|+..|++|++.+ |-.||+.||..|.. .+...-|+-+|++|... .++..+..||.
T Consensus 370 mGHEyvE-----mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 370 MGHEYVE-----MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI----MKMHFYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred hhHHHHH-----hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----hcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 9999975 669999999999999985 67799999999999 99999999999999976 78999999999
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C--hHHHHHHHHHH
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAEL-------G--YEVAQSNAAWI 465 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~--~~~a~~~la~~ 465 (525)
+|.. ..+.++|+.+|++|+..++. .++..||.++-+.++..+|..+|++.++. + ...+...||..
T Consensus 441 CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 441 CYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 9998 99999999999999999865 89999999999999999999999999873 1 23466678877
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
..+ .+++++|-.|-.+++.-
T Consensus 517 f~k----------------~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 517 FKK----------------MKDFDEASYYATLVLKG 536 (559)
T ss_pred HHh----------------hcchHHHHHHHHHHhcC
Confidence 776 77889998887776644
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-16 Score=158.68 Aligned_cols=290 Identities=16% Similarity=0.130 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
....+.+|..+...+++++|+..|+++++.++.+. .....++.++...|++++|+..++++...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 98 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----------------ELHLALGNLFRRRGEVDRAIRIHQNLLSR 98 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----------------HHHHHHHHHHHHcCcHHHHHHHHHHHhcC
Confidence 34556677888888899999999999887654332 23556788889999999999999987765
Q ss_pred CC------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GN------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
.. ..++..||.+|...+ ++++|+.+|+++++. .+..++..++.++.. .+++++|+..++++++
T Consensus 99 ~~~~~~~~~~~~~~La~~~~~~g-----~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 99 PDLTREQRLLALQELGQDYLKAG-----LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAIDVAERLEK 169 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHHHHHHHHHH
Confidence 32 357888999998874 999999999999875 456788899999998 9999999999999987
Q ss_pred cCC-------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 312 QQL-------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 312 ~~~-------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
.+. ...+..+|.++.. .+++++|+.+|+++++. ++..+++.+|.+|.. .+++++|+.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 240 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALA-----RGDLDAARALLKKALAADPQCVRASILLGDLALA----QGDYAAAIEALERV 240 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 642 1245567877766 57999999999999875 467788999999999 99999999999999
Q ss_pred HHcCC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHH-
Q 009801 383 ANAGH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEV- 457 (525)
Q Consensus 383 ~~~~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~- 457 (525)
.+.+. ..++..++.+|.. .+++++|+..++++++..| ......++.++...|++++|+..++++++.....
T Consensus 241 ~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 241 EEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 87632 3567788888887 8999999999999998764 3344788999999999999999999998874222
Q ss_pred HHH-HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 458 AQS-NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 458 a~~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.+. .++..+... + .++..+|+..+++.++.
T Consensus 317 ~~~~l~~~~~~~~----------~----~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 317 GFHRLLDYHLAEA----------E----EGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHhhhcc----------C----CccchhHHHHHHHHHHH
Confidence 222 233322110 0 23567788777776653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=148.77 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=62.6
Q ss_pred hHhHHHHHHHHHHHHhc----CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHhcc
Q 009801 105 VRVMEEATSEVESAAME----GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNIQSKMAVAYTYLRQ 173 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~~~a~~~la~~y~~~ 173 (525)
..-+.+|+.-|+-.++. +...-..++|.+|.. ..++.+|+++|+.|+++ -.+..+.++|..+.+.
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~k----kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFK----KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeee----hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 34467888888775532 223334678999988 88999999999999875 1456778888888888
Q ss_pred ccHHHHHHHHHHHHHHHHh
Q 009801 174 DMHDKAVKLYAELAEIAVN 192 (525)
Q Consensus 174 ~~~~~A~~~y~~~~~~~~~ 192 (525)
|.|+.|+..|..+++..|+
T Consensus 290 gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred ccchhhHhhHHHHHHhCcc
Confidence 9999999888877766543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-15 Score=142.30 Aligned_cols=356 Identities=18% Similarity=0.102 Sum_probs=266.9
Q ss_pred hHhHHHHHHHHHHHHhc--CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.++|++|+++|.+|++. ..+..+.+++-+|.. .+|+++-++.-.+|++. .+..|++.-+..+...|++++|+
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~----lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYES----LGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHH----HhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 67899999999998754 447778899999999 99999999999999886 48899999999999999999887
Q ss_pred HHHH------------------HHHHH----HHhhhhc-cCCCCCchhhhhc------------------c----cchhh
Q 009801 181 KLYA------------------ELAEI----AVNSFLI-SKDSPVIEPIRIH------------------N----GAEEN 215 (525)
Q Consensus 181 ~~y~------------------~~~~~----~~~~~~~-~~~~~~~~~~~~~------------------~----~~~~~ 215 (525)
.-.. +.+.. .-..-.. +....+..+.-+. . .....
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 6322 11111 0000001 0111111110000 0 00011
Q ss_pred hhHhh-hccCCcHHHHHHHHHHHHc------CC---------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--
Q 009801 216 KGALR-KSRGEDDEAFQILEYQAQK------GN---------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-- 277 (525)
Q Consensus 216 ~~~~~-~~~~~~~~A~~~~~~~~~~------~~---------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-- 277 (525)
+..++ .....|.+|...+.+.+.. .+ +.++...|..+.-. +|...|...|.++++++
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~-----g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK-----GDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc-----CCchhhhhhHHHHHhcCcc
Confidence 11111 1234677777777775332 12 55666667766544 59999999999999874
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--Chh
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAG 353 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~ 353 (525)
+...+..+|.+|.+ ..+.++-...|.+|.+.+ +++.++.-|.+++- .+++++|+.-|++++..+ ++.
T Consensus 359 ~~~lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-----L~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 359 FNSLYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-----LQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred cchHHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-----HHHHHHHHHHHHHHhhcChhhhH
Confidence 34458889999999 999999999999998875 89999999999986 459999999999999874 667
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh------H
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW------S 425 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~ 425 (525)
++..++.+.++ +..++++...|+.+.+. ..++.+...|.++.. ++++++|++.|.+|+++.+. .
T Consensus 430 ~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 430 AYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhcccccccccc
Confidence 78899999888 89999999999999987 778999999999997 99999999999999998753 2
Q ss_pred --HHHHHHHHHH-hcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 426 --SLSRWALESY-LKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 426 --a~~~l~~~~~-~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.+.+-|.+.. =.+++..|+..+.+|++.+ ...|...+|.+..+ +++.++|+.+|++++.
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ----------------~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ----------------RGKIDEAIELFEKSAQ 565 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH----------------HhhHHHHHHHHHHHHH
Confidence 2223232222 2379999999999999985 45688889998887 8899999999999986
Q ss_pred CC
Q 009801 501 QG 502 (525)
Q Consensus 501 ~~ 502 (525)
.-
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 43
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.1e-17 Score=157.49 Aligned_cols=274 Identities=17% Similarity=0.159 Sum_probs=210.0
Q ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 142 RNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
-+..+|+..|.+.-+ .|-...+..+|..|+...+|++|..+|+.+-+..+-
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------------------- 385 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------------------- 385 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Confidence 356778888877322 245577888888888888888888888876443221
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHcCCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA---DKGEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~---~~~~~~a~~~Lg~~y~~g~~~~ 296 (525)
..+.+--...+.++. .-+-++-++-+-+ +...|.+|..+|.+|.- +
T Consensus 386 ---------------------rv~~meiyST~LWHL------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL----Q 434 (638)
T KOG1126|consen 386 ---------------------RVKGMEIYSTTLWHL------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSL----Q 434 (638)
T ss_pred ---------------------cccchhHHHHHHHHH------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh----h
Confidence 112222222333333 2233444444432 23678999999999998 9
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCH
Q 009801 297 RNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDV 372 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~ 372 (525)
++.+.|+++|++|+..+ .+-++..+|.=+.. .+++++|..+|+.|+.. .+-.|||.||.+|.+ ++++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-----~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K----qek~ 505 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-----TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK----QEKL 505 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhh-----hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec----cchh
Confidence 99999999999998775 56777888876654 45899999999999876 477899999999999 9999
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHH
Q 009801 373 KLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 373 ~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~ 448 (525)
+.|.-.|++|++.+ +...+..+|.++.. .|+.++|+.+|++|+.+++ +-..+..|.+++..+++++|+..++
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999884 56677888999987 8999999999999998885 5567788999999999999999999
Q ss_pred HHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 449 RMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 449 ~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+..+. .+..+++.+|.+|.+ .++.+.|+..|-=|.+++
T Consensus 582 eLk~~vP~es~v~~llgki~k~----------------~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 582 ELKELVPQESSVFALLGKIYKR----------------LGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhCcchHHHHHHHHHHHHH----------------HccchHHHHhhHHHhcCC
Confidence 77654 788899999999988 556788999888888765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-15 Score=142.63 Aligned_cols=318 Identities=14% Similarity=0.081 Sum_probs=232.0
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh-----ccCCCCCchhhhhccc----c----hhhhhHhhhccCC
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL-----ISKDSPVIEPIRIHNG----A----EENKGALRKSRGE 225 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~ 225 (525)
+.--++..|.++...+...+|+..+..++...|-.+. .+...++.....+..+ . ..-+..++.....
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999988875332210 0000000000000000 0 1123334455556
Q ss_pred cHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHcCCCCCCCHH
Q 009801 226 DDEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP--QSMEFLGEIYARGAGVERNYT 300 (525)
Q Consensus 226 ~~~A~~~~~~~~~~---~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~Lg~~y~~g~~~~~~~~ 300 (525)
.+++++-++..... +.+-.....|.+.... .|+++|+..|+...+.+.- .-+.....++.- . +-.
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~-----rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv----~-~~~ 312 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQ-----RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV----K-NDK 312 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH----H-hhh
Confidence 77777777776665 4455556677777666 5999999999999887321 111112222221 2 233
Q ss_pred HHHHHHHHHH-Hc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 301 KALEWLTHAA-RQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 301 ~A~~~~~~a~-~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
..+.++-+-+ .. -.++.+.-+|+.|.. .++.++|+.+|++|++.+ ...+|..+|.-|.. +++...|
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSl-----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE----mKNt~AA 383 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSL-----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE----MKNTHAA 383 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHH-----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH----hcccHHH
Confidence 3444444432 22 378899999999986 559999999999999874 67899999999999 9999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 376 CKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 376 ~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
+..|++|++. .+-.+|+.||.+|.. .+-..=|+-+|++|.+..| ...+..||..|.+.++.++|+.+|++|+
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYei----m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEI----MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHH----hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999998 467899999999997 9999999999999999864 6677899999999999999999999999
Q ss_pred HcChH--HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC-------C--CHHHHHHHHHHHH
Q 009801 452 ELGYE--VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ-------G--NEHAALLIGDAYY 515 (525)
Q Consensus 452 ~~~~~--~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~--~~~a~~~lg~~y~ 515 (525)
..++. .+++.||.+|.+ .++.++|..+|++-++. + ...|...|+.-+.
T Consensus 460 ~~~dte~~~l~~LakLye~----------------l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 460 LLGDTEGSALVRLAKLYEE----------------LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred hccccchHHHHHHHHHHHH----------------HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 99765 899999999999 77899999999998862 1 2456666766554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9e-16 Score=150.27 Aligned_cols=280 Identities=17% Similarity=0.135 Sum_probs=223.0
Q ss_pred hHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN--IQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~--~~a~~~la~~y~~~~~~~~A~ 180 (525)
.-+..+|+..|++. -..+..+.+..+|..|++ ..++.+|.+.|+.+-+... .+.+-.+...++..++-- ++
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v-~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV-AL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH-HH
Confidence 55789999999993 245678999999999999 9999999999999865321 111111111222211111 11
Q ss_pred HHHHH-HHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009801 181 KLYAE-LAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL 259 (525)
Q Consensus 181 ~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~ 259 (525)
.++.+ ++ ..++..|+++-.+|.+|.-.
T Consensus 407 s~Laq~Li------------------------------------------------~~~~~sPesWca~GNcfSLQ---- 434 (638)
T KOG1126|consen 407 SYLAQDLI------------------------------------------------DTDPNSPESWCALGNCFSLQ---- 434 (638)
T ss_pred HHHHHHHH------------------------------------------------hhCCCCcHHHHHhcchhhhh----
Confidence 11111 00 13557899999999999766
Q ss_pred ccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccC
Q 009801 260 RRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKN 335 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~ 335 (525)
++.+.|+++|++|+.. +.+.++..+|.=+.. ...+++|..+|+.|+..+ +-.|++.||.+|.. +++
T Consensus 435 -kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~----~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-----qek 504 (638)
T KOG1126|consen 435 -KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA----TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-----QEK 504 (638)
T ss_pred -hHHHHHHHHHHHhhccCCccchhhhhcCChhhh----hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-----cch
Confidence 6999999999999986 467888888887776 789999999999999875 88999999999987 679
Q ss_pred HHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 336 YTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 336 ~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
++.|.-+|++|++.+ +......+|.++.+ .++.++|+.+|++|+.. .++...+..+.++.. .+++++|
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~----~~~~~ea 576 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS----LGRYVEA 576 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh----hcchHHH
Confidence 999999999999885 56677889999999 99999999999999976 688899999999987 9999999
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHH
Q 009801 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQ 459 (525)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~ 459 (525)
+.-+++..+.-| ...++.+|.+|.+.|+.+.|+..|-=|.+++...+.
T Consensus 577 l~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 577 LQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999988865 557789999999999999999999988888654444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-14 Score=137.56 Aligned_cols=206 Identities=17% Similarity=0.142 Sum_probs=175.1
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
..+..|+.+|..|.. .+++++|.++|.++...+ ...++...|..+.. .+..++|+..|.+|.+. |..
T Consensus 310 ~~a~sW~aVg~YYl~----i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-----e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-----EGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred CCCcchhhHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-----cchHHHHHHHHHHHHHhccCCc
Confidence 346788999999988 899999999999997765 78899999998875 56999999999999987 777
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC---
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----GP--- 423 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~~--- 423 (525)
.....+|.-|.. .++.+.|..+|..|..+ .++..+..+|.+... .+.+.+|+.||+.+++. .+
T Consensus 381 lP~LYlgmey~~----t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 381 LPSLYLGMEYMR----TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred chHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhcccccc
Confidence 788899999999 99999999999999887 789999999999887 89999999999999833 22
Q ss_pred -h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 424 -W-SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 424 -~-~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
+ ..+.+||.++.+.+.+++|+.+|++++.. .++.++..+|++|-. .++++.|+.+|.+|+
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----------------lgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL----------------LGNLDKAIDHFHKAL 516 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----------------hcChHHHHHHHHHHH
Confidence 2 23679999999999999999999999987 588999999999988 778999999999998
Q ss_pred hCC--CHHHHHHHHHHHH
Q 009801 500 EQG--NEHAALLIGDAYY 515 (525)
Q Consensus 500 ~~~--~~~a~~~lg~~y~ 515 (525)
-.. +.-+---|+.+-+
T Consensus 517 ~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 517 ALKPDNIFISELLKLAIE 534 (611)
T ss_pred hcCCccHHHHHHHHHHHH
Confidence 765 4333334554443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=141.31 Aligned_cols=343 Identities=17% Similarity=0.099 Sum_probs=204.8
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCC
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~ 200 (525)
..+++|+..|.- ..-..+|+.-|+-.++. +.-.-..++|.+|+++.++.+|+++|+-+++.-|.
T Consensus 202 svl~nlaqqy~~----ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps-------- 269 (840)
T KOG2003|consen 202 SVLFNLAQQYEA----NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS-------- 269 (840)
T ss_pred HHHHHHHHHhhh----hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc--------
Confidence 456789988887 67788999999988764 22234578999999999999999999998764221
Q ss_pred CCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---
Q 009801 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--- 276 (525)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--- 276 (525)
+-...++ .+.++.|....+.|.|+.|+..|....+. -+-.+-++|-.+++..+ |-++-.+.|.+.+..
T Consensus 270 -ink~~ri--kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~-----d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 270 -INKDMRI--KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIG-----DAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred -cchhhHH--HHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecC-----cHHHHHHHHHHHhcCCCC
Confidence 1111222 33567777888899999999999887665 35556666666665442 444444444444321
Q ss_pred -------------------------------------------------------CCH------------HHH-------
Q 009801 277 -------------------------------------------------------GEP------------QSM------- 282 (525)
Q Consensus 277 -------------------------------------------------------~~~------------~a~------- 282 (525)
+.+ ..+
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 000 000
Q ss_pred -HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCC----------------------------
Q 009801 283 -EFLGEIYARGAGVERNYTKALEWLTHAARQQL---YSAYNGIGYLYVKGYG---------------------------- 330 (525)
Q Consensus 283 -~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~---------------------------- 330 (525)
.+-+.-|.. .+|++.|++.++-.-..++ ..+..+|..+++...|
T Consensus 422 ei~ka~~~lk----~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkg 497 (840)
T KOG2003|consen 422 EINKAGELLK----NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKG 497 (840)
T ss_pred hhhHHHHHHh----ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCC
Confidence 111112333 5677777777765433321 2233444444432100
Q ss_pred ---CCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHcCCC
Q 009801 331 ---VEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA--ANAGHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 331 ---~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a--~~~~~~~a~~~l~~~y~~g~g 403 (525)
...|++++|...|+.|+..+ ..++++++|..+.. +++.++|+.+|-+. +-.++.+.++.++.+|+.
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~----~~~ldeald~f~klh~il~nn~evl~qianiye~--- 570 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA----LGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL--- 570 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH----hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 11246666666666666553 34566666666666 66666666666553 233666666666666665
Q ss_pred CcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCC
Q 009801 404 LKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGES 479 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~ 479 (525)
..+..+|++|+-++...- ++..+..||.+|-+.|+...|+.++-..-.. -+.....+||..|..
T Consensus 571 -led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid----------- 638 (840)
T KOG2003|consen 571 -LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----------- 638 (840)
T ss_pred -hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-----------
Confidence 666666666666666553 3555566666666666666666665544433 244445555555433
Q ss_pred CCCCChHhHHHHHHHHHHHHhCC-C-HHHHHHHHHHHH
Q 009801 480 GFCTDAERHQCAHSLWWQASEQG-N-EHAALLIGDAYY 515 (525)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~a~~~~-~-~~a~~~lg~~y~ 515 (525)
..-.++|+.||++|.-.. + ..=...++.|+.
T Consensus 639 -----tqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 639 -----TQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred -----hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 445788999999886544 3 222334455544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-13 Score=144.97 Aligned_cols=309 Identities=14% Similarity=0.076 Sum_probs=234.7
Q ss_pred cCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhh
Q 009801 141 ERNKGKAFLYHHFAAEGG---NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~---~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
.++.+.|...|++..+.| +...+..|-..|.+.|+.++|.++|+++.+.+.. .+...+..+.
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~---------------PdvvTynaLI 514 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE---------------ANVHTFGALI 514 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC---------------CCHHHHHHHH
Confidence 567777777777776654 5667777777777788888888877776543211 1122345566
Q ss_pred HhhhccCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 009801 218 ALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIY 289 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y 289 (525)
..+.+.|+.++|++.|+.....+ +...+..|...|.+. ++.++|.++|++.... .+...+..|-..|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-----G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-----GAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 67788889999999888876653 567788888888777 4889999998887652 3456777777788
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHH
Q 009801 290 ARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYY 363 (525)
Q Consensus 290 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 363 (525)
.+ .++.++|++.|++..+.+ +...+..+...|.. .|++++|+..|++..+.+ +..++..+...|.
T Consensus 590 ~k----~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 590 AN----AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HH----CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 87 889999999999888775 56677777777765 568999999999888764 4567778888888
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhc
Q 009801 364 KGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWALESYLK 437 (525)
Q Consensus 364 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~~ 437 (525)
. .++.++|...++...+.+ +...+..|..+|.. .++.++|++.|++..+.+ +...+..+...|...
T Consensus 661 k----~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 661 H----AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred h----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 8 899999999999888764 56778888888887 889999999999887654 355677888889999
Q ss_pred CCHHHHHHHHHHHHHcC---hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 438 GDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 438 g~~~~A~~~~~~a~~~~---~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
|++++|++.+++..+.| +...+..+-..+.+ .+++++|..++.+..+.|
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k----------------~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASER----------------KDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHcC
Confidence 99999999999887764 55556666566655 557889999999888876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-14 Score=135.70 Aligned_cols=356 Identities=13% Similarity=0.051 Sum_probs=254.6
Q ss_pred ccccCCCCCCCccccCCCCCCCCcccH--HHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCC
Q 009801 63 TEENLDPGSWSPVFEPSIDPGAINGSY--YITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGM 138 (525)
Q Consensus 63 ~~~~~~~~~a~~~~~~~~~~~~~~a~~--~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~ 138 (525)
....++|+.|+++|..+++..+.++.| .++-+|.. .+++++-++...++. +|....+++..+..+..
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~-------lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~-- 195 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYES-------LGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ-- 195 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHH-------HhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh--
Confidence 344467899999999996555444444 45555555 788888888888865 56778888888888877
Q ss_pred CccCCHHHHHHHHHHHH------------------------------cCC---CHHHHHHHHH-----------------
Q 009801 139 MRERNKGKAFLYHHFAA------------------------------EGG---NIQSKMAVAY----------------- 168 (525)
Q Consensus 139 g~~~d~~~A~~~~~~a~------------------------------~~~---~~~a~~~la~----------------- 168 (525)
.++..+|+.-..-.. ..+ ..++-..++.
T Consensus 196 --lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 196 --LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred --hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 677777654332111 000 0000000110
Q ss_pred -------------HHhc-cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHH
Q 009801 169 -------------TYLR-QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234 (525)
Q Consensus 169 -------------~y~~-~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 234 (525)
++.. ...|.+|...+.+.......+... ..+-.....-.......|..+.-.|+...|.+.+.
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~---n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSV---NEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccc---cccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 1110 124455555444433222111111 00111111112234456667788899999999999
Q ss_pred HHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 235 YQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 235 ~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
+++.. .++.-+..+|.+|... .+.++-.+.|.+|.+. .++.+++..|++++- .+++++|+.-|++++
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~d~-----~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl----L~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYADE-----NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL----LQQYEEAIADFQKAI 421 (606)
T ss_pred HHHhcCcccchHHHHHHHHHhhh-----hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH----HHHHHHHHHHHHHHh
Confidence 98765 4556689999999877 4899999999999876 689999999999998 999999999999999
Q ss_pred HcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 311 RQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 311 ~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
... ++-++..++...++ +..++++...|+.+... ..++.+...|.++.. ++++++|++.|.+++++.
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr-----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYR-----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELE 492 (606)
T ss_pred hcChhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhc
Confidence 875 66777888887766 45899999999999987 789999999999999 999999999999999874
Q ss_pred CH--------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 387 HQ--------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 387 ~~--------~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.. --+.+-|.+... ..+|+..|+..+.+|++.+| ..|+..||.+..++|+.++|+++|++++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 32 333333444433 46899999999999999997 678899999999999999999999999865
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-13 Score=146.43 Aligned_cols=389 Identities=11% Similarity=-0.043 Sum_probs=214.5
Q ss_pred cccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHH--HHhhhcCCC
Q 009801 64 EENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVL--GFLYGMGMM 139 (525)
Q Consensus 64 ~~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l--g~~y~~g~g 139 (525)
...+++..|+..|+++ .+|.++.+.+.+..++.. .++.++|+.+++++.++.+..+...+ |.+|..
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-------~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~--- 114 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-------AGRDQEVIDVYERYQSSMNISSRGLASAARAYRN--- 114 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH-------cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH---
Confidence 3345666666666666 333332233344443333 45566666666666555444444444 446665
Q ss_pred ccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhh
Q 009801 140 RERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (525)
Q Consensus 140 ~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
.+++++|++.|+++++. +++.++..|+.+|...++.++|++.+++++...+... ....+.
T Consensus 115 -~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-----------------~~l~la 176 (822)
T PRK14574 115 -EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-----------------NYMTLS 176 (822)
T ss_pred -cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-----------------HHHHHH
Confidence 56666666666666543 4566666666666666666666666666654432210 011123
Q ss_pred HhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHH--HHH---HHHHHHH
Q 009801 218 ALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQ--SME---FLGEIYA 290 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~--a~~---~Lg~~y~ 290 (525)
.++...++..+|++.++++++ |++++++..+-.+....+ -...|.+..++--+.-.+. .+. ..+..-.
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~-----~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR-----IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHh
Confidence 333334555456666666543 355666666665555552 4445554444321110000 000 0011100
Q ss_pred cC----CCCCCC---HHHHHHHHHHHHHc--CCHHH--H------HHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---
Q 009801 291 RG----AGVERN---YTKALEWLTHAARQ--QLYSA--Y------NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--- 350 (525)
Q Consensus 291 ~g----~~~~~~---~~~A~~~~~~a~~~--~~~~a--~------~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--- 350 (525)
.+ .....+ .+.|+.-+++.+.. ..++. . -.|+.+.. .+++.++++.|+..-..+
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~------r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV------RHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhhhcCCCC
Confidence 00 000011 22233333333321 11211 1 11222221 347888888888776554
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
.+.+...+|+.|.. .+++++|...|+.++... .......|-..|.. .+++++|..+.++..+..
T Consensus 326 P~y~~~a~adayl~----~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld----~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 326 PDYARRWAASAYID----RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE----SEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred CHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh----cccHHHHHHHHHHHHhcC
Confidence 34566778888888 888888888888876532 12223455566665 788888888888887632
Q ss_pred C-----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCC
Q 009801 423 P-----------------WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCT 483 (525)
Q Consensus 423 ~-----------------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~ 483 (525)
| .++...++..+...|++.+|.+.+++.+.. +++.....+|.++..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~--------------- 462 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLA--------------- 462 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---------------
Confidence 2 235566777788888888888888888765 678888888888876
Q ss_pred ChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 484 DAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 484 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+.+.+|..+++.+...+ +..+.+.+|.++.
T Consensus 463 -Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 463 -RDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred -cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 667788888887655443 5566666666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-14 Score=151.68 Aligned_cols=345 Identities=13% Similarity=0.025 Sum_probs=235.9
Q ss_pred ccCCCCCCCccccCCCCCCCCcccHHH--HHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCc
Q 009801 65 ENLDPGSWSPVFEPSIDPGAINGSYYI--TISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMR 140 (525)
Q Consensus 65 ~~~~~~~a~~~~~~~~~~~~~~a~~~l--~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~ 140 (525)
..++..+|+.+++++.++.+....-.+ |..+.. .+++++|+..|+++. +|+++.++..|+.+|..
T Consensus 80 ~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-------~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~---- 148 (822)
T PRK14574 80 WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-------EKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD---- 148 (822)
T ss_pred HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----
Confidence 347788999999999988777777777 556665 788999999999964 78899999999999998
Q ss_pred cCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 141 ERNKGKAFLYHHFAAEGG-NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~-~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
.++.++|++.++++.... .......++.++...++..+|++.|+++++..|.+... ......+
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~----------------~~~~~~~ 212 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEV----------------LKNHLEI 212 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH----------------HHHHHHH
Confidence 899999999999998753 22223555666666778877999999999987654322 3345555
Q ss_pred hhccCCcHHHHHHHHHHHH------------------------cC--CH----H---HHHHHHHHHHhcC----------
Q 009801 220 RKSRGEDDEAFQILEYQAQ------------------------KG--NA----G---AMYKIGLFYYFGL---------- 256 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~------------------------~~--~~----~---a~~~Lg~~y~~~~---------- 256 (525)
....|-...|++..++.-+ +. .. . ++-.+-.++-...
T Consensus 213 l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~ 292 (822)
T PRK14574 213 LQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQ 292 (822)
T ss_pred HHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHH
Confidence 6667777777766654100 00 00 0 0000000110000
Q ss_pred ---------CCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--------CHH
Q 009801 257 ---------RGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--------LYS 316 (525)
Q Consensus 257 ---------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~ 316 (525)
-...+++.+++..|+..-..+ .+.+....|..|.. .+.+++|+..|++++... ...
T Consensus 293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~----~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 293 RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID----RRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 001235666677776665444 34577778888887 888888888888876643 112
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----------------CChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----------------EEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-----------------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
....|-..|.. .+++++|..++++..+. +..++...++.++.- .++..+|.+.+
T Consensus 369 ~~~~L~yA~ld-----~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~----~gdl~~Ae~~l 439 (822)
T PRK14574 369 DADDLYYSLNE-----SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA----LNDLPTAQKKL 439 (822)
T ss_pred HHHHHHHHHHh-----cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 23444444443 56888888888887652 112355667777777 78888888888
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 380 LVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 380 ~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.+.. ++...+..+|.++.. .+.+.+|..+++.+...+| ..+....+.++..++++++|....+..++.
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~----Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLA----RDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 887765 788888888888887 8888888888877776654 456667788888888888888888777665
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-12 Score=139.05 Aligned_cols=340 Identities=12% Similarity=0.035 Sum_probs=275.3
Q ss_pred hHhHHHHHHHHHHHHhcCCh--H--HHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDP--H--ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~--~--a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++++|+..|+...+.+.. . .+..+-..+.. .+....|..+++.... -+...+..+-..+...+++++|.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~----~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK----QRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----CCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHH
Confidence 57799999999997666531 1 12223334444 6789999999987766 56778888889999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLR 257 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~a~~~Lg~~y~~~~~ 257 (525)
..++++.+.+.. ........+...+...|+.++|.+++++..+.+ +...+..|...|.+.+
T Consensus 458 ~lf~~M~~~Gl~---------------pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G- 521 (1060)
T PLN03218 458 RVLRLVQEAGLK---------------ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG- 521 (1060)
T ss_pred HHHHHHHHcCCC---------------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-
Confidence 999998764321 111234566777889999999999999988753 6788889999998884
Q ss_pred CCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCC
Q 009801 258 GLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-----QLYSAYNGIGYLYVKGY 329 (525)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~ 329 (525)
++++|+..|++..+.+ +...+..|-..|.. .++.++|.+.|++.... .+...+..|-..|..
T Consensus 522 ----~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k-- 591 (1060)
T PLN03218 522 ----QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN-- 591 (1060)
T ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH--
Confidence 9999999999988764 56788888888888 89999999999998752 356677777777766
Q ss_pred CCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCC
Q 009801 330 GVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 330 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g 403 (525)
.|++++|.+.|++..+.+ ++..+..+...|.+ .++.++|...|++..+.| +...+..+-..|..
T Consensus 592 ---~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k--- 661 (1060)
T PLN03218 592 ---AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH--- 661 (1060)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Confidence 569999999999999875 56788899999999 999999999999988774 55677777777876
Q ss_pred CcCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---hHHHHHHHHHHHhhhCCCccccC
Q 009801 404 LKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMG 477 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~a~~~la~~~~~~~~~~~~~~ 477 (525)
.+++++|.+.++...+.+ +...+..+...|.+.|+.++|+..|++..+.+ +...++.+-..|.+
T Consensus 662 -~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k--------- 731 (1060)
T PLN03218 662 -AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE--------- 731 (1060)
T ss_pred -CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---------
Confidence 899999999999999886 35677889999999999999999999987653 66677778877777
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 478 ESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 478 ~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+++++|++.|++..+.|
T Consensus 732 -------~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 732 -------GNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred -------CCCHHHHHHHHHHHHHcC
Confidence 668899999999877665
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=145.85 Aligned_cols=224 Identities=18% Similarity=0.095 Sum_probs=104.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-C
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-L 314 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~ 314 (525)
.++++..+..+|.+.... ++++.|+..|++.+.. .++..+..++.+ .. .+++++|+.+++++.+.. +
T Consensus 40 ~~~~~~~~~~~a~La~~~-----~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~----~~~~~~A~~~~~~~~~~~~~ 109 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSL-----GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ----DGDPEEALKLAEKAYERDGD 109 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-----cccccccccccccccccccccccccccccc-cc----cccccccccccccccccccc
Confidence 356777888888888766 4999999999998876 345666777777 34 789999999998887654 4
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
+..+..+..++.. .++++++...++++... .++..+..+|.++.. .++.++|+..|+++++. +++
T Consensus 110 ~~~l~~~l~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 110 PRYLLSALQLYYR-----LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp --------H-HHH-----TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH-TT-H
T ss_pred cchhhHHHHHHHH-----HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCH
Confidence 5555555566655 45899999998887643 466788899999999 99999999999999987 578
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.+...++.++.. .++.+++.+.++...... ++..+..+|.++...|++++|+.+|+++.+. +++..+.++|.
T Consensus 181 ~~~~~l~~~li~----~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 181 DARNALAWLLID----MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp HHHHHHHHHHCT----TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 888889988876 788888777777766553 4556778899999999999999999999885 68889999999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
++.. .++.++|..+++++.+
T Consensus 257 ~l~~----------------~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 257 ALEQ----------------AGRKDEALRLRRQALR 276 (280)
T ss_dssp HHT---------------------------------
T ss_pred cccc----------------cccccccccccccccc
Confidence 9988 6788999999888765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-16 Score=146.20 Aligned_cols=248 Identities=18% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHHhhhcCCCccCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCc
Q 009801 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAE----GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVI 203 (525)
Q Consensus 128 ~~lg~~y~~g~g~~~d~~~A~~~~~~a~~----~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~ 203 (525)
+.+|.++.. .+++++|++.+++.+. .+++..+..+|.+....+++++|+..|++++..++.+..
T Consensus 12 l~~A~~~~~----~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~-------- 79 (280)
T PF13429_consen 12 LRLARLLYQ----RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ-------- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------
Confidence 355666665 6677777777754432 245566666777777777777777777776554322110
Q ss_pred hhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC
Q 009801 204 EPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE 278 (525)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~ 278 (525)
....+..+ ...+++++|++.+++..+. +++..+..+..++... ++++++...++++... .+
T Consensus 80 --------~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 80 --------DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL-----GDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp -----------------------------------------------H-HHHT-----T-HHHHHHHHHHHHH-T---T-
T ss_pred --------cccccccc-cccccccccccccccccccccccchhhHHHHHHHHH-----hHHHHHHHHHHHHHhccCCCCC
Confidence 01111111 2233333333333332221 2333333344444333 2455555554443321 23
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a 354 (525)
+..+..+|.++.. .|+.++|+..|+++++.. ++.+...++.++.. .++++++...++..... .++..
T Consensus 146 ~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-----~~~~~~~~~~l~~~~~~~~~~~~~ 216 (280)
T PF13429_consen 146 ARFWLALAEIYEQ----LGDPDKALRDYRKALELDPDDPDARNALAWLLID-----MGDYDEAREALKRLLKAAPDDPDL 216 (280)
T ss_dssp HHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHH-HTSCCH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHHHCcCHHHH
Confidence 3444445555554 455555555555554432 34444444444432 23444433333333222 23444
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a 418 (525)
+..+|.+|.. .+++++|+.+|+++... +++..+..+|.++.. .|+.++|...++++
T Consensus 217 ~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 217 WDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQA 274 (280)
T ss_dssp CHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred HHHHHHHhcc----cccccccccccccccccccccccccccccccccc----cccccccccccccc
Confidence 4444444444 44444444444444442 344444444444444 44444444444444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-13 Score=145.78 Aligned_cols=398 Identities=11% Similarity=-0.031 Sum_probs=292.2
Q ss_pred cCCCCCCCccccCCCCCC----CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhc---CChHHHHHHHHhhhcCC
Q 009801 66 NLDPGSWSPVFEPSIDPG----AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME---GDPHARSVLGFLYGMGM 138 (525)
Q Consensus 66 ~~~~~~a~~~~~~~~~~~----~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~g~ 138 (525)
.+++..|..+|+.....+ +..++..+...+.. .++.+.|...+...... .+...+..|..+|..
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~-------~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k-- 170 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIA-------LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK-- 170 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc--
Confidence 345667777776663322 22333333333332 56788888888876543 356777788888888
Q ss_pred CccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCC---------CCCc------
Q 009801 139 MRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD---------SPVI------ 203 (525)
Q Consensus 139 g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~---------~~~~------ 203 (525)
.++.++|.+.|++..+. +..++..+...|.+.|++++|+..|++..+.+......... ....
T Consensus 171 --~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 171 --CGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred --CCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 89999999999988654 56788899999999999999999999987653221000000 0000
Q ss_pred ---h--hhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-
Q 009801 204 ---E--PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG- 277 (525)
Q Consensus 204 ---~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~- 277 (525)
. .........+.+...|.+.|+.++|.+.|+... ..+..++..+...|.+.+ +.++|+..|++..+.+
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g-----~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHG-----YSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCC
Confidence 0 001122334566778899999999999998764 357788999999998884 9999999999987754
Q ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCCh
Q 009801 278 --EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA 352 (525)
Q Consensus 278 --~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~ 352 (525)
+...+..+...+.. .++.++|.+.+....+.+ +...+..|..+|.. .|+.++|.+.|++..+ .+.
T Consensus 322 ~pd~~t~~~ll~a~~~----~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~~m~~-~d~ 391 (697)
T PLN03081 322 SIDQFTFSIMIRIFSR----LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK-----WGRMEDARNVFDRMPR-KNL 391 (697)
T ss_pred CCCHHHHHHHHHHHHh----ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH-----CCCHHHHHHHHHhCCC-CCe
Confidence 56677888888888 899999999999998876 56677888888876 5699999999998765 467
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-C--C-hH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-G--P-WS 425 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-~--~-~~ 425 (525)
.+|..+...|.. .++.++|+..|++..+.| +...+..+-..+.. .++.++|.++|+...+. + | ..
T Consensus 392 ~t~n~lI~~y~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 392 ISWNALIAGYGN----HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY----SGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred eeHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 789999999999 999999999999988764 44555555555665 88999999999999864 3 2 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--C
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N 503 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~ 503 (525)
.+..+...+.+.|+.++|.+.+++.--..+...+..+...+.. .++.+.|...+++..+.+ +
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~----------------~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI----------------HKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------------cCCcHHHHHHHHHHhCCCCCC
Confidence 6778888999999999999998876444456667777666666 556778888888776654 3
Q ss_pred HHHHHHHHHHHH
Q 009801 504 EHAALLIGDAYY 515 (525)
Q Consensus 504 ~~a~~~lg~~y~ 515 (525)
...+..|.++|-
T Consensus 528 ~~~y~~L~~~y~ 539 (697)
T PLN03081 528 LNNYVVLLNLYN 539 (697)
T ss_pred CcchHHHHHHHH
Confidence 456666666664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-13 Score=146.28 Aligned_cols=335 Identities=12% Similarity=0.016 Sum_probs=256.1
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--------------------------
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-------------------------- 158 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-------------------------- 158 (525)
.+++++|.+.|++..++ +..++..+-..|.. .++.++|+..|++..+.|
T Consensus 171 ~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 171 CGMLIDARRLFDEMPER-NLASWGTIIGGLVD----AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred CCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 45566666666654332 44455555555555 566666666666654322
Q ss_pred ------------CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCc
Q 009801 159 ------------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226 (525)
Q Consensus 159 ------------~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (525)
+...+..|...|.+.|++++|.+.|++..+. +...++.+...+...|+.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-------------------~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-------------------TTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-------------------ChhHHHHHHHHHHhCCCH
Confidence 3445567778888899999999988765221 223466778889999999
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHH
Q 009801 227 DEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYT 300 (525)
Q Consensus 227 ~~A~~~~~~~~~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~ 300 (525)
++|+++|++....+ +...+..+...+.+. +++++|.+.+....+.+ +..++..|..+|.+ .|+.+
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~G~~~ 377 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-----ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----WGRME 377 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----CCCHH
Confidence 99999999987654 667888888888777 49999999999999875 45678889999999 99999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 301 KALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACK 377 (525)
Q Consensus 301 ~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~ 377 (525)
+|...|++..+ .+..+++.|...|.. .|+.++|++.|++..+.+ +..++..+-..+.. .++.++|..
T Consensus 378 ~A~~vf~~m~~-~d~~t~n~lI~~y~~-----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~~~~a~~ 447 (697)
T PLN03081 378 DARNVFDRMPR-KNLISWNALIAGYGN-----HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY----SGLSEQGWE 447 (697)
T ss_pred HHHHHHHhCCC-CCeeeHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CCcHHHHHH
Confidence 99999998654 466778888888876 569999999999988775 55567777778888 899999999
Q ss_pred HHHHHHHc-C---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 378 YFLVAANA-G---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 378 ~~~~a~~~-~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|+...+. + +...+..+..+|.. .|++++|.+.+++.-...+...+..+...+...|+.+.|...+++..+.
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGR----EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99998764 2 34567777778876 8999999999987543335667778888899999999999999998876
Q ss_pred C--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 454 G--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 454 ~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+ +...+..+..+|.. .+++++|.+.+++..+.|
T Consensus 524 ~p~~~~~y~~L~~~y~~----------------~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNS----------------SGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCCCCcchHHHHHHHHh----------------CCCHHHHHHHHHHHHHcC
Confidence 4 45577788888877 668999999998766554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-13 Score=135.41 Aligned_cols=305 Identities=15% Similarity=0.138 Sum_probs=238.4
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.|++++|.+.+...+ +|.++.+++.||.+|.+ .||.+++...+-.|++. ++.+-+..++.+..++++++.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 789999999999976 56789999999999999 99999999999999875 58899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCH-------HHHHHHHHHHH
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA-------GAMYKIGLFYY 253 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~a~~~Lg~~y~ 253 (525)
-+|.++++..|.++.. ......++.+.|+...|..-+++......+ +.....+..+.
T Consensus 228 ~cy~rAI~~~p~n~~~----------------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWEL----------------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcCCcchHH----------------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999987766432 456788899999999999999998776431 12222344444
Q ss_pred hcCCCCccCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----------------
Q 009801 254 FGLRGLRRDRTKALMWFSKAADKG----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----------------- 312 (525)
Q Consensus 254 ~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------------- 312 (525)
.. ++-+.|++.++.++... .-.-+..++.++.. ...+++|......-...
T Consensus 292 ~~-----~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~----~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 292 TH-----NERERAAKALEGALSKEKDEASLEDLNILAELFLK----NKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred Hh-----hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH----hHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 44 36699999999998742 22345567777777 67788887776665540
Q ss_pred --------C-----CHHH-HHHHHHHHHhCCCCCccCHHHHHHHHHHHHh---CCChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 313 --------Q-----LYSA-YNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD---NEEAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 313 --------~-----~~~a-~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
+ +..+ ...++.+... ..+..+++..+..--. ..+++.++.++..|.+ .+.+.+|
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~-----~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~----~~~~~~A 433 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLK-----ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN----IGKYKEA 433 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhccc-----ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh----cccHHHH
Confidence 1 1122 3344444433 2355555554433222 2467889999999999 9999999
Q ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 376 CKYFLVAANA---GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 376 ~~~~~~a~~~---~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
+.+|...... ++.-.++.+|.+|.. .+.++.|+++|++++...| .++-..|+.++..+|+.++|.+.+++.
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~----l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYME----LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 9999998866 566789999999998 9999999999999999864 789999999999999999999999874
Q ss_pred H
Q 009801 451 A 451 (525)
Q Consensus 451 ~ 451 (525)
.
T Consensus 510 ~ 510 (895)
T KOG2076|consen 510 I 510 (895)
T ss_pred c
Confidence 3
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=143.30 Aligned_cols=256 Identities=13% Similarity=-0.021 Sum_probs=185.3
Q ss_pred HHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHhhhh
Q 009801 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLR---------QDMHDKAVKLYAELAEIAVNSFL 195 (525)
Q Consensus 127 ~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~---------~~~~~~A~~~y~~~~~~~~~~~~ 195 (525)
.+..|..+... ....+.++|+.+|++|++. ++..++..+|.+|.. .+++++|+..++++++
T Consensus 261 ~~lrg~~~~~~-~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~------- 332 (553)
T PRK12370 261 VYLRGKHELNQ-YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE------- 332 (553)
T ss_pred HHHHhHHHHHc-cCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-------
Confidence 45555533321 1256778888888888764 577888888877653 3458889998888865
Q ss_pred ccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh
Q 009801 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (525)
.+|+++.++..+|.++... +++++|+.+|+++++
T Consensus 333 -----------------------------------------ldP~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 333 -----------------------------------------LDHNNPQALGLLGLINTIH-----SEYIVGSLLFKQANL 366 (553)
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHH
Confidence 4567788888889888776 489999999999877
Q ss_pred c--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--
Q 009801 276 K--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-- 349 (525)
Q Consensus 276 ~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-- 349 (525)
. +++.+++.+|.++.. .|++++|+.+++++++.+ ++.+...++.++.. .+++++|+.+++++++.
T Consensus 367 l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-----~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 367 LSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTRAAAGITKLWITYY-----HTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-----ccCHHHHHHHHHHHHHhcc
Confidence 5 567888899999888 889999999999998875 44455555544443 35889999999988754
Q ss_pred -CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--h
Q 009801 350 -EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--W 424 (525)
Q Consensus 350 -~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~ 424 (525)
+++.++..+|.+|.. .+++++|...+++.... .+..+...++..|.. .+ ++|...+++..+... +
T Consensus 438 p~~~~~~~~la~~l~~----~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 438 QDNPILLSMQVMFLSL----KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ----NS--ERALPTIREFLESEQRID 507 (553)
T ss_pred ccCHHHHHHHHHHHHh----CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc----cH--HHHHHHHHHHHHHhhHhh
Confidence 467778889999988 89999999999886554 345566677777664 33 466666666544321 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcChH
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAELGYE 456 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 456 (525)
........++...|+-+.+..| +++.+.++.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 1122377778888999999988 777777653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-14 Score=144.04 Aligned_cols=217 Identities=13% Similarity=0.052 Sum_probs=168.9
Q ss_pred cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009801 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFY 252 (525)
Q Consensus 173 ~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y 252 (525)
.+++++|+..|+++++.+|..... +. .-..++..++..-
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a----------------~~-------------------------~La~~~~~~~~~g 312 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAP----------------YC-------------------------ALAECYLSMAQMG 312 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHH----------------HH-------------------------HHHHHHHHHHHcC
Confidence 356789999999999998875311 00 0122233333321
Q ss_pred HhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC
Q 009801 253 YFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKG 328 (525)
Q Consensus 253 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g 328 (525)
. ....+++.+|+..++++++. +++.++..+|.++.. .+++++|+..|+++++.+ ++.+++.+|.++..
T Consensus 313 ~---~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~- 384 (553)
T PRK12370 313 I---FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI----HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM- 384 (553)
T ss_pred C---cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 1 12235799999999999976 688999999999998 999999999999998875 78899999999987
Q ss_pred CCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCC
Q 009801 329 YGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---GHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 329 ~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~l~~~y~~g~g 403 (525)
.|++++|+.+++++++.+ ++.+.+.++.++.. .+++++|+.+++++++. +++.++.++|.++..
T Consensus 385 ----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~--- 453 (553)
T PRK12370 385 ----AGQLEEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL--- 453 (553)
T ss_pred ----CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh---
Confidence 579999999999999874 44566667777777 78999999999998864 467889999999987
Q ss_pred CcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 404 LKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.|++++|...+++.....+ ..+...++..+...|+ +|...+++..+
T Consensus 454 -~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 454 -KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred -CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 9999999999999876654 4566677777888884 77777776554
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=117.67 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=160.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHcCCH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGA-GVERNYTKALEWLTHAARQQLY 315 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~-~~~~~~~~A~~~~~~a~~~~~~ 315 (525)
+...|+++..||... +++.+|+++|.+.|++-.+. +++.+++.+|..+..|. |..++...|+++|+.+++.+.+
T Consensus 30 ~EK~Pe~C~lLgdYl----Egi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~ 105 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYL----EGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIP 105 (248)
T ss_pred ccCCchHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCH
Confidence 346799999999988 47789999999999998765 78999999999999985 4788999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcc--CHHHHHHHHHHHHhCCChhHHHHHHHHHHcCC----------C----------CcCCHH
Q 009801 316 SAYNGIGYLYVKGYGVEKK--NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGI----------G----------VKRDVK 373 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~--~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~----------~----------~~~~~~ 373 (525)
.++.++|.+...|.-.... |..+|+.++.++++.++..+++.|.-+|..|. + +.+|.+
T Consensus 106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd 185 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD 185 (248)
T ss_pred HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence 9999999999877532222 58899999999999999999999999999871 1 237899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 374 LACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 374 ~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+|.++-.+|.+++++.+..++..+|..|.|+.+|.++|..+-.+|.++
T Consensus 186 ka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 186 KALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=130.30 Aligned_cols=233 Identities=15% Similarity=0.122 Sum_probs=199.2
Q ss_pred hhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 214 ENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 214 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
...+..|.+.|-+.+|.+.++.+..+ ..++.+..|..+|.+. ..+..|+..+.+.++. .+..-+..++.++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri-----dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI-----DQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh-----ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 46788899999999999999999887 7899999999999888 4899999999999986 56666777888999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCC
Q 009801 291 RGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGI 366 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~ 366 (525)
. .++.++|.++|+.+++.. +.++..-+|.-|+. .++++-|+.+|++.+++| +++.+.++|.+..-
T Consensus 302 a----m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-- 370 (478)
T KOG1129|consen 302 A----MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-- 370 (478)
T ss_pred H----HHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh--
Confidence 8 999999999999999875 66666666666665 359999999999999985 88999999999998
Q ss_pred CCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCC
Q 009801 367 GVKRDVKLACKYFLVAANA-----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGD 439 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~ 439 (525)
-++++-++..|++|+.. .-++.|++||.+... .||+.-|..+|+.++..+ +.+++.+||.+-.+.|+
T Consensus 371 --aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~----iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 371 --AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT----IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred --hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe----ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 89999999999999865 246789999998876 899999999999999876 58899999999999999
Q ss_pred HHHHHHHHHHHHHcC--hHHHHHHHHHHHhh
Q 009801 440 VGKAFLLYSRMAELG--YEVAQSNAAWILDK 468 (525)
Q Consensus 440 ~~~A~~~~~~a~~~~--~~~a~~~la~~~~~ 468 (525)
.++|..++..|.... -.+..+|++.+-++
T Consensus 445 i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred hHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 999999999887652 34455666654443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-12 Score=125.28 Aligned_cols=339 Identities=16% Similarity=0.097 Sum_probs=249.3
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhh----------cCCC----ccCCHHH
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYG----------MGMM----RERNKGK 146 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~----------~g~g----~~~d~~~ 146 (525)
..+...|..|..|.. ..+.++|..+|.+|. +..+.++.-.|=.... .+.. ...+.+.
T Consensus 139 ~essic~lRgk~y~a-------l~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~ 211 (611)
T KOG1173|consen 139 LESSICYLRGKVYVA-------LDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVER 211 (611)
T ss_pred chhceeeeeeehhhh-------hccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHH
Confidence 346667777887765 778999999999974 4455555433222111 1100 0112222
Q ss_pred HHHHHHHH----Hc---------------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhh
Q 009801 147 AFLYHHFA----AE---------------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIR 207 (525)
Q Consensus 147 A~~~~~~a----~~---------------~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 207 (525)
=...|+.- .+ ..+.......+..+....++.+-.++...+.+.+|.....
T Consensus 212 l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~----------- 280 (611)
T KOG1173|consen 212 LEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC----------- 280 (611)
T ss_pred HHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch-----------
Confidence 23333311 00 1356777788888899999999999999988876543211
Q ss_pred hcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHH
Q 009801 208 IHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSME 283 (525)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 283 (525)
....++ .+...|+..+-+-+--+.++ |..+-.++.+|..|... +++.+|.++|-|+... ....+|.
T Consensus 281 ----~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i-----~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 281 ----LPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI-----GKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred ----HHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh-----cCcHHHHHHHHHHhhcCccccHHHH
Confidence 111223 23344454444444444444 57889999999999877 4999999999999876 4578999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH
Q 009801 284 FLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG 359 (525)
Q Consensus 284 ~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 359 (525)
..|..|.. ++..++|+..|..|.+. |.......+|.-|.. .++.+-|.++|.+|... .+|-....+|
T Consensus 351 ~fghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-----t~n~kLAe~Ff~~A~ai~P~Dplv~~Elg 421 (611)
T KOG1173|consen 351 AFGHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-----TNNLKLAEKFFKQALAIAPSDPLVLHELG 421 (611)
T ss_pred HHhHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-----hccHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 99999998 99999999999999875 555566777877765 45999999999999876 7899999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHH
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA----G-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLS 428 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~----~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~ 428 (525)
.+... .+.+.+|..||+.++.. + ....+.+||.++.. .+.+++|+.+|++++... ++..+.
T Consensus 422 vvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----l~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 422 VVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----LNKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred heeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH----HhhHHHHHHHHHHHHHcCCCchhHHH
Confidence 99999 99999999999999832 1 34458999999998 999999999999999987 477888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
.+|.++..+|+++.|+..|.+|+.. ++..+---|+.+.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999876 4444444455554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-12 Score=124.03 Aligned_cols=210 Identities=8% Similarity=0.010 Sum_probs=144.1
Q ss_pred hhccCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC--HH--------HHHHHHH
Q 009801 220 RKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE--PQ--------SMEFLGE 287 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~--~~--------a~~~Lg~ 287 (525)
+...|++++|+..+++. ..|+++.+...++.+|... +++++|+..+.+..+... +. ++..+..
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-----gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-----GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33334444444444433 3457888899999999877 499999988888876532 22 1111111
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHc
Q 009801 288 IYARGAGVERNYTKALEWLTHAA--RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYK 364 (525)
Q Consensus 288 ~y~~g~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~ 364 (525)
.... ..+.+...++++... ...++.+...++..+.. .|+.++|.+.++++++.. ++......+.+ .
T Consensus 238 ~~~~----~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~ 306 (398)
T PRK10747 238 QAMA----DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-----CDDHDTAQQIILDGLKRQYDERLVLLIPRL--K 306 (398)
T ss_pred HHHH----hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--c
Confidence 1111 223344444444332 23578888888888876 569999999999998853 33222222222 3
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhcCCHH
Q 009801 365 GIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS-SLSRWALESYLKGDVG 441 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-a~~~l~~~~~~~g~~~ 441 (525)
.++.++++...++.++. +++.....+|.++.. .+++++|.++|+++++..|.. .+..++.++...|+.+
T Consensus 307 ----~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~----~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 307 ----TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK----HGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred ----CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 57888899988888766 678888899999987 899999999999999998654 4578999999999999
Q ss_pred HHHHHHHHHHHc
Q 009801 442 KAFLLYSRMAEL 453 (525)
Q Consensus 442 ~A~~~~~~a~~~ 453 (525)
+|..+|++++..
T Consensus 379 ~A~~~~~~~l~~ 390 (398)
T PRK10747 379 EAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-12 Score=126.75 Aligned_cols=276 Identities=13% Similarity=-0.001 Sum_probs=188.2
Q ss_pred cCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhH
Q 009801 141 ERNKGKAFLYHHFAAEGG--NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~--~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
.||++.|.+...++.+.. ...++...|.+....|++++|.++++++.+..+.... ......+.
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l---------------~~~~~~a~ 161 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI---------------LVEIARTR 161 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch---------------HHHHHHHH
Confidence 667777777777766542 3344555566666777777777777776543222100 00112355
Q ss_pred hhhccCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--CHHHHH----HHHHHHH
Q 009801 219 LRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSME----FLGEIYA 290 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~----~Lg~~y~ 290 (525)
++...+++++|...++... .|+++.++..++.++... +|++.|.+.+.+..+.+ ++.... ....-..
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~-----~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS-----GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 5666677777777776654 458899999999999888 49999999999988763 222221 1111112
Q ss_pred cCCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhH----HHHHHH
Q 009801 291 RGAGVERNYTKALEWLTHAARQ------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG----HYNLGV 360 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a----~~~lg~ 360 (525)
. .+..+++...+.++.+. .++.....++..+.. .|++++|++.++++++...... ......
T Consensus 237 ~----~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~-----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 237 D----EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID-----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI 307 (409)
T ss_pred H----HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHhhCCCcccchhHHHHHh
Confidence 2 22333344455555432 377888889888876 5699999999999998632222 122333
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHc--CCH--HHHHHHHHHHHcCCCCcCCHHHHHHHHH--HHHHcCC-hHHHHHHHHH
Q 009801 361 MYYKGIGVKRDVKLACKYFLVAANA--GHQ--KAFYQLAKMFHTGVGLKKNLHMATALYK--LVAERGP-WSSLSRWALE 433 (525)
Q Consensus 361 ~y~~g~~~~~~~~~A~~~~~~a~~~--~~~--~a~~~l~~~y~~g~g~~~~~~~A~~~~~--~a~~~~~-~~a~~~l~~~ 433 (525)
.... .++..++...++++.+. +++ .....+|.++.. .+++++|.++|+ ++.+..| +..+..+|.+
T Consensus 308 ~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~----~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 308 PRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK----HGEFIEAADAFKNVAACKEQLDANDLAMAADA 379 (409)
T ss_pred hhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence 3344 57788899999998877 677 777899999987 999999999999 4666654 4556799999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 009801 434 SYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (525)
+...|+.++|..+|++++..
T Consensus 380 l~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-13 Score=126.22 Aligned_cols=207 Identities=16% Similarity=0.101 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCc
Q 009801 262 DRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~ 333 (525)
..+.++.-+.+++.. ..+..++.+|.+|.. .|++++|+..|+++++.. ++.+++.+|.++.. .
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-----~ 111 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-----A 111 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----C
Confidence 456677778777752 336779999999998 999999999999998864 78999999999987 6
Q ss_pred cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHcCCCCcCCHHH
Q 009801 334 KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK-MFHTGVGLKKNLHM 410 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~-~y~~g~g~~~~~~~ 410 (525)
+++++|+..|+++++. +++.++.++|.++.. .+++++|+..++++++.........+.. +... .+++++
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~ 183 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQ 183 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHH
Confidence 7999999999999876 578899999999999 9999999999999998743222222222 2233 678999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHH--HHHHHHHH----Hc--ChHHHHHHHHHHHhhhCCCccccCCCCCC
Q 009801 411 ATALYKLVAERGPWSSLSRWALESYLKGDVGKA--FLLYSRMA----EL--GYEVAQSNAAWILDKYGEGSMCMGESGFC 482 (525)
Q Consensus 411 A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A--~~~~~~a~----~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~ 482 (525)
|+..+++++...++..+. .+.+....|+..++ +..+.++. +. ..+.+++++|.++..
T Consensus 184 A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~-------------- 248 (296)
T PRK11189 184 AKENLKQRYEKLDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLS-------------- 248 (296)
T ss_pred HHHHHHHHHhhCCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH--------------
Confidence 999998887665444433 45666667766443 33333222 22 356799999999998
Q ss_pred CChHhHHHHHHHHHHHHhCC
Q 009801 483 TDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+++++|+.+|++|++.+
T Consensus 249 --~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 249 --LGDLDEAAALFKLALANN 266 (296)
T ss_pred --CCCHHHHHHHHHHHHHhC
Confidence 778999999999999876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-13 Score=125.50 Aligned_cols=77 Identities=10% Similarity=-0.032 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHHHhc------CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHH
Q 009801 106 RVMEEATSEVESAAME------GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHD 177 (525)
Q Consensus 106 ~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~ 177 (525)
...+.++..+.+.... ..+..++.+|.+|.. .++.++|+..|+++++. +++.+++.+|.++...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 3455566666664421 113445555555554 44555555555554432 34444444444444444444
Q ss_pred HHHHHHHHH
Q 009801 178 KAVKLYAEL 186 (525)
Q Consensus 178 ~A~~~y~~~ 186 (525)
+|+..|+++
T Consensus 116 ~A~~~~~~A 124 (296)
T PRK11189 116 AAYEAFDSV 124 (296)
T ss_pred HHHHHHHHH
Confidence 444444444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=127.07 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=190.9
Q ss_pred HHHHHhhhcCCCccCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhh
Q 009801 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI 206 (525)
Q Consensus 128 ~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~ 206 (525)
..+|.+|.. .+-+..|.+.++.++++ .+++....|...|-+.+.+..|+..|.+.++.
T Consensus 227 ~Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----------------- 285 (478)
T KOG1129|consen 227 QQMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----------------- 285 (478)
T ss_pred HHHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-----------------
Confidence 568888888 77888888888888876 58888888888888888888888888776542
Q ss_pred hhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHH
Q 009801 207 RIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEF 284 (525)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 284 (525)
-|.+.-.....++++... ++++.|+++|+.+++. .+.++.-.
T Consensus 286 -------------------------------fP~~VT~l~g~ARi~eam-----~~~~~a~~lYk~vlk~~~~nvEaiAc 329 (478)
T KOG1129|consen 286 -------------------------------FPFDVTYLLGQARIHEAM-----EQQEDALQLYKLVLKLHPINVEAIAC 329 (478)
T ss_pred -------------------------------CCchhhhhhhhHHHHHHH-----HhHHHHHHHHHHHHhcCCccceeeee
Confidence 235566667778888777 4999999999999987 45667777
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----CChhHHHH
Q 009801 285 LGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYN 357 (525)
Q Consensus 285 Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 357 (525)
+|.-|+. .++++-|+.+|++.+.+| +++...++|.+.+. .++++-++..|++|+.. .-++.|++
T Consensus 330 ia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-----aqQ~D~~L~sf~RAlstat~~~~aaDvWYN 400 (478)
T KOG1129|consen 330 IAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-----AQQIDLVLPSFQRALSTATQPGQAADVWYN 400 (478)
T ss_pred eeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-----hcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence 7777777 789999999999999997 89999999999987 34899999999999865 24678999
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHH
Q 009801 358 LGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWAL 432 (525)
Q Consensus 358 lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~ 432 (525)
||.+.-. .+|+.-|.+.|+.++.. +|.+++++||.+-.. .|+.+.|..++..|-...| .+..++++.
T Consensus 401 lg~vaV~----iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r----~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 401 LGFVAVT----IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR----SGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred cceeEEe----ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh----cCchHHHHHHHHHhhhhCccccccccceeE
Confidence 9999998 99999999999999865 689999999998887 8999999999998877765 344455543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=119.09 Aligned_cols=188 Identities=17% Similarity=0.102 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a 354 (525)
+.++..+|.+|.. .+++++|+.+++++++.. +..++..+|.++.. .+++++|+++++++++. .++.+
T Consensus 31 ~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 31 AKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ-----LGELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHH
Confidence 4555666666666 666777777776666542 45666666666655 45667777777766654 34556
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+.++|.++.. .+++++|+.+++++++. .....+..+|.++.. .+++++|..++.++++..+ ..++.
T Consensus 102 ~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 102 LNNYGTFLCQ----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred HHHHHHHHHH----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 6667777766 67777777777776653 234566666777765 6777777777777776653 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
.+|.+++..|++++|..+++++++. .++..+..++.++.. .++.++|..+.+...
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA----------------LGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------HhhHHHHHHHHHHHH
Confidence 7777777777777777777777654 344555556666655 556666666655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=119.08 Aligned_cols=191 Identities=20% Similarity=0.149 Sum_probs=166.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LY 315 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~ 315 (525)
..+.+++.+|.++... +++++|+.+++++++. +++.++..+|.+|.. .+++++|+.+++++++.. +.
T Consensus 29 ~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQ----LGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred cHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCH
Confidence 3477889999999888 4999999999999875 567899999999999 999999999999999764 67
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
.+...+|.++.. .+++++|+.+++++++. ..+..+..+|.++.. .+++++|..+++++++. +++.
T Consensus 100 ~~~~~~~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 170 (234)
T TIGR02521 100 DVLNNYGTFLCQ-----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPE 170 (234)
T ss_pred HHHHHHHHHHHH-----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChH
Confidence 889999999986 56999999999999875 345688899999999 99999999999999877 5678
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++..++.++.. .+++++|+.+++++++..+ +..+..++.++...|+.++|..+.+....
T Consensus 171 ~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 171 SLLELAELYYL----RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 89999999998 9999999999999988743 56667788889999999999998876654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-12 Score=137.95 Aligned_cols=381 Identities=13% Similarity=0.008 Sum_probs=242.8
Q ss_pred CCCCCCCccccCCCCCC-CCccc--HHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcC---ChHHHHHHHHhhhcCCCc
Q 009801 67 LDPGSWSPVFEPSIDPG-AINGS--YYITISKMMSAVTNGDVRVMEEATSEVESAAMEG---DPHARSVLGFLYGMGMMR 140 (525)
Q Consensus 67 ~~~~~a~~~~~~~~~~~-~~~a~--~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~ 140 (525)
+++.+|..+|.+....+ .|+.. ..+-..+.. .++.+.|.+.+....+.| +...+..|-..|..
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~-------~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k---- 335 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACEL-------LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS---- 335 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh----
Confidence 45566666666653222 22222 222222222 667888888888876654 56777788888887
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
.++.++|.+.|++... .+..++..+...|.+.|++++|++.|++..+.+.... .......-..+
T Consensus 336 ~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd---------------~~t~~~ll~a~ 399 (857)
T PLN03077 336 LGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD---------------EITIASVLSAC 399 (857)
T ss_pred cCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC---------------ceeHHHHHHHH
Confidence 8899999999988654 4566788888999999999999999998765532110 01122233344
Q ss_pred hccCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 009801 221 KSRGEDDEAFQILEYQAQKG---NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVER 297 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~~---~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~ 297 (525)
...|+.++|.++++...+.+ +...+..|...|.+. ++.++|.+.|++..+ .+..+|..+-..|.. .+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~-----g~~~~A~~vf~~m~~-~d~vs~~~mi~~~~~----~g 469 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC-----KCIDKALEVFHNIPE-KDVISWTSIIAGLRL----NN 469 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc-----CCHHHHHHHHHhCCC-CCeeeHHHHHHHHHH----CC
Confidence 55666666666666665553 344555566666555 366666666665433 233455555555555 55
Q ss_pred CHHHHHHHHHHHHH----------------------------------cC---CHHHHHHHHHHHHhCCCCCccCHHHHH
Q 009801 298 NYTKALEWLTHAAR----------------------------------QQ---LYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (525)
Q Consensus 298 ~~~~A~~~~~~a~~----------------------------------~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~ 340 (525)
+.++|+..|++... .+ +......|-.+|.. .|+.++|.
T Consensus 470 ~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k-----~G~~~~A~ 544 (857)
T PLN03077 470 RCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR-----CGRMNYAW 544 (857)
T ss_pred CHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH-----cCCHHHHH
Confidence 66666666666543 22 11122223344443 45888888
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 341 EYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 341 ~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
..|+.. ..+..+|..+...|.. .++.++|+..|++..+.| +...+..+-..+.. .++.++|.++|+.
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~ea~~~f~~ 614 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR----SGMVTQGLEYFHS 614 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHHHHHHHHHH
Confidence 888876 5677788888888888 889999999998877653 33344444444554 7889999999998
Q ss_pred HHH-cC--C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHH
Q 009801 418 VAE-RG--P-WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHS 493 (525)
Q Consensus 418 a~~-~~--~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 493 (525)
..+ .+ | ...+..+...+.+.|+.++|...+++.--..+...+..|-..+.. .++.+.|..
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~----------------~~~~e~~e~ 678 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI----------------HRHVELGEL 678 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------------cCChHHHHH
Confidence 874 33 2 346678888899999999999988875322345555554444443 334566666
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHH
Q 009801 494 LWWQASEQ--GNEHAALLIGDAYY 515 (525)
Q Consensus 494 ~~~~a~~~--~~~~a~~~lg~~y~ 515 (525)
..++.++. +++..+..|+++|-
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHH
Confidence 66666554 36777778888885
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-13 Score=130.70 Aligned_cols=237 Identities=20% Similarity=0.175 Sum_probs=144.5
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-------CCH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-------GNI---QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~~---~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~ 194 (525)
.+...||.+|.. .+++++|+.++++|++. .++ ..+..+|.+|...+++++|+.+|++++......+
T Consensus 200 ~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 200 RTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 444557777777 77777787777777664 232 2334477777777777777777777765432221
Q ss_pred hccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 009801 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274 (525)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~ 274 (525)
.. ..+..+.++.+||.+|... +++.+|..++++|+
T Consensus 276 G~----------------------------------------~h~~va~~l~nLa~ly~~~-----GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 276 GE----------------------------------------DHPAVAATLNNLAVLYYKQ-----GKFAEAEEYCERAL 310 (508)
T ss_pred CC----------------------------------------CCHHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHH
Confidence 10 1112356789999999877 49999999999998
Q ss_pred hc-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 009801 275 DK-------GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (525)
Q Consensus 275 ~~-------~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~ 344 (525)
+. .+ +..+.+++.++.. .+++++|..+++++++.- .
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~al~i~------------~------------------ 356 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQKALKIY------------L------------------ 356 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHH------------H------------------
Confidence 64 11 3456667777777 777777777777765430 0
Q ss_pred HHHhC---CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 345 KAADN---EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----------GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 345 ~a~~~---~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
.+... ..+....+||.+|.. .+++++|..+|++|+.+ +....++++|..|.. .+++.+|
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~----~k~~~~a 428 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE----LKKYEEA 428 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH----hcccchH
Confidence 00000 123344556666666 66666666666666533 123455666666655 4555555
Q ss_pred HHHHHHHHHc------CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 412 TALYKLVAER------GP---WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 412 ~~~~~~a~~~------~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
...|..+... ++ ...+.+|+-+|-.+|++++|+++.++++.
T Consensus 429 ~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5555444322 22 23555777777777777777777777663
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-11 Score=121.29 Aligned_cols=283 Identities=13% Similarity=-0.023 Sum_probs=207.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc--CC
Q 009801 164 MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GN 241 (525)
Q Consensus 164 ~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~ 241 (525)
..-|.+-...|+++.|.+...++.+..+... -...-.+.+....|++++|.++++++.+. ++
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----------------~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~ 151 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPV----------------LNLIKAAEAAQQRGDEARANQHLEEAAELAGND 151 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 4556778889999999999988766432211 01233566778899999999999998664 32
Q ss_pred -HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHH
Q 009801 242 -AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYS 316 (525)
Q Consensus 242 -~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 316 (525)
..+....+.++... +++++|...+++..+. +++.++..++.+|.. .+|+++|++.+.+..+.+ ++.
T Consensus 152 ~l~~~~~~a~l~l~~-----~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 152 NILVEIARTRILLAQ-----NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred chHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHH
Confidence 23455568888887 4999999999998875 788999999999999 999999999999998764 222
Q ss_pred HHH----HHHHHHHhCCCCCccCHHHHHHHHHHHHhC------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 317 AYN----GIGYLYVKGYGVEKKNYTKAKEYFEKAADN------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 317 a~~----~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
... ....-... .+..+++...+.++.+. +++.....++..+.. .+++++|...++++++..
T Consensus 223 ~~~~l~~~a~~~~l~-----~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 223 EFADLEQKAEIGLLD-----EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHHHHHHHHHHHHHH-----HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhC
Confidence 221 11111111 11333344455555433 478899999999999 999999999999999873
Q ss_pred --CHHHH--HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--h--HHHHHHHHHHHhcCCHHHHHHHHHH--HHHc-Ch
Q 009801 387 --HQKAF--YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--W--SSLSRWALESYLKGDVGKAFLLYSR--MAEL-GY 455 (525)
Q Consensus 387 --~~~a~--~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~--~a~~~l~~~~~~~g~~~~A~~~~~~--a~~~-~~ 455 (525)
+.... ......... .++.+++++.++++++..| + .....+|++++..|++++|.+++++ +.+. .+
T Consensus 294 pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred CCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 22211 122222232 5788999999999998865 4 4456899999999999999999995 5554 34
Q ss_pred HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 456 ~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
+..+..+|.++.+ .++.++|.++|++++.
T Consensus 370 ~~~~~~La~ll~~----------------~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 370 ANDLAMAADAFDQ----------------AGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHH
Confidence 4456699999998 5678999999999875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.1e-11 Score=118.02 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=206.9
Q ss_pred HHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC-CHHHHHHH-HHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCch
Q 009801 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-NIQSKMAV-AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIE 204 (525)
Q Consensus 127 ~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~a~~~l-a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~ 204 (525)
.+.-|.+... .||+++|.+...++.+.. ++...+.+ +......|+++.|..++.++.+..
T Consensus 87 ~~~~gl~a~~----eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-------------- 148 (398)
T PRK10747 87 QTEQALLKLA----EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA-------------- 148 (398)
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3455555554 789999999988887753 44444445 444477888888888888875532
Q ss_pred hhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHH
Q 009801 205 PIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG-AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQS 281 (525)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a 281 (525)
++... .....+.++... +++++|+..+++..+. +++.+
T Consensus 149 ----------------------------------~~~~~~~~l~~a~l~l~~-----g~~~~Al~~l~~~~~~~P~~~~a 189 (398)
T PRK10747 149 ----------------------------------DNDQLPVEITRVRIQLAR-----NENHAARHGVDKLLEVAPRHPEV 189 (398)
T ss_pred ----------------------------------CcchHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCCCHHH
Confidence 12221 223347888777 4999999999998875 78999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHH------HHHHHHHhCCCCCccCHHHHHHHHHHHHh--CCC
Q 009801 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYN------GIGYLYVKGYGVEKKNYTKAKEYFEKAAD--NEE 351 (525)
Q Consensus 282 ~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~------~lg~~~~~g~~~~~~~~~~A~~~~~~a~~--~~~ 351 (525)
+..++.+|.. .+++++|+..+.+..+.. ++.... .++.+-.. ....+.+...++++...+ .++
T Consensus 190 l~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~---~~~~~~~~l~~~w~~lp~~~~~~ 262 (398)
T PRK10747 190 LRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA---MADQGSEGLKRWWKNQSRKTRHQ 262 (398)
T ss_pred HHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHhCCHHHhCC
Confidence 9999999999 999999999999988764 222111 11111111 001133444444444322 368
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+.+...++..+.. .++.++|...++++++.. ++......+.+ . .++.++++...++.++..| +....
T Consensus 263 ~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~----~~~~~~al~~~e~~lk~~P~~~~l~l 332 (398)
T PRK10747 263 VALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRL--K----TNNPEQLEKVLRQQIKQHGDTPLLWS 332 (398)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--c----CCChHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999 999999999999999863 44332222322 2 5799999999999998875 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAELG-YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.+|.++...+++++|..+|+++++.. +...+..++.++.. .++.++|..+|++++..
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~----------------~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR----------------LHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhh
Confidence 89999999999999999999999984 44556789999998 66789999999999764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-11 Score=133.20 Aligned_cols=205 Identities=12% Similarity=0.022 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHH
Q 009801 262 DRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTK 338 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~ 338 (525)
+.+.+.+.+..+++.+ +......|-.+|.+ .|+.++|...|+.. ..+..++..+...|.. .|+.++
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~-----~G~~~~ 572 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH--EKDVVSWNILLTGYVA-----HGKGSM 572 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHH----cCCHHHHHHHHHhc--CCChhhHHHHHHHHHH-----cCCHHH
Confidence 4455555555444432 22233445567777 89999999999987 5678888888888876 569999
Q ss_pred HHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 339 AKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 339 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
|+..|++..+.+ +..++..+-..+.. .++.++|..+|+...+. .+...+..+..++.. .|++++|
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r----~G~~~eA 644 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSR----SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR----AGKLTEA 644 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHH
Confidence 999999988764 44566666667777 89999999999998743 355677788888887 8999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHH
Q 009801 412 TALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (525)
Q Consensus 412 ~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (525)
.+++++.--..+...+..|-..+...|+.+.|....++..+. +++..+..++.+|.. .++++
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~----------------~g~~~ 708 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD----------------AGKWD 708 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----------------CCChH
Confidence 999987632224555666666778889999998888888766 567788888999887 66788
Q ss_pred HHHHHHHHHHhC
Q 009801 490 CAHSLWWQASEQ 501 (525)
Q Consensus 490 ~A~~~~~~a~~~ 501 (525)
+|.+..+.--+.
T Consensus 709 ~a~~vr~~M~~~ 720 (857)
T PLN03077 709 EVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHHc
Confidence 888887765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.1e-11 Score=120.38 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 141 ERNKGKAFLYHHFAAEGG--NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~--~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.||.+.|++.+..++.++ ++.+++.||.+|.+.|+.++++...-.++.+.+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p 204 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP 204 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 678888888888888764 678888888888888888888887777665433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-11 Score=115.48 Aligned_cols=396 Identities=17% Similarity=0.102 Sum_probs=248.7
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.+|+..|+.+|..+ ++|.|.--+-+..-.|.. .++|++|+.--.+.. .|.-+.++..+|..... .
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~-------~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~----l 83 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS-------LGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG----L 83 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHH-------HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh----c
Confidence 47788888888888 666654444455555655 888999999888865 56778889999998887 8
Q ss_pred CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhcc-----------------ccHH----HHHHHHHHHHHHHHhh---hh
Q 009801 142 RNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQ-----------------DMHD----KAVKLYAELAEIAVNS---FL 195 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~-----------------~~~~----~A~~~y~~~~~~~~~~---~~ 195 (525)
+++++|+..|.+.++. +|......|+..+... +++. -.-..|...++..+.+ ..
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 8999999999999875 4666667777666221 0000 0111222222222111 10
Q ss_pred ccCC-CCCchhhhhccc----chhhhhHhhhccCCcH-----HHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 009801 196 ISKD-SPVIEPIRIHNG----AEENKGALRKSRGEDD-----EAF----QILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 196 ~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~A~----~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
.... ..+......-.+ .....+.+........ +.. +..+..-........-.||...+.. +
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk-----k 238 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK-----K 238 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh-----h
Confidence 0000 000000000000 0000000000000000 000 0000001112344566788887655 6
Q ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC-H--------HHHHHHHHHHHhCCCC
Q 009801 262 DRTKALMWFSKAADKG-EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL-Y--------SAYNGIGYLYVKGYGV 331 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-~--------~a~~~lg~~~~~g~~~ 331 (525)
++..|++.|.++++.. +..-+.+.+-+|.. .+.+.+.+.....+++.+. . .+...+|..|..
T Consensus 239 ~f~~a~q~y~~a~el~~~it~~~n~aA~~~e----~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k---- 310 (539)
T KOG0548|consen 239 DFETAIQHYAKALELATDITYLNNIAAVYLE----RGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK---- 310 (539)
T ss_pred hHHHHHHHHHHHHhHhhhhHHHHHHHHHHHh----ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh----
Confidence 9999999999999875 33445678888888 8899999999999888761 1 223334444543
Q ss_pred CccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCcCCHH
Q 009801 332 EKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH--QKAFYQLAKMFHTGVGLKKNLH 409 (525)
Q Consensus 332 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~y~~g~g~~~~~~ 409 (525)
.++++.++.+|++++..... ..+..+ .+..++++...+..+-.+. ......-|..++. .+|+.
T Consensus 311 -~~~~~~ai~~~~kaLte~Rt------~~~ls~----lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~ 375 (539)
T KOG0548|consen 311 -REDYEGAIKYYQKALTEHRT------PDLLSK----LKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYP 375 (539)
T ss_pred -HHhHHHHHHHHHHHhhhhcC------HHHHHH----HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHH
Confidence 46999999999998755322 344444 5555666655554433322 2233344667776 88999
Q ss_pred HHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCCh
Q 009801 410 MATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDA 485 (525)
Q Consensus 410 ~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~ 485 (525)
+|+..|.+|+..+| +..+.+.|.+|..+|++..|+...+.+++.+ ...++..-|.++.. .
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~----------------m 439 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA----------------M 439 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----------------H
Confidence 99999999998875 4567788888999999999999988888874 56688888888877 8
Q ss_pred HhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Q 009801 486 ERHQCAHSLWWQASEQG--NEHAALLIGDAYYY 516 (525)
Q Consensus 486 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~ 516 (525)
++|++|+..|+++++.+ +.++.-.+..|+.-
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 88999999999998877 56677777777773
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-12 Score=126.78 Aligned_cols=227 Identities=16% Similarity=0.108 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
..+..|+..|..++++++|+..++++++.-...+. . ..+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-----------------------------~-----------~hl~ 239 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-----------------------------L-----------KHLV 239 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-----------------------------c-----------cCHH
Confidence 45666888888888888888888888765221110 0 0001
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
-...+..+|.+|... +++.+|+..|++|+.. .+ +..+.+||.+|.. .+++++|..++++|+
T Consensus 240 va~~l~~~a~~y~~~-----~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 240 VASMLNILALVYRSL-----GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHH
Confidence 122333689999888 4999999999999864 23 3578899999988 999999999999997
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----
Q 009801 311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----- 385 (525)
Q Consensus 311 ~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----- 385 (525)
+.-.. .+.. +..+ .+..+.+++.++.. .+++++|..+|.+++++
T Consensus 311 ~I~~~--------~~~~-------~~~~------------v~~~l~~~~~~~~~----~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 311 EIYEK--------LLGA-------SHPE------------VAAQLSELAAILQS----MNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHH--------hhcc-------ChHH------------HHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhhc
Confidence 64100 0000 0000 11223444455555 55555555555555432
Q ss_pred --CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 386 --GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----------PWSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 386 --~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
.+ +....+||.+|.. .|++++|.++|++|+... ...+..++|..+.+.+++.+|...|.++
T Consensus 360 g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 22 4567889999998 999999999999998662 1457889999999999999999988888
Q ss_pred HHc---------ChHHHHHHHHHHHhhhCC
Q 009801 451 AEL---------GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 451 ~~~---------~~~~a~~~la~~~~~~~~ 471 (525)
... +....+.||+.+|...|.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 642 345588899999988666
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=126.51 Aligned_cols=222 Identities=15% Similarity=0.118 Sum_probs=180.4
Q ss_pred hhhHhhhccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 215 NKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 215 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
..|..+.+.|+..+|.-.|+.++.. ++.+|+..||.+.... .+-..|+.-+++++++ ++-.++..||..|.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-----E~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-----ENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-----cchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 3566677888888898888888765 7999999999999888 4889999999999986 78899999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---C-CCccCHHHHHHHHHHHHhC----CChhHHHHHHHHH
Q 009801 291 RGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGY---G-VEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMY 362 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~---~-~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 362 (525)
. ++.-.+|+.++.+-+....+..+...+..-.... . ........-.++|..+... .+++.+..||.+|
T Consensus 365 N----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 365 N----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred h----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9 9999999999999987764433322211111000 0 1111334444556665543 4799999999999
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC
Q 009801 363 YKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG 438 (525)
Q Consensus 363 ~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g 438 (525)
.. .+++++|+..|+.|+.. .+...|+.||..+.+ ..+.++|+..|.+|+++.| ..+.++||..++.+|
T Consensus 441 ~l----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 441 NL----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hc----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 99 99999999999999976 688899999999998 7889999999999999975 789999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 009801 439 DVGKAFLLYSRMAEL 453 (525)
Q Consensus 439 ~~~~A~~~~~~a~~~ 453 (525)
.|++|.++|-.|+.+
T Consensus 513 ~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSM 527 (579)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-11 Score=106.24 Aligned_cols=255 Identities=17% Similarity=0.159 Sum_probs=147.1
Q ss_pred cHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC------C
Q 009801 88 SYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG------N 159 (525)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------~ 159 (525)
-|..|.-++. .++.++|+..|...+ +++..+++..||.+|.+ .|..++|+..-+...+.. .
T Consensus 38 ~Yv~GlNfLL-------s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr 106 (389)
T COG2956 38 DYVKGLNFLL-------SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQR 106 (389)
T ss_pred HHHhHHHHHh-------hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHH
Confidence 4666776665 667889999888855 55667888999999998 889999999888777642 2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..|+..||.=|+..|-+|.|...|..+++.+.-
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef----------------------------------------------- 139 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF----------------------------------------------- 139 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-----------------------------------------------
Confidence 467888888888888888888888887653211
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
-..|.-.|-.+|... +++++|+..-++..+.+. +.-+..|+..+.. ..+.++|+.++++|++.
T Consensus 140 -a~~AlqqLl~IYQ~t-----reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 140 -AEGALQQLLNIYQAT-----REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVDRARELLKKALQA 209 (389)
T ss_pred -hHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhh
Confidence 123334444444333 355555555554444321 2233334444444 44555555555555544
Q ss_pred C--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-C
Q 009801 313 Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-G 386 (525)
Q Consensus 313 ~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~ 386 (525)
+ ...+-..+|.+... +|++++|++.++++++++. +.+...|-.+|.. .++.++...++.++.+. .
T Consensus 210 ~~~cvRAsi~lG~v~~~-----~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 210 DKKCVRASIILGRVELA-----KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ----LGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred CccceehhhhhhHHHHh-----ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccC
Confidence 3 33344445555543 3455555555555555432 3344445555555 55555555555555544 2
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
.+.+...++...+. ..-.+.|..+..+-+...|
T Consensus 281 g~~~~l~l~~lie~----~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 281 GADAELMLADLIEL----QEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred CccHHHHHHHHHHH----hhChHHHHHHHHHHHhhCC
Confidence 33344444444443 3344445444444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-12 Score=123.14 Aligned_cols=224 Identities=14% Similarity=0.057 Sum_probs=159.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH--HHcCCH
Q 009801 165 AVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--AQKGNA 242 (525)
Q Consensus 165 ~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~~~ 242 (525)
..|..+++.|+..+|.-.|+.++..+|.... .+..+|.+....++-..||..++++ ++|++.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~hae----------------AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl 353 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAE----------------AWQKLGITQAENENEQNAISALRRCLELDPTNL 353 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHH----------------HHHHhhhHhhhccchHHHHHHHHHHHhcCCccH
Confidence 3445555555555555555555555544431 2444555555555555566666655 456889
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHc----C
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGA-----GVERNYTKALEWLTHAARQ----Q 313 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~-----~~~~~~~~A~~~~~~a~~~----~ 313 (525)
+++..||..|-.. +.-.+|++.+.+=+....+..+..-+..=..+. ........-.++|..++.. .
T Consensus 354 eaLmaLAVSytNe-----g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 354 EALMALAVSYTNE-----GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999777 378889999988776554443322211111100 0112344455666666544 2
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+++.+..||.+|.. .+++++|+.+|+.|+.. ++...|+.||-.+.. -.+..+|+..|.+|+++ +..+
T Consensus 429 DpdvQ~~LGVLy~l-----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNL-----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred ChhHHhhhHHHHhc-----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHHHHHHHHHHhcCCCeee
Confidence 79999999999976 56999999999999876 688899999999999 88999999999999988 7899
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
+.++||..+.+ .|.|++|+++|-.|+.+.
T Consensus 500 ~RyNlgIS~mN----lG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 500 VRYNLGISCMN----LGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred eehhhhhhhhh----hhhHHHHHHHHHHHHHhh
Confidence 99999999998 999999999999998763
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=120.66 Aligned_cols=250 Identities=20% Similarity=0.202 Sum_probs=192.2
Q ss_pred HhhhccCCcHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--------hcCCHHHHH
Q 009801 218 ALRKSRGEDDEAFQILEYQAQKGN------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA--------DKGEPQSME 283 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~~~------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~--------~~~~~~a~~ 283 (525)
.-..+.|+....+.+|+.+++.|. ...+..||..|... +||++|+++..--+ +.|.+.+.-
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL-----~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYL-----KDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhH-----hhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 345678999999999999988764 34567788888766 59999999876533 236778889
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHh-CC--CC--C----------ccCHHHHH
Q 009801 284 FLGEIYARGAGVERNYTKALEWLTHAARQ--------QLYSAYNGIGYLYVK-GY--GV--E----------KKNYTKAK 340 (525)
Q Consensus 284 ~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~-g~--~~--~----------~~~~~~A~ 340 (525)
+||..+.. .|++++|+.++.+-+.. ....++++||.+|.. |. |. + ....+.|.
T Consensus 100 NLGNtlKv----~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 100 NLGNTLKV----KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccchhhh----hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 99999987 99999999999887643 357799999999963 32 10 0 01355666
Q ss_pred HHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCC
Q 009801 341 EYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGL 404 (525)
Q Consensus 341 ~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~ 404 (525)
++|+.-++. ++ ..++-+||..|+- .++++.|+.+-+.-+++ |+ -.++.+||.++.-
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif---- 247 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF---- 247 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----
Confidence 666665543 33 3466788888888 99999999887665433 43 4578899999986
Q ss_pred cCCHHHHHHHHHHHH----HcCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cChHHHHHHHHHHHhh
Q 009801 405 KKNLHMATALYKLVA----ERGP----WSSLSRWALESYLKGDVGKAFLLYSRMAE--------LGYEVAQSNAAWILDK 468 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~----~~~~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~--------~~~~~a~~~la~~~~~ 468 (525)
.++++.|+++|++++ ++++ ++..|.||..|....++++|+.|+.+=+. .|...+++.||..+..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 899999999999985 4443 66788999999999999999999987542 2678899999999988
Q ss_pred hCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 469 YGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.+..++|+.+.++.++
T Consensus 328 ----------------lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 ----------------LGEHRKALYFAELHLR 343 (639)
T ss_pred ----------------hhhHHHHHHHHHHHHH
Confidence 5567889888887664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=121.44 Aligned_cols=270 Identities=17% Similarity=0.176 Sum_probs=184.3
Q ss_pred hHhHHHHHHHHHHHHhcCCh------HHHHHHHHhhhcCCCccCCHHHHHHHHHHHH--------cCCCHHHHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDP------HARSVLGFLYGMGMMRERNKGKAFLYHHFAA--------EGGNIQSKMAVAYTY 170 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~------~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~--------~~~~~~a~~~la~~y 170 (525)
.++....+.+|+.+.+.|.. ..+..||..|.. .+|+++|++|-.--+ +.|...+.-+||..+
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 56677888888887766642 233456776666 778888877764322 135566677777777
Q ss_pred hccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH-HcCCHHHHHHHH
Q 009801 171 LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA-QKGNAGAMYKIG 249 (525)
Q Consensus 171 ~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~a~~~Lg 249 (525)
.-.|.+++|+.+..+-+..... .- ......|+|+||
T Consensus 106 Kv~G~fdeA~~cc~rhLd~are-------------------------------------------LgDrv~e~RAlYNlg 142 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARE-------------------------------------------LGDRVLESRALYNLG 142 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHH-------------------------------------------HhHHHhhhHHHhhhh
Confidence 7777777777766554332110 11 114578999999
Q ss_pred HHHHhcC---------------CCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 009801 250 LFYYFGL---------------RGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWL 306 (525)
Q Consensus 250 ~~y~~~~---------------~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~ 306 (525)
.+|...| ..+...++.|+++|..-+++ ++ ..++-+||..|+- .||++.|+...
T Consensus 143 nvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H 218 (639)
T KOG1130|consen 143 NVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFH 218 (639)
T ss_pred hhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHH
Confidence 9996654 01122466777777765543 32 3566778887777 89999999888
Q ss_pred HHHHHc----CC----HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHh----CC----ChhHHHHHHHHHHcCCCCcC
Q 009801 307 THAARQ----QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD----NE----EAGGHYNLGVMYYKGIGVKR 370 (525)
Q Consensus 307 ~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~----~~----~~~a~~~lg~~y~~g~~~~~ 370 (525)
+.-++. |+ -.++.+||.++.. .++++.|+++|++.+. .+ .+.+++.||..|.- .+
T Consensus 219 ~~RL~ia~efGDrAaeRRA~sNlgN~hif-----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl----l~ 289 (639)
T KOG1130|consen 219 KLRLEIAQEFGDRAAERRAHSNLGNCHIF-----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL----LK 289 (639)
T ss_pred HHHHHHHHHhhhHHHHHHhhcccchhhhh-----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----HH
Confidence 776543 32 3467888988875 6789999999988653 33 45678899999988 88
Q ss_pred CHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----hHHHHHHHHHH
Q 009801 371 DVKLACKYFLVAAN--------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----GP----WSSLSRWALES 434 (525)
Q Consensus 371 ~~~~A~~~~~~a~~--------~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~~ 434 (525)
++++|+.|..+-+. .|...+++.||..|.. .+..++|+.+..+.++. ++ ..+..++....
T Consensus 290 e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a----lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~ 365 (639)
T KOG1130|consen 290 EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA----LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLI 365 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHH
Confidence 99999998877542 2677888889988887 88888888888877654 22 23455666666
Q ss_pred HhcC
Q 009801 435 YLKG 438 (525)
Q Consensus 435 ~~~g 438 (525)
...|
T Consensus 366 ~~lG 369 (639)
T KOG1130|consen 366 LELG 369 (639)
T ss_pred HHhC
Confidence 6666
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-12 Score=102.86 Aligned_cols=199 Identities=18% Similarity=0.218 Sum_probs=145.8
Q ss_pred CCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hcCChHHHHHHHHhhhcCC-CccCCHHHHHHHHHHHHcCCC
Q 009801 82 PGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-MEGDPHARSVLGFLYGMGM-MRERNKGKAFLYHHFAAEGGN 159 (525)
Q Consensus 82 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~-g~~~d~~~A~~~~~~a~~~~~ 159 (525)
...|++.+.||-..- +..+|+++|.+.|++.. +.+.+.+.|.+|..+..|. |..++..+|+..|+.+.+.+.
T Consensus 31 EK~Pe~C~lLgdYlE------gi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~ 104 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLE------GIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI 104 (248)
T ss_pred cCCchHHHHHHHHHH------HHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC
Confidence 355888888887433 34889999999999965 6688999999999999887 478999999999999999999
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
+.+...+|.++.......++ .-+..+|.+++.++.+.
T Consensus 105 ~~aC~~~gLl~~~g~~~r~~-------------------------------------------dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 105 PQACRYLGLLHWNGEKDRKA-------------------------------------------DPDSEKAERYMTRACDL 141 (248)
T ss_pred HHHHhhhhhhhccCcCCccC-------------------------------------------CCCcHHHHHHHHHhccC
Confidence 99999999999886544332 12456788888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA-DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAY 318 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 318 (525)
++..+++.|..+|..+. ++ +..+. -.+.|.-...++.+ .+|.++|.++--+|++.+++.++
T Consensus 142 ~~~~aCf~LS~m~~~g~-------~k----~~t~ap~~g~p~~~~~~~~~-------~kDMdka~qfa~kACel~~~~aC 203 (248)
T KOG4014|consen 142 EDGEACFLLSTMYMGGK-------EK----FKTNAPGEGKPLDRAELGSL-------SKDMDKALQFAIKACELDIPQAC 203 (248)
T ss_pred CCchHHHHHHHHHhccc-------hh----hcccCCCCCCCcchhhhhhh-------hHhHHHHHHHHHHHHhcCChHHH
Confidence 99999999999998662 11 11111 11223222233322 44677777777777777777777
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHh
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAAD 348 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~ 348 (525)
.++..+|..|.|+++ |.++|.++-.+|.+
T Consensus 204 AN~SrMyklGDGv~K-de~~Aekyk~rA~e 232 (248)
T KOG4014|consen 204 ANVSRMYKLGDGVPK-DEDQAEKYKDRAKE 232 (248)
T ss_pred hhHHHHHHccCCCCc-cHHHHHHHHHHHHH
Confidence 777777777777766 77777777666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-11 Score=103.23 Aligned_cols=189 Identities=19% Similarity=0.114 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSA 317 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 317 (525)
..+...||.-|+..+ |+..|...+++|++. .+..++.-++.+|.. .|+.+.|.+.|++|+... +.+.
T Consensus 35 a~arlqLal~YL~~g-----d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 35 AKARLQLALGYLQQG-----DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----LGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCccch
Confidence 467788999999885 999999999999976 567899999999999 999999999999998764 7889
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 391 (525)
+++.|..+-. +|.+++|..+|++|+.. ..+.++.|+|.|-.+ .++.+.|..+|+++++. +.+.+.
T Consensus 106 LNNYG~FLC~-----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 106 LNNYGAFLCA-----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred hhhhhHHHHh-----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHH
Confidence 9999988765 56999999999999876 357789999999999 99999999999999987 577888
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHH-HHHHH-HHHhcCCHHHHHHHHHHHHH
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSL-SRWAL-ESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~-~~l~~-~~~~~g~~~~A~~~~~~a~~ 452 (525)
..++..... .+++..|..++++-...+...+- ..||+ +-...||-..|-+|=.+...
T Consensus 177 l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 177 LELARLHYK----AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHh----cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888887 89999999999988877654432 23443 44556776666665544443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-11 Score=102.63 Aligned_cols=160 Identities=21% Similarity=0.144 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a 354 (525)
..+...||.-|+. .+|+..|..-+++|++.+ +..++..++.+|.. .|+.+.|.+.|++|+.. ++.+.
T Consensus 35 a~arlqLal~YL~----~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-----~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 35 AKARLQLALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-----LGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----cCChhhHHHHHHHHHhcCCCccch
Confidence 3567889999999 999999999999999875 78899999999987 67999999999999977 68999
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
++|.|+.+.. ++.+++|..+|++|+.. ..+.++-|+|.|... .++++.|.++|+++++.++ +.+..
T Consensus 106 LNNYG~FLC~----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 106 LNNYGAFLCA----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred hhhhhHHHHh----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHHH
Confidence 9999999999 99999999999999987 357889999999998 9999999999999999975 66778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
.++...+..|++..|..++++-...+.
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccc
Confidence 899999999999999999999887643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-10 Score=103.76 Aligned_cols=317 Identities=12% Similarity=0.041 Sum_probs=186.7
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--C
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--G 158 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 158 (525)
.+.+-.+.+|...+. .+.+..|+..|..|+ +|.+-.+.|..|..|.. .|.-+-|+.-+.+.++. +
T Consensus 36 advekhlElGk~lla-------~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 36 ADVEKHLELGKELLA-------RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPD 104 (504)
T ss_pred HHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCcc
Confidence 345556889988886 888999999999987 56788889999999998 77888899999998875 6
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchh--hhhHhhhccCCcHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE--NKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
...|...-|.+++.+|.++.|..-|+++++..+.+.... .....+.+....+. .....+...|+...++.+..+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 778999999999999999999999999987654321110 00000000011111 1111133455666666666665
Q ss_pred HHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 237 AQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 237 ~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
++. =++..+..-+.+|... +++.+||.-++.+.++ ++...++.+..+++. .+|.+.++.-.+.+++.
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~-----~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~----vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAE-----GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT----VGDAENSLKEIRECLKL 252 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhccccchHHHHHHHHHHHh----hhhHHHHHHHHHHHHcc
Confidence 444 3445555555666555 3666666666666554 555666666666666 66666666666666655
Q ss_pred C-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH--
Q 009801 313 Q-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK-- 389 (525)
Q Consensus 313 ~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~-- 389 (525)
+ +...++-. |.. .+...+.+.-.++++ . .+++.+++...++.++.....
T Consensus 253 dpdHK~Cf~~---YKk-----lkKv~K~les~e~~i----------------e----~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 253 DPDHKLCFPF---YKK-----LKKVVKSLESAEQAI----------------E----EKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred CcchhhHHHH---HHH-----HHHHHHHHHHHHHHH----------------h----hhhHHHHHHHHHHHHhcCCcccc
Confidence 3 11111100 000 001111111111111 1 345555555555555443221
Q ss_pred ----HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 390 ----AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 390 ----a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
....+..++.. .+++-+|+.-..++++.++ .+++...+.+|.....|+.|+.-|++|.+.+
T Consensus 305 ir~~~~r~~c~C~~~----d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYRE----DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeeheeeecccc----cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 12223444444 5666666666666666654 3455566666666666666666666666553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-10 Score=99.93 Aligned_cols=253 Identities=19% Similarity=0.179 Sum_probs=187.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC--
Q 009801 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG-- 240 (525)
Q Consensus 163 ~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 240 (525)
-+--|.-++-.++.++|++.|..+++.++..+ +....+|.++++.|..+.||.+.+...+.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~----------------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl 101 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETF----------------EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL 101 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhh----------------HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC
Confidence 34455566667888999999988887655543 235678888899999999998888876552
Q ss_pred ----CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC
Q 009801 241 ----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE--PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL 314 (525)
Q Consensus 241 ----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~ 314 (525)
...|.+.||.-|...| -++.|...|...++.+. ..|.-.|-.+|.. .+++++|++.-++....+.
T Consensus 102 T~~qr~lAl~qL~~Dym~aG-----l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 102 TFEQRLLALQQLGRDYMAAG-----LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGG 172 (389)
T ss_pred chHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCC
Confidence 2457888888888774 88889999888887543 4678888888888 8889999888888777652
Q ss_pred -------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 315 -------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 315 -------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+..++.|+..+.. ..+.++|+.++++|++. ....+-..+|.+... .+++++|++.++++++.
T Consensus 173 q~~~~eIAqfyCELAq~~~~-----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALA-----SSDVDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQ 243 (389)
T ss_pred ccchhHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHh
Confidence 3445556665554 45888888888888866 467788888888888 88888888888888887
Q ss_pred CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 386 GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 386 ~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+. +++...|..+|.. .++.++.+.++.++.+..+ ..+..-++.......-.+.|..++.+-+..
T Consensus 244 n~~yl~evl~~L~~~Y~~----lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQ----LGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 64 4677778888887 8888888888888887764 445555565555555566666665544443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-09 Score=100.97 Aligned_cols=341 Identities=14% Similarity=0.062 Sum_probs=222.5
Q ss_pred cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh-----
Q 009801 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF----- 194 (525)
Q Consensus 121 ~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~----- 194 (525)
+++.+-.+..+.+|.. .++.++|+...-.... .-.+.....++.++...++..++.-.|...+..-+--.
T Consensus 94 ~~~~e~~r~~aecy~~----~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ 169 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQ----IGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA 169 (564)
T ss_pred cccHHHHHHHHHHHHH----HccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence 4556667778888887 7777788777665543 34566777888888888777787777776654321100
Q ss_pred --hccCCCCCchhhh--------hcccchh-hhhHhhhccCCcHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCC
Q 009801 195 --LISKDSPVIEPIR--------IHNGAEE-NKGALRKSRGEDDEAFQILEYQ----AQKGNAGAMYKIGLFYYFGLRGL 259 (525)
Q Consensus 195 --~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~----~~~~~~~a~~~Lg~~y~~~~~~~ 259 (525)
.....+..+.+.+ .....+. .+.....-.++...|...+--+ .-+++..-+..+|.++...|
T Consensus 170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G--- 246 (564)
T KOG1174|consen 170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG--- 246 (564)
T ss_pred HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc---
Confidence 0000000000000 0000000 0111122223333333222221 11267777778888877774
Q ss_pred ccCHHHHHHHHHHHHhc--CCHHH----------------------------------HHHHHHHHHcCCCCCCCHHHHH
Q 009801 260 RRDRTKALMWFSKAADK--GEPQS----------------------------------MEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~--~~~~a----------------------------------~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
|+.+|+..|+++.-. .+..+ |+--+.+.+. .++++.|+
T Consensus 247 --dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~----~K~~~rAL 320 (564)
T KOG1174|consen 247 --DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD----EKKFERAL 320 (564)
T ss_pred --CchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh----hhhHHHHH
Confidence 778888888776432 11222 2222333333 56778888
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 304 EWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 304 ~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
.+-+++++.+ +.+++..-|.++.. .++.++|+-.|+.|.... +-+.+-.|-.+|.. .+.+.+|...-
T Consensus 321 ~~~eK~I~~~~r~~~alilKG~lL~~-----~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA----~~~~kEA~~~A 391 (564)
T KOG1174|consen 321 NFVEKCIDSEPRNHEALILKGRLLIA-----LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA----QKRFKEANALA 391 (564)
T ss_pred HHHHHHhccCcccchHHHhccHHHHh-----ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh----hchHHHHHHHH
Confidence 8888887764 67777778887765 457888888888887664 45566677777888 78888887776
Q ss_pred HHHHHc--CCHHHHHHHH-HHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 009801 380 LVAANA--GHQKAFYQLA-KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL- 453 (525)
Q Consensus 380 ~~a~~~--~~~~a~~~l~-~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~- 453 (525)
..+.+. .++.++.-+| .+... ...--++|..++++++.+.| ..|-..++.+....|.+++++..+++++..
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 666654 5666766665 33332 35667999999999999975 678889999999999999999999999876
Q ss_pred ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 454 ~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+...+..||.+... .+.+++|+.+|..|+..+
T Consensus 469 ~D~~LH~~Lgd~~~A----------------~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRA----------------QNEPQKAMEYYYKALRQD 501 (564)
T ss_pred cccHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHhcC
Confidence 677788999998876 778999999999999876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-10 Score=116.63 Aligned_cols=353 Identities=14% Similarity=0.014 Sum_probs=235.7
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.++.+.|+..|-++. ++..+.++-.||.+|.. --|...|.+.|.+|-+. ++.++--..+..|....+.+.|.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd----~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRD----SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHH
Confidence 567899999999987 45668999999999998 56999999999999765 57788889999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRG 258 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~ 258 (525)
...-++.+..+..... ..+...|..+...++.-.|+..++.+ ++|.+..++..||.+|...|
T Consensus 547 ~I~l~~~qka~a~~~k--------------~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG-- 610 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACK--------------ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG-- 610 (1238)
T ss_pred HHHHHHhhhchHHHHH--------------hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC--
Confidence 9966666554432211 22334777788899999999999998 45689999999999998884
Q ss_pred CccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHh
Q 009801 259 LRRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---------QLYSAYNGIGYLYVK 327 (525)
Q Consensus 259 ~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~ 327 (525)
.+..|++.|.+|...+ +..+.+..+.+-.. .|.+.+|+..+...+.. |.++++..++..+..
T Consensus 611 ---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd----~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~ 683 (1238)
T KOG1127|consen 611 ---RYSHALKVFTKASLLRPLSKYGRFKEAVMECD----NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI 683 (1238)
T ss_pred ---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999998764 45677778888777 88999999998887643 344444444444432
Q ss_pred -CC-CCCccCHHHHHHHHHHHHhCC---ChhHHHHHH-------------------HHHHc---CCCCcCCHH---HHHH
Q 009801 328 -GY-GVEKKNYTKAKEYFEKAADNE---EAGGHYNLG-------------------VMYYK---GIGVKRDVK---LACK 377 (525)
Q Consensus 328 -g~-~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg-------------------~~y~~---g~~~~~~~~---~A~~ 377 (525)
|. +....-.+++++.|.-++... +...+..+| .++.. +.+..++.+ -+.+
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~ 763 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYE 763 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHH
Confidence 11 011112333444443333221 111111111 11111 111122222 2344
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHc-----CCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009801 378 YFLVAANA-GHQKAFYQLAKMFHT-----GVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSR 449 (525)
Q Consensus 378 ~~~~a~~~-~~~~a~~~l~~~y~~-----g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~ 449 (525)
++-..+.. .++..+++||..|.. |. ...+-..|+.++++++... +..-+..||.+ -..|++.-|..+|-+
T Consensus 764 c~~~hlsl~~~~~~WyNLGinylr~f~~l~e-t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIk 841 (1238)
T KOG1127|consen 764 CGIAHLSLAIHMYPWYNLGINYLRYFLLLGE-TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIK 841 (1238)
T ss_pred HhhHHHHHhhccchHHHHhHHHHHHHHHcCC-cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhh
Confidence 44444443 456677777766543 22 2344468888888888764 45566667765 555788888888887
Q ss_pred HHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 450 MAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 450 a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+... -..-++.|+|.++.+ .+|++-|...|.++....
T Consensus 842 s~~sep~~~~~W~NlgvL~l~----------------n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 842 SRFSEPTCHCQWLNLGVLVLE----------------NQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred hhhccccchhheeccceeEEe----------------cccHHHhhHHHHhhhhcC
Confidence 7655 345567777777655 667777777777665554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-09 Score=95.64 Aligned_cols=302 Identities=17% Similarity=0.107 Sum_probs=183.1
Q ss_pred CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCC
Q 009801 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD 199 (525)
Q Consensus 122 ~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~ 199 (525)
.+.+-++.||.-..- .+.+..|+..|..|++. ++..+++.-|..|+..|+-.-|+.-+.+++++.|...
T Consensus 36 advekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~----- 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM----- 106 (504)
T ss_pred HHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-----
Confidence 445567788887666 78999999999999985 4788999999999999999999999999988644432
Q ss_pred CCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 009801 200 SPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG-----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274 (525)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~ 274 (525)
+.....+.+...+|.++.|+.-|.+.++.+ ..+++..|+.+-...
T Consensus 107 -----------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~------------------- 156 (504)
T KOG0624|consen 107 -----------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW------------------- 156 (504)
T ss_pred -----------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH-------------------
Confidence 224456667777777777777777765542 223333333321111
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--C
Q 009801 275 DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E 350 (525)
Q Consensus 275 ~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~ 350 (525)
.+.....-+.. .||...|+.+..+.++.. +++.+..-+.+|.. .+++.+|+.-++.+... +
T Consensus 157 ------~l~~ql~s~~~----~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~-----~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 157 ------VLVQQLKSASG----SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA-----EGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred ------HHHHHHHHHhc----CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcccc
Confidence 00000001111 344444444444444443 23333333444432 23444455444444332 3
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHH-------------HHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKA-------------FYQLAKMFHTGVGLKKNLHMATALY 415 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a-------------~~~l~~~y~~g~g~~~~~~~A~~~~ 415 (525)
+.++++.++.+++. .++.+.++.-.+..+..+ +... +-..-..- . .+++.++++-.
T Consensus 222 nTe~~ykis~L~Y~----vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i-e----~~~~t~cle~g 292 (504)
T KOG0624|consen 222 NTEGHYKISQLLYT----VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI-E----EKHWTECLEAG 292 (504)
T ss_pred chHHHHHHHHHHHh----hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH-h----hhhHHHHHHHH
Confidence 44444444444444 444444444444444331 1110 11111111 1 57888888888
Q ss_pred HHHHHcCChHHH------HHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHh
Q 009801 416 KLVAERGPWSSL------SRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAER 487 (525)
Q Consensus 416 ~~a~~~~~~~a~------~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 487 (525)
++.++.+|.... -.+...+-..|++-+|+....++++.. +..++..-|..|.- .+.
T Consensus 293 e~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~----------------dE~ 356 (504)
T KOG0624|consen 293 EKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG----------------DEM 356 (504)
T ss_pred HHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh----------------hHH
Confidence 888888765332 234555667889999999999999884 45677777777644 778
Q ss_pred HHHHHHHHHHHHhCC
Q 009801 488 HQCAHSLWWQASEQG 502 (525)
Q Consensus 488 ~~~A~~~~~~a~~~~ 502 (525)
|+.||.-|++|.+.+
T Consensus 357 YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 357 YDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999876
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-08 Score=101.64 Aligned_cols=356 Identities=14% Similarity=0.066 Sum_probs=252.4
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----CCHHHHHHHHH-HHhccccHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GNIQSKMAVAY-TYLRQDMHD 177 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~la~-~y~~~~~~~ 177 (525)
-+++..+.+.|+++. -.+..+-++.++..|.. -+...+|+...+..... .++..+...+. ++.+.+.++
T Consensus 336 ~g~f~~lae~fE~~~~~~~~~~e~w~~~als~sa----ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSA----AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH----hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 577899999999965 34667888888888887 67789999999988653 45666655554 455689999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh-----hccCCcHHHHHHHHHHHH--cCCHHHHHHHHH
Q 009801 178 KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR-----KSRGEDDEAFQILEYQAQ--KGNAGAMYKIGL 250 (525)
Q Consensus 178 ~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~ 250 (525)
+++++-.+++........ .+.....+..++........ .+.-...++++.++++++ +.||.+.+.++.
T Consensus 412 egldYA~kai~~~~~~~~-----~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal 486 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRS-----HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL 486 (799)
T ss_pred hHHHHHHHHHHHhhhhhh-----hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 999999999984311100 00000111111111100000 112234578888888754 589999999999
Q ss_pred HHHhcCCCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC------------
Q 009801 251 FYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QL------------ 314 (525)
Q Consensus 251 ~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~------------ 314 (525)
-|... ++.+.|..+.+++++. +++.+|..|+.++.. .+++..|+....-+++. ++
T Consensus 487 q~A~~-----R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 487 QYAEQ-----RQLTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHH-----HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 99777 5999999999999987 578999999999998 99999999999988753 11
Q ss_pred -----HH-----HHHHHHHHH-----------------HhCCCCCccCHHHHHHHHHHHHhC--------C---------
Q 009801 315 -----YS-----AYNGIGYLY-----------------VKGYGVEKKNYTKAKEYFEKAADN--------E--------- 350 (525)
Q Consensus 315 -----~~-----a~~~lg~~~-----------------~~g~~~~~~~~~~A~~~~~~a~~~--------~--------- 350 (525)
++ +...|+.+- ..|.+....+..+|++..+++... +
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 11 111111111 011222333555555555554311 1
Q ss_pred ----Ch-------hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 351 ----EA-------GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 351 ----~~-------~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.. ..+...+..+.. .++.++|...+..+... -.+..++..|.++.. .+..++|.+.|..
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLL----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAKEAFLV 709 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHHHHHHH
Confidence 11 123456777777 78888888888887766 356777888999987 9999999999999
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHH
Q 009801 418 VAERGP--WSSLSRWALESYLKGDVGKAFL--LYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCA 491 (525)
Q Consensus 418 a~~~~~--~~a~~~l~~~~~~~g~~~~A~~--~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A 491 (525)
|+..+| +.+...+|.++.+.|+..-|.. .+..|++.+ ++.+|+.+|.+... .|+.+.|
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~----------------~Gd~~~A 773 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK----------------LGDSKQA 773 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------------ccchHHH
Confidence 999875 7788899999999998777777 899998874 89999999999998 6677899
Q ss_pred HHHHHHHHhCC
Q 009801 492 HSLWWQASEQG 502 (525)
Q Consensus 492 ~~~~~~a~~~~ 502 (525)
..+|.-|++..
T Consensus 774 aecf~aa~qLe 784 (799)
T KOG4162|consen 774 AECFQAALQLE 784 (799)
T ss_pred HHHHHHHHhhc
Confidence 99999998865
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-08 Score=95.81 Aligned_cols=305 Identities=13% Similarity=0.043 Sum_probs=209.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc--C
Q 009801 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--G 240 (525)
Q Consensus 163 ~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~ 240 (525)
+..-+..+...+-++-|...|..+++..+.. .-.+.....+...-|..++-..++++++.. .
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k----------------~slWlra~~~ek~hgt~Esl~Allqkav~~~pk 582 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCK----------------KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK 582 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccch----------------hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc
Confidence 3334444555555666666666665543221 111223333444556777777888888765 4
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QLYSA 317 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a 317 (525)
.+..+...+..++.. +|...|...+.+|.+. ++...++.--.+-.. ...++.|..+|.++-.. +....
T Consensus 583 ae~lwlM~ake~w~a-----gdv~~ar~il~~af~~~pnseeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv 653 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKA-----GDVPAARVILDQAFEANPNSEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERV 653 (913)
T ss_pred chhHHHHHHHHHHhc-----CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchh
Confidence 555566666666666 4888888888888875 334444444444444 66788899998888654 35555
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ 393 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 393 (525)
+..-+.+... .++.++|+.+++++++. .....+..+|.++.+ .++.+.|...|...++. +...-+..
T Consensus 654 ~mKs~~~er~-----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 654 WMKSANLERY-----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred hHHHhHHHHH-----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccCCCCchHHHH
Confidence 5555555443 45888999999888887 567788889999998 88999999888888776 56677777
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHH-------------------
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALE--SYLKGDVGKAFLLYSRMAE------------------- 452 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~--~~~~g~~~~A~~~~~~a~~------------------- 452 (525)
|+.+-+. .++..+|...+.++.-.+|.++.+.|..+ -.+.|+.+.|.....+|++
T Consensus 725 LakleEk----~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 725 LAKLEEK----DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHH----hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 7777776 77888888888888888876666666554 4467788888877777742
Q ss_pred -------------cChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcc
Q 009801 453 -------------LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYG 517 (525)
Q Consensus 453 -------------~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g 517 (525)
.+++.++..+|.+... ...+++|..||.+|+..+ ++|++..+=..+. -
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~----------------e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel-~ 863 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWS----------------EKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL-R 863 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHH----------------HHHHHHHHHHHHHHHccCCccchHHHHHHHHHH-H
Confidence 1466777777777766 778999999999999865 6777766554444 5
Q ss_pred cccCC
Q 009801 518 RVRHS 522 (525)
Q Consensus 518 ~g~~~ 522 (525)
.|+++
T Consensus 864 hG~ee 868 (913)
T KOG0495|consen 864 HGTEE 868 (913)
T ss_pred hCCHH
Confidence 55544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-08 Score=100.01 Aligned_cols=298 Identities=12% Similarity=-0.024 Sum_probs=170.6
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-----GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~ 194 (525)
+|+.+.++..+|.+|.. .++.+.|...+.++... +..+.....+.++...+++++|+..++++++..
T Consensus 2 dp~~~~a~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLL----GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY---- 73 (355)
T ss_pred CCccHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 56677777777777766 45666666666665432 234555666777777777777777777765532
Q ss_pred hccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 009801 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274 (525)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~ 274 (525)
|+++.++.. +..+...+ ...+....+.+.+....
T Consensus 74 --------------------------------------------P~~~~a~~~-~~~~~~~~-~~~~~~~~~~~~l~~~~ 107 (355)
T cd05804 74 --------------------------------------------PRDLLALKL-HLGAFGLG-DFSGMRDHVARVLPLWA 107 (355)
T ss_pred --------------------------------------------CCcHHHHHH-hHHHHHhc-ccccCchhHHHHHhccC
Confidence 233333332 22222221 11123333433333311
Q ss_pred hc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC
Q 009801 275 DK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE 350 (525)
Q Consensus 275 ~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~ 350 (525)
.. +...+...+|.++.. .|++++|+..++++++.. ++.++..+|.++.. .+++++|+.+++++++..
T Consensus 108 ~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-----~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-----QGRFKEGIAFMESWRDTW 178 (355)
T ss_pred cCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-----cCCHHHHHHHHHhhhhcc
Confidence 11 334555667777777 778888888888887654 56677777877765 457888888888877653
Q ss_pred C--h----hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-HHHHH---HHHHHHHcCCCCcCCHHHHHHH--H-HH
Q 009801 351 E--A----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-QKAFY---QLAKMFHTGVGLKKNLHMATAL--Y-KL 417 (525)
Q Consensus 351 ~--~----~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~---~l~~~y~~g~g~~~~~~~A~~~--~-~~ 417 (525)
. + ..+..+|.++.. .+++++|+..|+++..... ..... ..+..+..+. ..+....+..| . ..
T Consensus 179 ~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~w~~~~~~ 253 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLE----RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE-LAGHVDVGDRWEDLADY 253 (355)
T ss_pred CCCcchhHHHHHHHHHHHHH----CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH-hcCCCChHHHHHHHHHH
Confidence 1 2 234567888888 8888888888888764322 11111 1111111100 02222222222 1 11
Q ss_pred HHHcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C----hHHHHHHHHHHHhhhCCCccccCCCCCC
Q 009801 418 VAERG----PWSSLSRWALESYLKGDVGKAFLLYSRMAEL-------G----YEVAQSNAAWILDKYGEGSMCMGESGFC 482 (525)
Q Consensus 418 a~~~~----~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~----~~~a~~~la~~~~~~~~~~~~~~~~~~~ 482 (525)
..... ........+.++...|+.++|...++..... + ........|.++..
T Consensus 254 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~-------------- 319 (355)
T cd05804 254 AAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA-------------- 319 (355)
T ss_pred HHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH--------------
Confidence 11110 1122236777888899999999998876542 1 13344556666666
Q ss_pred CChHhHHHHHHHHHHHHhC
Q 009801 483 TDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~ 501 (525)
.+++++|+..+..++..
T Consensus 320 --~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 --EGNYATALELLGPVRDD 336 (355)
T ss_pred --cCCHHHHHHHHHHHHHH
Confidence 77899999999988753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.3e-09 Score=104.33 Aligned_cols=321 Identities=15% Similarity=0.080 Sum_probs=193.4
Q ss_pred CCcccHHHHHHHHHHHhhcCC----hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 84 AINGSYYITISKMMSAVTNGD----VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~----~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
.+.++..+|..|-..+..... .....+++..+++++ ++.|+.+.|.++..|.. .++.+.|+.+.++++..
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAE----QRQLTSALDYAREALAL 507 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----HHhHHHHHHHHHHHHHh
Confidence 477888899888766544432 123678888899975 77899999999999998 99999999999999876
Q ss_pred ---CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHH
Q 009801 158 ---GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234 (525)
Q Consensus 158 ---~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 234 (525)
.++.++..|+.+....+++..|+..-..+++.-+.+... ...+..+....++..+|+....
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l----------------~~~~~~i~~~~~~~e~~l~t~~ 571 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL----------------MDGKIHIELTFNDREEALDTCI 571 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh----------------chhhhhhhhhcccHHHHHHHHH
Confidence 478999999999999999999999999888775554322 2223344445667777776655
Q ss_pred HHHHc--CCHHHHHHHHHHHHh---c-CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 235 YQAQK--GNAGAMYKIGLFYYF---G-LRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 235 ~~~~~--~~~~a~~~Lg~~y~~---~-~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
..... ..+.+...++..-.. . +.-...+...|+...+++... +-.++. .-..+.. +.+
T Consensus 572 ~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-----------~a~~~~--~~~se~~---Lp~ 635 (799)
T KOG4162|consen 572 HKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-----------VASQLK--SAGSELK---LPS 635 (799)
T ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-----------HHhhhh--hcccccc---cCc
Confidence 53322 111122222211100 0 001122445555555544321 000000 0000000 000
Q ss_pred HH-HcCC-------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 309 AA-RQQL-------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 309 a~-~~~~-------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
.- ..+. ...+...+..+.. .++.++|..++.++.... .+..++..|.++.. .+...+|...
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~-----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~~a 706 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLL-----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAKEA 706 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHHHH
Confidence 00 0000 1222333444433 235666666666665543 45566677777777 7777777777
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHH--HHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 379 FLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATA--LYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 379 ~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~--~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
|..|+.. +++.++..+|.++.. .|+..-|.. .+..+++.++ .++|+.+|.++...|+.+.|..+|+-|++
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle----~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLE----LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHH----hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7766544 567777777777765 334444444 7777777763 66777777777777777777777777766
Q ss_pred c
Q 009801 453 L 453 (525)
Q Consensus 453 ~ 453 (525)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 5
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-08 Score=97.31 Aligned_cols=367 Identities=16% Similarity=0.057 Sum_probs=232.6
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+|+++|+.+|..++ +|+|.--+.+-...|.. .+++.+|++--.+..+. .-+.++..+|..+...|+|++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~----~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS----LGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHH----HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 788999999999976 66666556666667777 88999999988888775 46789999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCch-----hhhhcccch-------hhhhHhhhccCCcHHHHHHHHHH-----HHcCCHH
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIE-----PIRIHNGAE-------ENKGALRKSRGEDDEAFQILEYQ-----AQKGNAG 243 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~A~~~~~~~-----~~~~~~~ 243 (525)
..|.+-++.++.+...-.+..-.. .......+. ..+.........+.+-++.+++. ...+++.
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999999888766532211100000 000000000 00111111222222222222221 1113444
Q ss_pred HHHHHHHHHHhcC-----CCC-----ccCHH----HHHHHH----HHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 009801 244 AMYKIGLFYYFGL-----RGL-----RRDRT----KALMWF----SKAADKGEPQSMEFLGEIYARGAGVERNYTKALEW 305 (525)
Q Consensus 244 a~~~Lg~~y~~~~-----~~~-----~~~~~----~A~~~~----~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~ 305 (525)
.+..+|.+.-... .+. ..++. +..... +..-...-+...-.||..... ..++..|++.
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk----kk~f~~a~q~ 246 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK----KKDFETAIQH 246 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH----hhhHHHHHHH
Confidence 4555554432110 000 00000 000000 000000112345678888887 8899999999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 306 LTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---------AGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 306 ~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---------~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
|.++++.. +..-..+.+.+|+. .+.+.+.+.....+++.+- +.+...+|..|.. .++++.|
T Consensus 247 y~~a~el~~~it~~~n~aA~~~e-----~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k----~~~~~~a 317 (539)
T KOG0548|consen 247 YAKALELATDITYLNNIAAVYLE-----RGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK----REDYEGA 317 (539)
T ss_pred HHHHHhHhhhhHHHHHHHHHHHh-----ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh----HHhHHHH
Confidence 99998876 44556777778865 5678888888888877641 3344456777777 8999999
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 376 CKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 376 ~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
+.+|++++.. ..++ +... .+..++++.-.......++.- ....-|..++..|+|.+|+..|.+|+.
T Consensus 318 i~~~~kaLte~Rt~~-------~ls~----lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPD-------LLSK----LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHhhhhcCHH-------HHHH----HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 9999998765 3322 2222 455666666666666666533 333558899999999999999999998
Q ss_pred c--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 453 L--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 453 ~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
. .++..+.|.|.+|-. .+.+..|+.--+++++.+ ...++++=|.+++
T Consensus 387 r~P~Da~lYsNRAac~~k----------------L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLK----------------LGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred cCCchhHHHHHHHHHHHH----------------HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 7 588899999999988 556788888888888876 3556666555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-08 Score=95.43 Aligned_cols=354 Identities=14% Similarity=0.073 Sum_probs=222.1
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~- 156 (525)
..+.+++++-..|....- .++.++|..+...+. ++...-+|+.+|.++.. .+++++|+++|+.|+.
T Consensus 36 k~~eHgeslAmkGL~L~~-------lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~----dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNC-------LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS----DKKYDEAIKCYRNALKI 104 (700)
T ss_pred hCCccchhHHhccchhhc-------ccchHHHHHHHHHHhccCcccchhHHHHHHHHhh----hhhHHHHHHHHHHHHhc
Confidence 456778888888886654 788999999998865 66788999999999999 9999999999999976
Q ss_pred -CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 157 -~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.+|...+..|+.+-.++++++-....=.+..+..+..- ..+...+..+.-.|++..|.+.++.
T Consensus 105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r----------------a~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR----------------ASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999988887777766554431 1134455556667788888777666
Q ss_pred HHHcCC----------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 009801 236 QAQKGN----------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 236 ~~~~~~----------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
.....+ .++...-..+.... +.+++|++.+.+--.. +.-.....-|.++.. .++.++|.
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~-----g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k----l~~lEeA~ 239 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEA-----GSLQKALEHLLDNEKQIVDKLAFEETKADLLMK----LGQLEEAV 239 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH----HhhHHhHH
Confidence 533321 22223333333333 2456666665543221 222333445667777 77888888
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHH-----------------------------------HHHHHH
Q 009801 304 EWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAK-----------------------------------EYFEKA 346 (525)
Q Consensus 304 ~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~-----------------------------------~~~~~a 346 (525)
..|...+... +..-+..+-.++.. .. +.-+++ +++..-
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk----~~-d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGK----IK-DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHH----Hh-hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 8888877664 22111111111110 01 222222 233333
Q ss_pred HhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH-------Hc------------CCHHH----HHHHHHHHHcCCC
Q 009801 347 ADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA-------NA------------GHQKA----FYQLAKMFHTGVG 403 (525)
Q Consensus 347 ~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~-------~~------------~~~~a----~~~l~~~y~~g~g 403 (525)
++.|.|.....+-.+|.. .. +.- +.++.+ .. ..|.+ .+.++.-+..
T Consensus 315 l~Kg~p~vf~dl~SLyk~----p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~--- 383 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSLYKD----PE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK--- 383 (700)
T ss_pred hhcCCCchhhhhHHHHhc----hh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH---
Confidence 334445555555555544 22 111 333322 10 12333 3344445554
Q ss_pred CcCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHH--HHHHHhhhCCCccccCCC
Q 009801 404 LKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN--AAWILDKYGEGSMCMGES 479 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~--la~~~~~~~~~~~~~~~~ 479 (525)
.++++.|..|...|++.-|. +-+..-|.++...|+.++|..|++.|.+.+.++-..| .|....+
T Consensus 384 -~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr----------- 451 (700)
T KOG1156|consen 384 -LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR----------- 451 (700)
T ss_pred -cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH-----------
Confidence 88999999999999988774 4455678889999999999999999999987775555 5544443
Q ss_pred CCCCChHhHHHHHHHHHHHHhCC
Q 009801 480 GFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.++.++|.+...+-.+.|
T Consensus 452 -----An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 -----ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred -----ccccHHHHHHHHHhhhcc
Confidence 445566666555544443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-08 Score=93.30 Aligned_cols=261 Identities=13% Similarity=0.070 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH
Q 009801 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 157 ~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
.+|..-+..+|.++...|++++|+..|+++.-.++..... ..-.+.+....|+++.--.+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~----------------MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA----------------MDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh----------------HHHHHHHHHhccCHhhHHHHHHHH
Confidence 3788999999999999999999999999987665543221 223455666777776544443333
Q ss_pred --HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 237 --AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 237 --~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
+......-++.-|...+.. +++..|+.+-+|+++. .+..++..-|.++.. .++.++|+-.|+.|...
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~-----K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDE-----KKFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQML 363 (564)
T ss_pred Hhhhhcchhhhhhhhhhhhhh-----hhHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHHhc
Confidence 3333444455555555444 5999999999999986 577899999999999 99999999999999776
Q ss_pred C--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH-HHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 313 Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG-VMYYKGIGVKRDVKLACKYFLVAANA-- 385 (525)
Q Consensus 313 ~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg-~~y~~g~~~~~~~~~A~~~~~~a~~~-- 385 (525)
- ..+++..|-.+|.. .+.+.+|.-.-+.+++. .++.++..+| .+.... ..-.++|..++++++..
T Consensus 364 ap~rL~~Y~GL~hsYLA-----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d---p~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLA-----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD---PRMREKAKKFAEKSLKINP 435 (564)
T ss_pred chhhHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC---chhHHHHHHHHHhhhccCC
Confidence 4 67888888888876 55899999988888765 6788888886 554431 66788999999999987
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-PWSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+...|-..++.+... .+.++.++..+++.+... +..-+..||.++...+.+++|+.+|..|+..+
T Consensus 436 ~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQV----EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHh----hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 678888889988886 899999999999998876 46677899999999999999999999999885
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-09 Score=107.89 Aligned_cols=357 Identities=14% Similarity=0.009 Sum_probs=258.0
Q ss_pred CCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCH
Q 009801 69 PGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNK 144 (525)
Q Consensus 69 ~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~ 144 (525)
-..+...|-++ +++.-+.+.-.+|.+|-. ..|...|...|++|- +++++++.-.++..|.+ ..+.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd-------~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae----~~~w 542 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRD-------SDDMKRAKKCFDKAFELDATDAEAAAASADTYAE----ESTW 542 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc----cccH
Confidence 44566666666 455556677788887775 558999999999975 77888999999999998 8899
Q ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 145 GKAFLYHHFAAEGG----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 145 ~~A~~~~~~a~~~~----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
+.|......+.+.. -......+|..|...++..+|+..|+.+...+|.+.. .+..+|..|
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n----------------~W~gLGeAY 606 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN----------------LWLGLGEAY 606 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHH----------------HHHHHHHHH
Confidence 99998876666543 2344556999999999999999999999888777643 377899999
Q ss_pred hccCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---------CCHHHHHHHHHHH
Q 009801 221 KSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---------GEPQSMEFLGEIY 289 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y 289 (525)
...|++..|++.|.++. +|.+.-+.|..+.+-... +.|++|+..+...+.. |.+.++.+++..+
T Consensus 607 ~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~-----GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~ 681 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN-----GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDS 681 (1238)
T ss_pred HhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999998874 456677788888888777 4999999999887643 4566666666665
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHc-------C---CHHHHHH--------------------HHHHHH--hCCCCCccCH-
Q 009801 290 ARGAGVERNYTKALEWLTHAARQ-------Q---LYSAYNG--------------------IGYLYV--KGYGVEKKNY- 336 (525)
Q Consensus 290 ~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~--------------------lg~~~~--~g~~~~~~~~- 336 (525)
.. .+-..+|..+++++++. . +...+.. ++.+.. .+.+..+.+-
T Consensus 682 ~~----~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 682 AI----TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred HH----HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhH
Confidence 54 55555566666655432 1 1111111 111111 1222222121
Q ss_pred -HHHHHHHHHHHhC-CChhHHHHHHHHHHcCC----CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCH
Q 009801 337 -TKAKEYFEKAADN-EEAGGHYNLGVMYYKGI----GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNL 408 (525)
Q Consensus 337 -~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~----~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~ 408 (525)
--|.+++-..+.. .++..|++||.-|.+-. .++.+...|+..++++++. ++..-++.||.+ . ..+++
T Consensus 758 l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl--s---g~gnv 832 (1238)
T KOG1127|consen 758 LFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL--S---GIGNV 832 (1238)
T ss_pred HHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh--h---ccchh
Confidence 2344444444443 46888999999887731 2356667999999999987 677788888888 3 26899
Q ss_pred HHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Q 009801 409 HMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWIL 466 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~ 466 (525)
.-|..+|-++....| ...+.++|.++....|++-|-..+.++.........-++|..+
T Consensus 833 a~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 833 ACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred hhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHH
Confidence 999999999988875 5678899999999999999999999998876666666666555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=101.00 Aligned_cols=177 Identities=15% Similarity=0.064 Sum_probs=124.6
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCCh---HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDP---HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~---~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
..++.++.+|..++. .+++++|+..+++.. .|.++ .+++.+|.+|.. .+++++|+..|+++++.
T Consensus 31 ~~~~~~~~~g~~~~~-------~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 31 WPAEELYEEAKEALD-------SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRL 99 (235)
T ss_pred CCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence 447788999999887 888999999999965 44554 678999999999 99999999999999864
Q ss_pred --CCH---HHHHHHHHHHhcc--------ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccC
Q 009801 158 --GNI---QSKMAVAYTYLRQ--------DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG 224 (525)
Q Consensus 158 --~~~---~a~~~la~~y~~~--------~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (525)
+++ .+++.+|.++... +++++|++.|++++...+.+...
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---------------------------- 151 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA---------------------------- 151 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH----------------------------
Confidence 333 4789999999875 78999999999988764443100
Q ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcCCCCCCCH
Q 009801 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
.+++..+.. ...........+|.+|...+ ++.+|+..|+++++.. .+.+++.+|.++.. .+++
T Consensus 152 --~~a~~~~~~-~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~----lg~~ 219 (235)
T TIGR03302 152 --PDAKKRMDY-LRNRLAGKELYVARFYLKRG-----AYVAAINRFETVVENYPDTPATEEALARLVEAYLK----LGLK 219 (235)
T ss_pred --HHHHHHHHH-HHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH----cCCH
Confidence 111111111 01111223456777776663 7777888777777641 24677777777777 7777
Q ss_pred HHHHHHHHHHH
Q 009801 300 TKALEWLTHAA 310 (525)
Q Consensus 300 ~~A~~~~~~a~ 310 (525)
++|+.+++...
T Consensus 220 ~~A~~~~~~l~ 230 (235)
T TIGR03302 220 DLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-08 Score=91.35 Aligned_cols=287 Identities=14% Similarity=0.032 Sum_probs=189.3
Q ss_pred HHHHHHHHhhcCChHhHHHHHHHHHHHHhcC-ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-C--CHHHHHHHH
Q 009801 92 TISKMMSAVTNGDVRVMEEATSEVESAAMEG-DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-G--NIQSKMAVA 167 (525)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~--~~~a~~~la 167 (525)
+..++..+..+-..||+.+|.+...++++-+ .+...+.+|---... .+|.+.|-.|+.++++. + ........+
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~q---rgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQ---RGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHh---cccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 3344444444445899999999999977554 465556666533321 78999999999999987 3 457778889
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc---CCHHH
Q 009801 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK---GNAGA 244 (525)
Q Consensus 168 ~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~a 244 (525)
.+....+|++.|..-..++.+..+.... ...-...+|...|++++...++.+..+. +++++
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~----------------vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPE----------------VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChH----------------HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 9999999999999999888876554321 1233556677888888888888776655 23332
Q ss_pred HHHHHHHH-----HhcCCCCccCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHH
Q 009801 245 MYKIGLFY-----YFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYS 316 (525)
Q Consensus 245 ~~~Lg~~y-----~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~ 316 (525)
.-.=-..+ ... ..++.+.=..|.+..-. ..++.....++.-+.. .++.++|.++.+++++.+ ++.
T Consensus 225 ~~le~~a~~glL~q~~---~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 225 ARLEQQAWEGLLQQAR---DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHHHHHHHh---ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh
Confidence 21111111 111 00111112234443222 1456666667777777 788888888888888775 555
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQ 393 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~ 393 (525)
.+..++.+- .+++.+=++..++.+.. ++|..+..||.++.. .+.+.+|..+++.|+.. .+...+..
T Consensus 298 L~~~~~~l~-------~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~~~w~kA~~~leaAl~~~~s~~~~~~ 366 (400)
T COG3071 298 LCRLIPRLR-------PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----NKLWGKASEALEAALKLRPSASDYAE 366 (400)
T ss_pred HHHHHhhcC-------CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----hhHHHHHHHHHHHHHhcCCChhhHHH
Confidence 333333322 33666666666666654 567777888888888 88888888888888776 56677778
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
+|..+.. .++..+|...++.++
T Consensus 367 la~~~~~----~g~~~~A~~~r~e~L 388 (400)
T COG3071 367 LADALDQ----LGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHH----cCChHHHHHHHHHHH
Confidence 8888887 788888888887776
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-08 Score=96.55 Aligned_cols=298 Identities=9% Similarity=0.042 Sum_probs=179.8
Q ss_pred CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hc---CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHH
Q 009801 81 DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--ME---GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA 155 (525)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~---~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~ 155 (525)
+|+.+.++..+|..+.. .++.+.|...+.++. .+ +..+..+..|.++.. .+++++|...+++++
T Consensus 2 dp~~~~a~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~----~g~~~~A~~~~~~~l 70 (355)
T cd05804 2 DPDFALGHAAAALLLLL-------GGERPAAAAKAAAAAQALAARATERERAHVEALSAWI----AGDLPKALALLEQLL 70 (355)
T ss_pred CCccHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 67778888899987776 445666666665532 22 335667777888877 899999999999998
Q ss_pred cC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHH
Q 009801 156 EG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQIL 233 (525)
Q Consensus 156 ~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 233 (525)
+. ++..+... +..+...+++..+.....+++...
T Consensus 71 ~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------------- 106 (355)
T cd05804 71 DDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW------------------------------------------- 106 (355)
T ss_pred HHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-------------------------------------------
Confidence 64 45555553 444444444433333333322110
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 234 EYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 234 ~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
....+....+...+|.++...| ++++|+..++++++. +++.++..+|.++.. .+++++|+.+++++++
T Consensus 107 -~~~~~~~~~~~~~~a~~~~~~G-----~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 107 -APENPDYWYLLGMLAFGLEEAG-----QYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRD 176 (355)
T ss_pred -CcCCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhh
Confidence 0012344556667777777663 888888888888765 556777788888887 8888888888888876
Q ss_pred cC----C--HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC-hhHHH---HHHHHHHcCCCCcCCHHHHHHH--H
Q 009801 312 QQ----L--YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-AGGHY---NLGVMYYKGIGVKRDVKLACKY--F 379 (525)
Q Consensus 312 ~~----~--~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~-~~a~~---~lg~~y~~g~~~~~~~~~A~~~--~ 379 (525)
.. . ...+..++.++.. .|++++|+.+|++++.... +.... ..+..+..+.- .+....+..| .
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~-----~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~~~~w~~~ 250 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLE-----RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL-AGHVDVGDRWEDL 250 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHH-----CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh-cCCCChHHHHHHH
Confidence 52 1 1234567777765 5688888888888764422 11111 11111111100 2222222222 1
Q ss_pred -HHHHH--cCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCHHHH
Q 009801 380 -LVAAN--AGH--QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----------PWSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 380 -~~a~~--~~~--~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~l~~~~~~~g~~~~A 443 (525)
..... .+. .......+.++.. .++.++|...++...... ........+++++..|++++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAG----AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 11111 111 1111234444444 678888888887765421 133445678889999999999
Q ss_pred HHHHHHHHHc
Q 009801 444 FLLYSRMAEL 453 (525)
Q Consensus 444 ~~~~~~a~~~ 453 (525)
+..+..++..
T Consensus 327 ~~~L~~al~~ 336 (355)
T cd05804 327 LELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHH
Confidence 9999999865
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-08 Score=94.33 Aligned_cols=203 Identities=13% Similarity=0.032 Sum_probs=159.1
Q ss_pred ccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC
Q 009801 222 SRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER 297 (525)
Q Consensus 222 ~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~ 297 (525)
..++.++|+..+.+++. |.+..++...|.++...+ .++++++.++.+++.. .+..++.+.+.++.. .+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~----~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~----l~ 120 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD----ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK----LG 120 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc----hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH----cC
Confidence 45678899999999865 478889999999987663 3689999999999875 677899999988876 55
Q ss_pred C--HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcC---CCC
Q 009801 298 N--YTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKG---IGV 368 (525)
Q Consensus 298 ~--~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g---~~~ 368 (525)
+ .++++.+++++++.+ +..++...+.++.. .+++++++.++.++++. .+..+++..+.+.... .+.
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-----l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-----LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 4 377899999998875 88999999999986 45899999999999876 5888999999888662 111
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLK 437 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~ 437 (525)
....++++.+..+++.. .+..++++++.++........+..+|+..+.+++..+ ...++..|+.++...
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 22346788888898876 6888999999998762222345667889998888765 356777888888753
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-08 Score=93.67 Aligned_cols=169 Identities=12% Similarity=0.025 Sum_probs=120.7
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 227 DEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 227 ~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
++++.++.+++ ++.+..+++..+.+....+ ....++++.+++++++. .+..++...+.++.. .++++++
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~---~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~ee 161 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG---PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDE 161 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC---chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHH
Confidence 44444444443 3466777888887776552 01236788888888875 678899999999988 8889999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhCC--CCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 303 LEWLTHAARQQ--LYSAYNGIGYLYVKGY--GVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLAC 376 (525)
Q Consensus 303 ~~~~~~a~~~~--~~~a~~~lg~~~~~g~--~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~ 376 (525)
+.++.++++.+ +..+++..+.+..... +......++++.+..+++.. ++..+++.++.++........+..+|+
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 99999998864 7889999888875420 10111346788888888865 688899999999877322235566788
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 009801 377 KYFLVAANA--GHQKAFYQLAKMFHTGV 402 (525)
Q Consensus 377 ~~~~~a~~~--~~~~a~~~l~~~y~~g~ 402 (525)
..+.++.+. .++.++..|+.+|..+.
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 888887765 57788888999988643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-07 Score=88.26 Aligned_cols=322 Identities=12% Similarity=-0.019 Sum_probs=233.9
Q ss_pred hHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHH
Q 009801 107 VMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKL 182 (525)
Q Consensus 107 ~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~ 182 (525)
-++-|+..|..+. .+.....+...+..-.. -+..+.-..++++|+.. ....-++..+..+...||...|..+
T Consensus 531 ~~~carAVya~alqvfp~k~slWlra~~~ek~----hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 531 AIECARAVYAHALQVFPCKKSLWLRAAMFEKS----HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 3455555565544 33344444444444333 45677777888888875 3445566777888888999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCcc
Q 009801 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 183 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
+.++.+..+.+. .++.-...+......++.|..+|.++-.. +....++.-+.+-+.. +
T Consensus 607 l~~af~~~pnse----------------eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~l-----d 665 (913)
T KOG0495|consen 607 LDQAFEANPNSE----------------EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYL-----D 665 (913)
T ss_pred HHHHHHhCCCcH----------------HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHh-----h
Confidence 999987655542 23444555667788899999999998554 7778888877777666 4
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYT 337 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~ 337 (525)
+.++|+.+++.+++. .....++.+|+++.+ +++.+.|...|.+..+. +.+..+..|+.+-.. .++..
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-----~~~~~ 736 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-----DGQLV 736 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-----hcchh
Confidence 999999999999986 678899999999999 99999999999998876 367778888888776 45888
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHH--HHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 338 KAKEYFEKAADNEEAGGHYNLGVM--YYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415 (525)
Q Consensus 338 ~A~~~~~~a~~~~~~~a~~~lg~~--y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~ 415 (525)
+|...+.++.-.+...+.+.|..+ -.+ .++.+.|.....+|++.=......+...+...+.+ ++-.+++..+
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~ElR----~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~--~rkTks~DAL 810 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMELR----AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP--QRKTKSIDAL 810 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc--ccchHHHHHH
Confidence 999999999877655555555544 455 78999999999999988555556666666655332 3334444444
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhC
Q 009801 416 KLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYG 470 (525)
Q Consensus 416 ~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~ 470 (525)
++. .+++..+...|..++...++++|+.||++|+.. ++.+++.++-..+..+|
T Consensus 811 kkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 811 KKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 332 246677788899999999999999999999976 46667766656655544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-09 Score=96.08 Aligned_cols=180 Identities=16% Similarity=0.075 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP---QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
...++.++.+|..+ ...+++++|+..|+++++. +++ .+++.+|.+|.. .+++++|+..|+++++..
T Consensus 30 ~~~~~~~~~~g~~~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 30 EWPAEELYEEAKEA-----LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLH 100 (235)
T ss_pred cCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHC
Confidence 45677888888877 3457888888888888765 232 577888888888 888888888888887653
Q ss_pred --C---HHHHHHHHHHHHhCCC---CCccCHHHHHHHHHHHHhCC--ChhHH---HHHHHHHHcCCCCcCCHHHHHHHHH
Q 009801 314 --L---YSAYNGIGYLYVKGYG---VEKKNYTKAKEYFEKAADNE--EAGGH---YNLGVMYYKGIGVKRDVKLACKYFL 380 (525)
Q Consensus 314 --~---~~a~~~lg~~~~~g~~---~~~~~~~~A~~~~~~a~~~~--~~~a~---~~lg~~y~~g~~~~~~~~~A~~~~~ 380 (525)
+ ..+++.+|.++..... ...+++++|++.|+++++.. +..+. ..++..+..
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---------------- 164 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---------------- 164 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------------
Confidence 2 2367888888765211 01246778888888877652 22222 111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 381 VAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 381 ~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.......+|.+|.. .+++.+|+..|+++++..+ +.+++.+|.++...|++++|..+++.....
T Consensus 165 ------~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 ------LAGKELYVARFYLK----RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ------HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01223467888887 8999999999999998743 478999999999999999999988776543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.9e-09 Score=87.71 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=98.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 340 KEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 340 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
..+++++++.+ |..++.+|..+.. .+++++|+.+|++++.. .+..++..+|.++.. .+++++|+.+|++
T Consensus 13 ~~~~~~al~~~-p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSVD-PETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----LKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 45777777764 4447778888888 89999999999998877 678888999999887 8999999999999
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 418 a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
+++.+| +.+++++|.++...|++++|+..|+++++. +++..+.+.+.+...
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 998864 778889999999999999999999999876 567777777766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.4e-09 Score=87.93 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 375 A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
-..+++++++.+.. ..+.+|..+.. .+++++|+.+|++++..+| ..++..+|.++...|++++|+..|+++++
T Consensus 12 ~~~~~~~al~~~p~-~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPE-TVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHH-HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34678888887544 46778999987 9999999999999999975 77889999999999999999999999998
Q ss_pred c--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 453 L--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 453 ~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
. +++.+++++|.++.. .+++++|+..|++|++.. ++..+...|.+-
T Consensus 87 l~p~~~~a~~~lg~~l~~----------------~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKM----------------MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 6 689999999999998 678999999999999864 677777777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-07 Score=101.12 Aligned_cols=349 Identities=12% Similarity=-0.017 Sum_probs=233.7
Q ss_pred hHhHHHHHHHHHHHHhcCC-hHHHHHHHHhhhcCCCccCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGD-PHARSVLGFLYGMGMMRERNKGKAFLYHHFA---AEGGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a---~~~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++.+|+.++..+.+... .......|..... .++...+..++... ...+++......+.++...+++++|.
T Consensus 354 ~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~----~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 354 QGFPSEAIHHALAAGDAQLLRDILLQHGWSLFN----QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHh----cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 4456666665554322211 1222333443333 55677777776553 22355666677888888999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc---CC----HHHHHHHHHHHH
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK---GN----AGAMYKIGLFYY 253 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~----~~a~~~Lg~~y~ 253 (525)
.++.++.+...... . ...+ ..........+.++...|++++|...++++... ++ ..+...+|.++.
T Consensus 430 ~~l~~a~~~~~~~~-~-~~~~-----~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 430 TLLARAEQELKDRN-I-ELDG-----TLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred HHHHHHHHhccccC-c-ccch-----hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 99988765421100 0 0000 000111223566778899999999999998652 22 235677888887
Q ss_pred hcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC----------CH
Q 009801 254 FGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----------LY 315 (525)
Q Consensus 254 ~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------~~ 315 (525)
.. +++++|..++++++.. +. ..+...+|.++.. .|++++|..+++++++.. ..
T Consensus 503 ~~-----G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 503 CK-----GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----QGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred Hc-----CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 66 4999999999998854 22 2466788999998 999999999999987641 12
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----C---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----E---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--- 385 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 385 (525)
.....+|.++.. .|++++|...+++++.. + ...++..+|.++.. .+++++|...+.++...
T Consensus 574 ~~~~~la~~~~~-----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 574 FLLRIRAQLLWE-----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHHHHHHHHHHH-----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhc
Confidence 234566777765 57999999999998764 1 23456678899998 99999999999988654
Q ss_pred -CC-HHHHH---HHH-HHHHcCCCCcCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 386 -GH-QKAFY---QLA-KMFHTGVGLKKNLHMATALYKLVAERGPW------SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 386 -~~-~~a~~---~l~-~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+. ..... .+. ..+.. .++.+.|..++......... .....++.++...|++++|...+++++..
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQM----TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHH----CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 11111 111 22222 67899999998776543211 12357888999999999999999999864
Q ss_pred ----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 454 ----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 454 ----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+ ...++..+|.++.. .++.++|..++++|++..
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~----------------~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQ----------------QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHh
Confidence 2 23477788888887 667899999999998754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.3e-07 Score=89.37 Aligned_cols=293 Identities=14% Similarity=0.055 Sum_probs=187.1
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCC
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~ 201 (525)
.+.+.....++.. .|++++|++++++.... +....+-..|.++...|++++|...|+.+++++|.+
T Consensus 4 SE~lLY~~~il~e----~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-------- 71 (517)
T PF12569_consen 4 SELLLYKNSILEE----AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-------- 71 (517)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------
Confidence 4556666667776 78888888888776553 566777788888888888888888888888765543
Q ss_pred CchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-CHH
Q 009801 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EPQ 280 (525)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 280 (525)
...+..|..+..-.......+.+.-...|++....- .+.
T Consensus 72 ----------------------------------------~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~ 111 (517)
T PF12569_consen 72 ----------------------------------------YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD 111 (517)
T ss_pred ----------------------------------------HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc
Confidence 233333333321110011124555566666544331 112
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----------
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----------- 349 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----------- 349 (525)
+...+...+..| ..=...+..|+...+..|.|....+|-.+|.. ..+..-....+......
T Consensus 112 ~~~rl~L~~~~g---~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d-----~~K~~~i~~l~~~~~~~l~~~~~~~~~~ 183 (517)
T PF12569_consen 112 APRRLPLDFLEG---DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD-----PEKAAIIESLVEEYVNSLESNGSFSNGD 183 (517)
T ss_pred chhHhhcccCCH---HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC-----hhHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence 222333333322 11233456667777777777777777777743 11211112222221111
Q ss_pred ----CCh----hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 350 ----EEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 350 ----~~~----~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
..| .+++.|+..|.. .+++++|+.+.++|++. ..++.+..-|.++.+ .|++++|.+++..|-
T Consensus 184 ~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh----~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 184 DEEKEPPSTLLWTLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH----AGDLKEAAEAMDEAR 255 (517)
T ss_pred ccccCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Confidence 112 255788999999 99999999999999988 457888888999998 999999999999999
Q ss_pred HcCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCh-HH--------HH--HHHHHHHhhhCCCccccCCCCCCCChH
Q 009801 420 ERGPWSSLS--RWALESYLKGDVGKAFLLYSRMAELGY-EV--------AQ--SNAAWILDKYGEGSMCMGESGFCTDAE 486 (525)
Q Consensus 420 ~~~~~~a~~--~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~--------a~--~~la~~~~~~~~~~~~~~~~~~~~~~~ 486 (525)
.++..+=+. ..+..+.+.|+.++|..........+. +. .| ...|..|.+ .+
T Consensus 256 ~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r----------------~~ 319 (517)
T PF12569_consen 256 ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR----------------QG 319 (517)
T ss_pred hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH----------------Hh
Confidence 998655443 456667889999999999988876541 11 22 234555555 66
Q ss_pred hHHHHHHHHHHHHh
Q 009801 487 RHQCAHSLWWQASE 500 (525)
Q Consensus 487 ~~~~A~~~~~~a~~ 500 (525)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 77788887776554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-08 Score=103.23 Aligned_cols=216 Identities=11% Similarity=0.006 Sum_probs=145.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLY 315 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 315 (525)
++.+..++..|...| ...+++++|+...+.+++. +....++.+|.++.. .+++.++.-.
T Consensus 27 ~p~n~~a~~~Li~~~-----~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q----~~~~~~~~lv---------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAY-----KSENLTDEAKDICEEHLKEHKKSISALYISGILSLS----RRPLNDSNLL---------- 87 (906)
T ss_pred CcchHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh----hcchhhhhhh----------
Confidence 445667777777666 3456777777777766654 455677777777666 5553333221
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFY 392 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 392 (525)
.++..... ..++.-...++.+..+. ++..|++.||.+|.. .++.++|...|+++++. .++.+++
T Consensus 88 ----~~l~~~~~-----~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 88 ----NLIDSFSQ-----NLKWAIVEHICDKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ----hhhhhccc-----ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHHH
Confidence 22222211 22443333333344444 355699999999999 99999999999999987 6899999
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh-----------------
Q 009801 393 QLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGY----------------- 455 (525)
Q Consensus 393 ~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------- 455 (525)
++|..|.. . |+++|+.++.+|+.. ++..+++.++..+.++.++...
T Consensus 155 n~AY~~ae----~-dL~KA~~m~~KAV~~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 155 KLATSYEE----E-DKEKAITYLKKAIYR------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHH----h-hHHHHHHHHHHHHHH------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 99999997 6 999999999999986 5555566666666666655421
Q ss_pred --HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 456 --EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 456 --~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
..+.--+=-++..| ...+++++++.+++++++.. |..+.+.|..||.
T Consensus 218 ~~~~~~~~~~~l~~~y-------------~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPY-------------KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHH-------------hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11111111111221 22778999999999999865 7889999999998
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.5e-08 Score=92.06 Aligned_cols=209 Identities=22% Similarity=0.236 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhh
Q 009801 142 RNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRK 221 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (525)
.|++.|...|++| |..|...+++++|.+.|.++++....
T Consensus 29 ~~~e~Aa~~y~~A------------a~~fk~~~~~~~A~~ay~kAa~~~~~----------------------------- 67 (282)
T PF14938_consen 29 PDYEEAADLYEKA------------ANCFKLAKDWEKAAEAYEKAADCYEK----------------------------- 67 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHTT-CHHHHHHHHHHHHHHHH-----------------------------
T ss_pred CCHHHHHHHHHHH------------HHHHHHHhccchhHHHHHHHHHHHHH-----------------------------
Confidence 4778888888877 45677778888888888877654221
Q ss_pred ccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCC
Q 009801 222 SRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGA 293 (525)
Q Consensus 222 ~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~ 293 (525)
.++...| ..++...+.+|... ++++|+.+|++|++. |. +.++..+|.+|..
T Consensus 68 -~~~~~~A------------a~~~~~Aa~~~k~~------~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~-- 126 (282)
T PF14938_consen 68 -LGDKFEA------------AKAYEEAANCYKKG------DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE-- 126 (282)
T ss_dssp -TT-HHHH------------HHHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC--
T ss_pred -cCCHHHH------------HHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--
Confidence 1222222 34556667777655 888999999998864 44 4577888888887
Q ss_pred CCC-CCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C-------hhHH
Q 009801 294 GVE-RNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E-------AGGH 355 (525)
Q Consensus 294 ~~~-~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~-------~~a~ 355 (525)
. +++++|+++|++|++. + ...+...++.++.. .+++++|++.|++.+... + ...+
T Consensus 127 --~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 127 --QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp --TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred --HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 6 7899999999998764 2 23456677777765 458888888888876541 1 1234
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CH--HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQ--KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~--~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (525)
+..+.+++. .+|...|...+++..... .. .....|-..+..| ....+++|+.-|.....++++.
T Consensus 200 l~a~l~~L~----~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~--D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 200 LKAILCHLA----MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG--DVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHH----TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT---CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC--CHHHHHHHHHHHcccCccHHHH
Confidence 566777777 778888877777766442 22 2333334444432 3556777777776665555543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.6e-08 Score=89.73 Aligned_cols=173 Identities=18% Similarity=0.068 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCC--H---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCH
Q 009801 264 TKALMWFSKAADKGE--P---QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNY 336 (525)
Q Consensus 264 ~~A~~~~~~a~~~~~--~---~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 336 (525)
.+|+..+++.+.... | .+...=+.++.. .+++++|...--..++.+ +.++++.-|.++.. ..+.
T Consensus 149 anal~~~~~~~~s~s~~pac~~a~~lka~cl~~----~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-----~~~~ 219 (486)
T KOG0550|consen 149 ANALPTLEKLAPSHSREPACFKAKLLKAECLAF----LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-----NDNA 219 (486)
T ss_pred hhhhhhhhcccccccCCchhhHHHHhhhhhhhh----cccchhHHHHHHHHHhcccchhHHHHhccccccc-----ccch
Confidence 344555555544322 2 233444556665 889999988777776665 77888888888765 4589
Q ss_pred HHHHHHHHHHHhCCCh----h----------HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHH
Q 009801 337 TKAKEYFEKAADNEEA----G----------GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAK 396 (525)
Q Consensus 337 ~~A~~~~~~a~~~~~~----~----------a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~ 396 (525)
++|+..|++++..+.. . .+-.-|.-... .+++.+|.+.|..++..+ ++..+.+.+.
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 9999999999877421 1 11223444455 777888888888887663 3344555555
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+... .++..+|+.-...|+.+++ ..++...|..+..++++++|++.|++|.+.
T Consensus 296 v~~r----Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 296 VNIR----LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhcc----cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554 7778888888888887774 567777777888888888888888888766
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-07 Score=99.85 Aligned_cols=213 Identities=15% Similarity=0.074 Sum_probs=158.1
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~ 197 (525)
++++..++..|...|.. .+++++|+...+.+++ ++....++.+|.++.+.++++++.-. .++..
T Consensus 27 ~p~n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-------- 92 (906)
T PRK14720 27 SLSKFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-------- 92 (906)
T ss_pred CcchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--------
Confidence 67788999999999977 7899999999997776 46788999999999998888777655 33332
Q ss_pred CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH-HHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh
Q 009801 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ-AQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (525)
.....++ .+++++-.. .+. .+..|++.||.+|.+. ++.++|+..|+++++
T Consensus 93 ----------------------~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~-----g~~~ka~~~yer~L~ 144 (906)
T PRK14720 93 ----------------------FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKL-----NENKKLKGVWERLVK 144 (906)
T ss_pred ----------------------cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHc-----CChHHHHHHHHHHHh
Confidence 1122233 444444433 232 5667999999999887 499999999999998
Q ss_pred c--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---
Q 009801 276 K--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--- 350 (525)
Q Consensus 276 ~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--- 350 (525)
. .++.++.++|..|.. . |.++|+.++.+|+.. +.. .+++.++..+.++.+..+
T Consensus 145 ~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~------------~i~-----~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 145 ADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR------------FIK-----KKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred cCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH------------HHh-----hhcchHHHHHHHHHHhcCccc
Confidence 6 688999999999998 7 999999999999876 111 125555555555555432
Q ss_pred -------------------ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 009801 351 -------------------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (525)
Q Consensus 351 -------------------~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~ 400 (525)
-...+.-|=..|.. .+++++++.+++++++. .+..+...++.+|..
T Consensus 203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~----~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA----LEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred chHHHHHHHHHHhhhccchhHHHHHHHHHHHhh----hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 12333444567777 88999999999999987 577788888888864
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-08 Score=88.44 Aligned_cols=114 Identities=12% Similarity=0.150 Sum_probs=96.3
Q ss_pred cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH-HcCCCCcCC-
Q 009801 334 KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMF-HTGVGLKKN- 407 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y-~~g~g~~~~- 407 (525)
++.++++..++++++. ++++++..||.+|.. .+++++|+..|+++++. +++..+..+|.++ .. .++
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~----~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQ----AGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCC
Confidence 3778888888888866 688899999999999 99999999999999887 6788888888864 43 344
Q ss_pred -HHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 408 -LHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 408 -~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
.++|...++++++.++ ..+++.+|..++..|++++|+.+++++++..+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5899999999998874 67888999999999999999999999988743
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-08 Score=87.92 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=102.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHH-HhcCC--HH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES-YLKGD--VG 441 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~-~~~g~--~~ 441 (525)
.++.++++..++++++. ++.+++..||.+|.. .+++++|+..|++++...+ +..+..+|.++ ...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 67789999999999877 799999999999998 9999999999999999974 77888899875 67777 59
Q ss_pred HHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCC
Q 009801 442 KAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503 (525)
Q Consensus 442 ~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 503 (525)
+|...++++++. +++.+++++|..+.. .+++++|+.+|+++++...
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~----------------~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFM----------------QADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhhCC
Confidence 999999999987 589999999999998 7789999999999998663
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-06 Score=97.50 Aligned_cols=289 Identities=9% Similarity=0.011 Sum_probs=198.0
Q ss_pred HHHHHhhhcCCCccCCHHHHHHHHHHHHcC----C-------CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhc
Q 009801 128 SVLGFLYGMGMMRERNKGKAFLYHHFAAEG----G-------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (525)
Q Consensus 128 ~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~-------~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~ 196 (525)
...+.++.. .+++.+|..++..+.+. + .......++.++...+++++|..+++++.+..+....
T Consensus 413 ~~~a~~~~~----~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~- 487 (903)
T PRK04841 413 LLQAWLAQS----QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY- 487 (903)
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH-
Confidence 445555555 66888888888876431 1 1345556788888889999999998888764221100
Q ss_pred cCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhcCCCCccCHHHHHH
Q 009801 197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK----GN----AGAMYKIGLFYYFGLRGLRRDRTKALM 268 (525)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~ 268 (525)
... .......+.++...|++++|...++++... +. ..+...+|.++...| +++.|..
T Consensus 488 -----~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-----~~~~A~~ 552 (903)
T PRK04841 488 -----YSR-----IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-----FLQAAYE 552 (903)
T ss_pred -----HHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-----CHHHHHH
Confidence 000 001235667777889999998888887532 22 346677888888774 9999999
Q ss_pred HHHHHHhc----CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCC
Q 009801 269 WFSKAADK----GE------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGV 331 (525)
Q Consensus 269 ~~~~a~~~----~~------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~ 331 (525)
++++++.. +. ......+|.++.. .|++++|...+++++... ...++..+|.++..
T Consensus 553 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---- 624 (903)
T PRK04841 553 TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA---- 624 (903)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----
Confidence 99998764 11 2234567888888 899999999999987641 24455667777765
Q ss_pred CccCHHHHHHHHHHHHhC----CCh-hHHH---H-HHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CH----HHHHHHHH
Q 009801 332 EKKNYTKAKEYFEKAADN----EEA-GGHY---N-LGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ----KAFYQLAK 396 (525)
Q Consensus 332 ~~~~~~~A~~~~~~a~~~----~~~-~a~~---~-lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~----~a~~~l~~ 396 (525)
.|++++|...+.++... +.. .... . ....+.. .++.+.|..++....... .. .....++.
T Consensus 625 -~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 625 -RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM----TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred -cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH----CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 56999999999988653 111 1111 1 1233444 678888888876654321 11 12346777
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.. .+++++|+..+++++... . ..++..+|.++...|+.++|...+.+|++.
T Consensus 700 ~~~~----~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQIL----LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7776 889999999999998652 1 346778899999999999999999999875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-06 Score=88.73 Aligned_cols=185 Identities=22% Similarity=0.254 Sum_probs=130.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCc
Q 009801 147 AFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226 (525)
Q Consensus 147 A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (525)
....+++|.+.++ +--...|.+-...|..++|+.+|++....+ -+..+|+..|.+
T Consensus 788 gaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D------------------------LlNKlyQs~g~w 842 (1416)
T KOG3617|consen 788 GARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD------------------------LLNKLYQSQGMW 842 (1416)
T ss_pred hHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH------------------------HHHHHHHhcccH
Confidence 3445667766553 344456777778899999999999885532 355678899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh----------------------cCCHHHHHH
Q 009801 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----------------------KGEPQSMEF 284 (525)
Q Consensus 227 ~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~ 284 (525)
++|+++-+.--...--..+++.+..+... +|.+.|+++|+|+-. ..++..+..
T Consensus 843 ~eA~eiAE~~DRiHLr~Tyy~yA~~Lear-----~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W 917 (1416)
T KOG3617|consen 843 SEAFEIAETKDRIHLRNTYYNYAKYLEAR-----RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW 917 (1416)
T ss_pred HHHHHHHhhccceehhhhHHHHHHHHHhh-----ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH
Confidence 99998866543334456788888877666 489999999999621 134566667
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHc
Q 009801 285 LGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYK 364 (525)
Q Consensus 285 Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 364 (525)
.|..... .|+.+.|+.+|..|-+. +.+-.+.=. +|+.++|-.. |-+.++-.|++.||..|.+
T Consensus 918 WgqYlES----~GemdaAl~~Y~~A~D~------fs~VrI~C~-----qGk~~kAa~i---A~esgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 918 WGQYLES----VGEMDAALSFYSSAKDY------FSMVRIKCI-----QGKTDKAARI---AEESGDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHhc----ccchHHHHHHHHHhhhh------hhheeeEee-----ccCchHHHHH---HHhcccHHHHHHHHHHhhh
Confidence 7777776 88888888888876432 222222211 3577777644 3346888899999999999
Q ss_pred CCCCcCCHHHHHHHHHHHH
Q 009801 365 GIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~ 383 (525)
.++..+|+.+|.+|-
T Consensus 980 ----~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 980 ----DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hHHHHHHHHHHHHHH
Confidence 999999999998764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-05 Score=78.66 Aligned_cols=354 Identities=12% Similarity=0.076 Sum_probs=222.6
Q ss_pred ccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--CHHH
Q 009801 87 GSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--NIQS 162 (525)
Q Consensus 87 a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a 162 (525)
++|..+.-.+. .+.|.+.++..++.. .+.+++++...|..... .++.++|..+-+.++..+ ..-.
T Consensus 9 ~lF~~~lk~yE-------~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~----lg~~~ea~~~vr~glr~d~~S~vC 77 (700)
T KOG1156|consen 9 ALFRRALKCYE-------TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNC----LGKKEEAYELVRLGLRNDLKSHVC 77 (700)
T ss_pred HHHHHHHHHHH-------HHHHHhHHHHHHHHHHhCCccchhHHhccchhhc----ccchHHHHHHHHHHhccCcccchh
Confidence 45555555554 778999999888854 56788999999988776 889999999999998753 5567
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH--HHcC
Q 009801 163 KMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ--AQKG 240 (525)
Q Consensus 163 ~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~ 240 (525)
+..+|.++...++|++|+++|+.++..++++... ...+..+..+.++++-....-.+. ..++
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qi----------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQI----------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHH----------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 8899999999999999999999999887766432 444555666667776665554444 3446
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE----------PQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~----------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
.-..+..++..+.-. +++..|....+...+..+ ..+...-..+... .+..++|++.+..--
T Consensus 142 ~ra~w~~~Avs~~L~-----g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E----~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLL-----GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE----AGSLQKALEHLLDNE 212 (700)
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHhhh
Confidence 666777777777555 489999888777654421 2333333444444 556677766665431
Q ss_pred Hc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChh--HHHHHHHHHHcCCCCcCCHHHHH-HHHHHH---
Q 009801 311 RQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAG--GHYNLGVMYYKGIGVKRDVKLAC-KYFLVA--- 382 (525)
Q Consensus 311 ~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~y~~g~~~~~~~~~A~-~~~~~a--- 382 (525)
.. +.......-+.++.. .+++++|+..|...+..+... -+..+=.++.. ..+..+++ ..|...
T Consensus 213 ~~i~Dkla~~e~ka~l~~k-----l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk----~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 213 KQIVDKLAFEETKADLLMK-----LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK----IKDMLEALKALYAILSEK 283 (700)
T ss_pred hHHHHHHHHhhhHHHHHHH-----HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH----HhhhHHHHHHHHHHHhhc
Confidence 11 112222334445554 458999999999998774222 22222222211 22333333 333322
Q ss_pred -------------------------------HHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH-------c---
Q 009801 383 -------------------------------ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE-------R--- 421 (525)
Q Consensus 383 -------------------------------~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~-------~--- 421 (525)
++.|-+.....+-..|. +..+.- ..++-+. -
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk-------~p~k~~-~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK-------DPEKVA-FLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh-------chhHhH-HHHHHHHHHHhhcccccC
Confidence 22222333333333332 222111 3333321 1
Q ss_pred ---------CChH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChH
Q 009801 422 ---------GPWS----SLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAE 486 (525)
Q Consensus 422 ---------~~~~----a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~ 486 (525)
.++. .++.++..+...|+++.|..|++.|+..- ..+-+.-=|.++.+ .|
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH----------------~G 419 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH----------------AG 419 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh----------------cC
Confidence 1222 23456777889999999999999999873 33344455788877 66
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHH
Q 009801 487 RHQCAHSLWWQASEQGNEHAALL 509 (525)
Q Consensus 487 ~~~~A~~~~~~a~~~~~~~a~~~ 509 (525)
++++|..|+..|.+.+++|-..+
T Consensus 420 ~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 420 LLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred ChHHHHHHHHHHHhccchhHHHH
Confidence 78999999999999887665444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-07 Score=84.67 Aligned_cols=258 Identities=16% Similarity=0.017 Sum_probs=186.1
Q ss_pred hHhHHHHHHHHHHHHh--cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
..+|..|+..+..|++ |.++..+..-+..+.. .++++.|.-..++.++. +...++...+.++...++..+|.
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 7789999999999864 5677777777777777 77888998888888764 67788888899998888888888
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchh-hh--hcccchhhhhHhhhccCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhc
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEP-IR--IHNGAEENKGALRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFG 255 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~ 255 (525)
+.++..-.--..+... ....++.. .+ -.......+...+...+++++|++.--... ++.+.++.+.-|.+++..
T Consensus 138 ~~~~~~~~~~~anal~-~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALP-TLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhhhhhhhHHhhhhh-hhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 7766211000000000 00000000 00 001112345556677888888887766554 447899999999999888
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCH--------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CH
Q 009801 256 LRGLRRDRTKALMWFSKAADKGEP--------------QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------LY 315 (525)
Q Consensus 256 ~~~~~~~~~~A~~~~~~a~~~~~~--------------~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~ 315 (525)
+ +.++|+.+|++++..+.. ..+..-|...+. .|++.+|.+.|..++..+ ++
T Consensus 217 ~-----~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 217 D-----NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred c-----chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCccccchhH
Confidence 4 999999999999987532 344455666666 889999999999999764 34
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
..+.+.+.+... .|+..+|+.-...|++.+ ...++..-|.++.. .+++++|++.|+++++.
T Consensus 288 klY~nra~v~~r-----Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~----le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 288 KLYGNRALVNIR-----LGRLREAISDCNEALKIDSSYIKALLRRANCHLA----LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHhHhhhcc-----cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 556666666654 569999999999998885 56788899999999 99999999999999876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-05 Score=75.61 Aligned_cols=275 Identities=15% Similarity=0.019 Sum_probs=181.4
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHH--HHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhH
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSK--MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~--~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
.||+.+|.+...++++.+..+.. ..-+..--..||.+.|-.+..++.+..++
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-------------------------- 150 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-------------------------- 150 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC--------------------------
Confidence 78999999999998887644333 22334555567777777777666543110
Q ss_pred hhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC
Q 009801 219 LRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~ 296 (525)
.........+.+.... +|+..|..-..++.+. .++.+....-.+|.. .
T Consensus 151 ---------------------~~l~v~ltrarlll~~-----~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~ 200 (400)
T COG3071 151 ---------------------DTLAVELTRARLLLNR-----RDYPAARENVDQLLEMTPRHPEVLRLALRAYIR----L 200 (400)
T ss_pred ---------------------chHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH----h
Confidence 1223344455555555 3777777777777765 567777777788887 8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHH-----HHHHHHHHhCCCCCccCHHHHHHHHHHHHh--CCChhHHHHHHHHHHcCC
Q 009801 297 RNYTKALEWLTHAARQQ---LYSAY-----NGIGYLYVKGYGVEKKNYTKAKEYFEKAAD--NEEAGGHYNLGVMYYKGI 366 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~---~~~a~-----~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~ 366 (525)
|++.....++.+..+.+ +.+.. ...|.+-... ..+..+.-..|++..-. ..++.....++.-+..
T Consensus 201 g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~---~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~-- 275 (400)
T COG3071 201 GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR---DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR-- 275 (400)
T ss_pred ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH--
Confidence 88888877777766654 22221 1222222211 01112222234444322 2568888888888888
Q ss_pred CCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHH
Q 009801 367 GVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A 443 (525)
.++.++|.++.+.+++.. +++ +..+--. -..++..+=++..++.+... ++..+..||..+++.+.+.+|
T Consensus 276 --l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~-----l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 276 --LGDHDEAQEIIEDALKRQWDPR-LCRLIPR-----LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred --cCChHHHHHHHHHHHHhccChh-HHHHHhh-----cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 999999999999999884 444 2222111 13667777777777777775 356778999999999999999
Q ss_pred HHHHHHHHHcC-hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 444 FLLYSRMAELG-YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 444 ~~~~~~a~~~~-~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
..+++.|++.. +...+..+|..++. .++..+|...+++++.
T Consensus 348 ~~~leaAl~~~~s~~~~~~la~~~~~----------------~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 348 SEALEAALKLRPSASDYAELADALDQ----------------LGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHH----------------cCChHHHHHHHHHHHH
Confidence 99999999874 66677889999998 4456778888887763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-05 Score=75.36 Aligned_cols=382 Identities=12% Similarity=-0.004 Sum_probs=213.9
Q ss_pred CCCCCCCccccCCC--CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHH-HH-hcCChHHHHHHHHhhhcCCCccC
Q 009801 67 LDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVES-AA-MEGDPHARSVLGFLYGMGMMRER 142 (525)
Q Consensus 67 ~~~~~a~~~~~~~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~-a~-~~~~~~a~~~lg~~y~~g~g~~~ 142 (525)
+++++|...-.+.+ -|+++.+..-.-.+.+. ...|++|+...++ .+ ..++. ..+.-+++.+. .+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-------~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr----ln 93 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-------LDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR----LN 93 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-------hhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH----cc
Confidence 44555555555552 24556665554444444 7779999977666 22 33333 22778888777 88
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhc
Q 009801 143 NKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222 (525)
Q Consensus 143 d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (525)
..++|++.++ .++..+...+..-|..+.+.++|++|++.|+.+++........ ..+. +....
T Consensus 94 k~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~--------~~r~-----nl~a~---- 155 (652)
T KOG2376|consen 94 KLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE--------ERRA-----NLLAV---- 155 (652)
T ss_pred cHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH--------HHHH-----HHHHH----
Confidence 9999999998 6666667788888999999999999999999987653322111 0000 00000
Q ss_pred cCCcHHHHHH-HHHHH---HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------C----------CHHH
Q 009801 223 RGEDDEAFQI-LEYQA---QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------G----------EPQS 281 (525)
Q Consensus 223 ~~~~~~A~~~-~~~~~---~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~----------~~~a 281 (525)
..+... +.+.. ..+.-+-+|+.+.++...+ +|.+|++.+++|.+. + -...
T Consensus 156 ----~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g-----ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 156 ----AAALQVQLLQSVPEVPEDSYELLYNTACILIENG-----KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred ----HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 001111 11111 1246678899999998774 999999999999432 1 1246
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCcc------------CHHHHHHHH
Q 009801 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQLY------SAYNGIGYLYVKGYGVEKK------------NYTKAKEYF 343 (525)
Q Consensus 282 ~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~------~a~~~lg~~~~~g~~~~~~------------~~~~A~~~~ 343 (525)
...|+.++.. .|+.++|...|...+....+ .+.++|-.+-.. ..+..+ ..+..+.-+
T Consensus 227 rvQlayVlQ~----~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d-~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 227 RVQLAYVLQL----QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD-QNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHH----hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc-cccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 6778888988 99999999999988876421 222333222111 000000 001111100
Q ss_pred HH----HH----------------------hC--CChhHHH--HHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHH
Q 009801 344 EK----AA----------------------DN--EEAGGHY--NLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKA 390 (525)
Q Consensus 344 ~~----a~----------------------~~--~~~~a~~--~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 390 (525)
.. ++ .. ..|...+ .+-.++... ...+.+|..++....+.. ....
T Consensus 302 s~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~---~~~~~ka~e~L~~~~~~~p~~s~~v 378 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVR---EKKHKKAIELLLQFADGHPEKSKVV 378 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHH---HHHHhhhHHHHHHHhccCCchhHHH
Confidence 00 00 00 1111111 111111110 123566666666665542 2345
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHH--------HHHHcCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYK--------LVAERGPWSSLSR-WALESYLKGDVGKAFLLYSRMAEL------G- 454 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~--------~a~~~~~~~a~~~-l~~~~~~~g~~~~A~~~~~~a~~~------~- 454 (525)
...++.+... .++++.|++.+. ...+..+..+... +-..++..++.+-|...+.+|+.. +
T Consensus 379 ~L~~aQl~is----~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 379 LLLRAQLKIS----QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 5566666665 899999999998 4555554444433 333455556555555555555532 1
Q ss_pred --hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 455 --YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 455 --~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
....+..++.+-.+ .++-++|...+++-++.+ +.+++..|-..|-
T Consensus 455 ~~l~~~~~~aa~f~lr----------------~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLR----------------HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred hHHHhHHHHHhHHHHh----------------cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 11122333333333 346788999999988844 5667776666553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-06 Score=78.34 Aligned_cols=180 Identities=15% Similarity=0.108 Sum_probs=140.2
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHH--HHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSK--MAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~--~~la~~y~~~~~~~~A~ 180 (525)
..++..|++.+.--- .+.+-.++..||.+|.. ..++..|...|++....--..+. +.-+....+.+.+..|+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 678999999988743 44467888999999998 88999999999998775444444 44567777788899998
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLR 260 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~ 260 (525)
.....+.+...- ......-...+..+.+++..+..+.++....++++...+.|-+.++.
T Consensus 99 rV~~~~~D~~~L----------------~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke----- 157 (459)
T KOG4340|consen 99 RVAFLLLDNPAL----------------HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE----- 157 (459)
T ss_pred HHHHHhcCCHHH----------------HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc-----
Confidence 887765432100 00111224556678889999999999888789999999999998777
Q ss_pred cCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 261 RDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
++++.|++-|+.|++-+ ++-.-++++.++++ .+++..|+++....++.|
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERG 208 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhh
Confidence 49999999999999863 56778899999998 999999999999998864
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=7e-07 Score=84.56 Aligned_cols=210 Identities=20% Similarity=0.209 Sum_probs=136.4
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHhccccH
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GN----IQSKMAVAYTYLRQDMH 176 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~la~~y~~~~~~ 176 (525)
..++++|...|+++ |..|.. .+++++|.+.|.+|++. ++ ..++...+.+|... ++
T Consensus 28 ~~~~e~Aa~~y~~A------------a~~fk~----~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~ 90 (282)
T PF14938_consen 28 KPDYEEAADLYEKA------------ANCFKL----AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DP 90 (282)
T ss_dssp CHHHHHHHHHHHHH------------HHHHHH----TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TH
T ss_pred CCCHHHHHHHHHHH------------HHHHHH----HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CH
Confidence 35788888888775 445555 67888898888888652 22 23444555555444 77
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009801 177 DKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGL 256 (525)
Q Consensus 177 ~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~ 256 (525)
++|+++|+++++. +...|++..| +..+..+|.+|....
T Consensus 91 ~~Ai~~~~~A~~~------------------------------y~~~G~~~~a------------A~~~~~lA~~ye~~~ 128 (282)
T PF14938_consen 91 DEAIECYEKAIEI------------------------------YREAGRFSQA------------AKCLKELAEIYEEQL 128 (282)
T ss_dssp HHHHHHHHHHHHH------------------------------HHHCT-HHHH------------HHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHH------------------------------HHhcCcHHHH------------HHHHHHHHHHHHHHc
Confidence 7777777777553 3334444444 456778999996551
Q ss_pred CCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------C---HHHHH
Q 009801 257 RGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------L---YSAYN 319 (525)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~---~~a~~ 319 (525)
+++++|+++|++|++. +. ...+..+|.++.. .+++++|+..|++.+... . ...++
T Consensus 129 ----~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 129 ----GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp ------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 4999999999999875 32 3567789999999 999999999999998642 1 12345
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-----Ch--hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EA--GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ 388 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-----~~--~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 388 (525)
..+.+++. .+|+..|...+++..+.. .. .....|-..+.. +....+++++.-|.+..++++.
T Consensus 201 ~a~l~~L~-----~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~--~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 201 KAILCHLA-----MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE--GDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHH-----TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT--T-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHcccCccHHH
Confidence 66667765 569999999999988663 22 233445555554 2356788888888776555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-06 Score=91.04 Aligned_cols=128 Identities=6% Similarity=-0.026 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
.+++++.+||.+... .+.+++|+.+++.+++. ++..+..+++.++.+ .+.+++|..+++++++. +++
T Consensus 84 ~~~~~~~~La~i~~~-----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 84 HTELFQVLVARALEA-----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----QQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred ccHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHhhcCCCCH
Confidence 468899999999876 67999999999999876 788899999999999 99999999999999877 789
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|.++.. .+++++|+..|++++..+ ++.++..+|..+...|+.++|...|++|++.
T Consensus 155 ~~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 155 REILLEAKSWDE----IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999998 999999999999999765 4688899999999999999999999999876
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00014 Score=71.87 Aligned_cols=354 Identities=10% Similarity=-0.037 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc------------
Q 009801 89 YYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE------------ 156 (525)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~------------ 156 (525)
|..+.+.+. .+..++|+..++ .+++.+...+..-|.+.+. .+++++|+..|+..+.
T Consensus 83 fEKAYc~Yr-------lnk~Dealk~~~-~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 83 FEKAYCEYR-------LNKLDEALKTLK-GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred HHHHHHHHH-------cccHHHHHHHHh-cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 455555554 666777777776 5555556566666665554 6677777777765531
Q ss_pred ---------------------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhh
Q 009801 157 ---------------------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (525)
Q Consensus 157 ---------------------~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (525)
.+..+-+++.|.++...|+|++|++.++++.......+..++...--....+ .-+...
T Consensus 151 nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el-~~IrvQ 229 (652)
T KOG2376|consen 151 NLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL-NPIRVQ 229 (652)
T ss_pred HHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH-HHHHHH
Confidence 1355778999999999999999999999997776655444333200000111 112346
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHcCCHHH------HHHHHHHHHhcCCCCcc---------CHHHHHHHHHHHHhcCCHH
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQKGNAGA------MYKIGLFYYFGLRGLRR---------DRTKALMWFSKAADKGEPQ 280 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~a------~~~Lg~~y~~~~~~~~~---------~~~~A~~~~~~a~~~~~~~ 280 (525)
+..++...|+.++|.++|...+..+.++. ..+|--+--... ...+ ....+..+..+.....-..
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~-~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQN-YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccc-cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77788999999999999988766643322 222222111110 0000 0111112222211111223
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC---hhHHH
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE---AGGHY 356 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 356 (525)
.+.+.+.+.+. .+..+.+.+...+.-... ....-..+-..... ....+.++..++.+..+... .....
T Consensus 309 i~~N~~lL~l~----tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~----~~~~~~ka~e~L~~~~~~~p~~s~~v~L 380 (652)
T KOG2376|consen 309 IYRNNALLALF----TNKMDQVRELSASLPGMSPESLFPILLQEATKV----REKKHKKAIELLLQFADGHPEKSKVVLL 380 (652)
T ss_pred HHHHHHHHHHH----hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHhccCCchhHHHHH
Confidence 44445544443 333333333222211111 11111222222221 01147788888888877643 34677
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHcCCC----CcCCHHHHHHHHHHHHHcCC-
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFL--------VAANAGHQKAFYQLAKMFHTGVG----LKKNLHMATALYKLVAERGP- 423 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~--------~a~~~~~~~a~~~l~~~y~~g~g----~~~~~~~A~~~~~~a~~~~~- 423 (525)
.++.+... +++++.|+..+. ...+.++..+..........+.+ ...-+++|+.||+.......
T Consensus 381 ~~aQl~is----~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 381 LRAQLKIS----QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHh----cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 78888888 999999999998 55555655555444433322211 12235677777776543332
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 424 -~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
...+..++..-.+.|+-++|...+++.++. ++.+++..+-..|..
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 122234444555669999999999999986 567777777777754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-05 Score=72.29 Aligned_cols=238 Identities=13% Similarity=0.045 Sum_probs=143.2
Q ss_pred hHhHHHHHHHHHHHHhcCC---hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCH--HHHHHHHHHHhccccHHHH
Q 009801 105 VRVMEEATSEVESAAMEGD---PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTYLRQDMHDKA 179 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~--~a~~~la~~y~~~~~~~~A 179 (525)
.+|++-|+.+++-..+.+. ......+|.+|.. .+|+++|...|+-+.+.++. +...+||.++...|.|.+|
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 6789999999888654433 4567789999998 99999999999999887644 5567899999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009801 180 VKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL 259 (525)
Q Consensus 180 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~ 259 (525)
...-.++.+.... .|+ +-.+..+.++-++-..+.+..- +..+-...|+.+++..
T Consensus 111 ~~~~~ka~k~pL~-------------~RL-------lfhlahklndEk~~~~fh~~Lq--D~~EdqLSLAsvhYmR---- 164 (557)
T KOG3785|consen 111 KSIAEKAPKTPLC-------------IRL-------LFHLAHKLNDEKRILTFHSSLQ--DTLEDQLSLASVHYMR---- 164 (557)
T ss_pred HHHHhhCCCChHH-------------HHH-------HHHHHHHhCcHHHHHHHHHHHh--hhHHHHHhHHHHHHHH----
Confidence 7776655321100 111 1222233444444433332221 2235566676666544
Q ss_pred ccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHhCC-CCCc-
Q 009801 260 RRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-QL-YSAYNGIGYLYVKGY-GVEK- 333 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~-~~a~~~lg~~~~~g~-~~~~- 333 (525)
-.|++|+..|++.+..+ ....-..++.+|.. ..-++-+.+.+.--+.. ++ +.+.+..+-..++-. |...
T Consensus 165 -~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK----lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 165 -MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK----LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred -HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh----cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 38999999999987642 22344568888887 66666666666655554 33 333332222222210 0000
Q ss_pred -----------cCHHHHHHHHHHHH----------h------CCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 334 -----------KNYTKAKEYFEKAA----------D------NEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 334 -----------~~~~~A~~~~~~a~----------~------~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
..+..+....+.-+ + .--|+|-.+|...|.+ ++|.++|+...+.
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~----q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN----QNDVQEAISLCKD 310 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc----cccHHHHHHHHhh
Confidence 01112222211110 0 0247788899999999 9999999876553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-07 Score=97.05 Aligned_cols=129 Identities=10% Similarity=-0.030 Sum_probs=119.1
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
.+++++.+||.+..+ .+.+++|..+++.+++. ++..+..+++.++.. .+.+++|+.++++++..+| ..
T Consensus 84 ~~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 84 HTELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----QQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred ccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHhhcCCCCHH
Confidence 468999999999999 99999999999999987 899999999999998 9999999999999999874 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+++.+|.++...|++++|+..|++++.. +++.++.++|.++.. .++.++|...|++|++..
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----------------~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----------------RGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999976 468999999999988 667899999999998753
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-07 Score=93.13 Aligned_cols=211 Identities=13% Similarity=0.104 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
.......++.++.+.|=..+|+..|++..- +......|...|+-.+|..+..+..+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erlem------------------------w~~vi~CY~~lg~~~kaeei~~q~le 452 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLEM------------------------WDPVILCYLLLGQHGKAEEINRQELE 452 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHHH------------------------HHHHHHHHHHhcccchHHHHHHHHhc
Confidence 346677889999999999999999998743 34455667788888999999888887
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 239 -KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 239 -~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
+.++..+-.||++..+. .+|++|.+. -++.|.+.+|..... .++++++.+.++.+++.+
T Consensus 453 k~~d~~lyc~LGDv~~d~------------s~yEkawElsn~~sarA~r~~~~~~~~----~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDP------------SLYEKAWELSNYISARAQRSLALLILS----NKDFSEADKHLERSLEINP 516 (777)
T ss_pred CCCcchhHHHhhhhccCh------------HHHHHHHHHhhhhhHHHHHhhcccccc----chhHHHHHHHHHHHhhcCc
Confidence 57888888888887322 455555554 245577777877776 789999999999998875
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
....++.+|.+... -++++.|.+.|.+.+.. ++.+++.+++..|.. .++..+|...++.|++- ++.
T Consensus 517 lq~~~wf~~G~~ALq-----lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQ-----LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred cchhHHHhccHHHHH-----HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCC
Confidence 68899999999886 45999999999998755 789999999999999 99999999999999876 566
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
..+-|.-.+... .+.+++|+..|.+.+...
T Consensus 588 ~iWENymlvsvd----vge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 588 QIWENYMLVSVD----VGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred eeeechhhhhhh----cccHHHHHHHHHHHHHhh
Confidence 666666666665 789999999999998663
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-07 Score=91.11 Aligned_cols=209 Identities=20% Similarity=0.223 Sum_probs=172.5
Q ss_pred hhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHc
Q 009801 213 EENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD-KGEPQSMEFLGEIYAR 291 (525)
Q Consensus 213 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~ 291 (525)
...++.++.+.|-..+|+.++++ +..+-....+|...| +..+|.....+-++ ..++..+..||++..+
T Consensus 401 q~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg-----~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLG-----QHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhc-----ccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 34577788899999999999987 455666677777663 88889999888888 4677888889998877
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCc
Q 009801 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVK 369 (525)
Q Consensus 292 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~ 369 (525)
..-+++|.++.+.- +..|...+|..... .++++++.+.++.+++. .....++.+|.+..+ .
T Consensus 470 ----~s~yEkawElsn~~----sarA~r~~~~~~~~-----~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----l 532 (777)
T KOG1128|consen 470 ----PSLYEKAWELSNYI----SARAQRSLALLILS-----NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----L 532 (777)
T ss_pred ----hHHHHHHHHHhhhh----hHHHHHhhcccccc-----chhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----H
Confidence 55566666555543 33466666665544 45999999999999887 468899999999999 9
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHH
Q 009801 370 RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
++++.|..+|.+.+.. ++.+++++++..|.. .++-.+|...+++|++.+ ++..+.+.-.+....|.+++|++
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 9999999999998865 899999999999997 899999999999999875 67788888888999999999999
Q ss_pred HHHHHHHc
Q 009801 446 LYSRMAEL 453 (525)
Q Consensus 446 ~~~~a~~~ 453 (525)
.|.+-+++
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 99998765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-05 Score=81.57 Aligned_cols=287 Identities=15% Similarity=0.072 Sum_probs=200.8
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhc--CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNI 160 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 160 (525)
++.+.+...++.. .|++++|+.++++.... +....+-..|.++.. .|+.++|...|+..++. +|.
T Consensus 4 SE~lLY~~~il~e-------~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~k----Lg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 4 SELLLYKNSILEE-------AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLK----LGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcH
Confidence 4445555555554 78899999999985432 445667789999998 89999999999999875 577
Q ss_pred HHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCc-HHHHHHHH
Q 009801 161 QSKMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED-DEAFQILE 234 (525)
Q Consensus 161 ~a~~~la~~y~~-----~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~ 234 (525)
..+..|..+... ..+.+.-..+|++.....|.+. .+..+.+.. ..-..+ ..+..++.
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~-------~~~rl~L~~----------~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD-------APRRLPLDF----------LEGDEFKERLDEYLR 135 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc-------chhHhhccc----------CCHHHHHHHHHHHHH
Confidence 777777777632 2357777888888876644432 111111110 001122 34556667
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---------------CCH----HHHHHHHHHHHcCCCC
Q 009801 235 YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---------------GEP----QSMEFLGEIYARGAGV 295 (525)
Q Consensus 235 ~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---------------~~~----~a~~~Lg~~y~~g~~~ 295 (525)
.....|.|....+|-.+|... .+..-....+...... ..| .+++.|++.|..
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~-----~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~---- 206 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDP-----EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY---- 206 (517)
T ss_pred HHHhcCCchHHHHHHHHHcCh-----hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH----
Confidence 778889999999999988422 1111111222221111 112 366889999988
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.|++++|+++.++|++.. .++.+...|.++.+ .|++.+|..+++.|-..+ |-......+..+.+ .++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-----~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR----a~~ 277 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-----AGDLKEAAEAMDEARELDLADRYINSKCAKYLLR----AGR 277 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH----CCC
Confidence 999999999999999885 68899999999987 679999999999998776 44455667888888 899
Q ss_pred HHHHHHHHHHHHHcC-CH----------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 372 VKLACKYFLVAANAG-HQ----------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 372 ~~~A~~~~~~a~~~~-~~----------~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
.++|......-.+.+ ++ .-....|.+|.. .+++..|+..|..+.+.
T Consensus 278 ~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r----~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 278 IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR----QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 999999887776554 11 122334777876 89999999999888654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-07 Score=76.95 Aligned_cols=105 Identities=19% Similarity=0.118 Sum_probs=67.9
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 342 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.|++++.. ++..+.+.+|..+.. .+++++|...+++++.. .++.++..+|.++.. .+++++|+.++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 45555554 245566666777776 67777777777666654 456666666766665 6667777777776
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 418 a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+++.++ +..++.+|.++...|++++|+.+++++++..
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 666653 4566666777777777777777776666653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-07 Score=76.13 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=96.6
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 304 EWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 304 ~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
..|++++..+ +..+...+|..+.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|..++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~ 74 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ-----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAY 74 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4677888765 67888999999987 77999999999999875 578899999999999 99999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH
Q 009801 380 LVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 380 ~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (525)
+++++. .++..++++|.++.. .+++++|+.+++++++.++..
T Consensus 75 ~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 75 ALAAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcccc
Confidence 999877 568899999999998 999999999999999998644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-06 Score=75.04 Aligned_cols=169 Identities=17% Similarity=0.039 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
++..+ .+++..+.. .|+-+.+..+..+++... +......+|..... .|++.+|+..++++... .+.
T Consensus 65 ~d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-----~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 65 EDLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-----NGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred chHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHH-----hcchHHHHHHHHHHhccCCCCh
Confidence 55566 777777776 778888888888866544 44556557887776 57999999999999876 688
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+++..+|.+|.+ .+++++|..-|.++++. +.+....|+|+.|.- .+|++.|..++..+....+ ...--
T Consensus 135 ~~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 135 EAWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hhhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 999999999999 99999999999999987 789999999999997 9999999999999988764 55667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWI 465 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~ 465 (525)
+++.+.-..|++++|.....+-+.. +.+.+++.++
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~~~--~~~~~~~~~l 241 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQELLS--EQAANNVAAL 241 (257)
T ss_pred HHHHHHhhcCChHHHHhhccccccc--hhHhhHHHHH
Confidence 9999999999999998776544433 3333444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.5e-07 Score=74.56 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 158 ~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
...+..+.+|..+...|++++|.+.|+.+.. .
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------------------------------------~ 64 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------------------------------------Y 64 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------------h
Confidence 3457788888888888999998888887754 4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
++.+++.+++||.++... +++++|+..|.+|+.. ++|.+++++|.++.. .|+.+.|++.|+.++...
T Consensus 65 Dp~~~~y~~gLG~~~Q~~-----g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~----lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 65 DAWSFDYWFRLGECCQAQ-----KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA----CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CcccHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence 667788999999999777 4999999999998764 788999999999998 899999999999987764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.1e-06 Score=73.87 Aligned_cols=156 Identities=14% Similarity=0.032 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+.++ .++...+.. .|+-+.+..+..++.... +......+|..... .+++..|+..+.+++.. .+++
T Consensus 66 d~~i-~~~a~a~~~-----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~----~g~~~~A~~~~rkA~~l~p~d~~ 135 (257)
T COG5010 66 DLSI-AKLATALYL-----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR----NGNFGEAVSVLRKAARLAPTDWE 135 (257)
T ss_pred hHHH-HHHHHHHHh-----cccccchHHHHhhhhccCcccHHHHHHHHHHHHH----hcchHHHHHHHHHHhccCCCChh
Confidence 4555 666666654 346677777777766553 44466669999999 99999999999999987 7899
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
++.-+|.+|.. .|+++.|..-|.++++.. .+.+..++|..++..||++.|..++..+... .+..+-.|++.+
T Consensus 136 ~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~ 211 (257)
T COG5010 136 AWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALV 211 (257)
T ss_pred hhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999998 999999999999999885 5788999999999999999999999999877 478888899998
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
... ++++.+|.+.-.+-+
T Consensus 212 ~~~----------------~g~~~~A~~i~~~e~ 229 (257)
T COG5010 212 VGL----------------QGDFREAEDIAVQEL 229 (257)
T ss_pred Hhh----------------cCChHHHHhhccccc
Confidence 877 556677766555433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-05 Score=79.51 Aligned_cols=268 Identities=14% Similarity=0.107 Sum_probs=158.0
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc----------------------CCCHHHHHHHHHHHhccccHHHHHH
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----------------------GGNIQSKMAVAYTYLRQDMHDKAVK 181 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~----------------------~~~~~a~~~la~~y~~~~~~~~A~~ 181 (525)
...+|..+.-... .+|.+.|+++|+|+-. ..+..-+.-.|......|+.+-|+.
T Consensus 858 r~Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hhhHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence 3445666665555 7899999999999732 1233445556777788899999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 009801 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 182 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
+|..+.+ +.+...+...+|+.++|-++ +-+.++..|+|.||+.|...+
T Consensus 934 ~Y~~A~D------------------------~fs~VrI~C~qGk~~kAa~i---A~esgd~AAcYhlaR~YEn~g----- 981 (1416)
T KOG3617|consen 934 FYSSAKD------------------------YFSMVRIKCIQGKTDKAARI---AEESGDKAACYHLARMYENDG----- 981 (1416)
T ss_pred HHHHhhh------------------------hhhheeeEeeccCchHHHHH---HHhcccHHHHHHHHHHhhhhH-----
Confidence 9998854 34555667788999998766 345689999999999998884
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HcCCHHHHHH----HHHHHH
Q 009801 262 DRTKALMWFSKAADK----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA-RQQLYSAYNG----IGYLYV 326 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~----lg~~~~ 326 (525)
+..+|+.+|.+|-.. +-.+-+.+|+.+-. ..|.-.|-.||+..- ....+.-++. ++..+.
T Consensus 982 ~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~-----~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSG-----GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC-----chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 999999999987432 22223333333211 345555555555421 0001100000 111111
Q ss_pred hCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCc
Q 009801 327 KGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 327 ~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~ 405 (525)
..+. . +--.|++..-+-++. .+|..+..-++.+.. ..+|++|++.+-.+-+.. -.|+.+...+..+.
T Consensus 1057 lAF~--t-qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~----~~qyekAV~lL~~ar~~~-----~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1057 LAFR--T-QQFSALDLIAKDLDAGSDPKLLRRCADFFEN----NQQYEKAVNLLCLAREFS-----GALQLCKNRNVRVT 1124 (1416)
T ss_pred HHHh--h-cccHHHHHHHHhcCCCCCHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHH-----HHHHHHhcCCCchh
Confidence 0000 0 112334433333333 477778888888888 888999988776554321 12344443322211
Q ss_pred CCHHHHHHHHHHH-HHc-C-C-----hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 406 KNLHMATALYKLV-AER-G-P-----WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 406 ~~~~~A~~~~~~a-~~~-~-~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
. ++-+.. ... + + ...+..+|....++|.|-.|-+-|.+|
T Consensus 1125 e------e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 E------EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred H------HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1 111111 011 1 1 234567888899999998888888766
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.5e-06 Score=74.53 Aligned_cols=174 Identities=11% Similarity=0.006 Sum_probs=117.6
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHH---HHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHA---RSVLGFLYGMGMMRERNKGKAFLYHHFAAEG- 157 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a---~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 157 (525)
.++..|..|...+. .+++++|+..|++.. .|+.+.+ .+.+|.+|.. .+++++|+.+|++.++.
T Consensus 31 ~~~~~Y~~A~~~~~-------~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQ-------DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Confidence 36667888888876 789999999999954 5555444 4899999999 99999999999999874
Q ss_pred ----CCHHHHHHHHHHHhccc------------------cHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhh
Q 009801 158 ----GNIQSKMAVAYTYLRQD------------------MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEEN 215 (525)
Q Consensus 158 ----~~~~a~~~la~~y~~~~------------------~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (525)
..+.+++.+|.++...+ ...+|+..|+++++.-|++.-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------------- 159 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------------- 159 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh--------------------
Confidence 34678899998753322 134677888888776554311
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYA 290 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~ 290 (525)
..+|...+.. +...-+.--+.+|..|.+.+ ++.-|+.-++..++. ...++++.+...|.
T Consensus 160 ----------a~~A~~rl~~-l~~~la~~e~~ia~~Y~~~~-----~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 160 ----------TTDATKRLVF-LKDRLAKYELSVAEYYTKRG-----AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR 223 (243)
T ss_pred ----------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC-----chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 1122222111 11122333456777777763 777788888887764 23567777777777
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 009801 291 RGAGVERNYTKALEWLTH 308 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~ 308 (525)
. .|..++|..+...
T Consensus 224 ~----lg~~~~a~~~~~~ 237 (243)
T PRK10866 224 Q----LQLNAQADKVAKI 237 (243)
T ss_pred H----cCChHHHHHHHHH
Confidence 7 7777777665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-06 Score=73.03 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 427 (525)
-+..+.+|..+.. .+++++|...|+..+.. .+...+++||.++.. .+++++|+..|.+|+.++ ++.++
T Consensus 35 l~~lY~~A~~ly~----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 35 LNTLYRYAMQLME----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456777777777 88888888888887766 467778888888887 888888888888887775 57788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++|.++...|+.+.|+..|+.|+..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0006 Score=68.07 Aligned_cols=221 Identities=10% Similarity=0.068 Sum_probs=153.6
Q ss_pred cCHHHHHHHHHHHHhc-------CC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHH
Q 009801 261 RDRTKALMWFSKAADK-------GE-PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL------YSAYNGIGYLYV 326 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~-------~~-~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~ 326 (525)
++..+-+..|..|+.. |. ...+..+|.+|.. .++.+.|...|++|...+. +..+..-|.+-.
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 4788888888888865 22 3577889999998 8999999999999987652 445566665554
Q ss_pred hCCCCCccCHHHHHHHHHHHHhCC--------------------ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-
Q 009801 327 KGYGVEKKNYTKAKEYFEKAADNE--------------------EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA- 385 (525)
Q Consensus 327 ~g~~~~~~~~~~A~~~~~~a~~~~--------------------~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~- 385 (525)
. ..+++.|+++.++|...- ....|..++++-.. .+-++.-...|.+.+++
T Consensus 437 r-----h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 437 R-----HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLR 507 (835)
T ss_pred h-----hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHh
Confidence 4 348999999999887431 23345566777777 78888888889988877
Q ss_pred -CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH-------HHHHHHHhcCCHHHHHHHHHHHHHcChHH
Q 009801 386 -GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS-------RWALESYLKGDVGKAFLLYSRMAELGYEV 457 (525)
Q Consensus 386 -~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 457 (525)
-.|....|.|+.++. ..-+++|.+.|++.+.+-++...+ .....-+.--..+.|...|++|++.-++.
T Consensus 508 iaTPqii~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE 583 (835)
T ss_pred cCCHHHHHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence 577888888998887 788899999999998886432222 22222233348899999999999863333
Q ss_pred HH----HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009801 458 AQ----SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAY 514 (525)
Q Consensus 458 a~----~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 514 (525)
.. ..+|.+-.. .|--..|+..|++|...-+.+-.+.+=++|
T Consensus 584 ~aKtiyLlYA~lEEe----------------~GLar~amsiyerat~~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEE----------------HGLARHAMSIYERATSAVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 223333333 223467888899888766666555555555
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-05 Score=71.33 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhH
Q 009801 141 ERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGA 218 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (525)
.+...-|...+++.-+ +|.....-.-|+++...+.+++|+++|+.+++.+|.+... ...+-.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~----------------~KRKlA 128 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI----------------RKRKLA 128 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH----------------HHHHHH
Confidence 3466677777776544 3666777777788888888888888888777654433211 122333
Q ss_pred hhhccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCC
Q 009801 219 LRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA--DKGEPQSMEFLGEIYARGAG 294 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~~ 294 (525)
+...+|+..+||+.+..-.+. +|++++..|+.+|... +++++|.-+|++.+ .+-++..+..+|.+++.-.|
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-----~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-----GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 344444444555444444443 4455555555555444 25555555555433 22333444444444433111
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 009801 295 VERNYTKALEWLTHAARQ 312 (525)
Q Consensus 295 ~~~~~~~A~~~~~~a~~~ 312 (525)
..+..-|.++|.++++.
T Consensus 204 -~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 204 -AENLELARKYYERALKL 220 (289)
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 22444444444444444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-06 Score=66.90 Aligned_cols=94 Identities=21% Similarity=0.104 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC---
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--- 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--- 423 (525)
|.+.|.+|+++.. .|+.++|+.+|++++..+ ...++..+|..+.. .|++++|+.++++++...|
T Consensus 1 ~~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcc
Confidence 4678999999999 999999999999999874 24578889999998 9999999999999987743
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 --WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 --~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
......++.+++..|+.++|+.++-.++..
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345567888999999999999999877753
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-05 Score=69.52 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--- 349 (525)
.++.+|+.-+.. .-++.+++.+-+..+... -..+...+|..+.. .+-+++++++|+.|.+.
T Consensus 84 ea~lnlar~~e~----l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-----ls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 84 EAYLNLARSNEK----LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-----LSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHH----HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-----HHHHHHHHHHHHHHHHHhhc
Confidence 466677777776 667777777777766542 11233445555543 34788999999998754
Q ss_pred -CCh----hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 350 -EEA----GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA------GH------QKAFYQLAKMFHTGVGLKKNLHMAT 412 (525)
Q Consensus 350 -~~~----~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~------~~a~~~l~~~y~~g~g~~~~~~~A~ 412 (525)
+|+ ..+..||.++.. .+|+++|.-+..+|.++ ++ .-++++++..+.. .|..-.|.
T Consensus 155 ~~D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~----~G~LgdA~ 226 (518)
T KOG1941|consen 155 NDDAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL----LGRLGDAM 226 (518)
T ss_pred cCCceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH----hcccccHH
Confidence 333 467889999999 99999999999998865 22 3467788888886 78888888
Q ss_pred HHHHHHHHc----CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cChHHHHHHHHHHHhhhCCCcccc
Q 009801 413 ALYKLVAER----GP----WSSLSRWALESYLKGDVGKAFLLYSRMAE--------LGYEVAQSNAAWILDKYGEGSMCM 476 (525)
Q Consensus 413 ~~~~~a~~~----~~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~--------~~~~~a~~~la~~~~~~~~~~~~~ 476 (525)
++.+.|.++ ++ .....-+|.+|...|+.+.|+.-|++|.. +|...++.-.|.++..
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~-------- 298 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET-------- 298 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--------
Confidence 888887544 43 44566889999999999999999999963 3456677777777765
Q ss_pred CCCCCCCChHhHH-----HHHHHHHHHHhC----CC----HHHHHHHHHHHHccccc
Q 009801 477 GESGFCTDAERHQ-----CAHSLWWQASEQ----GN----EHAALLIGDAYYYGRVR 520 (525)
Q Consensus 477 ~~~~~~~~~~~~~-----~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~g~ 520 (525)
..-.. .|+++-++.++. |. -..+-+|+.+|. ..|.
T Consensus 299 --------~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYr-s~gl 346 (518)
T KOG1941|consen 299 --------LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR-SKGL 346 (518)
T ss_pred --------HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-hccc
Confidence 22222 377776666653 32 345567888885 4443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.7e-05 Score=65.36 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhH--H-HHHHHHHHcCCCCcC
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG--H-YNLGVMYYKGIGVKR 370 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a--~-~~lg~~y~~g~~~~~ 370 (525)
.++..-|..++++.-.. ++......-|..+.. .+++++|+++|...++.+..+. + -.++.+-. ++
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa-----~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka-----~G 134 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA-----TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA-----QG 134 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-----hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH-----cC
Confidence 56777888888775443 344555555555654 5699999999999987753322 2 23555444 45
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcC---CHHHH
Q 009801 371 DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKG---DVGKA 443 (525)
Q Consensus 371 ~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~l~~~~~~~g---~~~~A 443 (525)
...+|++-+..-++. ++.++|..++.+|.. .+++++|.-+|++.+-..|.+ .+-++|.++|-+| ++.-|
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 556888888887776 899999999999998 999999999999999888744 3448899888877 78889
Q ss_pred HHHHHHHHHcChHHHHHHHHHH
Q 009801 444 FLLYSRMAELGYEVAQSNAAWI 465 (525)
Q Consensus 444 ~~~~~~a~~~~~~~a~~~la~~ 465 (525)
.++|.+|++.......-.+|.+
T Consensus 211 rkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHHH
Confidence 9999999988543333333333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-05 Score=70.06 Aligned_cols=188 Identities=20% Similarity=0.106 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-- 312 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 312 (525)
.+...+|..+... .-++++++.|++|.+. +++ .++..||.+|-. .+|+++|+-+..+|++.
T Consensus 123 q~~l~~~~Ahlgl-----s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 123 QVSLSMGNAHLGL-----SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVN 193 (518)
T ss_pred hhhhhHHHHhhhH-----HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHH
Confidence 3445566666555 4789999999998864 333 578889999988 89999999999998764
Q ss_pred ----CC------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH----hCCCh----hHHHHHHHHHHcCCCCcCCHHH
Q 009801 313 ----QL------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA----DNEEA----GGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 313 ----~~------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~----~~~~~----~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
++ ..+++.++..+.. +|..-.|.++.++|. ..|+- ....-+|++|.. .++.+.
T Consensus 194 s~~l~d~~~kyr~~~lyhmaValR~-----~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~ 264 (518)
T KOG1941|consen 194 SYGLKDWSLKYRAMSLYHMAVALRL-----LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLER 264 (518)
T ss_pred hcCcCchhHHHHHHHHHHHHHHHHH-----hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhH
Confidence 22 3456677777765 456666777776664 44553 455679999999 999999
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCH-----HHHHHHHHHHHHcCC--------hHHHHHHHHH
Q 009801 375 ACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNL-----HMATALYKLVAERGP--------WSSLSRWALE 433 (525)
Q Consensus 375 A~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~-----~~A~~~~~~a~~~~~--------~~a~~~l~~~ 433 (525)
|..-|+.|... +..+++...+.+... .+-. -.|++.-++.++... -..+.+++.+
T Consensus 265 af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~----~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~i 340 (518)
T KOG1941|consen 265 AFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET----LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASI 340 (518)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999998632 455666666666654 3323 348888777776532 3456789999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009801 434 SYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~ 452 (525)
|..+|.-++=...+.+|-+
T Consensus 341 Yrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 341 YRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHhccchhHHHHHHHHHHH
Confidence 9899877777666666544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-06 Score=81.73 Aligned_cols=105 Identities=15% Similarity=0.019 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWA 431 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 431 (525)
...|..... .+++.+|+..|+++++. +++.++.++|.++.. .+++++|+..++++++.++ ..+++++|
T Consensus 6 ~~~a~~a~~----~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 6 EDKAKEAFV----DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 344566666 78888888888888876 567788888888887 7888888888888888764 66778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 432 LESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
.+++.+|++++|+..|+++++. +++.+...++.+...
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888876 467777777777655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-06 Score=82.08 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
...|..... .+++++|+..|+++++.++ ..+++.+|.++...|++++|+..++++++. .++.+++++|.++.
T Consensus 6 ~~~a~~a~~----~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 6 EDKAKEAFV----DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 344555555 8999999999999999975 778899999999999999999999999987 57889999999999
Q ss_pred hhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 468 KYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
. .+++++|+.+|+++++.+ ++.+...++.|..
T Consensus 82 ~----------------lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 82 K----------------LEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred H----------------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8 778999999999999875 7888888888744
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-06 Score=73.87 Aligned_cols=118 Identities=19% Similarity=0.070 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQS 460 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~ 460 (525)
..+++.+|.++.. .+++++|+.+|++++...+ +.++.++|.++...|++++|+.++++++.. .+..++.
T Consensus 35 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 4455666666665 6777777777777765531 236667777777777777777777777655 3556677
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCC---HHHHHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN---EHAALLIG 511 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg 511 (525)
++|.++...|.....+|. .......+++|+.+|++++.... .++...++
T Consensus 111 ~la~i~~~~~~~~~~~g~--~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGD--SEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHHHhhHHHHHccc--HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 777777654433222221 01112345677777777776654 44444444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00019 Score=66.44 Aligned_cols=259 Identities=12% Similarity=0.083 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhh
Q 009801 141 ERNKGKAFLYHHFAAEGGN---IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~---~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
..|+.-|+.+++-..+.+. ......+|.++...|+|++|+..|.-+.+.+... .....+++
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~----------------~el~vnLA 98 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP----------------AELGVNLA 98 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC----------------cccchhHH
Confidence 5688999999988876553 3567889999999999999999999876532211 23355677
Q ss_pred HhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 009801 218 ALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~ 296 (525)
..+...|.+.+|.+.-.++.+. -...-++.|+.-. +.++-+..|...+.- ..+-...|+.+... .
T Consensus 99 cc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl---------ndEk~~~~fh~~LqD-~~EdqLSLAsvhYm----R 164 (557)
T KOG3785|consen 99 CCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL---------NDEKRILTFHSSLQD-TLEDQLSLASVHYM----R 164 (557)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh---------CcHHHHHHHHHHHhh-hHHHHHhHHHHHHH----H
Confidence 7778888888888776664332 1233444444433 334444444444432 23445666777665 5
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCC-----
Q 009801 297 RNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIG----- 367 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~----- 367 (525)
-.|.+|+..|++.+..+ .......++.+|.. .+-++-+-+.+.--+.+ +.+-|....+....+-..
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-----lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-----LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-----cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 68999999999998654 34445677888765 32445555554444433 233344433333333100
Q ss_pred ---------CcCCHHHHHHHHHH----------HHH------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 368 ---------VKRDVKLACKYFLV----------AAN------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 368 ---------~~~~~~~A~~~~~~----------a~~------~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
....++.+....+- |++ .--|+|..+|...|.+ ++|.++|+...+ +.+
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~----q~dVqeA~~L~K---dl~ 312 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN----QNDVQEAISLCK---DLD 312 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc----cccHHHHHHHHh---hcC
Confidence 01111111111110 111 1247888999988987 999999998877 555
Q ss_pred C--hHHHHHHHHHHHhcCCHH
Q 009801 423 P--WSSLSRWALESYLKGDVG 441 (525)
Q Consensus 423 ~--~~a~~~l~~~~~~~g~~~ 441 (525)
| +.-+..-|.+....|+-.
T Consensus 313 PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 313 PTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred CCChHHHHHHHHHHHHhhhhc
Confidence 4 333445566666666433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0014 Score=65.54 Aligned_cols=225 Identities=13% Similarity=0.106 Sum_probs=153.7
Q ss_pred hHhhhccCCcHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC------HHHH
Q 009801 217 GALRKSRGEDDEAFQILEYQAQKGN--------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE------PQSM 282 (525)
Q Consensus 217 ~~~~~~~~~~~~A~~~~~~~~~~~~--------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~ 282 (525)
..+....++..+-+..|..++..-+ ...+..+|..|...+ +.+.|...|++|.+... +.+|
T Consensus 354 kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~-----~l~~aRvifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 354 KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG-----DLDDARVIFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC-----cHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 3445567788888888888865533 246778999999884 99999999999998643 5678
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHH----HHHHh-CCCCCccCHHHHHHHHHHHH
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLY----------SAYNGIG----YLYVK-GYGVEKKNYTKAKEYFEKAA 347 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~----------~a~~~lg----~~~~~-g~~~~~~~~~~A~~~~~~a~ 347 (525)
...|.+=.. ..+++.|+.+.++|...+.. .++..|- .+-.. ...-.-|-++.-...|.+.+
T Consensus 429 ~~waemElr----h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 429 CAWAEMELR----HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHh----hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888777 78999999999999765311 1121111 11111 00000224455556677777
Q ss_pred hC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cCCCCcCCHHHHHHHHHHHHHc
Q 009801 348 DN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFH----TGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 348 ~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~----~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+. -.|....|.|+.+.. ..-++++.+.|++.+.+-..+..+.+-..|. ...| ....+.|...|++|++.
T Consensus 505 dLriaTPqii~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERARDLFEQALDG 579 (835)
T ss_pred HHhcCCHHHHHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc
Confidence 66 688899999999999 8999999999999988722222222222221 1111 56799999999999997
Q ss_pred CChHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 422 GPWSS----LSRWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 422 ~~~~a----~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
-|+.. +...+..--.-|--..|+..|++|...-.
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 66543 23445555566888999999999987643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.6e-05 Score=69.46 Aligned_cols=205 Identities=17% Similarity=0.171 Sum_probs=147.3
Q ss_pred hccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHH--HHHHHcCCCCC
Q 009801 221 KSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL--GEIYARGAGVE 296 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L--g~~y~~g~~~~ 296 (525)
....++..||+++..-.+. .+-.++..||.+|+.. +++.+|..+|++....-...+.+.+ ++.+.+ .
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-----Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~----A 91 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL-----QEFALAAECYEQLGQLHPELEQYRLYQAQSLYK----A 91 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH----h
Confidence 4566889999998876544 4677899999999988 6999999999998876554444433 333444 5
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHH
Q 009801 297 RNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVK 373 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~ 373 (525)
+.+..|+.......+.. +......-+..|. .+|..-+..+.++....++++...+.|.+..+ .++++
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs------e~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyE 161 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYS------EGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYE 161 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc------cccCcchHHHHHhccCCCccchhccchheeec----cccHH
Confidence 67777877766654432 1112233333343 34777777777777777888889999998888 89999
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C------------------------
Q 009801 374 LACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P------------------------ 423 (525)
Q Consensus 374 ~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~------------------------ 423 (525)
.|++-|..|++.+ .+...++++.+... .++++.|+++....++.| |
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999888873 56677888888887 889999999888887653 1
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHH
Q 009801 424 ---WSSLSRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~~~~A~~~~~ 448 (525)
.++...-+-++++.|+++.|.+.+.
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 1233344567888889888887764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0028 Score=61.30 Aligned_cols=208 Identities=12% Similarity=0.041 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH---------HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHh
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS---------AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD 348 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~---------a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~ 348 (525)
|-++++..-.+-.. .|+.+.-.+.|++|+..-.+. .+.-+-.+++.- ...+|.+.+.+.|+.+++
T Consensus 321 nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE--le~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 321 NYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE--LEAEDVERTRQVYQACLD 394 (677)
T ss_pred CchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHh
Confidence 34566666666666 678888888888887653221 111122222210 123488888888888887
Q ss_pred C------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 349 N------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQ-LAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 349 ~------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~-l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
. ..+..+...+..-.+ +.+...|.+.+-.|+-+-...-.+. .-.+-. ..++++.....|++-++-
T Consensus 395 lIPHkkFtFaKiWlmyA~feIR----q~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl----qL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIR----QLNLTGARKILGNAIGKCPKDKLFKGYIELEL----QLREFDRCRKLYEKFLEF 466 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHH----HcccHHHHHHHHHHhccCCchhHHHHHHHHHH----HHhhHHHHHHHHHHHHhc
Confidence 5 234556666666667 7788888888877775522111111 011111 257899999999999999
Q ss_pred CChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 422 GPWS--SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 422 ~~~~--a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
+|.+ ++...|.+-..+|+.+.|...|+-|+.+...+...-|=..| ..+.+..+.+++|...|++-+
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY------------IdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY------------IDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh------------hhhhhhcchHHHHHHHHHHHH
Confidence 9865 45566777778999999999999999885322222222222 123344778999999999999
Q ss_pred hCC-CHHHHHHHH
Q 009801 500 EQG-NEHAALLIG 511 (525)
Q Consensus 500 ~~~-~~~a~~~lg 511 (525)
+.. |...+...+
T Consensus 535 ~rt~h~kvWisFA 547 (677)
T KOG1915|consen 535 DRTQHVKVWISFA 547 (677)
T ss_pred HhcccchHHHhHH
Confidence 865 544444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=62.89 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG-DVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 453 (525)
+..+..+|.++.. .+++++|+.+|+++++.+| +.+++++|.++..+| ++++|+..++++++.
T Consensus 3 a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4445555555554 5555555555555555543 344555555555555 455555555555543
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-05 Score=69.84 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (525)
.+.+++.+|..+.. .+++++|+.+|+++++.. ...++.++|.++.. .+++++|+.++++++...+
T Consensus 34 ~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccc
Confidence 34455666666666 666666666666665431 13455566666655 5666666666666665542
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
..++..+|.++...|+...+...+++|
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHH
Confidence 444555566666666555555444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=75.81 Aligned_cols=133 Identities=12% Similarity=0.058 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 009801 111 ATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAE 188 (525)
Q Consensus 111 A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~ 188 (525)
+..++-+..+++...++|..+..+.. .++++.|.+.+...+. ++|+..+...+.++...++.++|++.+++++.
T Consensus 293 ~~~~~~~~~~~~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 293 AADLLAKRSKRGGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred hHHHHHHHhCccchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 33444444457888899999988887 8889999999987654 58888889999999999999999999999876
Q ss_pred HHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHH
Q 009801 189 IAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALM 268 (525)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~ 268 (525)
.. |+.+....++|..+..++ ++++|+.
T Consensus 369 l~------------------------------------------------P~~~~l~~~~a~all~~g-----~~~eai~ 395 (484)
T COG4783 369 LD------------------------------------------------PNSPLLQLNLAQALLKGG-----KPQEAIR 395 (484)
T ss_pred cC------------------------------------------------CCccHHHHHHHHHHHhcC-----ChHHHHH
Confidence 43 333445566666666663 6666666
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 009801 269 WFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALE 304 (525)
Q Consensus 269 ~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~ 304 (525)
.++..+.. .++..|..|+..|.. .|+..+|..
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~----~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAE----LGNRAEALL 429 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHH----hCchHHHHH
Confidence 66665543 556666666666666 665555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.1e-06 Score=63.87 Aligned_cols=77 Identities=21% Similarity=0.109 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCC
Q 009801 405 KKNLHMATALYKLVAERGPW----SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGE 478 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~~----~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~ 478 (525)
.+++++|+.+++++++..+. ..++.+|.+++..|++++|+.++++ .+. .+...++.+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~---------- 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK---------- 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH----------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH----------
Confidence 35666666666666666541 2344556667777777777766666 322 345566666666666
Q ss_pred CCCCCChHhHHHHHHHHHHH
Q 009801 479 SGFCTDAERHQCAHSLWWQA 498 (525)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~a 498 (525)
.+++++|+..|++|
T Consensus 71 ------l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 ------LGKYEEAIKALEKA 84 (84)
T ss_dssp ------TT-HHHHHHHHHHH
T ss_pred ------hCCHHHHHHHHhcC
Confidence 55666676666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=64.80 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC---
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--- 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--- 423 (525)
++.++.+|..+.. .+++++|+..|+++++.. + +.+++.+|.++.. .+++++|+.+|++++...|
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCC
Confidence 4566777777777 788888888887777652 2 4577778888776 7788888888888776542
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 --WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 --~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.+++.+|.++...|++++|+.+++++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 356777788888888888888888877766
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=61.12 Aligned_cols=65 Identities=25% Similarity=0.440 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcC-CHHHHHHHHHHHHHcCC
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKK-NLHMATALYKLVAERGP 423 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~-~~~~A~~~~~~a~~~~~ 423 (525)
++.++..+|.++.. .+++++|+.+|+++++. +++.+++++|.++.. .+ ++++|++.++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHcCc
Confidence 67899999999999 99999999999999988 678999999999998 77 79999999999998875
|
... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.6e-06 Score=78.02 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGI 321 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 321 (525)
+-.....|.++... +++++|++.+.+. ++.++....-.+|.. .++++.|.+.++..-+.+.-....+|
T Consensus 102 ~~~~~~~A~i~~~~-----~~~~~AL~~l~~~---~~lE~~al~Vqi~L~----~~R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 102 EIVQLLAATILFHE-----GDYEEALKLLHKG---GSLELLALAVQILLK----MNRPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp HHHHHHHHHHHCCC-----CHHHHHHCCCTTT---TCHHHHHHHHHHHHH----TT-HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHcc---CcccHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33445555666444 4777777776654 556666666667776 77777777777776655544555555
Q ss_pred HHHHHhC-CCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 009801 322 GYLYVKG-YGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAK 396 (525)
Q Consensus 322 g~~~~~g-~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~ 396 (525)
+..|..- .| .+++.+|...|+...+. .++..++.++.+... ++++++|...++.+++. +++..+.++..
T Consensus 170 a~awv~l~~g--~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 170 AEAWVNLATG--GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHhC--chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 5544320 01 13566777777776655 345556667777777 77777777777776654 56667777766
Q ss_pred HHHcCCCCcCCH-HHHHHHHHHHHHcCC
Q 009801 397 MFHTGVGLKKNL-HMATALYKLVAERGP 423 (525)
Q Consensus 397 ~y~~g~g~~~~~-~~A~~~~~~a~~~~~ 423 (525)
+... .|+. +.+.+++.+.....|
T Consensus 244 ~~~~----~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 244 CSLH----LGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHH----TT-TCHHHHHHHHHCHHHTT
T ss_pred HHHH----hCCChhHHHHHHHHHHHhCC
Confidence 6555 3443 445555555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-05 Score=65.10 Aligned_cols=75 Identities=19% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-ChHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL-GYEVAQSNAA 463 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~a~~~la 463 (525)
+...++.++.. .+++++|+..|+.+++..+ +.+.++++.++...|++++|+..++..... -.+.+....|
T Consensus 50 A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 50 AALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHH
Confidence 44444555554 5555555555555555432 224445555555555555555555443221 1333444455
Q ss_pred HHHhh
Q 009801 464 WILDK 468 (525)
Q Consensus 464 ~~~~~ 468 (525)
.++..
T Consensus 126 di~~~ 130 (145)
T PF09976_consen 126 DIYLA 130 (145)
T ss_pred HHHHH
Confidence 55544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-05 Score=68.47 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHcCCCCc
Q 009801 335 NYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G---HQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~l~~~y~~g~g~~ 405 (525)
++..+...+...++. ..+.+++.+|.++.. .+++++|+.+|++++.. + .+.++.++|.++.. .
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----~ 85 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----N 85 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH----c
Confidence 455555555444333 134566778888887 78888888888888765 2 23477888888887 7
Q ss_pred CCHHHHHHHHHHHHHcCC--hHHHHHHHHHHH-------hcCCHHHHHHHHHHHH
Q 009801 406 KNLHMATALYKLVAERGP--WSSLSRWALESY-------LKGDVGKAFLLYSRMA 451 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~-------~~g~~~~A~~~~~~a~ 451 (525)
+++++|+.+|++++...+ ..++..+|.++. ..|++++|+.++++++
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888888888888887753 455666677666 7777776666666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-05 Score=67.97 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G 386 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~ 386 (525)
.+.+++.+|..+.. .+++++|+.+|+++++.. .+.++..+|.++.. .+++++|+.+|+++++. .
T Consensus 34 ~a~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 34 EAFVYYRDGMSAQA-----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcc
Confidence 56788999999987 789999999999999652 24689999999999 99999999999999987 6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+..++..+|.++.. .++...+...+.+++. .+++|+..+++++..+
T Consensus 105 ~~~~~~~lg~~~~~----~g~~~~a~~~~~~A~~------------------~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 105 QPSALNNIAVIYHK----RGEKAEEAGDQDEAEA------------------LFDKAAEYWKQAIRLA 150 (172)
T ss_pred cHHHHHHHHHHHHH----cCChHhHhhCHHHHHH------------------HHHHHHHHHHHHHhhC
Confidence 78888999999987 6776666655555442 2566777777777664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=72.37 Aligned_cols=98 Identities=20% Similarity=0.151 Sum_probs=68.5
Q ss_pred ccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCH
Q 009801 333 KKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNL 408 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~ 408 (525)
.++|++|+..|.+|++.+ ++.-+.+-+-+|.+ .+.++.|++-.+.|+..+ +..++-+||.+|.. .+++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~----~gk~ 165 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA----LGKY 165 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc----cCcH
Confidence 457888888888887774 55566677778887 788888888888777774 56677778888876 7788
Q ss_pred HHHHHHHHHHHHcCChHH--HHHHHHHHHhcC
Q 009801 409 HMATALYKLVAERGPWSS--LSRWALESYLKG 438 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a--~~~l~~~~~~~g 438 (525)
++|++.|++|++++|.+. ..+|.++-...+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 888888888887775333 234444443333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-05 Score=72.62 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+.+-.=|.-... .++|.+|+..|.+|+++ .++.-+.+-+.+|.. .+.++.|++-.+.|+..++ ..+|.
T Consensus 82 E~LK~eGN~~m~----~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 82 ESLKNEGNKLMK----NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHHHHHHHHHhcChHHHHHHH
Confidence 334455666666 88999999999999988 467777788888887 8999999999999999985 67889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
+||.+|+.+|++++|++.|++|++. .+.....+|.+.-..
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999887 456555666655544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-05 Score=73.97 Aligned_cols=210 Identities=14% Similarity=0.070 Sum_probs=108.5
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~~~ 295 (525)
+...|+++..+....... .....+...++..+... .+.+.++.-++..+.. .++......|.++..
T Consensus 45 ~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~-----~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~---- 114 (290)
T PF04733_consen 45 YIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSP-----SDKESALEELKELLADQAGESNEIVQLLAATILFH---- 114 (290)
T ss_dssp HHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTS-----TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC----
T ss_pred HHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH----
Confidence 344555554444433322 22233444455444221 2445555554443322 123344455566665
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
.+++++|++.+.+. ++.++....-.++.. .++++.|.+.++..-+.++......|+..+..-......+++|
T Consensus 115 ~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~-----~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 115 EGDYEEALKLLHKG---GSLELLALAVQILLK-----MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCHHHHHHCCCTTT---TCHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred cCCHHHHHHHHHcc---CcccHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 67777777666654 455555555555554 3467777777777666655555555544332210002456677
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009801 376 CKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDV-GKAFLLYSRM 450 (525)
Q Consensus 376 ~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~-~~A~~~~~~a 450 (525)
...|+...+. ..+..++.++.+... .+++++|...++++++.++ ++...++..+....|+. +.+.+++.+.
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7777765554 345555666666665 6777777777777765543 55556666666666665 3344444443
Q ss_pred H
Q 009801 451 A 451 (525)
Q Consensus 451 ~ 451 (525)
.
T Consensus 263 ~ 263 (290)
T PF04733_consen 263 K 263 (290)
T ss_dssp H
T ss_pred H
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-05 Score=66.38 Aligned_cols=110 Identities=17% Similarity=0.097 Sum_probs=82.4
Q ss_pred cCHHHHHHHHHHHHhCC--C---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCC
Q 009801 334 KNYTKAKEYFEKAADNE--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-H----QKAFYQLAKMFHTGVG 403 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~l~~~y~~g~g 403 (525)
++..++...+++.++.. . ..+.+.+|.++.. .+++++|...|+.+++.. + +.+..+|+.++..
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~--- 97 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ--- 97 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---
Confidence 36667766666666542 2 3456778888888 899999999998888763 2 3477788888887
Q ss_pred CcCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 404 LKKNLHMATALYKLVAERG-PWSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
.+++++|+..++...... .+.+...+|.++..+|++++|+..|++|+
T Consensus 98 -~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 -QGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 889999999987643322 35566788999999999999999998874
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-05 Score=62.90 Aligned_cols=94 Identities=20% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C---hHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--G---YEVA 458 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~---~~~a 458 (525)
.+.++++.++.. .|+.++|+.+|+++++.+. ..++..+|..+...|++++|+..+++++.. + +...
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 578899999998 9999999999999999863 457889999999999999999999999876 3 4567
Q ss_pred HHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 459 ~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
...++.++.+ .+++++|+.++-.++-..
T Consensus 78 ~~f~Al~L~~----------------~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 78 RVFLALALYN----------------LGRPKEALEWLLEALAET 105 (120)
T ss_pred HHHHHHHHHH----------------CCCHHHHHHHHHHHHHHH
Confidence 7778888887 678899999999887544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=61.23 Aligned_cols=92 Identities=27% Similarity=0.366 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
+++.+|.++.. .+++++|+.+++++++. .+..++..+|.++.. .+++++|+.++++++...+ ...+..
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 46677777777 77888888888877765 344677777877776 6788888888888877653 346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|.++...|++++|..+++++.+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 788888888888888888777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0002 Score=65.91 Aligned_cols=178 Identities=14% Similarity=0.028 Sum_probs=117.1
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNI---QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~---~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~ 198 (525)
+...|..|..+.. .+++++|++.|++.... +.. .+.+.+|.+|.+.+++++|+..|++.++..|.+
T Consensus 32 ~~~~Y~~A~~~~~----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~----- 102 (243)
T PRK10866 32 PSEIYATAQQKLQ----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH----- 102 (243)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-----
Confidence 3444555555555 78999999999998764 333 556999999999999999999999998875543
Q ss_pred CCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------CCCccC---HHH
Q 009801 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGL----------RGLRRD---RTK 265 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~----------~~~~~~---~~~ 265 (525)
+..+.+++.+|.++...+ .....| ..+
T Consensus 103 ----------------------------------------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~ 142 (243)
T PRK10866 103 ----------------------------------------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARA 142 (243)
T ss_pred ----------------------------------------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHH
Confidence 234678888887753331 011122 245
Q ss_pred HHHHHHHHHhc--CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHH
Q 009801 266 ALMWFSKAADK--GEP---QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (525)
Q Consensus 266 A~~~~~~a~~~--~~~---~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~ 340 (525)
|+..|++.++. +.. .+...|..+.. .-+.--..+|..|.. .+++..|+
T Consensus 143 A~~~~~~li~~yP~S~ya~~A~~rl~~l~~----------------------~la~~e~~ia~~Y~~-----~~~y~AA~ 195 (243)
T PRK10866 143 AFRDFSKLVRGYPNSQYTTDATKRLVFLKD----------------------RLAKYELSVAEYYTK-----RGAYVAVV 195 (243)
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH-----cCchHHHH
Confidence 66777777765 211 12222211111 112223567777776 45888888
Q ss_pred HHHHHHHhC-----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 341 EYFEKAADN-----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 341 ~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
.-++..++. ..+++++.+...|.. .+..++|..+...
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~----lg~~~~a~~~~~~ 237 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQ----LQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 888888865 356788888888888 8888888776543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-05 Score=62.49 Aligned_cols=94 Identities=26% Similarity=0.341 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C---
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G--- 386 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~--- 386 (525)
.++.+|..+.. .+++++|+..|+++++.. + +.+++.+|.++.. .+++++|+.+|++++.. +
T Consensus 4 ~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 4 AYYDAALLVLK-----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCc
Confidence 34444444443 335555555555554431 1 2345555555555 55555555555555543 1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
.+.++..+|.++.. .+++++|+.+++++++..|
T Consensus 75 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 75 APDALLKLGMSLQE----LGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred ccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHCc
Confidence 13455555555554 5555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=70.75 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=94.8
Q ss_pred cCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 156 EGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 156 ~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
+.+...+++..+..+...+++++|+..+..++.
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~----------------------------------------------- 334 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIA----------------------------------------------- 334 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHH-----------------------------------------------
Confidence 346677888888888888888888888777643
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 236 ~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
..|+++-.+...+.++...+ +.++|.+.+++++.. +.+....++|..|.. .+++.+|+..++......
T Consensus 335 -~~P~N~~~~~~~~~i~~~~n-----k~~~A~e~~~kal~l~P~~~~l~~~~a~all~----~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 335 -AQPDNPYYLELAGDILLEAN-----KAKEAIERLKKALALDPNSPLLQLNLAQALLK----GGKPQEAIRILNRYLFND 404 (484)
T ss_pred -hCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh----cCChHHHHHHHHHHhhcC
Confidence 35577777777888887773 888888888887765 446677778888888 777888888888877653
Q ss_pred --CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC
Q 009801 314 --LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN 349 (525)
Q Consensus 314 --~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~ 349 (525)
++..+..|+..|.. .|+..++...+-.....
T Consensus 405 p~dp~~w~~LAqay~~-----~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 405 PEDPNGWDLLAQAYAE-----LGNRAEALLARAEGYAL 437 (484)
T ss_pred CCCchHHHHHHHHHHH-----hCchHHHHHHHHHHHHh
Confidence 77778888887765 44555555555444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.20 E-value=3e-05 Score=59.36 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
+++.+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|+.++++++.. .+..++..+|.+
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 46788888887 8999999999999998865 467889999999999999999999999876 455688899999
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+.. .+++++|..+++++++..
T Consensus 78 ~~~----------------~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 78 YYK----------------LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHH----------------HHhHHHHHHHHHHHHccC
Confidence 987 778999999999887643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-06 Score=62.08 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHH
Q 009801 369 KRDVKLACKYFLVAANAG----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGK 442 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~ 442 (525)
++++++|+.+++++++.. +...++++|.+|.. .+++++|+.++++ .+.+ +....+.+|.+++.+|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 466777777777777652 23455566777776 7777777777777 3332 34566666777777777777
Q ss_pred HHHHHHHH
Q 009801 443 AFLLYSRM 450 (525)
Q Consensus 443 A~~~~~~a 450 (525)
|+..|++|
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 77777764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00027 Score=63.35 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---- 349 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---- 349 (525)
+..++..|..+.. .|++.+|+..|++..... -+.+.+.+|..++. .+++++|+..+++-++.
T Consensus 5 ~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-----~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 5 AEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-----QGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCCC
Confidence 3444555555555 555555555555555431 24455555555554 33555555555555443
Q ss_pred -CChhHHHHHHHHHHcC-------CCCcCCHHHHHHHHHHHHHc--C-----------------CHHHHHHHHHHHHcCC
Q 009801 350 -EEAGGHYNLGVMYYKG-------IGVKRDVKLACKYFLVAANA--G-----------------HQKAFYQLAKMFHTGV 402 (525)
Q Consensus 350 -~~~~a~~~lg~~y~~g-------~~~~~~~~~A~~~~~~a~~~--~-----------------~~~a~~~l~~~y~~g~ 402 (525)
..+.+++.+|.++... ...+....+|+..|+..++. + -..--+.+|..|..
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-- 153 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK-- 153 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 1233555555554331 00022334555555555433 1 12233445666776
Q ss_pred CCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHH
Q 009801 403 GLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 403 g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A 443 (525)
.+.+..|+..++.+++.-| ..++..++..+..+|..+.|
T Consensus 154 --~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 --RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp --TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred --cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777888888887777643 45667777777777776644
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00018 Score=73.48 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCC---ccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVE---KKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGI 366 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~---~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~ 366 (525)
..+..+|+.+|++|++.+ ++.++..++.++....... ..+..++....+++... .++.++..+|.....
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-- 432 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-- 432 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh--
Confidence 445778888888888764 6677777666664322111 12345566666665442 345677778888777
Q ss_pred CCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH
Q 009801 367 GVKRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (525)
.+++++|...+++|+++ .+..++..+|.++.. .|++++|++.|++|+.++|....+
T Consensus 433 --~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 433 --KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred --cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchH
Confidence 78888888888888877 356677778888886 888888888888888887644333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0002 Score=69.74 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHH---Hc--CCHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHc
Q 009801 296 ERNYTKALEWLTHAA---RQ--QLYSAYNGIGYLYVKG----YGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYK 364 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~---~~--~~~~a~~~lg~~~~~g----~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 364 (525)
..+.+.|+.+|.+|+ +. +.+.++..++.++..+ +.....+..+|....++|++. +|+.++..+|.+...
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 446788999999998 43 3688888888887643 322344788899999999877 588889999998887
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCC
Q 009801 365 GIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS---SLSRWALESYLKGD 439 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---a~~~l~~~~~~~g~ 439 (525)
.++++.|..+|++|... +.+.+++..|.+... .|+.++|.+..+++++++|.. ....+-...|....
T Consensus 351 ----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 351 ----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred ----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence 88899999999999877 678888999988876 899999999999999998844 23333332556677
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
.++|+..|-+-.+.
T Consensus 423 ~~~~~~~~~~~~~~ 436 (458)
T PRK11906 423 LKNNIKLYYKETES 436 (458)
T ss_pred hhhhHHHHhhcccc
Confidence 88888887665554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-05 Score=69.13 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=62.0
Q ss_pred hhHHHHHHHHH-HcCCCCcCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--
Q 009801 352 AGGHYNLGVMY-YKGIGVKRDVKLACKYFLVAANA--GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (525)
Q Consensus 352 ~~a~~~lg~~y-~~g~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (525)
....+..+..+ .. .+++++|+..|++.++. ++ +.+++++|.+|.. .+++++|+..|+++++..|
T Consensus 142 e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 142 ANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCC
Confidence 34445555443 44 46777777777777665 22 4677777777776 7777777777777776532
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 ---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++++.+|.++..+|++++|+..|++.++.
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566777777777777777777777777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00024 Score=69.24 Aligned_cols=163 Identities=15% Similarity=0.066 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHH---hc--CCHHHHHHHHHHHHcC----C-CCCCCHHHHHHHHHHHHHcC
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAA---DK--GEPQSMEFLGEIYARG----A-GVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~---~~--~~~~a~~~Lg~~y~~g----~-~~~~~~~~A~~~~~~a~~~~ 313 (525)
..+..|...... +.+.+.+.|+.+|.+|+ +. +.+.++..++.++... . ....+..+|...-++|++.+
T Consensus 257 d~ylrg~~~~~~--~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld 334 (458)
T PRK11906 257 DEMLAGKKELYD--FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT 334 (458)
T ss_pred HHHHHHHHHhhc--cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 346667766655 56678899999999999 43 5678888888887664 2 24667888999999999875
Q ss_pred --CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH
Q 009801 314 --LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK 389 (525)
Q Consensus 314 --~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~ 389 (525)
++.++..+|.+... .++++.|..+|++|... +.+.+++..|++..- .++.++|....++++++....
T Consensus 335 ~~Da~a~~~~g~~~~~-----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 335 TVDGKILAIMGLITGL-----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred CCCHHHHHHHHHHHHh-----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchh
Confidence 89999999998765 45799999999999876 688999999999999 999999999999999986433
Q ss_pred ---HHHHHHH-HHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 390 ---AFYQLAK-MFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 390 ---a~~~l~~-~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
+...+-. +|. ....+.|+..|-+-.+..
T Consensus 406 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 406 RKAVVIKECVDMYV-----PNPLKNNIKLYYKETESE 437 (458)
T ss_pred hHHHHHHHHHHHHc-----CCchhhhHHHHhhccccc
Confidence 3333333 454 467888999887665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00023 Score=63.71 Aligned_cols=167 Identities=19% Similarity=0.168 Sum_probs=113.4
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh--cC---ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EG---DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG- 157 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 157 (525)
.++++|..|...+. .+++.+|+..|++..+ |+ -+.+++.+|..|.. .+++.+|+..|++-++.
T Consensus 4 ~~~~lY~~a~~~~~-------~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQ-------QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHH-------CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence 46788999999887 8999999999999653 33 37889999999998 89999999999998763
Q ss_pred -C---CHHHHHHHHHHHhcc-----------ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhc
Q 009801 158 -G---NIQSKMAVAYTYLRQ-----------DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222 (525)
Q Consensus 158 -~---~~~a~~~la~~y~~~-----------~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (525)
+ -+.+++.+|..+... ....+|+..|+.++..-|++..
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y--------------------------- 125 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY--------------------------- 125 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT---------------------------
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH---------------------------
Confidence 2 347889999886653 3345788888888876555421
Q ss_pred cCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCC
Q 009801 223 RGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVER 297 (525)
Q Consensus 223 ~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~~~~~ 297 (525)
..+|...+.. +...-..--+.+|..|.+. +.+.-|+.-++.+++. +. ..++..|+..|.. .+
T Consensus 126 ---~~~A~~~l~~-l~~~la~~e~~ia~~Y~~~-----~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~----l~ 192 (203)
T PF13525_consen 126 ---AEEAKKRLAE-LRNRLAEHELYIARFYYKR-----GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK----LG 192 (203)
T ss_dssp ---HHHHHHHHHH-HHHHHHHHHHHHHHHHHCT-----T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH----TT
T ss_pred ---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH----hC
Confidence 1223222222 1222234456678888777 4888888888888875 22 3567777777777 66
Q ss_pred CHHH
Q 009801 298 NYTK 301 (525)
Q Consensus 298 ~~~~ 301 (525)
..+.
T Consensus 193 ~~~~ 196 (203)
T PF13525_consen 193 LKQA 196 (203)
T ss_dssp -HHH
T ss_pred ChHH
Confidence 6553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00056 Score=59.82 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=41.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCC
Q 009801 261 RDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVE 332 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~ 332 (525)
..+++|..+|.+|.. +|.. .+++..|-..|.++++. + -+..+...+.+|..
T Consensus 28 ~k~eeAadl~~~Aan------------~ykl----aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk----- 86 (288)
T KOG1586|consen 28 NKYEEAAELYERAAN------------MYKL----AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK----- 86 (288)
T ss_pred cchHHHHHHHHHHHH------------HHHH----HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-----
Confidence 478888888877743 4444 45566666666666542 1 24455666666654
Q ss_pred ccCHHHHHHHHHHHHh
Q 009801 333 KKNYTKAKEYFEKAAD 348 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~ 348 (525)
.++++|+.+++++++
T Consensus 87 -~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 87 -VDPEEAVNCLEKAIE 101 (288)
T ss_pred -cChHHHHHHHHHHHH
Confidence 378888888888775
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00011 Score=68.08 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHH-HcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----Ch
Q 009801 387 HQKAFYQLAKMF-HTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----GY 455 (525)
Q Consensus 387 ~~~a~~~l~~~y-~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~ 455 (525)
+....+..+..+ .. .+++++|+..|++.++..| +++++++|.+++..|++++|+..|+++++. ..
T Consensus 141 ~e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~ 216 (263)
T PRK10803 141 DANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA 216 (263)
T ss_pred CHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 445566666654 33 6899999999999999865 579999999999999999999999999964 26
Q ss_pred HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 456 ~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+++++.+|.++.. .+++++|+..|++.++..
T Consensus 217 ~dAl~klg~~~~~----------------~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 217 ADAMFKVGVIMQD----------------KGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred hHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHC
Confidence 8899999999987 678999999999998754
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00061 Score=59.60 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---C--C---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---E--E---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---~--~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
..||.+|.. ...++++|+.+|++|.+- . + ...+...+..-.. .+++.+|+..|++.+.. +++
T Consensus 117 ~~iaEiyEs----dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~----leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 117 IEIAEIYES----DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ----LEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hhHHHHHhh----hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccch
Confidence 345566654 123666666666666543 1 1 1123344555555 67788888888877654 333
Q ss_pred H-------HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh
Q 009801 389 K-------AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (525)
Q Consensus 389 ~-------a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (525)
. -.+.-|.++.. ..|.-.+...+++-.+.+|.
T Consensus 189 LLKys~KdyflkAgLChl~----~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 189 LLKYSAKDYFLKAGLCHLC----KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHhHHHHHHHHHHHHhHh----cccHHHHHHHHHHHHhcCCc
Confidence 2 22333555553 45666666666666666663
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=57.02 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=43.3
Q ss_pred HHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 009801 129 VLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (525)
Q Consensus 129 ~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~ 192 (525)
.+|..+.. .+++++|+..|+++++. ++..+++.+|.++...|++++|+.+|+++++..|.
T Consensus 2 ~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45666666 77778888888877764 46777788888888888888888888877766443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00012 Score=61.16 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
..+..+..|.-+...|++++|...|+-+.- .+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------------------------------------~d 67 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------------------------------------YD 67 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------------hC
Confidence 346778888888888888888888876532 45
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS 316 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~ 316 (525)
+.+++.+..||.++... +++++|+..|-.|.. .++|...+..|.+|.. .++.++|+..|+.+++...-.
T Consensus 68 ~~n~~Y~~GLaa~~Q~~-----k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~----l~~~~~A~~~f~~a~~~~~~~ 138 (165)
T PRK15331 68 FYNPDYTMGLAAVCQLK-----KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL----MRKAAKARQCFELVNERTEDE 138 (165)
T ss_pred cCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccCCCCccchHHHHHHH----hCCHHHHHHHHHHHHhCcchH
Confidence 67788889999999766 599999999998765 4788899999999999 999999999999998865433
Q ss_pred HHHHHHHHH
Q 009801 317 AYNGIGYLY 325 (525)
Q Consensus 317 a~~~lg~~~ 325 (525)
.....+..+
T Consensus 139 ~l~~~A~~~ 147 (165)
T PRK15331 139 SLRAKALVY 147 (165)
T ss_pred HHHHHHHHH
Confidence 333333333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.4e-05 Score=57.25 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G-----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~-----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (525)
..++.++|.++..+|++++|+.+|+++++. | ...+++++|.++.. .+++++|+.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----------------~g~~~~A~~~ 68 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----------------LGDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----------------TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----------------cCCHHHHHHH
Confidence 346788999999999999999999999854 2 24578889999988 7799999999
Q ss_pred HHHHHh
Q 009801 495 WWQASE 500 (525)
Q Consensus 495 ~~~a~~ 500 (525)
+++|++
T Consensus 69 ~~~al~ 74 (78)
T PF13424_consen 69 YQKALD 74 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999985
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.7e-05 Score=55.43 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=33.6
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|..+.. .+++++|+..|+++++..| +.+++.+|.++..+|++++|+.+|+++++.
T Consensus 3 ~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555554 5666666666666666653 455566666666666666666666666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=65.99 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
+.++-+.-++.-+.. +|++.|..||.+|.. .+++..|...|.+|.++ ++++.+.-+|.++.... ......+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-~~~~ta~ 211 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-GQQMTAK 211 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCcccHH
Confidence 456666666665544 799999999999999 99999999999999988 67888888887765433 3667899
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 411 ATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 411 A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+...+++++..++ ..+.+.||..++..|+|++|+..++..++..
T Consensus 212 a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999985 6788999999999999999999999998874
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00026 Score=67.26 Aligned_cols=140 Identities=18% Similarity=0.136 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~ 397 (525)
.-.-|..|+. .+++..|...|++|+.. .-|.. .-+.++... +..--..++.||+.+
T Consensus 211 ~ke~Gn~~fK-----~gk~~~A~~~Yerav~~----------l~~~~----~~~~ee~~~-----~~~~k~~~~lNlA~c 266 (397)
T KOG0543|consen 211 KKERGNVLFK-----EGKFKLAKKRYERAVSF----------LEYRR----SFDEEEQKK-----AEALKLACHLNLAAC 266 (397)
T ss_pred HHHhhhHHHh-----hchHHHHHHHHHHHHHH----------hhccc----cCCHHHHHH-----HHHHHHHHhhHHHHH
Confidence 3556777766 67888888888887753 11111 111111111 111123467888999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCc
Q 009801 398 FHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS 473 (525)
Q Consensus 398 y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~ 473 (525)
+.. .+++.+|+.+..++++.+ +..|+|+.|.++..+|+++.|+..|+++++. .|-.+...|..+-.+.
T Consensus 267 ~lK----l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~---- 338 (397)
T KOG0543|consen 267 YLK----LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI---- 338 (397)
T ss_pred HHh----hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----
Confidence 988 889999999999998886 4678999999999999999999999999876 5777888888877663
Q ss_pred cccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 474 MCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
....++..+.|.+...
T Consensus 339 -----------~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 -----------REYEEKEKKMYANMFA 354 (397)
T ss_pred -----------HHHHHHHHHHHHHHhh
Confidence 3344555667776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.5e-05 Score=55.67 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----GP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.++..+|++++|+.++++|++.
T Consensus 6 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455666777766 67777777777777644 11 335567777777788888888887777653
|
... |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.025 Score=54.99 Aligned_cols=343 Identities=15% Similarity=0.047 Sum_probs=179.8
Q ss_pred hHhHHHHHHHHHHHHhc--CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAAME--GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--NIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++..|...+++|.+. .+..-+...+.+-.. .+...-|...+.+|+..= -..-.+..-.+-...|+...|.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emk----nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMK----NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh----hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 56777777777776543 445555556655555 566667777777776531 1122233333333356666666
Q ss_pred HHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q 009801 181 KLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGL 259 (525)
Q Consensus 181 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~ 259 (525)
..|++=++-.|. .+.+.+....-.+.+..+.|..+|++-+-- -+...+...+..-...
T Consensus 162 qiferW~~w~P~-----------------eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~---- 220 (677)
T KOG1915|consen 162 QIFERWMEWEPD-----------------EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKH---- 220 (677)
T ss_pred HHHHHHHcCCCc-----------------HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhc----
Confidence 666655443222 122233333334445555566666554322 2344444445444444
Q ss_pred ccCHHHHHHHHHHHHhc-CCH--HHHHHH--HHHHHcCCCCCCCHHHHHHHHHHHHHc----------------------
Q 009801 260 RRDRTKALMWFSKAADK-GEP--QSMEFL--GEIYARGAGVERNYTKALEWLTHAARQ---------------------- 312 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~-~~~--~a~~~L--g~~y~~g~~~~~~~~~A~~~~~~a~~~---------------------- 312 (525)
++...|...|++|++. ++. ...... |..=.. ++.++.|.-.|+-|++.
T Consensus 221 -g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~----qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 221 -GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER----QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred -CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 3666666666666653 221 111111 111111 34455555555555442
Q ss_pred ----------------------C--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChh---------HHHHHH
Q 009801 313 ----------------------Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAG---------GHYNLG 359 (525)
Q Consensus 313 ----------------------~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~---------a~~~lg 359 (525)
+ +-++++..-.+-.. .|+.+...+.|++|+....|. .+..+-
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~-----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES-----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh-----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 1 23333333333332 246666666666666543221 111222
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc-CC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH-HHHH
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA-GH-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS-RWAL 432 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~-~~-----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-~l~~ 432 (525)
.++..-. ..+|.+.+.+.|+.++++ .| +..+...+..-.. +.+...|...+-.|+..-|-.-.+ ..-.
T Consensus 371 YalyeEl-e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR----q~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 371 YALYEEL-EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR----QLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH----HcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 2221100 145666666667666665 11 2222222222222 567777777777777665533332 3334
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCC
Q 009801 433 ESYLKGDVGKAFLLYSRMAELG--YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503 (525)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 503 (525)
+-..+++++.....|++.++.+ +..++...|-+-.. .++.+.|...|+-|+.+..
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~----------------LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS----------------LGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH----------------hhhHHHHHHHHHHHhcCcc
Confidence 4556779999999999999875 55567777776665 5567899999999998763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0001 Score=67.45 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=93.9
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
.+|+|++-+..||.+|+. .+++..|..-|.++. .+.|++.+..+|.++....| ..+..++...+++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~-------~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMA-------LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHH-------hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHhc
Confidence 689999999999999998 899999999999986 67899999999997665444 67889999999999875
Q ss_pred --CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 158 --GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 158 --~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
+|+.+++.||..++.+++|.+|+..++..++..+.+
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 589999999999999999999999999998865543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0005 Score=70.30 Aligned_cols=136 Identities=17% Similarity=0.063 Sum_probs=101.6
Q ss_pred CCHHH--HHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC----CCHHHHHHHHHHHHH
Q 009801 240 GNAGA--MYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVE----RNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a--~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~----~~~~~A~~~~~~a~~ 311 (525)
.++.| ++..|.-|... ....+..+|+.+|++|++. +++.++-.++.+|....+.. .+..++....+++..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~--~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNS--GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44444 45556666554 3456789999999999875 67788888777765532211 234566666666555
Q ss_pred c----CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 312 Q----QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 312 ~----~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
. ..+.++..+|.+... .+++++|...+++|++.+ +..++..+|.++.. .|+.++|+..|++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~-----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALV-----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 3 256778888888765 569999999999999885 56788999999999 999999999999999884
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0004 Score=54.84 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=82.2
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHH
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSSLS 428 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~ 428 (525)
.-|..... .++.+.|++.|.+++.. ..+.++++-+..+.- +++.++|+.-+.+|+++.. -.++.
T Consensus 48 l~~valaE----~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 48 LKAIALAE----AGDLDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHh----ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34566666 78999999999999876 688899999999987 8999999999999998842 35778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAELGYEVAQSNA 462 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~l 462 (525)
..|.+|...|+.+.|..-|+.|++.|++.+-..|
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QL 153 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSKFAREQL 153 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHH
Confidence 8999999999999999999999999987765544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0061 Score=54.74 Aligned_cols=229 Identities=14% Similarity=0.024 Sum_probs=138.8
Q ss_pred hhccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERN 298 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~ 298 (525)
+...|.|..++..-++.-.. +++.-...+.+.|...| .+..-+.--+.+. .....+...++.+... .++
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg-----~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~----e~~ 87 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALG-----QYQIVISEIKEGK-ATPLQAVRLLAEYLEL----ESN 87 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcc-----ccccccccccccc-CChHHHHHHHHHHhhC----cch
Confidence 34567788888776665444 66777777777777664 2211111111111 1223444555555555 555
Q ss_pred HHHHHHHHHHH-HHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHH
Q 009801 299 YTKALEWLTHA-ARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 299 ~~~A~~~~~~a-~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
.+.-+.-+.+- +... +...+..-+.++.. .+++++|++...+ .++-++.-.=-.++.+ ..+.+-
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~-----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk----~~r~d~ 155 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMH-----DGDFDEALKALHL---GENLEAAALNVQILLK----MHRFDL 155 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc-----CCChHHHHHHHhc---cchHHHHHHHHHHHHH----HHHHHH
Confidence 44444333333 2221 22334444455544 4588888888776 2333443333455666 677888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 375 A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
|.+..++..+.++......|+..+..-.........|..+|+...+.-+ +.-....+.+...+|++++|...++.|+.
T Consensus 156 A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 156 AEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888777766666666766664433234458888999988887543 34445667778888999999999999987
Q ss_pred c--ChHHHHHHHHHHHhhhC
Q 009801 453 L--GYEVAQSNAAWILDKYG 470 (525)
Q Consensus 453 ~--~~~~a~~~la~~~~~~~ 470 (525)
. ++++++.|+-.+-...|
T Consensus 236 kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLG 255 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhC
Confidence 6 67888888777766643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00051 Score=57.43 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGH 355 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 355 (525)
...+..|.-++. .|++++|...|+-.+..+ ++.-+..||.++.. ++++++|+..|..|... ++|...
T Consensus 38 e~iY~~Ay~~y~----~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-----~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 38 DGLYAHAYEFYN----QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-----KKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcccCCCCcc
Confidence 345556666666 788888888888877654 66677777777765 56888888888877544 678888
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+..|.+|.. .++..+|...|+.+++.
T Consensus 109 f~agqC~l~----l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 FFTGQCQLL----MRKAAKARQCFELVNER 134 (165)
T ss_pred chHHHHHHH----hCCHHHHHHHHHHHHhC
Confidence 888888888 88888888888888775
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00053 Score=54.19 Aligned_cols=98 Identities=19% Similarity=0.115 Sum_probs=82.9
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-----hHHHHHHHHHH
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL-G-----YEVAQSNAAWI 465 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-~-----~~~a~~~la~~ 465 (525)
-|.+... .++.+.|++.|.+++..-| +.++++.+..+..+|+.++|+.-+++|++. | -..++..-|.+
T Consensus 49 ~~valaE----~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 49 KAIALAE----AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHh----ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3555555 7899999999999999864 788999999999999999999999999987 3 23478888988
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHH
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIG 511 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 511 (525)
|.. .++-+.|..-|+.|++.|++-+-..|.
T Consensus 125 yRl----------------~g~dd~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 125 YRL----------------LGNDDAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred HHH----------------hCchHHHHHhHHHHHHhCCHHHHHHHH
Confidence 877 667899999999999999877766554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0041 Score=53.99 Aligned_cols=122 Identities=16% Similarity=-0.022 Sum_probs=73.6
Q ss_pred HHHHhhhcCCCccCCHHHHHHHHHHH--HcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhh
Q 009801 129 VLGFLYGMGMMRERNKGKAFLYHHFA--AEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPI 206 (525)
Q Consensus 129 ~lg~~y~~g~g~~~d~~~A~~~~~~a--~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~ 206 (525)
..|..|-+ .|=...|.--|.++ +.+..+++.+.||..+...++++.|.+.|..+.+++|...
T Consensus 70 ERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~------------ 133 (297)
T COG4785 70 ERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN------------ 133 (297)
T ss_pred Hhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch------------
Confidence 33444444 33444444445554 4567888999999999999999999999998888765431
Q ss_pred hhcccchhhhhHhhhccCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 207 RIHNGAEENKGALRKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
....+.+.....-|++.-|.+-+.+- .++++|---..|=..- .+-|+++|..-+.+-.+.
T Consensus 134 ----Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E------~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 134 ----YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE------QKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ----HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH------hhCCHHHHHHHHHHHHHh
Confidence 22344555555667777777666664 3445553322221111 123777777666554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00095 Score=65.28 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=88.6
Q ss_pred cCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 334 KNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
+++++|+.++++..+.+ |++...|+.++.. .++..+|++.+.+++.. .+...+...+..+.. .++++.|
T Consensus 183 ~~~~~ai~lle~L~~~~-pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~~lA 253 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD-PEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKYELA 253 (395)
T ss_pred ccHHHHHHHHHHHHhcC-CcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHH
Confidence 37888998888877654 7788888888888 78888999999998875 366677777777776 8889999
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
+...+++++..| ...++.|+.+|...|++++|+..+..+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999876 568889999999999999999777644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.032 Score=50.23 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIG 322 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 322 (525)
-....-|.+|.+++ ++++|++...+. ++-++...=-.|..+ ..+.+-|.+.+++..+.++-..+..|+
T Consensus 109 i~~l~aa~i~~~~~-----~~deAl~~~~~~---~~lE~~Al~VqI~lk----~~r~d~A~~~lk~mq~ided~tLtQLA 176 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDG-----DFDEALKALHLG---ENLEAAALNVQILLK----MHRFDLAEKELKKMQQIDEDATLTQLA 176 (299)
T ss_pred HHHHHhhHHhhcCC-----ChHHHHHHHhcc---chHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 44555567777774 888888887762 222333333345555 667788888888877777777777788
Q ss_pred HHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 009801 323 YLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMF 398 (525)
Q Consensus 323 ~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y 398 (525)
..|..-... .+.+..|..+|+...+. ..+......+.+... ++++++|...++.+++. ++++.+.|+-.+-
T Consensus 177 ~awv~la~g-gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 177 QAWVKLATG-GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHhcc-chhhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 777531111 23678888888888774 345566677778888 88888888888888876 6778877776665
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 399 HTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 399 ~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
.. ..++.+--.++..+.....|
T Consensus 252 ~~---~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 252 LH---LGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HH---hCCChHHHHHHHHHHHhcCC
Confidence 54 13333333444444444443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0065 Score=59.02 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccc-hhhhhHhhhccCCcHHHHHHHHH
Q 009801 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGA-EENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 157 ~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.+.++++..-...+...|++.+|.+.+...-- .........-+....+ ++++|-+..+.+.++-+..+|++
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni--------~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI--------HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLK 308 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhccc--------ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHH
Confidence 36778888889999999999999988754311 0111111111223344 48999999999999999999999
Q ss_pred HHHc--------------------CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 009801 236 QAQK--------------------GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR 291 (525)
Q Consensus 236 ~~~~--------------------~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 291 (525)
+... ..-+..|++|..|...+ ++..|.++|.+++.. .+|..|.+|+.++..
T Consensus 309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g-----rPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG-----RPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC-----CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8641 13468899999999995 999999999999986 789999999998764
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00074 Score=61.16 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----h
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----W 424 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~ 424 (525)
.|+.+.-+.. .+++..|...|..-++.- -++|+||||.++.. +++++.|...|..++...| +
T Consensus 144 ~Y~~A~~~~k----sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYK----SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCCh
Confidence 6778887777 888888888888877762 36788888888887 8888888888888877643 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++++.+|.+...+|+.++|...|++.++.
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78888888888888888888888888776
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0002 Score=69.57 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH---HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK---AFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~---a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+++.+++++|..|.. .+++++|+..|+++++. ++.+ +++++|.+|.. .++.++|+.++++|++.
T Consensus 73 ~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 455666666666666 66666666666666665 3332 36666666665 66666666666666665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=60.30 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--- 385 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 385 (525)
+..-.++.+.-+.. .+++..|..-|+.-++. -.+.|+|+||.+++. +++++.|...|..+++.
T Consensus 140 ~~~~~Y~~A~~~~k-----sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 140 PATKLYNAALDLYK-----SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred chhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCC
Confidence 34447888887766 67999999999999976 257899999999999 99999999999999875
Q ss_pred --CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH
Q 009801 386 --GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 386 --~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (525)
.-+++++.||.+... .++.++|...|++.++.-|..
T Consensus 211 s~KApdallKlg~~~~~----l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 211 SPKAPDALLKLGVSLGR----LGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCC
Confidence 357999999999998 999999999999999987643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00086 Score=63.82 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
++.||+.+|.. .+++.+|+.+..+++.. +|..++|+-|.++.. .++++.|+..|+++++..|
T Consensus 259 ~~lNlA~c~lK----l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 259 CHLNLAACYLK----LKEYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HhhHHHHHHHh----hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCC
Confidence 45566666666 66666666666666654 456666666666665 6666666666666666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.045 Score=49.33 Aligned_cols=209 Identities=21% Similarity=0.157 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHhcCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCc
Q 009801 262 DRTKALMWFSKAADKGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR----QQLYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~ 333 (525)
....+...+........ .......+..+.. .+++..+...+..... ......+..++..+.. .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 108 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEA-----L 108 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH-----H
Confidence 45555566666555432 4566667777776 7777777777777764 2355566667776654 3
Q ss_pred cCHHHHHHHHHHHHhCC--ChhHHHHHHH-HHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCc
Q 009801 334 KNYTKAKEYFEKAADNE--EAGGHYNLGV-MYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~-~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~ 405 (525)
+++.+++..+..+.... +.......+. ++.. .+++++|...|++++... ........+..+.. .
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 180 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYE----LGDYEEALELYEKALELDPELNELAEALLALGALLEA----L 180 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----h
Confidence 46777888888777642 3334444444 6777 788888888888776632 22333333443443 6
Q ss_pred CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh--HHHHHHHHHHHhhhCCCccccCCCC
Q 009801 406 KNLHMATALYKLVAERGPW---SSLSRWALESYLKGDVGKAFLLYSRMAELGY--EVAQSNAAWILDKYGEGSMCMGESG 480 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~---~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~a~~~la~~~~~~~~~~~~~~~~~ 480 (525)
++++.|+..+.+++...+. .....++..+...+++++|+..+.++..... ......++..+..
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 248 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE------------ 248 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH------------
Confidence 6788888888888776543 5666777778888888888888888877643 3555666666653
Q ss_pred CCCChHhHHHHHHHHHHHHhCCC
Q 009801 481 FCTDAERHQCAHSLWWQASEQGN 503 (525)
Q Consensus 481 ~~~~~~~~~~A~~~~~~a~~~~~ 503 (525)
.+.++++...++++.+...
T Consensus 249 ----~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 249 ----LGRYEEALEALEKALELDP 267 (291)
T ss_pred ----cCCHHHHHHHHHHHHHhCc
Confidence 3356777777777766543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0081 Score=52.21 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=113.0
Q ss_pred hhHhhhccCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHc
Q 009801 216 KGALRKSRGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSMEFLGEIYAR 291 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~ 291 (525)
.|.+|.+.|-..-|.--|.++ +.|..|++...||..+... +|++-|.+.|....+.+ +..+..+.|..+..
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a-----~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA-----GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc-----ccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 455566666666666666664 5668899999999888766 49999999999988764 45677777776666
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHH-HHHHHHHHcCCCCcC
Q 009801 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH-YNLGVMYYKGIGVKR 370 (525)
Q Consensus 292 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~-~~lg~~y~~g~~~~~ 370 (525)
-|++.-|.+-+.+--..+..+....| ++|..- .+-|+.+|..-+.+=.+..+.+-| .++-..|.. .-
T Consensus 146 ----~gR~~LAq~d~~~fYQ~D~~DPfR~L-WLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg----ki 213 (297)
T COG4785 146 ----GGRYKLAQDDLLAFYQDDPNDPFRSL-WLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG----KI 213 (297)
T ss_pred ----cCchHhhHHHHHHHHhcCCCChHHHH-HHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh----hc
Confidence 67888888887777655432222222 333321 123777777665544443332222 122223332 11
Q ss_pred CHHHHHHHHHHHHH------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 371 DVKLACKYFLVAAN------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 371 ~~~~A~~~~~~a~~------~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
..+.+.+-...-++ .--.+.+++||..|.+ .|+.++|...|+.|+..+
T Consensus 214 S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~----~G~~~~A~~LfKLaiann 267 (297)
T COG4785 214 SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS----LGDLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHh
Confidence 11122111111111 1124678888888887 889999999999888775
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.029 Score=47.67 Aligned_cols=141 Identities=18% Similarity=0.121 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCccCHH
Q 009801 262 DRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---QLYSAYNGIGYLYVKGYGVEKKNYT 337 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~ 337 (525)
|++..+.-..+.++. ....-.+.||..... .|++.+|...|++++.. +++..+..++...+. .+++.
T Consensus 71 dP~R~~Rea~~~~~~ApTvqnr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-----~~~~A 141 (251)
T COG4700 71 DPERHLREATEELAIAPTVQNRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-----IQEFA 141 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHHHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-----hccHH
Confidence 554444443333332 223445678888887 88888888888888764 466667777777665 45888
Q ss_pred HHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 338 KAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQLAKMFHTGVGLKKNLHMAT 412 (525)
Q Consensus 338 ~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~ 412 (525)
.|...+++..+. ..|+....+|..|.. .+.+.+|...|+.++.. ..+.+....+.++.. +++..+|.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~ea~ 213 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAA----QGKYADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLREAN 213 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHh----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhHHH
Confidence 888888888766 367778888888888 88888888888888876 667777777777776 66666666
Q ss_pred HHHHHHH
Q 009801 413 ALYKLVA 419 (525)
Q Consensus 413 ~~~~~a~ 419 (525)
.-+....
T Consensus 214 aq~~~v~ 220 (251)
T COG4700 214 AQYVAVV 220 (251)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.017 Score=56.29 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=101.9
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHH---cCC-C-------HHHHHHHHHHHh
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA---EGG-N-------IQSKMAVAYTYL 171 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~---~~~-~-------~~a~~~la~~y~ 171 (525)
..+...+....+-+. ..+.+.+.+.-+..++- .||+.+|++.+-..- +.| . --..++||.+++
T Consensus 219 ~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~----~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 219 TRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA----HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH----hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 444555555444432 44678888888888776 889999999987652 222 1 124578999999
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhhcc--CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc--CCHHHHHH
Q 009801 172 RQDMHDKAVKLYAELAEIAVNSFLIS--KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYK 247 (525)
Q Consensus 172 ~~~~~~~A~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~a~~~ 247 (525)
+.+.|.-+..+|.+++.......-.. +..-..-..-....+.++.|..+...|++..|++.|.+++.. .+|..|..
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLR 374 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLR 374 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999987332222111 111111111122345788999999999999999999999876 78999999
Q ss_pred HHHHHH
Q 009801 248 IGLFYY 253 (525)
Q Consensus 248 Lg~~y~ 253 (525)
|+.+..
T Consensus 375 lAEcCi 380 (696)
T KOG2471|consen 375 LAECCI 380 (696)
T ss_pred HHHHHH
Confidence 999874
|
|
| >smart00671 SEL1 Sel1-like repeats | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00013 Score=44.70 Aligned_cols=36 Identities=36% Similarity=0.439 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCC
Q 009801 124 PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN 159 (525)
Q Consensus 124 ~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~ 159 (525)
+.+++.||.+|..|.|++.|..+|+.||++|++.|+
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 468899999999999999999999999999998764
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0048 Score=60.44 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHH
Q 009801 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKA 339 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A 339 (525)
+++.|+.++++..+.+ +.+...|+.++.. .++..+|++.+.+++... +.+.+..-+..+.. +++++.|
T Consensus 184 ~~~~ai~lle~L~~~~-pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-----k~~~~lA 253 (395)
T PF09295_consen 184 RYDEAIELLEKLRERD-PEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-----KKKYELA 253 (395)
T ss_pred cHHHHHHHHHHHHhcC-CcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCCHHHH
Confidence 5566666666654443 4455556666655 555566666666666543 44555555555544 4466666
Q ss_pred HHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 340 KEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 340 ~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
++..+++++. ++-.+|+.|+.+|.. .+++++|+..+..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLNs 293 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQ----LGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHhc
Confidence 6666666655 345566666666666 6666666655554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.065 Score=48.24 Aligned_cols=218 Identities=22% Similarity=0.166 Sum_probs=162.3
Q ss_pred CcHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCC
Q 009801 225 EDDEAFQILEYQAQKG----NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KGEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~----~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~~~~ 296 (525)
....+...+....... ........+..+... +++..++..+..... ......+..++..+.. .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 108 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKL-----GRLEEALELLEKALELELLPNLAEALLNLGLLLEA----L 108 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-----ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH----H
Confidence 4445555555555543 256777788888766 489999999998874 3556788888998888 8
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHH-HHHhCCCCCccCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHcCCCC
Q 009801 297 RNYTKALEWLTHAARQQ--LYSAYNGIGY-LYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~-~~~~g~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~ 368 (525)
+++..++..+.++.... ........+. ++.. .+++++|...+++++... ........+..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 179 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYE-----LGDYEEALELYEKALELDPELNELAEALLALGALLEA---- 179 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----
Confidence 88999999999998753 3233344443 4544 469999999999997732 23344556666667
Q ss_pred cCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCHHHH
Q 009801 369 KRDVKLACKYFLVAANA--G-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~~~~~g~~~~A 443 (525)
.+++++++..+.++... . .......++..+.. .+++++|+..+.+++...+. .....++..+...++++++
T Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK----LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 88999999999999887 3 35788888989887 77899999999999998764 6677778878877789999
Q ss_pred HHHHHHHHHcChHHHHHHHHHHH
Q 009801 444 FLLYSRMAELGYEVAQSNAAWIL 466 (525)
Q Consensus 444 ~~~~~~a~~~~~~~a~~~la~~~ 466 (525)
...+.++...... ...++..+
T Consensus 256 ~~~~~~~~~~~~~--~~~~~~~~ 276 (291)
T COG0457 256 LEALEKALELDPD--LYNLGLAL 276 (291)
T ss_pred HHHHHHHHHhCcc--hhhhhHHH
Confidence 9999999887543 44444444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=63.75 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=60.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--Chh---HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAG---GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 311 ~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~---a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+.+++.+++++|..|.. .+++++|+..|+++++.+ +++ +++++|.+|.. +++.++|+..+++|++.
T Consensus 71 dP~~a~a~~NLG~AL~~-----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFS-----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 44589999999999987 789999999999999874 443 49999999999 99999999999999997
Q ss_pred CCH
Q 009801 386 GHQ 388 (525)
Q Consensus 386 ~~~ 388 (525)
.+.
T Consensus 142 sn~ 144 (453)
T PLN03098 142 YNL 144 (453)
T ss_pred cch
Confidence 433
|
|
| >PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=45.30 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=31.0
Q ss_pred hHHHHHHH--HhhhcCC-CccCCHHHHHHHHHHHHcCCC
Q 009801 124 PHARSVLG--FLYGMGM-MRERNKGKAFLYHHFAAEGGN 159 (525)
Q Consensus 124 ~~a~~~lg--~~y~~g~-g~~~d~~~A~~~~~~a~~~~~ 159 (525)
++|++.|| .+|..|. |++.|.++|++||++|++.||
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57889999 8889998 788899999999999998775
|
Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0092 Score=48.87 Aligned_cols=110 Identities=21% Similarity=0.121 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----hH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG-----YE 456 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~ 456 (525)
.+..++.-|.-... .+++++|++.++.....-| ..+.+.++.+++..+++++|+..+++.+++. -+
T Consensus 9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 45566777777666 8899999999998877754 6788899999999999999999999999873 34
Q ss_pred HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 457 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.|++..|.++....+..+...- +...++....+|+..|++.++.
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~-~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFF-RSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhc-ccccCcHHHHHHHHHHHHHHHH
Confidence 5788888777664321111111 4555677788999999988864
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=47.49 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
.+++++|+..|+++++..| ..+.+.++.++...|++++|...++++....
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5788888888888887764 6677788888888888888888888887763
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=47.15 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
..+|.. .+++++|++++++++..+| +..+...|.+++.+|++.+|+..++++++..
T Consensus 2 ~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 345555 7788888888888887765 4566677888888888888888888887763
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0013 Score=47.09 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=42.0
Q ss_pred cCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 009801 223 RGEDDEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGE 287 (525)
Q Consensus 223 ~~~~~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 287 (525)
.|++++|++.|+++ ..|+++++.+.+|.+|...+ ++++|..++++++.. +++..+..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----QYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 34445555555554 35688999999999999984 999999999998876 33555555544
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.058 Score=45.90 Aligned_cols=141 Identities=10% Similarity=0.019 Sum_probs=109.7
Q ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCH
Q 009801 224 GEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 224 ~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
=+++.......+..+. -...-.+.||....+.| ++.+|..+|++++.- +++..+..++...+. .+++
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elG-----r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----~~~~ 140 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQNRYRLANALAELG-----RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----IQEF 140 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhh-----hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----hccH
Confidence 3444444444333322 33445677888888774 999999999999875 788899999999998 9999
Q ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCCCcCCHHH
Q 009801 300 TKALEWLTHAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 300 ~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
..|...++...+.+ .++....+|..+.. .|.+..|...|+.+++. ..+.+-...+.++.. +++..+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~e 211 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-----QGKYADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLRE 211 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhH
Confidence 99999999998764 67788889999976 56899999999999987 677888888888888 887777
Q ss_pred HHHHHHHH
Q 009801 375 ACKYFLVA 382 (525)
Q Consensus 375 A~~~~~~a 382 (525)
|..-+...
T Consensus 212 a~aq~~~v 219 (251)
T COG4700 212 ANAQYVAV 219 (251)
T ss_pred HHHHHHHH
Confidence 76655443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.04 Score=56.32 Aligned_cols=209 Identities=16% Similarity=0.076 Sum_probs=111.7
Q ss_pred HHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC---------C----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 127 RSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG---------N----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 127 ~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---------~----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
+-.-|.+|.. ..|+++|+++|++.-.-+ . ..---..|..+.+.|+++.|+..|-++-.....
T Consensus 664 ydkagdlfek----i~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka- 738 (1636)
T KOG3616|consen 664 YDKAGDLFEK----IHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA- 738 (1636)
T ss_pred HHhhhhHHHH----hhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence 3345566666 778899999987642211 1 122234566677788999999888765322111
Q ss_pred hhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 009801 194 FLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGA-MYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (525)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a-~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (525)
...-.....+.+|+.++...-+...... +-.++.-|... ++++.|.++|.+
T Consensus 739 -----------------------ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~-----~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 739 -----------------------IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANK-----GDFEIAEELFTE 790 (1636)
T ss_pred -----------------------HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccc-----hhHHHHHHHHHh
Confidence 1112234566778887776666544333 33455555444 588888888877
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhC-------CCCCccCHHHHHHH
Q 009801 273 AADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLY---VKG-------YGVEKKNYTKAKEY 342 (525)
Q Consensus 273 a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~---~~g-------~~~~~~~~~~A~~~ 342 (525)
+---.++ -.+|-. .+++..|.++-++.-..... .-..++..- ..| ..++.+.+++|++.
T Consensus 791 ~~~~~da------i~my~k----~~kw~da~kla~e~~~~e~t-~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm 859 (1636)
T KOG3616|consen 791 ADLFKDA------IDMYGK----AGKWEDAFKLAEECHGPEAT-ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM 859 (1636)
T ss_pred cchhHHH------HHHHhc----cccHHHHHHHHHHhcCchhH-HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence 5332221 123333 55565555444443222111 111111110 011 11234567777777
Q ss_pred HHHHHh---------CC----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 343 FEKAAD---------NE----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 343 ~~~a~~---------~~----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 383 (525)
|.+--. .. -.+..-.+|.-|.. .++.+.|...|.+|-
T Consensus 860 ydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~----~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEA----EGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHh----ccChhHHHHHHHhhh
Confidence 766421 11 23455667777777 778777777665543
|
|
| >smart00671 SEL1 Sel1-like repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00093 Score=40.79 Aligned_cols=32 Identities=44% Similarity=0.672 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
+++.||.+|..|.|+.+|.++|+.||++|++.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 34444444444444444444444444444443
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0031 Score=45.81 Aligned_cols=62 Identities=19% Similarity=-0.008 Sum_probs=53.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHA 506 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 506 (525)
..++...+++++|+.++++++.. +++.++...|.++.. .+++++|+..++++++.+ ++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----------------~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ----------------LGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH----------------hccHHHHHHHHHHHHHHCCCcHHH
Confidence 46789999999999999999987 578899999999998 789999999999999865 4444
Q ss_pred HH
Q 009801 507 AL 508 (525)
Q Consensus 507 ~~ 508 (525)
..
T Consensus 66 ~~ 67 (73)
T PF13371_consen 66 RA 67 (73)
T ss_pred HH
Confidence 33
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.02 Score=46.92 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=74.8
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---C--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---G--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-- 423 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-- 423 (525)
.+..++.-|.-..+ .+++.+|++.|+..-.. | -..+...|+.+|.. .+++++|+..+++-+++.|
T Consensus 9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC
Confidence 45667777777778 88999999988886654 1 35788889999987 8899999999999998875
Q ss_pred ---hHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHc
Q 009801 424 ---WSSLSRWALESYLKGD---------------VGKAFLLYSRMAEL 453 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~---------------~~~A~~~~~~a~~~ 453 (525)
+-+++..|.+++.+.. ..+|+..|++.+..
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 4578888888887765 77777777777765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.2 Score=44.72 Aligned_cols=43 Identities=9% Similarity=-0.026 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHc---CC-----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 009801 406 KNLHMATALYKLVAER---GP-----WSSLSRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~---~~-----~~a~~~l~~~~~~~g~~~~A~~~~~ 448 (525)
.++++|+..|++++.. +. .+-+-..+.++.+...+++|-..+.
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 4555555555555432 11 1122234445555555555544443
|
|
| >PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=41.13 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=19.7
Q ss_pred HHHHHHH--HHHHcCC-CCcCCHHHHHHHHHHHHHcC
Q 009801 389 KAFYQLA--KMFHTGV-GLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 389 ~a~~~l~--~~y~~g~-g~~~~~~~A~~~~~~a~~~~ 422 (525)
.++++|| .+|..|. |+.+|.++|+.||++|++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4555666 5555555 45556666666666665544
|
Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.14 Score=46.38 Aligned_cols=182 Identities=20% Similarity=0.241 Sum_probs=104.7
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh--cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCH
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI 160 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~ 160 (525)
..++-+|..|...+. .+|+++|...|++... |..+. ..
T Consensus 32 ~p~~~LY~~g~~~L~-------~gn~~~A~~~fe~l~~~~p~s~~---------------------------------~~ 71 (254)
T COG4105 32 LPASELYNEGLTELQ-------KGNYEEAIKYFEALDSRHPFSPY---------------------------------SE 71 (254)
T ss_pred CCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHcCCCCcc---------------------------------cH
Confidence 447778888887776 7777777777776431 22211 23
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
.++..++..+...++++.|+...++.+.+.|.+ ++
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~---------------------------------------------~n 106 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH---------------------------------------------PN 106 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC---------------------------------------------CC
Confidence 567777888888888888888888776653332 23
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHH---HHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKA---LMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLY 315 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A---~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 315 (525)
..-+++..|.++........+|..-+ +.-|+..+.. ++.-+ .|-+.=+..++..+ +
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya---------------~dA~~~i~~~~d~L----A 167 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA---------------PDAKARIVKLNDAL----A 167 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch---------------hhHHHHHHHHHHHH----H
Confidence 35567777887777765555665444 4444444442 11100 01111111111111 1
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-----EEAGGHYNLGVMYYKGIGVKRDVKLACK 377 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~~~~~A~~ 377 (525)
.--..+|..|.. .+.+..|+..++..++. ...+++..+...|.. .+-.++|..
T Consensus 168 ~~Em~IaryY~k-----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~----lgl~~~a~~ 225 (254)
T COG4105 168 GHEMAIARYYLK-----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA----LGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHHHH-----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH----hCChHHHHH
Confidence 112446666765 45777777777777765 234566777777777 666666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.11 Score=46.34 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~-------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 312 (525)
.+..-+..|... +++++|...+.+|++- .+ +.++-..+.+... ...+.++..+|++|+..
T Consensus 33 ~yekAAvafRnA-----k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake----~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNA-----KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE----LSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHH
Confidence 333444555544 5899999999999853 11 3455666667776 78899999999999754
Q ss_pred -CC----HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---CC-----hhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 313 -QL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---EE-----AGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 313 -~~----~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---~~-----~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
|. +.++-.-|.+... .++++|+++|++++.. ++ .+-+...+.++.+ .+.+.+|...+
T Consensus 104 ~GspdtAAmaleKAak~len------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a~ 173 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALEN------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATAF 173 (308)
T ss_pred hCCcchHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHHH
Confidence 43 3355666677755 3999999999999754 22 2234456777777 78888887777
Q ss_pred HHHHHc----C--CHHHHHHHH--HHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCHHHHHH
Q 009801 380 LVAANA----G--HQKAFYQLA--KMFHTGVGLKKNLHMATALYKLVAERGP------WSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 380 ~~a~~~----~--~~~a~~~l~--~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
.+-... . +...-..++ .+|.. ..|+..|...|+...+.+. ..+..+|- ..|..||.++.-.
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~----~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL-~ayd~gD~E~~~k 248 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLY----AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL-TAYDEGDIEEIKK 248 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhh----HHHHHHHHHHhcchhcCccccChHHHHHHHHHH-HHhccCCHHHHHH
Confidence 653211 1 111122333 33343 5699999999999876642 23333443 3678888887765
Q ss_pred HHH
Q 009801 446 LYS 448 (525)
Q Consensus 446 ~~~ 448 (525)
...
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.15 Score=56.33 Aligned_cols=192 Identities=13% Similarity=0.031 Sum_probs=146.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE----------PQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~----------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
.|+..-.+...-..+.+. .+.++|.+..++|+..=| --|+.+|-.. -|.-+.-.+.|+
T Consensus 1454 sPNSSi~WI~YMaf~Lel-----sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~-------yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLEL-----SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA-------YGTEESLKKVFE 1521 (1710)
T ss_pred CCCcchHHHHHHHHHhhh-----hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh-------hCcHHHHHHHHH
Confidence 345554444443344444 489999999999986421 1233333333 346777889999
Q ss_pred HHHHcCC-HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 308 HAARQQL-YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 308 ~a~~~~~-~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~ 384 (525)
+|++..+ ...+..|..+|.. .+.+++|.++|++.++. .....|..+|..+.+ ..+-+.|...+.+|+.
T Consensus 1522 RAcqycd~~~V~~~L~~iy~k-----~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1522 RACQYCDAYTVHLKLLGIYEK-----SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHhcchHHHHHHHHHHHHH-----hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHh
Confidence 9998865 5678888999986 34899999999999876 478899999999999 8888888999999986
Q ss_pred c----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 385 A----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 385 ~----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
. .|.+...-.+.+-+. .+|.+.+...|+-.+...| .+-|.-+...-...|+.+.++..|++++..+
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk----~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFK----YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhh----cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 5 477777777777776 8999999999998888875 5566666777778899999999999999875
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.41 Score=53.08 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChh-HHHHHHHHHHc
Q 009801 296 ERNYTKALEWLTHAARQQ----------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAG-GHYNLGVMYYK 364 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~y~~ 364 (525)
..+.++|.+..++|+..= .-.|+.||-..| |.-+.-.+.|++|++..++. .+..|..+|..
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y--------G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k 1542 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY--------GTEESLKKVFERACQYCDAYTVHLKLLGIYEK 1542 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh--------CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 679999999999998641 234555555555 35567788999999987764 67789999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhcC
Q 009801 365 GIGVKRDVKLACKYFLVAANA-G-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRWALESYLKG 438 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~~~-~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~~g 438 (525)
...+++|.++|+..++. + ....|..++..+.. ..+-+.|...+++|+..-| .+....-+.+-+..|
T Consensus 1543 ----~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1543 ----SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred ----hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 89999999999998877 4 67788888888886 6667889999999997754 455566788899999
Q ss_pred CHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC----CHHHHHHHHHHH
Q 009801 439 DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG----NEHAALLIGDAY 514 (525)
Q Consensus 439 ~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y 514 (525)
|-+.++..|+-.+...+-..-.+..++-.. ++ .++.+.+...|++++..+ ...-.|..=.-|
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~e-------ik-------~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDME-------IK-------HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHH-------Hc-------cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 999999999988876432222233333322 11 345678999999999876 233444444455
Q ss_pred HcccccCC
Q 009801 515 YYGRVRHS 522 (525)
Q Consensus 515 ~~g~g~~~ 522 (525)
+.-.|.++
T Consensus 1681 Ek~~Gde~ 1688 (1710)
T KOG1070|consen 1681 EKSHGDEK 1688 (1710)
T ss_pred HHhcCchh
Confidence 55555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.34 Score=43.89 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
..+.-+++-|..-++. +|+++|+..|+...... ...++..++..+.. .+++++|+...++-+...
T Consensus 32 ~p~~~LY~~g~~~L~~-----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 32 LPASELYNEGLTELQK-----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCC
Confidence 3466677777777777 49999999999887652 25788889998888 889999999988888752
Q ss_pred ----CHHHHHHHHHHHHhCCCCCccCHHHHH---HHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 314 ----LYSAYNGIGYLYVKGYGVEKKNYTKAK---EYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 314 ----~~~a~~~lg~~~~~g~~~~~~~~~~A~---~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
-.-+++..|..++.+......|...+. .-|+..++. .|.+ +=+...-.+.....
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS------------------~Ya~dA~~~i~~~~ 163 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNS------------------RYAPDAKARIVKLN 163 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCC------------------cchhhHHHHHHHHH
Confidence 344677777777766544333444333 333333332 1110 00000000111111
Q ss_pred CHHH--HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 387 HQKA--FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 387 ~~~a--~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+..+ -..+|..|.. .+.+..|+..++..++.-+ .+++..+..+|+.+|-.++|... .+.+..+
T Consensus 164 d~LA~~Em~IaryY~k----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N 233 (254)
T COG4105 164 DALAGHEMAIARYYLK----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHHHHH----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhc
Confidence 1111 2345777877 8889999999999988742 56788888888888888887643 3344443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.061 Score=54.75 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHH---H-H----HHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHH
Q 009801 294 GVERNYTKALEWLTHAARQQLYS---A-Y----NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYY 363 (525)
Q Consensus 294 ~~~~~~~~A~~~~~~a~~~~~~~---a-~----~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~ 363 (525)
|..+|.+.+++.+.++.+.++.. + + +........+......+.+.|.+.++..... +.+--.+.-|.++.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34778888888888887765321 1 1 1122222222200244777888888877764 44455567788888
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh---HHHHHHHHHH
Q 009801 364 KGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW---SSLSRWALES 434 (525)
Q Consensus 364 ~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~l~~~~ 434 (525)
. .++.++|+..|++++... +.-..+.++.++.. ..++++|..++.+..+.+.+ .-.|..|..+
T Consensus 279 ~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 279 L----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred H----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8 888888888888877431 34467777888876 88899998888888877642 2344667778
Q ss_pred HhcCCH-------HHHHHHHHHHHH
Q 009801 435 YLKGDV-------GKAFLLYSRMAE 452 (525)
Q Consensus 435 ~~~g~~-------~~A~~~~~~a~~ 452 (525)
...|+. ++|..++.++-.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 888877 777777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0038 Score=40.11 Aligned_cols=40 Identities=20% Similarity=-0.024 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.++..+|.++...|++++|+.+|+++++. +++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45677788888888888888888888766 56777776663
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0021 Score=38.58 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 414 LYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 414 ~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
+|++|++.+| +.+++++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3678888864 678888888888888888875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.16 Score=51.67 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=109.3
Q ss_pred ccCHHHHHHHHHHHHhCCChhHH--------HHHHHHHHcCC-CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC
Q 009801 333 KKNYTKAKEYFEKAADNEEAGGH--------YNLGVMYYKGI-GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTG 401 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~~~a~--------~~lg~~y~~g~-~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g 401 (525)
.||-+.++..+.++.+.++..+- +.+.....-+. +...+.+.|...+...... +..--.+.-|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~- 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL- 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 35999999999999987543321 22333333332 1367788888888888775 556666777888887
Q ss_pred CCCcCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-hHHH--HHHHHHHHhhhCCC
Q 009801 402 VGLKKNLHMATALYKLVAERG------PWSSLSRWALESYLKGDVGKAFLLYSRMAELG-YEVA--QSNAAWILDKYGEG 472 (525)
Q Consensus 402 ~g~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~a--~~~la~~~~~~~~~ 472 (525)
.++.++|+++|++++... +.-.++.+++.+..+.++++|..++.+..+.. ...+ .+..|.++...|+.
T Consensus 280 ---~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 280 ---KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred ---hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999999999988543 23467799999999999999999999999873 3333 34466666664331
Q ss_pred ccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 473 SMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.......++|..+++++-.
T Consensus 357 ---------~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 357 ---------EEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ---------hhhhhhHHHHHHHHHHHHH
Confidence 1112344888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0081 Score=38.57 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLA 395 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~ 395 (525)
.++..+|..|.. .+++++|+..|+++++. +++.++..+|
T Consensus 2 ~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 345555555555 55555555555555544 4455554444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.092 Score=45.26 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
-.=|.-++. .+++.+|..-|..|++.=. .-.+.+.|.+... .+..+.|+.-..+|++++| ..|
T Consensus 99 K~EGN~~F~----ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 99 KKEGNELFK----NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHhhh----cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHHHHHHhhHhcCchhHHH
Confidence 345666677 8999999999999987622 2234455666665 7888999999999999986 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcChH
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAELGYE 456 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 456 (525)
+.+.+.+|-.+..+++|+.-|++.++.+..
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 788899999999999999999999887543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0052 Score=36.82 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.+++.+|.+|...+++++|+..|+++++++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5677888888888888888888888877654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.31 Score=50.23 Aligned_cols=258 Identities=15% Similarity=0.077 Sum_probs=135.3
Q ss_pred hHhHHHHHHHHHHHHhcCChH-HHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDPH-ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLY 183 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y 183 (525)
.+.+.+|+..+...-++.... .+-.++.-|.+ .+|++.|.++|.++-..++ --++|.+.|++..|.++-
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan----~~dfe~ae~lf~e~~~~~d------ai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYAN----KGDFEIAEELFTEADLFKD------AIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhcc----chhHHHHHHHHHhcchhHH------HHHHHhccccHHHHHHHH
Confidence 566899999888765554433 34467888888 8999999999988743222 234566666666666554
Q ss_pred HHHHHHHHhhhhccCCCCCchhhhhc-ccchhhhhHhhhccCCcHHHHHHHHHH---------HHcC----CHHHHHHHH
Q 009801 184 AELAEIAVNSFLISKDSPVIEPIRIH-NGAEENKGALRKSRGEDDEAFQILEYQ---------AQKG----NAGAMYKIG 249 (525)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~---------~~~~----~~~a~~~Lg 249 (525)
.+........... +...-.+. .+.......+|..-|.+++|++.|.+. +... -.+....+|
T Consensus 815 ~e~~~~e~t~~~y-----iakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 815 EECHGPEATISLY-----IAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFA 889 (1636)
T ss_pred HHhcCchhHHHHH-----HHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHH
Confidence 4331110000000 00000000 011122334455566667777776663 1221 234566677
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc----C--CCCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 009801 250 LFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR----G--AGVERNYTKALEWLTHAARQQ-LYSAYNGIG 322 (525)
Q Consensus 250 ~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~----g--~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg 322 (525)
.-|... ++.+.|...|-+|-+-..+.-++.-..++.. . .|..+-.+...-.+-+++-.. -...++..|
T Consensus 890 ~e~e~~-----g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~g 964 (1636)
T KOG3616|consen 890 KELEAE-----GDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHG 964 (1636)
T ss_pred HHHHhc-----cChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhh
Confidence 777655 4999999888776442211111111111111 0 000111111111111111110 111223333
Q ss_pred HHHHh-CCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 323 YLYVK-GYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 323 ~~~~~-g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
.+... ......+.++-|..+-+.+++...+..+..++..+.. .+++++|-+.|-.+++++
T Consensus 965 ll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~led----egk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 965 LLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLED----EGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhh----ccchhhhhHhhHHHhhcc
Confidence 33211 1111234667777777777777788888999999998 999999999998888774
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.43 Score=47.28 Aligned_cols=139 Identities=13% Similarity=-0.015 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---CCH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA---GHQ 388 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~ 388 (525)
-+...|+.+... .|+.++|++.++..++. ++-....+|-.++.. .+.+.++...+.+--+. +.+
T Consensus 260 y~KrRLAmCark-----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 260 YAKRRLAMCARK-----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hhHHHHHHHHHH-----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccccCCchH
Confidence 345678888776 56899999999998864 234577888899999 99999998888875443 233
Q ss_pred HHHHHHHHHHHcCCCC------------cCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHhcCCHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGL------------KKNLHMATALYKLVAERGPWSSLSRWAL--------ESYLKGDVGKAFLLYS 448 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~------------~~~~~~A~~~~~~a~~~~~~~a~~~l~~--------~~~~~g~~~~A~~~~~ 448 (525)
...+.-+.+-....+. .-....|++...+|++.+|-..-+.|+. .....|| .||+.|--
T Consensus 331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf 409 (539)
T PF04184_consen 331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAF 409 (539)
T ss_pred HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHH
Confidence 4344434333222211 1123457899999999987555554443 1333443 67766654
Q ss_pred HHHHc--ChHHHHHHHHH
Q 009801 449 RMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 449 ~a~~~--~~~~a~~~la~ 464 (525)
-.+.. ..+.|++.|--
T Consensus 410 ~hL~hWk~veGAL~lL~~ 427 (539)
T PF04184_consen 410 FHLQHWKRVEGALNLLHC 427 (539)
T ss_pred HHHHHHhcCHhHHHHHHH
Confidence 44433 23334444433
|
The molecular function of this protein is uncertain. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.2 Score=43.83 Aligned_cols=376 Identities=12% Similarity=0.010 Sum_probs=214.0
Q ss_pred HhhcCChHhHHHHHHHHHHHHh--cC---ChHHHHHHHHh-hhcCCCccCCHHHHHHHHHHHHcC----C-----CHHHH
Q 009801 99 AVTNGDVRVMEEATSEVESAAM--EG---DPHARSVLGFL-YGMGMMRERNKGKAFLYHHFAAEG----G-----NIQSK 163 (525)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~-y~~g~g~~~d~~~A~~~~~~a~~~----~-----~~~a~ 163 (525)
+.+...+.+..++++.++.... +. .+.....||.+ +.. ..|.+.|...+++|... + .-++.
T Consensus 16 ~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~y----T~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 16 HFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRY----TKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 3456668899999999988542 22 25566788885 334 78999999999999642 1 23677
Q ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCH
Q 009801 164 MAVAYTYLRQD-MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA 242 (525)
Q Consensus 164 ~~la~~y~~~~-~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 242 (525)
..|+.+|.... .++.+...++++++........ .......+..+.....++..|++.+.--++.-++
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w------------sckllfQLaql~~idkD~~sA~elLavga~sAd~ 159 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW------------SCKLLFQLAQLHIIDKDFPSALELLAVGAESADH 159 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh------------hHHHHHHHHHHHhhhccchhHHHHHhccccccch
Confidence 88999998876 8889999999998875432211 1122345667777888999998886554333221
Q ss_pred ------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCH------H-HHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 243 ------GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP------Q-SMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 243 ------~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~------~-a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
...+.+.......-+....+..++..--.+..+. +++ . -+..+-..|+.-.|..+--..+++.++
T Consensus 160 ~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ 239 (629)
T KOG2300|consen 160 ICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ 239 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence 2233333222211001111233333333333332 222 1 112233333332222333444555555
Q ss_pred HHHHcCCH-----------------------HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-------C-ChhHHH
Q 009801 308 HAARQQLY-----------------------SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-------E-EAGGHY 356 (525)
Q Consensus 308 ~a~~~~~~-----------------------~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-------~-~~~a~~ 356 (525)
+.+....+ +....|-..-..-.+...|-+++|.++-.+++.. + ......
T Consensus 240 ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srils 319 (629)
T KOG2300|consen 240 DSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILS 319 (629)
T ss_pred HHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 55542111 0111111111111123455778888887777643 1 333333
Q ss_pred --------HHHHHHHcCCCCcCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 009801 357 --------NLGVMYYKGIGVKRDVKLACKYFLVAANA------------GHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (525)
Q Consensus 357 --------~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~ 416 (525)
++..+-.- .+++.+|++......+- -.+....-+|..... .+.++.|..-|.
T Consensus 320 m~km~~LE~iv~c~lv----~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s----v~~~enAe~hf~ 391 (629)
T KOG2300|consen 320 MFKMILLEHIVMCRLV----RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS----VNCYENAEFHFI 391 (629)
T ss_pred HHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh----cchHHHHHHHHH
Confidence 34444444 78888888766554431 123445556666655 789999999999
Q ss_pred HHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------hHHHHHHHHHHHhhhCCCccccCCCCCC
Q 009801 417 LVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAELG---------YEVAQSNAAWILDKYGEGSMCMGESGFC 482 (525)
Q Consensus 417 ~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------~~~a~~~la~~~~~~~~~~~~~~~~~~~ 482 (525)
.|...-+ .....+++.+|...|+-+.-.+.++..-..+ ...+.+-.|...+.
T Consensus 392 ~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~-------------- 457 (629)
T KOG2300|consen 392 EATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK-------------- 457 (629)
T ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH--------------
Confidence 9987753 3345688999999887665555444432221 12234444444444
Q ss_pred CChHhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009801 483 TDAERHQCAHSLWWQASEQGNEHAALLIGDAY 514 (525)
Q Consensus 483 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 514 (525)
++++.||..+.++.++..|.+-.++|--++
T Consensus 458 --qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 458 --QNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred --hccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 789999999999999877655555544443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.01 Score=35.44 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|.+++.+|++++|+.+|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666777777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.014 Score=49.49 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCc
Q 009801 408 LHMATALYKLVAERGP--WSSLSRWALESYLKG----------DVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS 473 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g----------~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~ 473 (525)
++.|.+.++.....+| ++++++.|.++..+- -+++|+.-|++|+.. +..+|++++|..|..+|..-
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3555566665555553 344555555555432 233444444444443 45567777777776543210
Q ss_pred cccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 474 MCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
... ......+++|..+|++|++.+
T Consensus 87 ~d~-----~~A~~~F~kA~~~FqkAv~~~ 110 (186)
T PF06552_consen 87 PDT-----AEAEEYFEKATEYFQKAVDED 110 (186)
T ss_dssp --H-----HHHHHHHHHHHHHHHHHHHH-
T ss_pred CCh-----HHHHHHHHHHHHHHHHHHhcC
Confidence 000 001245677777777776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0066 Score=36.28 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.+++.+|.++...|++++|++.|++++++.|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4667777777777777777777777776543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.012 Score=35.18 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++++|.++..+|++++|+.+|++|++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.051 Score=46.21 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHh--CCChhHHHHHHHHHHcCC------CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC--
Q 009801 336 YTKAKEYFEKAAD--NEEAGGHYNLGVMYYKGI------GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVG-- 403 (525)
Q Consensus 336 ~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~------~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g-- 403 (525)
++.|.+.++.... ..+++++++.|..+..-. ....-+++|+.=|+.|+.+ +...+++++|.+|..--.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3456666665443 357788888888776610 0012345566666666655 577899999988754110
Q ss_pred -----CcCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009801 404 -----LKKNLHMATALYKLVAERGPWSSLSRWALES 434 (525)
Q Consensus 404 -----~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~ 434 (525)
....+++|..+|++|++.+|.+..++.+.-.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 1134788899999999999988877666533
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.012 Score=35.83 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 009801 162 SKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (525)
Q Consensus 162 a~~~la~~y~~~~~~~~A~~~y~~~~~~~ 190 (525)
++.+||.+|...|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56788999999999999999999976543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.014 Score=35.47 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.+||.++...|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999997643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.7 Score=42.29 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-- 312 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 312 (525)
+++...+|=..|... +||+.-+++.+..-.. ..+...+..|..+.+- ...||.++|+..+..++..
T Consensus 140 s~div~~lllSyRdi-----qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr-n~~gdre~Al~il~~~l~~~~ 213 (374)
T PF13281_consen 140 SPDIVINLLLSYRDI-----QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR-NKPGDREKALQILLPVLESDE 213 (374)
T ss_pred ChhHHHHHHHHhhhh-----hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHhccC
Confidence 455666666677655 6888888888776544 2445566666665552 2378999999999886654
Q ss_pred -CCHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHHHhCC
Q 009801 313 -QLYSAYNGIGYLYVKG----YGVEKKNYTKAKEYFEKAADNE 350 (525)
Q Consensus 313 -~~~~a~~~lg~~~~~g----~~~~~~~~~~A~~~~~~a~~~~ 350 (525)
.+++.+..+|.+|..- ........++|+.+|.++-+..
T Consensus 214 ~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 214 NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 3788899999988531 1112235677777777776654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.5 Score=42.56 Aligned_cols=172 Identities=13% Similarity=0.104 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC---
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--- 349 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--- 349 (525)
+....+|=..|.. .+||+.-+++.+..-... .+...+..|..+.+.. ..|+.++|+..+..++..
T Consensus 141 ~div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn--~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 141 PDIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN--KPGDREKALQILLPVLESDEN 214 (374)
T ss_pred hhHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc--cCCCHHHHHHHHHHHHhccCC
Confidence 4455566667887 889998888887765442 4556677777775432 256999999999996644
Q ss_pred CChhHHHHHHHHHHcCC-----CCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH-----
Q 009801 350 EEAGGHYNLGVMYYKGI-----GVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLV----- 418 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~-----~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a----- 418 (525)
.+++.+..+|.+|..-. ......++|+.||.++-+.. +...-.|++.++... ..+++...+.-+..
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~---g~~~~~~~el~~i~~~l~~ 291 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA---GHDFETSEELRKIGVKLSS 291 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc---CCcccchHHHHHHHHHHHH
Confidence 57889999999987631 12445899999999998874 334445556555431 11222221211111
Q ss_pred --HHcC---ChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHH
Q 009801 419 --AERG---PWS---SLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQS 460 (525)
Q Consensus 419 --~~~~---~~~---a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~ 460 (525)
.+.+ +.. ....+..+....||+++|+.+++++.... +.+|+
T Consensus 292 llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W~ 340 (374)
T PF13281_consen 292 LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAWE 340 (374)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccchh
Confidence 1222 111 23356667888999999999999999884 44454
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.81 Score=45.45 Aligned_cols=154 Identities=15% Similarity=0.034 Sum_probs=102.1
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--------------CC---------
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--------------GN--------- 159 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--------------~~--------- 159 (525)
..|.++-++.-++|. .++.++|+..|+.-... ...+|.++|++|++. |.
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEAS------TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc------CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 445666667667754 66789999999975443 678999999998641 11
Q ss_pred ----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 160 ----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 160 ----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.-+...||++..+.|+.++|++.++.+++..+... .-++..++...+...+.+.++...+.+
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~--------------~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD--------------NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc--------------hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 24567899999999999999999999987543211 113456777778888999999888887
Q ss_pred HHHc---CCHHHHHHHHHHHHhcCC-----------CCccCHHHHHHHHHHHHhcCC
Q 009801 236 QAQK---GNAGAMYKIGLFYYFGLR-----------GLRRDRTKALMWFSKAADKGE 278 (525)
Q Consensus 236 ~~~~---~~~~a~~~Lg~~y~~~~~-----------~~~~~~~~A~~~~~~a~~~~~ 278 (525)
-.+. ..+..+|.-+.+-.+... |.......|++...+|++.+.
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 5432 345555555554433310 111123457777888877543
|
The molecular function of this protein is uncertain. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.011 Score=35.38 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=20.8
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Q 009801 270 FSKAADK--GEPQSMEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 270 ~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
|++|++. +++.++++||.+|.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence 5566553 677777777777777 77777765
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.037 Score=51.58 Aligned_cols=93 Identities=19% Similarity=0.142 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHH
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQL 394 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 394 (525)
-.-|.-|+. +|.|++|+.+|.+++.. .++..+.+.+..|+. .+.+..|..-...|+.++ ...++.+.
T Consensus 101 KE~GN~yFK-----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 101 KERGNTYFK-----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHhhhhhhh-----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 344555554 66788888888777765 366677777777777 777777777777776653 44566666
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCCh
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (525)
+..-.. .++..+|.+-++.++++.|.
T Consensus 172 ~~AR~~----Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 MQARES----LGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHH----HhhHHHHHHhHHHHHhhCcc
Confidence 666655 67777777777777777654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.24 Score=42.78 Aligned_cols=93 Identities=17% Similarity=0.044 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChh-H
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAG-G 354 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~-a 354 (525)
+...++..+.. .+++++|+..++.++... .+-+-.+|+.+... .+.+++|++.+....+.+... .
T Consensus 91 aaL~lAk~~ve----~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-----~~k~D~AL~~L~t~~~~~w~~~~ 161 (207)
T COG2976 91 AALELAKAEVE----ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-----QKKADAALKTLDTIKEESWAAIV 161 (207)
T ss_pred HHHHHHHHHHh----hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHhccccccHHHHH
Confidence 34556666666 778888888888777543 23345667777665 557888887776655554333 3
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
....|+++.. .++.++|...|+++++.+
T Consensus 162 ~elrGDill~----kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 162 AELRGDILLA----KGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHhhhHHHH----cCchHHHHHHHHHHHHcc
Confidence 4456888888 888888888888888774
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.97 Score=39.12 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC-HHH
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL-YSA 317 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-~~a 317 (525)
+...++..+... +++++|+..++.++.. .+ +-+-.+|+.+... ++.+++|+..+....+.+. +..
T Consensus 91 aaL~lAk~~ve~-----~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~ 161 (207)
T COG2976 91 AALELAKAEVEA-----NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIV 161 (207)
T ss_pred HHHHHHHHHHhh-----ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHH
Confidence 445566666655 5999999999999865 22 3466789999999 9999999999888766653 344
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG 354 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a 354 (525)
.-..|.++.. +|+.++|+.-|+++++.+...+
T Consensus 162 ~elrGDill~-----kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 162 AELRGDILLA-----KGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHhhhHHHH-----cCchHHHHHHHHHHHHccCChH
Confidence 5667888876 7799999999999998854443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.033 Score=33.19 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.+++.+|.+|...|++++|++.|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567777788888888888888887777654
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.92 Score=41.10 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA------- 385 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------- 385 (525)
...+.+..++.. .+.+.-.+..+.+.++.+ +|.....||.+-.+ -+|.+-|..++++.-+.
T Consensus 178 ~Vmy~~~~~llG-----~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 178 RVMYSMANCLLG-----MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHhc-----chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhcc
Confidence 445555555543 458999999999999875 45677889999999 99999999999865422
Q ss_pred -CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----hHH
Q 009801 386 -GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG-----YEV 457 (525)
Q Consensus 386 -~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~~ 457 (525)
+......+.+.+|.. .+|+..|...|.+.+..++ +.+.++-+.++...|+..+|++..+.+++.. +..
T Consensus 249 q~~~~V~~n~a~i~lg----~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLG----QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHES 324 (366)
T ss_pred chhHHHHhhhhhheec----ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 234455666777765 8999999999999998885 5566688889999999999999999998874 334
Q ss_pred HHHHHHHHHh
Q 009801 458 AQSNAAWILD 467 (525)
Q Consensus 458 a~~~la~~~~ 467 (525)
..+||-.+|.
T Consensus 325 ~~~nL~tmyE 334 (366)
T KOG2796|consen 325 VLFNLTTMYE 334 (366)
T ss_pred HHHHHHHHHH
Confidence 5555666664
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.02 Score=33.77 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
+|++.+|.++...|++++|+..|+++++.-|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 4788899999999999999999999887543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.53 Score=42.61 Aligned_cols=143 Identities=12% Similarity=0.122 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHH
Q 009801 264 TKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (525)
Q Consensus 264 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~ 340 (525)
+..++.++|-+ ..+++.+..++.- .+.|.-.+..+.+.++.. .+.-...||.+-.. -||.+.|.
T Consensus 166 ESsv~lW~KRl----~~Vmy~~~~~llG----~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-----~GD~k~a~ 232 (366)
T KOG2796|consen 166 ESSIRLWRKRL----GRVMYSMANCLLG----MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-----IGDIKTAE 232 (366)
T ss_pred hhHHHHHHHHH----HHHHHHHHHHHhc----chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-----cccHHHHH
Confidence 33444444433 3567777777776 899999999999999875 56677888888866 57999999
Q ss_pred HHHHHHHhC--------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 341 EYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 341 ~~~~~a~~~--------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
.+|++.-+. +.--...+.+.+|.- .+++..|...|.+.+..+ ++.+.++-+.+... .++...
T Consensus 233 ~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg----~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~D 304 (366)
T KOG2796|consen 233 KYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG----QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLKD 304 (366)
T ss_pred HHHHHHHHHHhhhhccchhHHHHhhhhhheec----ccchHHHHHHHhhccccCCCchhhhchHHHHHHH----HHHHHH
Confidence 999965432 234456678888888 999999999999988774 56677777877776 889999
Q ss_pred HHHHHHHHHHcCChHHH
Q 009801 411 ATALYKLVAERGPWSSL 427 (525)
Q Consensus 411 A~~~~~~a~~~~~~~a~ 427 (525)
|++-.+.+++..|..+.
T Consensus 305 AiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 305 ALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHhccCCccch
Confidence 99999999999874443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.24 Score=42.83 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=66.2
Q ss_pred ccCHHHHHHHHHHHHhCCC-------hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCC
Q 009801 333 KKNYTKAKEYFEKAADNEE-------AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g 403 (525)
.|++++|..-|..|++.-. +-.+.+-|-+... ++..+.|+.-..+|++++ +..|+.+.+.+|..
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek--- 180 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAIEDCSKAIELNPTYEKALERRAEAYEK--- 180 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh---
Confidence 4577777777777776521 2234456666777 788889999999999885 56788888999988
Q ss_pred CcCCHHHHHHHHHHHHHcCChHHHH
Q 009801 404 LKKNLHMATALYKLVAERGPWSSLS 428 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (525)
...++.|++-|++..+.+|..-..
T Consensus 181 -~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 181 -MEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred -hhhHHHHHHHHHHHHHhCcchHHH
Confidence 789999999999999998755443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.18 Score=45.32 Aligned_cols=83 Identities=13% Similarity=-0.072 Sum_probs=59.5
Q ss_pred CcCCHHHHHHHHHHHHHc----C-C----hHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHc--------ChHHHH
Q 009801 404 LKKNLHMATALYKLVAER----G-P----WSSLSRWALESYLKGDVGKAFLLYSRM-------AEL--------GYEVAQ 459 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~----~-~----~~a~~~l~~~~~~~g~~~~A~~~~~~a-------~~~--------~~~~a~ 459 (525)
...++++|++.|+.|+-. + + +..+.++||+|-.+|+.+....++++| .+. +....+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 367888888888888633 1 1 335568899999888855555555444 432 235688
Q ss_pred HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 460 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+.+|.+..+ .+++++|++||.+.+...
T Consensus 169 YLigeL~rr----------------lg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRR----------------LGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHH----------------hCCHHHHHHHHHHHHcCC
Confidence 889999988 557899999999999866
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.12 Score=48.23 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRW 430 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l 430 (525)
.-.-|.-|+. ++.|++|+.+|.+++.. -++..+.+.+..|.. .+.+..|..-+..|+.++ ...|+.+.
T Consensus 100 iKE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 100 IKERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 3456888999 99999999999999887 367778899999998 899999999999999887 47899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 431 ALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+.+-..+|+..+|.+-++.++++.
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhC
Confidence 999999999999999999999874
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.062 Score=31.97 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|.++..+|++++|+.+|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778888888888888888888888875
|
... |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.37 Score=43.23 Aligned_cols=28 Identities=18% Similarity=0.012 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+.+|.+..+.|++++|..||.+.+..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4455566666666666666666666544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.2 Score=37.24 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+...++..+.. .+++++|+.++++++..+| ..++..+-.++...|+..+|+..|++....
T Consensus 62 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3456667777776 8999999999999999986 557888899999999999999999988643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=7 Score=38.88 Aligned_cols=61 Identities=18% Similarity=0.047 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 173 ~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.|-+++|.++-++++.............+++..+.+ ....+......-.|++.+|++....
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km--~~LE~iv~c~lv~~~~~~al~~i~d 348 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM--ILLEHIVMCRLVRGDYVEALEEIVD 348 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH--HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 467788888888887664433222222222222221 1122333334455666666655544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.91 E-value=5.8 Score=37.40 Aligned_cols=65 Identities=14% Similarity=-0.014 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 243 ~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
..+..|+.+|... +.....++|....+.+-+. ++....+.|..-...+ ..+.+.+.+.+.+.+..
T Consensus 85 ~iL~~La~~~l~~--~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEW--DTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHh
Confidence 4566788888777 3445666777777766443 4544445444444432 56777777777777654
|
It is also involved in sporulation []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.098 Score=30.71 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++++++|.++...|++++|+..|++.++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46788899999999999999999888765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=7.4 Score=37.62 Aligned_cols=178 Identities=15% Similarity=0.029 Sum_probs=87.8
Q ss_pred hHhHHHHHHHHHHHHh--cCChHHHH--HHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHh---ccccH
Q 009801 105 VRVMEEATSEVESAAM--EGDPHARS--VLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQS-KMAVAYTYL---RQDMH 176 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~--~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a-~~~la~~y~---~~~~~ 176 (525)
.||-..|.+.-+++.+ ..+.+.+. .-+..-.- .|+++.|.+-|+-.++ +++. +..|--+|+ ..|+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~----eG~~~~Ar~kfeAMl~--dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALL----EGDYEDARKKFEAMLD--DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHh----cCchHHHHHHHHHHhc--ChHHHHHhHHHHHHHHHhcccH
Confidence 4556666666666432 12322222 22222222 6777888777776664 2222 122222333 25778
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc-----CC---HHHHHHH
Q 009801 177 DKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK-----GN---AGAMYKI 248 (525)
Q Consensus 177 ~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~---~~a~~~L 248 (525)
+-|..+-+++.+..+...+. ....-.-.+..|+++.|+++.+..... +. ..+...-
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA----------------~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWA----------------ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHHHHHHHhhccCCchH----------------HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 88888877776654443211 112222345667777777777664221 11 1111111
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 249 GLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 249 g~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
+..-.. ..-|...|...-.++.++ +...+-..-+..++. .++..++-..++.+-+.
T Consensus 235 AkA~s~----ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 235 AKAMSL----LDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHH----hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhhhHHHHHHhc
Confidence 111111 112555666666565554 334444555555555 66666666666665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=93.59 E-value=2.3 Score=40.14 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhCC--ChhHHHHHHHH-HHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHH
Q 009801 335 NYTKAKEYFEKAADNE--EAGGHYNLGVM-YYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLH 409 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~-y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~ 409 (525)
..+.|...|++|.+.. ....+...|.+ |.. .++.+.|...|+++++. .+...+......+.. .++.+
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~----~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~ 87 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYC----NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT----CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHH
Confidence 4666666666666443 34455555555 333 45555566666666655 333333333333333 55666
Q ss_pred HHHHHHHHHHHcCChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 410 MATALYKLVAERGPWS-----SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 410 ~A~~~~~~a~~~~~~~-----a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.|...|++++..-+.. .+......-...|+.+.....++++.+.
T Consensus 88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 88 NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666543211 2223333344456666666666665554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.2 Score=35.64 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
...+...++..+... +++++|+.++++++.. -+..++..+-.+|.. .|+..+|+..|++...
T Consensus 61 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLEA-----GDYEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 345666777777666 4899999999988765 456788888888888 8899999998888753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.39 Score=42.80 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 335 NYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
.+..|+..|.+|+-.+ .+.-+.+-+.+|++ .++++....--++|++. +...+++.+|..... .+.++.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~----s~~~~e 96 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ----SKGYDE 96 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh----hccccH
Confidence 5555666666555443 22233455555555 55555555555555555 234455555555554 555555
Q ss_pred HHHHHHHHHH
Q 009801 411 ATALYKLVAE 420 (525)
Q Consensus 411 A~~~~~~a~~ 420 (525)
|+..+++|..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6665555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.25 Score=30.79 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++.++|.++...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999998764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=92.79 E-value=4.7 Score=38.07 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHH
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHY 356 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 356 (525)
+|..+.....+ .+..+.|...|++|.+.+ ....+...|.+-.. ..+|.+.|.+.|+++++. .+...+.
T Consensus 3 v~i~~m~~~~r----~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRR----TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH----hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 45566666777 778999999999998664 46777777777443 134788899999999987 5677777
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHH---HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQK---AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~---a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (525)
.....+.. .++.+.|...|++++.. .... ..+..=.-|+. ..|+.+.....++++.+.-+.
T Consensus 75 ~Y~~~l~~----~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~---~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 75 EYLDFLIK----LNDINNARALFERAISSLPKEKQSKKIWKKFIEFES---KYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHH----TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH---HHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH----hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhh
Confidence 77788888 89999999999999876 2222 22222222333 257888888888888887554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.42 E-value=20 Score=39.35 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
+.|..+..||..-.+++ ...+|++-|-+| ++|..+...-.+..+ .+.+++=++++..|-+
T Consensus 1102 n~p~vWsqlakAQL~~~-----~v~dAieSyika---dDps~y~eVi~~a~~----~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGG-----LVKDAIESYIKA---DDPSNYLEVIDVASR----TGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHHhcC-----chHHHHHHHHhc---CCcHHHHHHHHHHHh----cCcHHHHHHHHHHHHH
Confidence 45666666666666663 566666666433 455555555555555 6666666666666543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.35 E-value=12 Score=36.55 Aligned_cols=149 Identities=15% Similarity=0.036 Sum_probs=91.8
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER--- 421 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~--- 421 (525)
....+..++.+... .+.++.|...+.++...+ .+.....-+.+... .++..+|+..++..++.
T Consensus 145 ~~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 145 LAETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhh
Confidence 34556666666666 677777777777666544 45555555555555 56666666666666551
Q ss_pred C---------------------------------ChHHHHHHHHHHHhc------CCHHHHHHHHHHHHHc--ChHHHHH
Q 009801 422 G---------------------------------PWSSLSRWALESYLK------GDVGKAFLLYSRMAEL--GYEVAQS 460 (525)
Q Consensus 422 ~---------------------------------~~~a~~~l~~~~~~~------g~~~~A~~~~~~a~~~--~~~~a~~ 460 (525)
. ...++..+|...... ++.++++..|.+|++. ....++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 0 023455566655566 7899999999999987 4667899
Q ss_pred HHHHHHhhhCCCccccCCCCC-CCChHhHHHHHHHHHHHHhCCCHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGF-CTDAERHQCAHSLWWQASEQGNEHAA 507 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~a~ 507 (525)
.+|..+++.-+.........- ....+-...|+..|-+|+..|+..+.
T Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~ 344 (352)
T PF02259_consen 297 SWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVR 344 (352)
T ss_pred HHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchH
Confidence 999999774221110000000 01133446699999999998865333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.36 Score=30.05 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAV 191 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~ 191 (525)
.++.+||.+|...|++++|+.+++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 5788999999999999999999999987643
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.7 Score=37.96 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhcCC
Q 009801 369 KRDVKLACKYFLVAAN---AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG------PWSSLSRWALESYLKGD 439 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~---~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~~~~~g~ 439 (525)
...-+.|..-|.++.. ...++.++.||..|. ..|.++|+..+-++++.. +++....|+.+++.+|+
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455677777766543 368899999999987 589999999999999774 36678899999999999
Q ss_pred HHHHHHH
Q 009801 440 VGKAFLL 446 (525)
Q Consensus 440 ~~~A~~~ 446 (525)
++.|.-|
T Consensus 194 ~e~AYiw 200 (203)
T PF11207_consen 194 YEQAYIW 200 (203)
T ss_pred hhhhhhh
Confidence 9998765
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.81 Score=40.87 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=67.3
Q ss_pred CCccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCc
Q 009801 258 GLRRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~ 333 (525)
.+++.+..|+..|-+|+..+ .+.-+.+-+.+|++ .++++.+..-.++|++.. ...+.+.+|.+... .
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-----s 91 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-----S 91 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-----h
Confidence 34568899999999998764 44556778888988 889999999999998874 67788999998876 4
Q ss_pred cCHHHHHHHHHHHHhC
Q 009801 334 KNYTKAKEYFEKAADN 349 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~ 349 (525)
..+++|++.+++|.+.
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 5889999999999654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.50 E-value=20 Score=37.50 Aligned_cols=82 Identities=10% Similarity=0.095 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 358 (525)
..++.++|..+.. ...+++|.++|.+.-... +...++.+ ..++++-..+-++. ..+.+.+-.+
T Consensus 796 e~A~r~ig~~fa~----~~~We~A~~yY~~~~~~e------~~~ecly~-----le~f~~LE~la~~L--pe~s~llp~~ 858 (1189)
T KOG2041|consen 796 EDAFRNIGETFAE----MMEWEEAAKYYSYCGDTE------NQIECLYR-----LELFGELEVLARTL--PEDSELLPVM 858 (1189)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHhccchH------hHHHHHHH-----HHhhhhHHHHHHhc--CcccchHHHH
Confidence 4677888888877 778888888888764332 12222222 11222222111111 1466677778
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHH
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
|.++.+ .+..++|++.|-+
T Consensus 859 a~mf~s----vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 859 ADMFTS----VGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHh----hchHHHHHHHHHh
Confidence 888888 8888888877654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.6 Score=37.90 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHHc----------CC----------CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCC
Q 009801 141 ERNKGKAFLYHHFAAE----------GG----------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~----------~~----------~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~ 200 (525)
.+++++|...|+.|+. ++ ..+-+.+.+.+++..++|-++++....++.
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~------------ 258 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR------------ 258 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh------------
Confidence 6778888887777752 12 335567777778777887777777666644
Q ss_pred CCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCH
Q 009801 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP 279 (525)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~ 279 (525)
..+++..|++.-|..+..-. |..+|..-|.++++.+.+
T Consensus 259 ------------------------------------~~~~nvKA~frRakAhaa~W-----n~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 ------------------------------------HHPGNVKAYFRRAKAHAAVW-----NEAEAKADLQKVLELDPS 296 (329)
T ss_pred ------------------------------------cCCchHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHhcChh
Confidence 35577888999888887765 889999999999887643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.87 E-value=29 Score=38.18 Aligned_cols=193 Identities=17% Similarity=0.095 Sum_probs=117.0
Q ss_pred hhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 009801 216 KGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 216 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~ 295 (525)
.+.+-...+-+++|+..|++--- +..|...|-. .. ++.+.|.++-++ .+.+..|..+|..-.+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~--n~~A~~VLie---~i-----~~ldRA~efAe~---~n~p~vWsqlakAQL~---- 1116 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM--NVSAIQVLIE---NI-----GSLDRAYEFAER---CNEPAVWSQLAKAQLQ---- 1116 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc--cHHHHHHHHH---Hh-----hhHHHHHHHHHh---hCChHHHHHHHHHHHh----
Confidence 34444556677888888876321 2222222211 11 366666665444 3668899999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCCCcCCHHH
Q 009801 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIGVKRDVKL 374 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~~~~~ 374 (525)
.+...+|++.|-+| +++..+..+-..-.. .+++++-++++..|-+. ..+..-..|-..|.. .++..+
T Consensus 1117 ~~~v~dAieSyika---dDps~y~eVi~~a~~-----~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk----t~rl~e 1184 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA---DDPSNYLEVIDVASR-----TGKYEDLVKYLLMARKKVREPYIDSELIFAYAK----TNRLTE 1184 (1666)
T ss_pred cCchHHHHHHHHhc---CCcHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH----hchHHH
Confidence 78889999888764 677777777777665 46999999999988765 233334444445555 444444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 375 ACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 375 A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
-..+ +...+.--.-..|.-... .+.|+.|.-+|.-. .-+..|+..+..+|+|..|...-++|-
T Consensus 1185 lE~f----i~gpN~A~i~~vGdrcf~----~~~y~aAkl~y~~v------SN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1185 LEEF----IAGPNVANIQQVGDRCFE----EKMYEAAKLLYSNV------SNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHH----hcCCCchhHHHHhHHHhh----hhhhHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3332 222122222334443333 56777776666432 335567778888888888877766663
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.69 E-value=12 Score=34.82 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHH
Q 009801 141 ERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAE 185 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~ 185 (525)
.++...|...|+.+... ++..+...|+.+|...|+.+.|...+..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 44556666666655543 3455666666666666666666555544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.54 E-value=2.5 Score=37.06 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC------ChhHHHHHHHHHHcCCCC
Q 009801 298 NYTKALEWLTHAARQ---QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE------EAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 298 ~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~~~ 368 (525)
+-+.|..-|.++-.. ..++.++.||..|.. .|.++++.++.++++.. +++.+..|+.+|..
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k------rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~---- 190 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTK------RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK---- 190 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----
Confidence 445577666666443 367888888888854 38888888888887652 56677788888888
Q ss_pred cCCHHHHHHH
Q 009801 369 KRDVKLACKY 378 (525)
Q Consensus 369 ~~~~~~A~~~ 378 (525)
.+++++|.-|
T Consensus 191 ~~~~e~AYiw 200 (203)
T PF11207_consen 191 LKNYEQAYIW 200 (203)
T ss_pred hcchhhhhhh
Confidence 8888877654
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=90.40 E-value=4.5 Score=31.96 Aligned_cols=81 Identities=16% Similarity=0.015 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHHHHHcC---C-----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C------hHH
Q 009801 405 KKNLHMATALYKLVAERG---P-----------WSSLSRWALESYLKGDVGKAFLLYSRMAEL-------G------YEV 457 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~---~-----------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~------~~~ 457 (525)
.+-+++|..-+++|.+.. | .-.+..|+..+..+|+|++++..-++++.. . -..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 567888888888887652 1 224557788899999999988888888742 1 234
Q ss_pred HHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 458 AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 458 a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
+.++-|..+.. .++.++|+..|+++.++
T Consensus 102 aVfsra~Al~~----------------~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEG----------------LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHH----------------TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----------------cCChHHHHHHHHHHHHH
Confidence 55666777766 56889999999998763
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.47 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++.+|.++...|++++|+.+++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45678888888888899998888888765
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.69 E-value=3.6 Score=38.77 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
-.=|.-|.. .++|..|+..|.+.+.. ++ +..+.|.+.+-.. .+|+..|+.-..+|+..+| ..++
T Consensus 85 KeeGN~~fK----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 85 KEEGNEYFK----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred HHHhHHHHH----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhhhh
Confidence 345777777 78888888888888765 22 3344555555554 6788888888888887764 5677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++-+.+++.+.++++|..|.+..+..
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 77788888888888888888777655
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.81 Score=42.34 Aligned_cols=78 Identities=18% Similarity=0.057 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHH
Q 009801 87 GSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQS 162 (525)
Q Consensus 87 a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a 162 (525)
+-..-++..+..+.+....|+.++|..+|+-+ ..|.+++++..+|.+-.. .++.-+|-.+|-+|+. .+|.+|
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHH
Confidence 33444444454444555578899999999985 478899999999998887 7889999999999865 578877
Q ss_pred HHHHHH
Q 009801 163 KMAVAY 168 (525)
Q Consensus 163 ~~~la~ 168 (525)
+.+-+.
T Consensus 187 LvnR~R 192 (472)
T KOG3824|consen 187 LVNRAR 192 (472)
T ss_pred Hhhhhc
Confidence 766543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.4 Score=44.59 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHH
Q 009801 369 KRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A 443 (525)
.++...|+..+..|.... ......+|+.+... .+-...|-..+.+++.+.. +-.++.+|..+..+.+...|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 444445555544444331 11223344444433 2233344444444444432 22333444444445555555
Q ss_pred HHHHHHHHHc
Q 009801 444 FLLYSRMAEL 453 (525)
Q Consensus 444 ~~~~~~a~~~ 453 (525)
++.+++|++.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 5555555443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.73 Score=25.43 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYS 448 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~ 448 (525)
.+.+.+|.++...|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.23 E-value=15 Score=31.33 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=76.9
Q ss_pred cCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCccC
Q 009801 261 RDRTKALMWFSKAADKGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKN 335 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~ 335 (525)
+..++|+.-|...-+-|. .-+.+..|.+..+ +++...|+..|..+.... .|.....++++-.-=.-+..+.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 367778888877766532 3467778888887 888888888888876543 3333333333211000022456
Q ss_pred HHHHHHHHHHHHhCCCh---hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 009801 336 YTKAKEYFEKAADNEEA---GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQKAFYQLA 395 (525)
Q Consensus 336 ~~~A~~~~~~a~~~~~~---~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~ 395 (525)
|+....-.+.....+++ .+--.||..-.+ .+++.+|..||.+.++- +-+....+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~Da~aprnirqRA 207 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIANDAQAPRNIRQRA 207 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHccccCcHHHHHHH
Confidence 76666665555444433 355667777777 78888888888877654 3343333333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=88.00 E-value=0.75 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
++.+|.++.. .+++++|+.+++++++.
T Consensus 4 ~~~~a~~~~~----~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLK----LGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHcc
Confidence 4445555554 45555555555555443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.88 E-value=14 Score=37.27 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH
Q 009801 157 GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 157 ~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
.+++.-+..||...+.+|+++-|.+.|+++-+ ...+..+|...|+.++-.+..+.+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------------------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD------------------------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------------------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------------------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 35667777888888888888888888877633 233444556666655544444444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (525)
...++....+.-+.+. +|.++.++.+.+
T Consensus 400 ~~~~~~n~af~~~~~l--------gd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGDINIAFQAALLL--------GDVEECVDLLIE 427 (443)
T ss_dssp HHTT-HHHHHHHHHHH--------T-HHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHc--------CCHHHHHHHHHH
Confidence 4455544444433332 366666655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.8 Score=43.81 Aligned_cols=83 Identities=18% Similarity=0.096 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCC
Q 009801 333 KKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKN 407 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~ 407 (525)
.||...|+++++.|.... ......+|+.+... .+-...|-.++.+++.+. .+.-.+-+|.+|.. .+|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~----l~~ 691 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA----LKN 691 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHHHHHHHHHhhcccCchHHHhcchhHHH----Hhh
Confidence 446666666666665442 22344566666665 555556666666666553 34445555666665 666
Q ss_pred HHHHHHHHHHHHHcCC
Q 009801 408 LHMATALYKLVAERGP 423 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~~ 423 (525)
.++|++.++.|++..+
T Consensus 692 i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTT 707 (886)
T ss_pred hHHHHHHHHHHHhcCC
Confidence 6666666666666653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.65 E-value=24 Score=35.77 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
++.-|..||..... +++.+-|..+|++
T Consensus 346 ~~~~W~~Lg~~AL~----~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALR----QGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHH----TTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHh
Confidence 34444445555444 4455555444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.65 E-value=29 Score=33.81 Aligned_cols=286 Identities=14% Similarity=0.066 Sum_probs=184.1
Q ss_pred cCCHHHHHHHHHHHHcC--CCHHHHHHH--HHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhh
Q 009801 141 ERNKGKAFLYHHFAAEG--GNIQSKMAV--AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENK 216 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~--~~~~a~~~l--a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (525)
-||-..|.+.-.++... .+.+.+..| +..-+-.|+++.|.+-|+-.+.-.... ..+ ...+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtR-----------llG-----LRgL 160 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETR-----------LLG-----LRGL 160 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHH-----------HHh-----HHHH
Confidence 77888998888887642 344444333 556666899999999998775421110 000 1122
Q ss_pred hHhhhccCCcHHHHHHHHHHHHc--CCHHHHH-HHHHHHHhcCCCCccCHHHHHHHHHHHHhc-----CCH---HHHHHH
Q 009801 217 GALRKSRGEDDEAFQILEYQAQK--GNAGAMY-KIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEP---QSMEFL 285 (525)
Q Consensus 217 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~a~~-~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~---~a~~~L 285 (525)
..--...|..+.|+.+-+.+... .-+-+.. .|...+..+ |++.|+++....... +.+ .+-..-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g------dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG------DWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 22235789999999998887665 3343333 344444333 999999998875432 211 122221
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Q 009801 286 GEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMY 362 (525)
Q Consensus 286 g~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y 362 (525)
+..-.. +.-|...|...-.++.+.. ...+...-+..++. .++..++-+.++.+-+.. +|+ ++.+|
T Consensus 235 AkA~s~---ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-----d~~~rKg~~ilE~aWK~ePHP~----ia~lY 302 (531)
T COG3898 235 AKAMSL---LDADPASARDDALEANKLAPDLVPAAVVAARALFR-----DGNLRKGSKILETAWKAEPHPD----IALLY 302 (531)
T ss_pred HHHHHH---hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-----ccchhhhhhHHHHHHhcCCChH----HHHHH
Confidence 221111 2457888888888887763 56666666777766 568999999999988763 333 34445
Q ss_pred HcCCCCcCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHh
Q 009801 363 YKGIGVKRDVKLACKYFLVA-----ANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-SSLSRWALESYL 436 (525)
Q Consensus 363 ~~g~~~~~~~~~A~~~~~~a-----~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-~a~~~l~~~~~~ 436 (525)
.. .+.-+.++.-++++ ++.++.++...++..-.. .+++..|..--+.+....+- .++..++.+-..
T Consensus 303 ~~----ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld----a~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeA 374 (531)
T COG3898 303 VR----ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD----AGEFSAARAKAEAAAREAPRESAYLLLADIEEA 374 (531)
T ss_pred HH----hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh----ccchHHHHHHHHHHhhhCchhhHHHHHHHHHhh
Confidence 44 22223333333333 344788888888888776 78999999999999888874 455677877665
Q ss_pred c-CCHHHHHHHHHHHHHcChHHHHHHHHHHHhh
Q 009801 437 K-GDVGKAFLLYSRMAELGYEVAQSNAAWILDK 468 (525)
Q Consensus 437 ~-g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~ 468 (525)
. ||-.+...|+.+++...-..++...|.....
T Consensus 375 etGDqg~vR~wlAqav~APrdPaW~adg~vse~ 407 (531)
T COG3898 375 ETGDQGKVRQWLAQAVKAPRDPAWTADGVVSEA 407 (531)
T ss_pred ccCchHHHHHHHHHHhcCCCCCcccccCccccc
Confidence 4 9999999999999987555566666655444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.54 E-value=7.3 Score=33.80 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---- 349 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---- 349 (525)
-.++..+|..|.. .||.++|++.|.++.+.. ..+.++.+-.+... .+|+.....+..++-..
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-----~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-----FGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHhcc
Confidence 3567778888888 888888888888876543 23333444443332 34777777776666432
Q ss_pred CChhHH----HHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 350 EEAGGH----YNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 350 ~~~~a~----~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
++.+.. ..-|..+.. .+++.+|...|-.+
T Consensus 107 ~d~~~~nrlk~~~gL~~l~----~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLA----QRDFKEAAELFLDS 139 (177)
T ss_pred chHHHHHHHHHHHHHHHHH----hchHHHHHHHHHcc
Confidence 222211 223444444 55666655555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.53 E-value=17 Score=31.07 Aligned_cols=124 Identities=18% Similarity=0.132 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhCC----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-CCH-----HHHHHHHHHHHcCCCC
Q 009801 335 NYTKAKEYFEKAADNE----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-GHQ-----KAFYQLAKMFHTGVGL 404 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~-----~a~~~l~~~y~~g~g~ 404 (525)
..++|+.-|....+.+ ..-+.+..|.+..+ .++...|+.+|..+..- ..| .+...-+.++..
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD---- 144 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD---- 144 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc----
Confidence 5667777776666553 23356777888888 88888888888876654 222 233334445554
Q ss_pred cCCHHHHHHHHHHHHHcC-C--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-ChHHHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERG-P--WSSLSRWALESYLKGDVGKAFLLYSRMAEL-GYEVAQSNAAWIL 466 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~-~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~a~~~la~~~ 466 (525)
.+.|+.-..-.+....-+ + ..+--.||..-++.|++.+|..||.+.+.- +.|...-+-+.+.
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~m 210 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIM 210 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHH
Confidence 666666555444333222 2 335557888899999999999999888764 3444444444433
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.09 E-value=9.6 Score=34.43 Aligned_cols=63 Identities=22% Similarity=0.086 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
..+.+...+++. .+++-+++..-...+.. ++..|++..|.+... .=+.++|..-++++++++|
T Consensus 231 pLllNy~QC~L~----~~e~yevleh~seiL~~~~~nvKA~frRakAhaa----~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 231 PLLLNYCQCLLK----KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA----VWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHhHHHHHhh----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCh
Confidence 344555556655 55665666555555544 555666666665554 4456666666666666655
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.87 E-value=28 Score=32.80 Aligned_cols=15 Identities=20% Similarity=-0.046 Sum_probs=13.4
Q ss_pred hHhHHHHHHHHHHHH
Q 009801 485 AERHQCAHSLWWQAS 499 (525)
Q Consensus 485 ~~~~~~A~~~~~~a~ 499 (525)
.++|.+|+.||+-|+
T Consensus 259 ~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 259 AKNYDEAIEWYELAL 273 (278)
T ss_pred hcCHHHHHHHHHHHH
Confidence 779999999999766
|
It is also involved in sporulation []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.87 E-value=3.6 Score=26.20 Aligned_cols=30 Identities=27% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcChHH
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAELGYEV 457 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 457 (525)
+.++.+|..+|+.+.|+..+++.++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 568888899999999999998888766543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.96 E-value=9.8 Score=33.01 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----G 422 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~ 422 (525)
..++..+|..|.+ .||.++|++.|.++-+.. . .+.+.++-.+... .+|+.....+..++-.. +
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhccc
Confidence 4577888899988 889999999998876652 1 2233333333333 67888888888887533 2
Q ss_pred ChHHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 423 PWSSLS----RWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 423 ~~~a~~----~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++.... .-|......++|.+|-..|-.+..
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 333322 336667778899999888876653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.92 E-value=5.5 Score=26.57 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+.++..+++.|+|++|..+.+.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4567788888888888888888888766
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.36 E-value=60 Score=35.23 Aligned_cols=83 Identities=12% Similarity=0.017 Sum_probs=56.7
Q ss_pred hHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHH
Q 009801 105 VRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAV 180 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~ 180 (525)
.+++.+|+....+.. .|+...|...-|....+ .+..++|...++.... ..+...+-.+-.+|...+.+++|.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 667888888888843 33445555555666666 6677778766665433 246677777778888888888888
Q ss_pred HHHHHHHHHHH
Q 009801 181 KLYAELAEIAV 191 (525)
Q Consensus 181 ~~y~~~~~~~~ 191 (525)
..|+++....|
T Consensus 98 ~~Ye~~~~~~P 108 (932)
T KOG2053|consen 98 HLYERANQKYP 108 (932)
T ss_pred HHHHHHHhhCC
Confidence 88888766543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.15 E-value=4.4 Score=38.24 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+-.=|+-|+. .++|..|+..|.+.+.. ++ +..+.+-+-+-.. .+++..|+.-..+++.. .+..
T Consensus 84 ~KeeGN~~fK-----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 84 YKEEGNEYFK-----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHhHHHHH-----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhh
Confidence 3446777776 55999999999999976 33 3456778888877 89999999999999877 6888
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
++++-+.++.. .+.++.|+.|.+..++.+
T Consensus 155 a~~R~Akc~~e----Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 155 AYIRGAKCLLE----LERFAEAVNWCEEGLQID 183 (390)
T ss_pred hhhhhhHHHHH----HHHHHHHHHHHhhhhhhh
Confidence 99999999987 899999999999887765
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.52 E-value=1.5 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
.+...||.++.. .|++++|...++
T Consensus 2 ~a~~~la~~~~~----~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLA----QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHh
Confidence 456677777777 777777776664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.29 E-value=42 Score=32.57 Aligned_cols=144 Identities=14% Similarity=0.035 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN- 349 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~- 349 (525)
.....+..++.+... .|.++.|...+.++.... .+.....-+.+... .|+..+|+..++..++.
T Consensus 144 ~~~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-----~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-----QGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Confidence 345678888999988 999999999999988765 56777777777765 56889999999888772
Q ss_pred --CC--hhHHHHHHHHH-HcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCcCCHHHHHHHHHHHHHcC
Q 009801 350 --EE--AGGHYNLGVMY-YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHT--GVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 350 --~~--~~a~~~lg~~y-~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~--g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
.. +.....+.... ..... ... ........ ...+.++..+|..... ..-...+.+.++..|+.+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~---~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~ 288 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEV-ISS--TNLDKESK---ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD 288 (352)
T ss_pred hhhccccccHHHHhhcccccccc-ccc--cchhhhhH---HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC
Confidence 11 11111111111 00000 000 00000000 0012333334443333 0012478899999999999887
Q ss_pred C--hHHHHHHHHHHH
Q 009801 423 P--WSSLSRWALESY 435 (525)
Q Consensus 423 ~--~~a~~~l~~~~~ 435 (525)
+ ..+++.+|..+.
T Consensus 289 ~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 289 PSWEKAWHSWALFND 303 (352)
T ss_pred hhHHHHHHHHHHHHH
Confidence 5 446666666544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.02 E-value=37 Score=31.78 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
++.++.+.++..+.. .++.+.|.+.+-..+..
T Consensus 234 dd~~aa~~lA~~~~~----~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 234 DDVEAALALADQLHL----VGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 556666666666665 66666666665555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.61 E-value=63 Score=34.08 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC------CCCCCHHHHHHHHHHHHHc
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGA------GVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~------~~~~~~~~A~~~~~~a~~~ 312 (525)
.-+|.-+..|+..-.... ++.-|...|.+..+-.-...--+|+.++.... +.-|.+++|.+.|..+-+.
T Consensus 689 nPHprLWrllAe~Al~Kl-----~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKL-----ALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHH-----hhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence 356788888887765442 66777777766544322223334444443321 1246788888887766444
Q ss_pred CC-HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH----hCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 313 QL-YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA----DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 313 ~~-~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~----~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
+- .+....|| |+-...++++..- +.+...|+.++|..+.. ....++|.++|.+.
T Consensus 764 DLAielr~klg------------DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~----~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 764 DLAIELRKKLG------------DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE----MMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhHHHHHhhh------------hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 31 12222222 3333333333311 11234566777777777 77777777777654
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.25 E-value=3.2 Score=41.18 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANAGHQ--KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
.++++.|+..|.+|++++.. ....+-+..+.. .+++..|+.-..+|++.+| ..++++.|.+....+.+.+|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 56777888888888877442 223334455554 6777888888888887775 446667777777777777777
Q ss_pred HHHHHHHHc
Q 009801 445 LLYSRMAEL 453 (525)
Q Consensus 445 ~~~~~a~~~ 453 (525)
..|++.+..
T Consensus 93 ~~l~~~~~l 101 (476)
T KOG0376|consen 93 LDLEKVKKL 101 (476)
T ss_pred HHHHHhhhc
Confidence 777776654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.56 E-value=1.4 Score=41.53 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCChh--HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 335 NYTKAKEYFEKAADNEEAG--GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~~~~~--a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
++++|+..|..+++.+.+. .+..-+.++.. .+....|++-+..|+.++ ....+-.-+..... .+++++
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl----lg~~e~ 200 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL----LGNWEE 200 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeee----ccCCchhhhhhhhhhccCcccccccchhhHHHHH----hhchHH
Confidence 4444555555554443222 22334444444 555555555555555442 22222233333333 455555
Q ss_pred HHHHHHHHHHcC
Q 009801 411 ATALYKLVAERG 422 (525)
Q Consensus 411 A~~~~~~a~~~~ 422 (525)
|...+..+++++
T Consensus 201 aa~dl~~a~kld 212 (377)
T KOG1308|consen 201 AAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHhcc
Confidence 555555555554
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.51 E-value=1.3 Score=41.86 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=52.0
Q ss_pred cCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANAGHQ--KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS--SLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~l~~~~~~~g~~~~A~ 444 (525)
.+.+++|+..|.+++.++.. ..+.+-+.++.. .+....|++-+..|+++++.. .+-..|.....+|++++|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeee----ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 66677777777777666433 333344555555 666677777777777766433 3335566666677777777
Q ss_pred HHHHHHHHcChH
Q 009801 445 LLYSRMAELGYE 456 (525)
Q Consensus 445 ~~~~~a~~~~~~ 456 (525)
..+..+++.+..
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 777777766543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.30 E-value=3.5 Score=40.87 Aligned_cols=92 Identities=16% Similarity=0.050 Sum_probs=70.8
Q ss_pred ccCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCH
Q 009801 333 KKNYTKAKEYFEKAADNEE--AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNL 408 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~ 408 (525)
..+++.|+..|.+|++.+. +.-+-+-+..+.. ..++..|+.-..+|++.+ ...+++.-|.+... .+.+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~----l~~~ 88 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMA----LGEF 88 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHh----HHHH
Confidence 4589999999999999854 4444567788888 999999999999999885 34555555666665 6788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 009801 409 HMATALYKLVAERGPWSSLSRWAL 432 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~~~a~~~l~~ 432 (525)
.+|+.-|++.....|.+.....+.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHH
Confidence 888888888888877666554443
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=80.73 E-value=27 Score=27.82 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.++.+..+...|+.++|+..|+.+.++
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4566777888899999999999998775
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=80.57 E-value=2.8 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
+.++.+|..+.+.++|++|..+.+.+++..|.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 357888999999999999999999998886655
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=80.10 E-value=1.1e+02 Score=34.35 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=67.8
Q ss_pred CCCCCccccCCC-----CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hcCChHHHHHHHHhhhcCCCccC
Q 009801 69 PGSWSPVFEPSI-----DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-MEGDPHARSVLGFLYGMGMMRER 142 (525)
Q Consensus 69 ~~~a~~~~~~~~-----~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~g~~~ 142 (525)
|++|...|++.. +..--+|+|..|...+..+-..+++..+++|+..|++.- .++-|--+..-|.+|.. .+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 566 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQR----LG 566 (932)
T ss_pred HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHH----hh
Confidence 556666666662 223367899999999999888899999999999999954 55777777778888998 89
Q ss_pred CHHHHHHHHHHHHcC
Q 009801 143 NKGKAFLYHHFAAEG 157 (525)
Q Consensus 143 d~~~A~~~~~~a~~~ 157 (525)
++++-++.|..|.+.
T Consensus 567 ~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 567 EYNEEIKSLLLALKR 581 (932)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999873
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 525 | ||||
| 2xm6_A | 490 | Crystal Structure Of The Protein Corresponding To L | 2e-20 | ||
| 1ouv_A | 273 | Helicobacter Cysteine Rich Protein C (Hcpc) Length | 7e-15 | ||
| 1ouv_A | 273 | Helicobacter Cysteine Rich Protein C (Hcpc) Length | 1e-10 |
| >pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus C5321 From Cft073 E.Coli Strain Length = 490 | Back alignment and structure |
|
| >pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc) Length = 273 | Back alignment and structure |
|
| >pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc) Length = 273 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 2e-87
Identities = 102/427 (23%), Positives = 175/427 (40%), Gaps = 78/427 (18%)
Query: 103 GDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQS 162
+ +++ A G+ A+ LG+ Y G ++ +A + AAE G +
Sbjct: 18 SLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPA 77
Query: 163 KMAVAYTYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217
+ + Y+ QD + +AV Y
Sbjct: 78 EYVLGLRYMNGEGVPQD-YAQAVIWY---------------------------------- 102
Query: 218 ALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG 277
+K+ A KG A +G+ Y+ G G++ D+ +++ WF AA++G
Sbjct: 103 --KKA--------------ALKGLPQAQQNLGVMYHEG-NGVKVDKAESVKWFRLAAEQG 145
Query: 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYT 337
+ +G+ Y G GV R+Y A EW + AA Q + N +GY+Y +G GVE+ N
Sbjct: 146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER-NDA 204
Query: 338 KAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
+ +++ K+A + + G +L MYY GIGV +D + F +A G+ A ++L +
Sbjct: 205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264
Query: 398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG------DVGKAFLLYSRMA 451
G+ K A Y+ AE+G A Y KG + +A Y++ A
Sbjct: 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAH-LYDKGAEGVAKNREQAISWYTKSA 323
Query: 452 ELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIG 511
E G AQ+N I + G E H+ A + +A+ +G + A +G
Sbjct: 324 EQGDATAQANLGAIYFRLG-------------SEEEHKKAVEWFRKAAAKGEKAAQFNLG 370
Query: 512 DAYYYGR 518
+A G+
Sbjct: 371 NALLQGK 377
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 1e-61
Identities = 95/407 (23%), Positives = 176/407 (43%), Gaps = 79/407 (19%)
Query: 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR-----QD 174
M+ A + G + + AE G ++++ + Y Y + +D
Sbjct: 1 MKKSLLAVMLTGLFALVSL--PALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKD 58
Query: 175 MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE 234
+A+ + R++
Sbjct: 59 -LTQAMDWF------------------------------------RRA------------ 69
Query: 235 YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAG 294
A++G A Y +GL Y G G+ +D +A++W+ KAA KG PQ+ + LG +Y G G
Sbjct: 70 --AEQGYTPAEYVLGLRYMNG-EGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNG 126
Query: 295 VERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG 354
V+ + ++++W AA Q S +G Y +G GV ++Y A+E++ KAA+
Sbjct: 127 VKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT-RDYVMAREWYSKAAEQGNVWS 185
Query: 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATAL 414
LG MY +G+GV+R+ ++ +++ +A +G + LA M++ G+G+ ++ + L
Sbjct: 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVL 245
Query: 415 YKLVAERGPWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWILDK 468
+ AE+G +S++++ L +G + KA Y + AE G Q A + DK
Sbjct: 246 FSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK 303
Query: 469 YGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYY 515
G G + E+ A S + +++EQG+ A +G Y+
Sbjct: 304 --------GAEGVAKNREQ---AISWYTKSAEQGDATAQANLGAIYF 339
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 8e-61
Identities = 85/364 (23%), Positives = 155/364 (42%), Gaps = 35/364 (9%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----- 172
AA +G + +G Y G R+ A ++ AAE GN+ S + Y Y R
Sbjct: 141 AAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVE 200
Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL-RKSRG---EDDE 228
++ + + Y + A + + + G + +
Sbjct: 201 RN-DAISAQWYRKSATSG------------------DELGQLHLADMYYFGIGVTQDYTQ 241
Query: 229 AFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEI 288
+ + A++GN+ A +++G G ++ KAL W+ K+A++G +L +
Sbjct: 242 SRVLFSQSAEQGNSIAQFRLGYILEQG-LAGAKEPLKALEWYRKSAEQGNSDGQYYLAHL 300
Query: 289 YARGA-GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA 347
Y +GA GV +N +A+ W T +A Q +A +G +Y G E+ + KA E+F KAA
Sbjct: 301 YDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY-FRLGSEE-EHKKAVEWFRKAA 358
Query: 348 DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKN 407
E +NLG +G GVK+D + A + AA G A QL ++++ G+G++++
Sbjct: 359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418
Query: 408 LHMATALYKLVAERG--PWSSLSRWALESYLKG-DVGKAFLLYSRMAELGYEVAQSNAAW 464
A A + + + + +R E L + +A LL + E A +
Sbjct: 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYAPEAWARMQK 478
Query: 465 ILDK 468
+ +
Sbjct: 479 LKAQ 482
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 5e-59
Identities = 86/414 (20%), Positives = 155/414 (37%), Gaps = 80/414 (19%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
AA++G P A+ LG +Y G + +K ++ + AAE G Q M AY +
Sbjct: 105 AALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164
Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
+D + A + Y K+
Sbjct: 165 RD-YVMAREWY------------------------------------SKA---------- 177
Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
A++GN + ++G Y G G+ R+ + W+ K+A G+ L ++Y G
Sbjct: 178 ----AEQGNVWSCNQLGYMYSRG-LGVERNDAISAQWYRKSATSGDELGQLHLADMYYFG 232
Query: 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA 352
GV ++YT++ + +A Q A +GY+ +G K KA E++ K+A+ +
Sbjct: 233 IGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGA-KEPLKALEWYRKSAEQGNS 291
Query: 353 GGHYNLGVMYYKGI-GVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMA 411
G Y L +Y KG GV ++ + A ++ +A G A L ++ +G ++ A
Sbjct: 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYF-RLGSEEEHKKA 350
Query: 412 TALYKLVAERGPWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWI 465
++ A +G +++ L + L+G D +A + + AE G AQ I
Sbjct: 351 VEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEI 408
Query: 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRV 519
G + + Q A + + AS +
Sbjct: 409 Y-----------YYGLGVERDYVQ-AWAWFDTASTNDMNLFGTENRNITEKKLT 450
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 4e-55
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 21/282 (7%)
Query: 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKA 302
++ + L F L L L + A+ GE ++ LG Y +G ++ T+A
Sbjct: 3 KSLLAVMLTGLFALVSLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQA 62
Query: 303 LEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362
++W AA Q A +G Y+ G GV + +Y +A +++KAA NLGVMY
Sbjct: 63 MDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALKGLPQAQQNLGVMY 121
Query: 363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422
++G GVK D + K+F +AA G + + G G+ ++ MA Y AE+G
Sbjct: 122 HEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181
Query: 423 PWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCM 476
+ S L Y +G + + Y + A G E+ Q + A + +G G
Sbjct: 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYY-FGIGV--- 235
Query: 477 GESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
+ + + L+ Q++EQGN A +G G
Sbjct: 236 --------TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL 269
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-39
Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 51/285 (17%)
Query: 116 ESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDM 175
+A +G+ A+ LG++ G+ + KA ++ +AE GN + +A+ Y +
Sbjct: 247 SQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA- 305
Query: 176 HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235
G +N ++A
Sbjct: 306 ----------------------------------EGVAKN----------REQAISWYTK 321
Query: 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295
A++G+A A +G Y+ G + KA+ WF KAA KGE + LG +G GV
Sbjct: 322 SAEQGDATAQANLGAIYF--RLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV 379
Query: 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355
+++ +A W+ AA Q L +A +G +Y G GVE ++Y +A +F+ A+ N+
Sbjct: 380 KKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE-RDYVQAWAWFDTASTNDMNLFG 438
Query: 356 YNLGVMYYK---GIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
+ K +++ L+ +Y A + A+
Sbjct: 439 TENRNITEKKLTAKQLQQAELLSQQYIEKYAPEAWARMQKLKAQS 483
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 6e-32
Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 61/262 (23%)
Query: 116 ESAAMEGDPHARSVLGFLYGMGMM-RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQD 174
+A +G+ + L LY G +N+ +A ++ +AE G+ ++ + Y R
Sbjct: 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342
Query: 175 M---HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQ 231
H KAV+ + RK+
Sbjct: 343 SEEEHKKAVEWF------------------------------------RKA--------- 357
Query: 232 ILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR 291
A KG A + +G G +G+++D +A +W KAA++G + LGEIY
Sbjct: 358 -----AAKGEKAAQFNLGNALLQG-KGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYY 411
Query: 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVE--KKNYTKAKEYFEKAADN 349
G GVER+Y +A W A+ + + K + ++ +++Y EK A
Sbjct: 412 GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYAPE 471
Query: 350 EEAGGHYNLGVMYYKGIGVKRD 371
+ + + +
Sbjct: 472 ----AWARMQKLKAQSAVKTGN 489
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 6e-62
Identities = 64/260 (24%), Positives = 105/260 (40%), Gaps = 10/260 (3%)
Query: 215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274
GA + +A + E + +G+ YY G +G+ ++ KA +++KA
Sbjct: 11 GLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQG-QGVEKNLKKAASFYAKAC 69
Query: 275 DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKK 334
D LG +Y G GV +N KAL++ + A + +G +Y G V +
Sbjct: 70 DLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT-R 128
Query: 335 NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394
++ KA EYF KA D + G LG +Y G G +D+K A + A + +
Sbjct: 129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNA 188
Query: 395 AKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL-ESYLKG-----DVGKAFLLYS 448
M+H G G KN A A Y E + + L G + +A +
Sbjct: 189 GNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFK 246
Query: 449 RMAELGYEVAQSNAAWILDK 468
+ +LG + A + K
Sbjct: 247 KGCKLGAKGACDILKQLKIK 266
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 6e-59
Identities = 68/307 (22%), Positives = 111/307 (36%), Gaps = 62/307 (20%)
Query: 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LRQDM 175
E DP LG +E++ +A Y A + + V Y + ++
Sbjct: 3 EQDPKELVGLGAKSY----KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKN- 57
Query: 176 HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235
KA Y K+
Sbjct: 58 LKKAASFY------------------------------------AKA------------- 68
Query: 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGV 295
+ + +G YY G +G+ ++ KAL ++SKA D + LG IY G V
Sbjct: 69 -CDLNYSNGCHLLGNLYYSG-QGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126
Query: 296 ERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355
R++ KA+E+ T A +G LY G G K + KA ++KA D +++ G
Sbjct: 127 TRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLKDSPGC 185
Query: 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALY 415
+N G MY+ G G ++ K A + A + + L M + G G+ +N A +
Sbjct: 186 FNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENF 245
Query: 416 KLVAERG 422
K + G
Sbjct: 246 KKGCKLG 252
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 6e-54
Identities = 67/294 (22%), Positives = 102/294 (34%), Gaps = 58/294 (19%)
Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168
+A E A + LG LY G E+N KA ++ A + +
Sbjct: 23 TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82
Query: 169 TYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSR 223
Y Q+ +KA++ Y K+
Sbjct: 83 LYYSGQGVSQN-TNKALQYY------------------------------------SKA- 104
Query: 224 GEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSME 283
A +G Y+ G + + RD KA+ +F+KA D +
Sbjct: 105 -------------CDLKYAEGCASLGGIYHDG-KVVTRDFKKAVEYFTKACDLNDGDGCT 150
Query: 284 FLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYF 343
LG +Y G G ++ KAL A + G +Y G G KN+ +A +
Sbjct: 151 ILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT-KNFKEALARY 209
Query: 344 EKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
KA + E GG +NLG M Y G GV R+ K A + F G + A L ++
Sbjct: 210 SKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQL 263
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 4e-53
Identities = 69/280 (24%), Positives = 106/280 (37%), Gaps = 50/280 (17%)
Query: 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERN 298
+ + + +G Y +D T+A +F KA D E LG +Y +G GVE+N
Sbjct: 3 EQDPKELVGLGAKSYKE-----KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKN 57
Query: 299 YTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358
KA + A + + +G LY G GV + N KA +Y+ KA D + A G +L
Sbjct: 58 LKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLKYAEGCASL 116
Query: 359 GVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLV 418
G +Y+ G V RD K A +YF A + L ++ G G K+L
Sbjct: 117 GGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLK--------- 167
Query: 419 AERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGE 478
KA Y + +L NA + +GEG+
Sbjct: 168 -----------------------KALASYDKACDLKDSPGCFNAGNMYH-HGEGA----- 198
Query: 479 SGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
+ + A + + +A E N +G Y G
Sbjct: 199 ------TKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-40
Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 58/253 (22%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
A + +LG LY G +N KA Y+ A + + + Y +
Sbjct: 68 ACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127
Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
+D KAV+ + K+
Sbjct: 128 RD-FKKAVEYF------------------------------------TKA---------- 140
Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
+ +G Y G RG +D KAL + KA D + G +Y G
Sbjct: 141 ----CDLNDGDGCTILGSLYDAG-RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHG 195
Query: 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEA 352
G +N+ +AL + A + +G + G GV +N +A E F+K
Sbjct: 196 EGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT-RNEKQAIENFKKGCKLGAK 254
Query: 353 GGHYNLGVMYYKG 365
G L + K
Sbjct: 255 GACDILKQLKIKV 267
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 37/221 (16%), Positives = 65/221 (29%), Gaps = 57/221 (25%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
A + LG +Y G + R+ KA Y A + + + + Y
Sbjct: 104 ACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP 163
Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
+D KA+ Y K+
Sbjct: 164 KD-LKKALASY------------------------------------DKA---------- 176
Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
++ + G Y+ G G ++ +AL +SKA + LG + G
Sbjct: 177 ----CDLKDSPGCFNAGNMYHHG-EGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231
Query: 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEK 333
GV RN +A+E + A + + L +K +
Sbjct: 232 EGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIKVHHHHH 272
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 57/186 (30%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
A D ++LG LY G ++ KA + A + + Y +
Sbjct: 140 ACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199
Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
++ +A+ Y K+
Sbjct: 200 KNF-KEALARY------------------------------------SKA---------- 212
Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARG 292
+ N G + +G Y G G+ R+ +A+ F K G + + L ++ +
Sbjct: 213 ----CELENGGGCFNLGAMQYNG-EGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIKV 267
Query: 293 AGVERN 298
+
Sbjct: 268 HHHHHH 273
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 2e-51
Identities = 72/374 (19%), Positives = 124/374 (33%), Gaps = 34/374 (9%)
Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168
EA S ++ A G+ + L LY N + A G ++ +A
Sbjct: 91 HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-GYPEAGLAQVL 149
Query: 169 TYLRQDM---HDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL-RKSRG 224
Y Q H V+ + A + + +K +
Sbjct: 150 LYRTQGTYDQHLDDVERICKAALNT------------------TDICYVELATVYQKKQQ 191
Query: 225 EDD--EAFQILEYQAQKGNAGAMYKIGLFYYFGL-RGLRRDRTKALMWFSKAADKGEPQS 281
+ E + +E +G A + G D A K A G P S
Sbjct: 192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPAS 250
Query: 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKE 341
L ++ + + +++L + A +G LY +G V + A+
Sbjct: 251 WVSLAQLLYDF-PELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVP-ADAKAAEA 308
Query: 342 YFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTG 401
+FEKA E A Y LG +Y +G K + A + L AA G A + +A++F G
Sbjct: 309 HFEKAVGREVA-ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQG 367
Query: 402 VGLKKNLHMATALYKLVAERG-PWSSLSRWALESYLKG---DVGKAFLLYSRMAELGYEV 457
G K + A +L + P ++ LE+ L G+ + A
Sbjct: 368 KGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQ 427
Query: 458 AQSNAAWILDKYGE 471
+ + ++ GE
Sbjct: 428 STLQLHALQEEDGE 441
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 9e-45
Identities = 53/357 (14%), Positives = 98/357 (27%), Gaps = 42/357 (11%)
Query: 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG--E 225
R D A + Y +LAE ++ A+ ++
Sbjct: 12 EALKRGD-TVTAQQNYQQLAE------------------LGYSEAQVGLADIQVGTRDPA 52
Query: 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL 285
+ + A + A ++G + +A KA GE ++ L
Sbjct: 53 QIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPL 112
Query: 286 GEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEK 345
+Y + N + + A LY + G + E K
Sbjct: 113 AMLYLQYPHSFPNVNAQQQI-SQWQAAGYPEAGLAQVLLY-RTQGTY-DQHLDDVERICK 169
Query: 346 AADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFH--TGVG 403
AA N + L +Y K ++ + K + G A +
Sbjct: 170 AALNTTDICYVELATVYQKKQQPEQQAE-LLKQMEAGVSRGTVTAQRVDSVARVLGDATL 228
Query: 404 LKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSN 461
+ A AL + +A P W SL++ + GDV + A+
Sbjct: 229 GTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELL 288
Query: 462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
+ G+ + A + + +A + A +G Y G
Sbjct: 289 LGKLYY-EGKWV-----------PADAKAAEAHFEKAVGREVA-ADYYLGQIYRRGY 332
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 2e-44
Identities = 66/424 (15%), Positives = 107/424 (25%), Gaps = 75/424 (17%)
Query: 102 NGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGM-MRERNKGKAFLYHHFAAEGGNI 160
+ AA + P A++ LG L E +A A G
Sbjct: 47 GTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG 106
Query: 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220
+ + +A YL+
Sbjct: 107 NTLIPLAMLYLQYPHSFP------------------------------------------ 124
Query: 221 KSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQ 280
+ A Q + G A L Y +G + KAA
Sbjct: 125 -----NVNAQQQISQWQAAGYPEAGLAQVLLYR--TQGTYDQHLDDVERICKAALNTTDI 177
Query: 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVE-KKNYTKA 339
L +Y + E + L+ + + +A V G + A
Sbjct: 178 CYVELATVYQKKQQPE-QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236
Query: 340 KEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFH 399
+ EK A +L + Y DV+ KY A +A L K+++
Sbjct: 237 QALLEKIAPG-YPASWVSLAQLLY-DFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294
Query: 400 TGVGLKKNLHMATALYKLVAERGPWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAEL 453
G + + A A ++ R + + L + Y +G KA A
Sbjct: 295 EGKWVPADAKAAEAHFEKAVGREVA---ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351
Query: 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDA 513
G A A + + +G G D A+ A Q A L
Sbjct: 352 GQNSADFAIAQL---FSQG------KGTKPDPLN---AYVFSQLAKAQDTPEANDLATQL 399
Query: 514 YYYG 517
Sbjct: 400 EAPL 403
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 5e-42
Identities = 57/419 (13%), Positives = 101/419 (24%), Gaps = 79/419 (18%)
Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168
A + A G A+ L + R+ + K + AA + +++ +
Sbjct: 20 VTAQQNYQQLAELGYSEAQVGLADIQVGT--RDPAQIKQAEATYRAAADTSPRAQARLGR 77
Query: 169 TYLR-----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL-RKS 222
+ H +A L + L +
Sbjct: 78 LLAAKPGATEAEHHEAESLLKKAFANG------------------EGNTLIPLAMLYLQY 119
Query: 223 RG--EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQ 280
+ A Q + G A L Y +G + KAA
Sbjct: 120 PHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYR--TQGTYDQHLDDVERICKAALNTTDI 177
Query: 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVE-KKNYTKA 339
L +Y + E + L+ + + +A V G + A
Sbjct: 178 CYVELATVYQKKQQPE-QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236
Query: 340 KEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFH 399
+ EK A +L + Y DV+ KY A +A L K+++
Sbjct: 237 QALLEKIAPGY-PASWVSLAQLLY-DFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294
Query: 400 TGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQ 459
G + + A A ++ R A ++ GY
Sbjct: 295 EGKWVPADAKAAEAHFEKAVGREV------------------AADYYLGQIYRRGYLGKV 336
Query: 460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGR 518
A A+ G A I + G+
Sbjct: 337 YPQK---------------------------ALDHLLTAARNGQNSADFAIAQLFSQGK 368
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 8e-41
Identities = 54/306 (17%), Positives = 94/306 (30%), Gaps = 32/306 (10%)
Query: 101 TNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI 160
T G + + AA+ L +Y E+ + G +
Sbjct: 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQA-ELLKQMEAGVSRGTV 211
Query: 161 --QSKMAVAYTY----LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE 214
Q +VA L A L ++A + +
Sbjct: 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPG-------------------YPASWV 252
Query: 215 NKGALRKSRGE---DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFS 271
+ L E ++ + L+ A +G YY G + + D A F
Sbjct: 253 SLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEG-KWVPADAKAAEAHFE 311
Query: 272 KAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGV 331
KA + + +LG+IY RG + KAL+ L AAR SA I L+ +G G
Sbjct: 312 KAVGRE-VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370
Query: 332 EKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAF 391
+ + A + + A + + + +R +AA ++
Sbjct: 371 KP-DPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQST 429
Query: 392 YQLAKM 397
QL +
Sbjct: 430 LQLHAL 435
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 2e-35
Identities = 37/266 (13%), Positives = 68/266 (25%), Gaps = 20/266 (7%)
Query: 260 RRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN 319
R D A + + A+ G ++ L +I G +A AA +
Sbjct: 16 RGDTVTAQQNYQQLAELGYSEAQVGLADIQV-GTRDPAQIKQAEATYRAAADTSPRAQAR 74
Query: 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379
+G L G + + +A+ +KA N E L ++Y + +V +
Sbjct: 75 -LGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQIS 133
Query: 380 LVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG- 438
AG+ +A + + G A A Y K
Sbjct: 134 Q-WQAAGYPEAGLAQV-LLYRTQGTYDQHLDDVERICKAALNTTDICYVELAT-VYQKKQ 190
Query: 439 ---DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLW 495
+ G AQ + G+ T +
Sbjct: 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARV-LGDA----------TLGTPDEKTAQAL 239
Query: 496 WQASEQGNEHAALLIGDAYYYGRVRH 521
+ G + + + Y
Sbjct: 240 LEKIAPGYPASWVSLAQLLYDFPELG 265
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 5e-26
Identities = 34/241 (14%), Positives = 62/241 (25%), Gaps = 20/241 (8%)
Query: 282 MEFLGEIY-ARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAK 340
M L + A A + A + A A G+ + V +A+
Sbjct: 1 MAGLPDQRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRD--PAQIKQAE 58
Query: 341 EYFEKAADNEEAGGHYNLGVMYYKGIG-VKRDVKLACKYFLVAANAGHQKAFYQLAKMFH 399
+ AAD LG + G + + A A G LA ++
Sbjct: 59 ATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYL 117
Query: 400 TGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG--DVGKAFLLYSRMAELGYEV 457
N++ + + A P + L++ L + A ++
Sbjct: 118 QYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI 177
Query: 458 AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYG 517
A + K + E+ +G A + A G
Sbjct: 178 CYVELATVYQK-KQQ------------PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG 224
Query: 518 R 518
Sbjct: 225 D 225
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 30/206 (14%), Positives = 71/206 (34%), Gaps = 23/206 (11%)
Query: 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379
G+ + +++ + A++ +++ A+ + L + G +K A +
Sbjct: 3 GLPDQRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQV-GTRDPAQIKQAEATY 61
Query: 380 LVAANAGHQKAFYQLAKMFHTGVG-LKKNLHMATALYKLVAERGPWSSLSRWALESYLKG 438
AA +A +L ++ G + H A +L K G ++L A+ YL+
Sbjct: 62 R-AAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAM-LYLQY 119
Query: 439 -----DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHS 493
+V + + GY ++ A +L +G ++H
Sbjct: 120 PHSFPNVNAQQQIS-QWQAAGY--PEAGLAQVLLYRTQG-----------TYDQHLDDVE 165
Query: 494 LWWQASEQGNEHAALLIGDAYYYGRV 519
+A+ + + + Y +
Sbjct: 166 RICKAALNTTDICYVELATVYQKKQQ 191
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 4e-51
Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 14/204 (6%)
Query: 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL 285
E + QA+ G+ A Y + + D KA W KAA +G+ ++ L
Sbjct: 2 ATEPGSQYQQQAEAGDRRAQYYLADTWVSS-----GDYQKAEYWAQKAAAQGDGDALALL 56
Query: 286 GEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEK 345
++ R + +Y +A + A S + + V + A +
Sbjct: 57 AQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA-TDVAHAITLLQD 114
Query: 346 AADNEEAGGH----YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ-KAFYQLAKMFHT 400
AA + E+ LG++Y G+ D A +YF +++ A Y MF
Sbjct: 115 AARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174
Query: 401 GVGL--KKNLHMATALYKLVAERG 422
G + N A + G
Sbjct: 175 GEKGFIEPNKQKALHWLNVSCLEG 198
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-44
Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 11/183 (6%)
Query: 223 RGEDD-EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQS 281
D +A + A +G+ A+ + + D +A KA + G
Sbjct: 30 SSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRN--PQQADYPQARQLAEKAVEAGSKSG 87
Query: 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQ----QLYSAYNGIGYLYVKGYGVEKKNYT 337
L + + A+ L AAR A +G +Y G ++
Sbjct: 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP-EDDV 146
Query: 338 KAKEYFEKAADN-EEAGGHYNLGVMYYKGIG--VKRDVKLACKYFLVAANAGHQKAFYQL 394
KA EYF+ ++ Y G+M+ +G ++ + + A + V+ G +
Sbjct: 147 KASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEF 206
Query: 395 AKM 397
++
Sbjct: 207 DRI 209
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 2e-41
Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 17/209 (8%)
Query: 264 TKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGY 323
T+ + + A+ G+ ++ +L + + +Y KA W AA Q A +
Sbjct: 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQ 58
Query: 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383
L ++ + +Y +A++ EKA + G L + DV A AA
Sbjct: 59 LKIRNPQ--QADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116
Query: 384 NAGHQK----AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG- 438
A L ++ +GV ++ A+ +K + WA + +G
Sbjct: 117 RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGE 176
Query: 439 ------DVGKAFLLYSRMAELGYEVAQSN 461
+ KA + G++
Sbjct: 177 KGFIEPNKQKALHWLNVSCLEGFDTGCEE 205
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 9e-35
Identities = 40/265 (15%), Positives = 71/265 (26%), Gaps = 66/265 (24%)
Query: 109 EEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168
E S+ + A GD A+ L + + KA + AA G+ + +A
Sbjct: 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQ 58
Query: 169 TYLR----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG 224
+R D + +A +L K+
Sbjct: 59 LKIRNPQQAD-YPQARQLA------------------------------------EKA-- 79
Query: 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEF 284
+ G+ + + D A+ AA E +
Sbjct: 80 ------------VEAGSKSGEIVLARVLVNR-QAGATDVAHAITLLQDAARDSESDAAVD 126
Query: 285 ----LGEIYARGAGVERNYTKALEWLTHAARQQLYS-AYNGIGYLYVKGYGVE-KKNYTK 338
LG IYA G + KA E+ ++ A G ++ +G + N K
Sbjct: 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQK 186
Query: 339 AKEYFEKAADNEEAGGHYNLGVMYY 363
A + + G +
Sbjct: 187 ALHWLNVSCLEGFDTGCEEFDRISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 7e-18
Identities = 35/230 (15%), Positives = 67/230 (29%), Gaps = 65/230 (28%)
Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMA 165
++A + AA +GD A ++L L ++ + +A A E G+ + +A
Sbjct: 34 YQKAEYWAQKAAAQGDGDALALLAQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLA 92
Query: 166 VAYTY---LRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222
D A+ L + +
Sbjct: 93 RVLVNRQAGATD-VAHAITLL------------------------------------QDA 115
Query: 223 RGEDDEAFQILEYQAQKGNA----GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE 278
A+ + A +GL Y G D KA +F ++
Sbjct: 116 --------------ARDSESDAAVDAQMLLGLIYASG-VHGPEDDVKASEYFKGSSSLSR 160
Query: 279 -PQSMEFLGEIYARGAG--VERNYTKALEWLTHAARQQLYSAYNGIGYLY 325
+ + G ++ +G +E N KAL WL + + + +
Sbjct: 161 TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRIS 210
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 4e-13
Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 53/186 (28%)
Query: 337 TKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396
T+ +++ A+ + Y L + D + A + AA G A LA+
Sbjct: 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQ 58
Query: 397 MFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYE 456
+ D +A L + E G +
Sbjct: 59 LKIRNPQQA---------------------------------DYPQARQLAEKAVEAGSK 85
Query: 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNE----HAALLIGD 512
+ A +L + A A +L A+ A +L+G
Sbjct: 86 SGEIVLARVLV-NRQA-----------GATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133
Query: 513 AYYYGR 518
Y G
Sbjct: 134 IYASGV 139
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-39
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS 316
+++D KA+ ++ KA + E L + N K ++L+ A +
Sbjct: 5 GTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSGN 58
Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLAC 376
+G Y G V+K + KA +Y+ KA + G LG Y G GV ++ K A
Sbjct: 59 GCRFLGDFYENGKYVKK-DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 377 KYFLVAANAGHQKAFYQL 394
K F A G + A L
Sbjct: 118 KTFEKACRLGSEDACGIL 135
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 4e-33
Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE 351
G V+++ KA+++ A + + N K +Y KA +
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNS-------QINKQKLFQYLSKACELNS 56
Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMA 411
G LG Y G VK+D++ A +Y+ A Q L + G G+ KN A
Sbjct: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
Query: 412 TALYKLVAERG 422
++ G
Sbjct: 117 VKTFEKACRLG 127
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-32
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 8/134 (5%)
Query: 226 DDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL 285
+A Q + + + ++ K + SKA + FL
Sbjct: 11 LKKAIQYYVKACELNEMFGCLSLV-------SNSQINKQKLFQYLSKACELNSGNGCRFL 63
Query: 286 GEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEK 345
G+ Y G V+++ KA ++ + A +GY G GV KN +A + FEK
Sbjct: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVV-KNEKQAVKTFEK 122
Query: 346 AADNEEAGGHYNLG 359
A L
Sbjct: 123 ACRLGSEDACGILN 136
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 8e-12
Identities = 24/174 (13%), Positives = 43/174 (24%), Gaps = 63/174 (36%)
Query: 118 AAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNI--QSKMAVAYTY---LR 172
A + + + NK K F Y A E + + Y ++
Sbjct: 21 ACELNEMFG------CLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVK 74
Query: 173 QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQI 232
+D KA + Y K+
Sbjct: 75 KD-LRKAAQYY------------------------------------SKA---------- 87
Query: 233 LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLG 286
+ +G Y G +G+ ++ +A+ F KA G + L
Sbjct: 88 ----CGLNDQDGCLILGYKQYAG-KGVVKNEKQAVKTFEKACRLGSEDACGILN 136
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-10
Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 26/156 (16%)
Query: 363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422
G VK+D+K A +Y++ A L + N E
Sbjct: 2 VGGGTVKKDLKKAIQYYVKACELNEMFGCLSL------VSNSQINKQKLFQYLSKACELN 55
Query: 423 PWSSLSRWAL-ESYLKG-----DVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCM 476
S L + Y G D+ KA YS+ L + + G
Sbjct: 56 --SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYK---QYAG---- 106
Query: 477 GESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGD 512
G + ++ A + +A G+E A ++ +
Sbjct: 107 --KGVVKNEKQ---AVKTFEKACRLGSEDACGILNN 137
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 4e-10
Identities = 56/355 (15%), Positives = 104/355 (29%), Gaps = 95/355 (26%)
Query: 32 VLSQDDIKDSAASTDDESAAD---W--DDFGDS--ESMTEENLDPG-SW--SPVFEPSID 81
+LS+++I S D S W + + EE L + SP+
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 82 PGAINGSYYITISKMMSAVTNGDVRVM-------EEATSEVESAAMEGDPHARSVLGFLY 134
P + Y ++ D +V + ++ A +E P ++
Sbjct: 105 PSMMTRMYIEQRDRL-----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---D 156
Query: 135 GM-GMMRERNKGKAFLYHHFAAEGGN---IQSKMA--VAYTYLRQDMHDKAV-----KLY 183
G+ G GK ++ A + +Q KM + + L+ + V KL
Sbjct: 157 GVLGS------GKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE------DD-------EAF 230
++ ++ D +RIH+ E + L+ E + AF
Sbjct: 207 YQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 231 ----QILEYQAQKGNA---GAMYKIGLFYYFGLRGLRRDRTKALMWFSKA---------- 273
+IL K A + L D K+L K
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPR 320
Query: 274 -ADKGEPQSMEFLGEIYARGAGVERNYTK------------ALEWLTHAARQQLY 315
P+ + + E G N+ +L L A ++++
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 48/382 (12%), Positives = 108/382 (28%), Gaps = 113/382 (29%)
Query: 3 ELTSTPKLIICLLILSLYPISLKARPFILVLSQDDIKDSAA------------STDDESA 50
L + CLL+L +++++ A +T +
Sbjct: 236 RLLKSKPYENCLLVL------------------LNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 51 ADWDDFGDSESMTEENLDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEE 110
DF + + T +LD S + P K + + ++
Sbjct: 278 T---DFLSAATTTHISLDHHSMT--LTPD-------------EVKSLLL------KYLDC 313
Query: 111 ATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTY 170
++ + +P S++ G+ N + H + + + + +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDN------WKHVNCD--KLTTIIESSLNV 365
Query: 171 LRQDMHDKAVKLYAELAEIAVNSFLIS--------KDSPVIEPIRIHNGAEENKGALRKS 222
L + K++ L+ + S I D + + + N + K
Sbjct: 366 LEPAEYR---KMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQ 420
Query: 223 RGEDDEAFQI----LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALM----WFS--- 271
+ I LE + + N A+++ + +Y + D ++S
Sbjct: 421 P--KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 272 ---KAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLY--- 325
K + E M ++ +L R +A+N G +
Sbjct: 479 HHLKNIEHPE--RMTLFRMVFLD-----------FRFLEQKIRHD-STAWNASGSILNTL 524
Query: 326 --VKGYGVEKKNYTKAKEYFEK 345
+K Y K +E+
Sbjct: 525 QQLKFY---KPYICDNDPKYER 543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 7e-08
Identities = 30/205 (14%), Positives = 56/205 (27%), Gaps = 24/205 (11%)
Query: 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226
+ + +AV + + + ++ + + V + I + K
Sbjct: 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70
Query: 227 DEAFQILEY--QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA--ADKGEPQSM 282
D+A+ + Q N + R AL + K + +
Sbjct: 71 DKAYLFYKELLQKAPNNVDCLEACAEMQV-----CRGQEKDALRMYEKILQLEADNLAAN 125
Query: 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAK 340
FLG Y A K LE ++ A G + Y KA+
Sbjct: 126 IFLGNYYYLTAE---QEKKKLETDYKKLSSPTKMQYARYRDGLSKLF-----TTRYEKAR 177
Query: 341 EYFEKAAD---NEEAGGHYNLGVMY 362
+K + EA L +
Sbjct: 178 NSLQKVILRFPSTEA--QKTLDKIL 200
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 31/168 (18%)
Query: 215 NKGALRKSRGEDDEAFQILE--YQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272
G+ ++G A Q +E + + Y++G YY+ ++ KA F K
Sbjct: 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-----NKEYVKADSSFVK 167
Query: 273 AADKGEPQSME---FLGEIYARGAGVER------NYTKALEWLTHAARQ---QLYSAYNG 320
+ +P + A + Y K +E + +L A
Sbjct: 168 VLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226
Query: 321 IGYLYVKGYGVEKKNYTKAKEYFEKAA----DNEEAGGHYNLGVMYYK 364
I Y Y ++ KA ++ N++A L +
Sbjct: 227 IAYYYT-----INRDKVKADAAWKNILALDPTNKKA--IDGLKMKLEH 267
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 31/158 (19%)
Query: 228 EAFQILEY-QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLG 286
EA + L + A +K+ YY + ++ +A D + + +
Sbjct: 126 EAEKELPFVSDDIEKAEFHFKVAEAYYH-----MKQTHVSMYHILQALDIYQNHPLYSIR 180
Query: 287 EIYARG--AGV---ERNYTKALEWLTHA--------ARQQLYSAYNGIGYLYVKGYGVEK 333
I + AG ++Y KAL L A + + + I Y +
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-----S 235
Query: 334 KNYTKAKEYFEKAADNEEAGGH-------YNLGVMYYK 364
+ A E+F+KAA + L K
Sbjct: 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 44/328 (13%), Positives = 95/328 (28%), Gaps = 59/328 (17%)
Query: 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNK 144
+ + + + + T G+ + E +E+ + + F GM ++
Sbjct: 58 MCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEY 117
Query: 145 GKAFLYHHFA----------AEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSF 194
+A Y+ A E K+A AY +++Q ++ + +I N
Sbjct: 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ--THVSMYHILQALDIYQNHP 175
Query: 195 LISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE--------YQAQKGNAGAMY 246
L S + I+ D+A LE Q + A ++
Sbjct: 176 LYSIRT-----IQSLF----VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226
Query: 247 KIGLFYYFGLRGLRRDRTKALMWFSKA-------ADKGEPQSMEFLGEIYARGAGVERNY 299
I Y D A+ F KA P+ + L +
Sbjct: 227 NIANSYD-----RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQT 277
Query: 300 TKALEWLTHAAR-------QQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE- 351
KA +++ + + + +Y + +++ YFEK +
Sbjct: 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV--DERKIHDLLSYFEKKNLHAYI 335
Query: 352 AGGHYNLGVMYYKGIGVKRDVKLACKYF 379
+ ++ + A ++
Sbjct: 336 EACARSAAAVFES----SCHFEQAAAFY 359
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 27/219 (12%), Positives = 60/219 (27%), Gaps = 36/219 (16%)
Query: 143 NKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202
+ +H IQS +A Y +DKA+ E+A++ ++
Sbjct: 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----QNDRF 220
Query: 203 IEPIRIHNGAEENKGALRKSRGEDDEAF-------QILEYQAQKGNAGAMYKIGLFYYFG 255
I N G+D A ++ + ++ +
Sbjct: 221 I--AISLL----NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK- 273
Query: 256 LRGLRRDRTKALMWFSKA-------ADKGEPQSMEFLGEIYARGAGVERNYTKALEWL-T 307
KA + + + K + FL +Y + ER L +
Sbjct: 274 ----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY-KETVDERKIHDLLSYFEK 328
Query: 308 HAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA 346
+ + ++ ++ +A ++ K
Sbjct: 329 KNLHAYIEACARSAAAVFES-----SCHFEQAAAFYRKV 362
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 35/200 (17%), Positives = 57/200 (28%), Gaps = 45/200 (22%)
Query: 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKA------ADKGEPQSMEFLGEIYAR 291
+ + + G D + +F A K LG Y
Sbjct: 5 MEASCLELALEGERLCK-----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 59
Query: 292 GAGVERNYTKALEWLTHA--ARQQLY------SAYNGIGYLYVKGYGVEKKNYTKAKEYF 343
+Y KALE+ H + + A +G N+ +A
Sbjct: 60 ----LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-----VLGNFDEAIVCC 110
Query: 344 EKAAD-NEEAGGH-------YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLA 395
++ D + E YNLG +Y+ K V + Q A
Sbjct: 111 QRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAA 166
Query: 396 KMFHTGVGLKKNLHMATALY 415
F+ ++NL + TAL
Sbjct: 167 VDFY-----EENLSLVTALG 181
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 35/199 (17%), Positives = 56/199 (28%), Gaps = 47/199 (23%)
Query: 240 GNAGAM--YKIGLFYYFGLRGLRRDRTKALMWFSKA------ADKGEPQSMEFLGEIYAR 291
G+A + G D + +F A K LG Y
Sbjct: 1 GSASCLELALEGERLCK-----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 55
Query: 292 GAGVERNYTKALEWLTHA--ARQQLY------SAYNGIGYLYVKGYGVEKKNYTKAKEYF 343
+Y KALE+ H + + A +G N+ +A
Sbjct: 56 ----LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-----VLGNFDEAIVCC 106
Query: 344 EKAAD-NEEAGGH-------YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLA 395
++ D + E YNLG +Y+ K + Q A
Sbjct: 107 QRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNALQAA 162
Query: 396 KMFHTGVGLKKNLHMATAL 414
+ ++NL + TAL
Sbjct: 163 VDLY-----EENLSLVTAL 176
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 30/208 (14%), Positives = 64/208 (30%), Gaps = 16/208 (7%)
Query: 167 AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226
AY + ++ A++ + E+ + + + + G L +
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFG---LRGLRRDRTKALMWFSKAADKGEPQSME 283
D+ + E + + + L G L+ +A + F KA +K +P++ E
Sbjct: 118 DKVKHVCE---KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-KPKNPE 173
Query: 284 F---LGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTK 338
F L R A++ L A R + K E + +
Sbjct: 174 FTSGLAIASYRLDNWPP-SQNAIDPLRQAIRLNPDNQYLKVLLALKLHK-MREEGEEEGE 231
Query: 339 AKEYFEKA--ADNEEAGGHYNLGVMYYK 364
++ E+A + Y +
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRR 259
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 42/245 (17%), Positives = 79/245 (32%), Gaps = 50/245 (20%)
Query: 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRI----HNGAEENKGALRKSR 223
Y Y+R+ A L E+ + + +D + + HN E L K R
Sbjct: 20 YMYIRRFSIPDAEYLRREIKQELDQ---MEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMR 76
Query: 224 GEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGL----RRDRTKALMWFSKAAD---- 275
E+ L + + +Y+ RG+ +R+ A+ +F KA
Sbjct: 77 IEEQPRLSDL-LLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF 135
Query: 276 -KGEPQSMEF---LGEIYARGAGVERNYTKALEWLTHA---------ARQQLYSAYNGIG 322
K + EF + E Y + ++++ A +L ++
Sbjct: 136 VKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191
Query: 323 YLYVKGYGVEKKNYTKAKEYFEKA--------ADNEEAGGHYNLGVMYYKGIGVKRDVKL 374
+ ++ K Y A +F+KA YN+G+ + +
Sbjct: 192 TNF-----LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYED 242
Query: 375 ACKYF 379
A YF
Sbjct: 243 AIPYF 247
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 44/178 (24%)
Query: 228 EAFQILEYQA-QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD---------KG 277
+A L + + A +K+ YY + ++ + +A +
Sbjct: 128 KAESKLIFVKDRIEKAEFFFKMSESYY-----YMKQTYFSMDYARQAYEIYKEHEAYNIR 182
Query: 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHA--------ARQQLYSAYNGIGYLYVKGY 329
Q + + Y A+ A Q + IG
Sbjct: 183 LLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--- 235
Query: 330 GVEKKNYTKAKEYFEKAAD-NEEAGGH-------YNLGVMYYKGIGVKRDVKLACKYF 379
+ Y A YF++A EE+ + + ++YK + A +Y
Sbjct: 236 --SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYH 287
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 19/184 (10%), Positives = 49/184 (26%), Gaps = 49/184 (26%)
Query: 215 NKGALRKSRGEDDEAFQILEYQA---------QKGNAGAMYKIGLFYYFGLRGLRRDRTK 265
G + DEA + A++++G+ +
Sbjct: 31 MLGYVYAFMDRFDEARASFQ-ALQQQAQKSGDHTAEHRALHQVGMVERM-----AGNWDA 84
Query: 266 ALMWFSKAAD---------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHA------- 309
A F + + + + + + A + +
Sbjct: 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQA 140
Query: 310 -ARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD--------NEEAGGHYNLGV 360
+ + A+ G+G L ++KN +A++++ +A D L
Sbjct: 141 DDQVAIACAFRGLGDLAQ-----QEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNG 195
Query: 361 MYYK 364
+ +
Sbjct: 196 LEHH 199
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 100.0 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 100.0 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.85 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.85 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.85 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.85 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.85 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.84 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.84 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.84 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.83 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.83 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.83 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.83 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.82 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.79 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.78 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.76 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.75 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.74 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.73 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.71 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.7 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.7 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.69 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.69 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.67 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.65 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.64 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.63 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.61 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.58 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.57 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.57 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.57 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.56 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.54 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.54 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.53 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.52 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.51 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.5 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.49 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.47 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.41 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.38 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.37 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.36 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.36 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.35 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.32 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.31 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.31 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.3 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.28 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.26 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.25 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.25 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.25 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.22 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.22 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.21 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.21 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.19 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.18 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.18 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.16 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.14 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.13 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.12 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.11 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.11 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.1 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.1 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.09 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.08 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.05 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.05 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.04 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.03 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.03 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.0 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.0 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.0 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.99 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.99 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.98 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.98 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.96 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.95 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.95 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.94 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.93 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.91 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.91 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.91 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.91 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.89 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.89 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.88 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.88 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.88 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.85 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.84 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.84 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.83 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.82 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.8 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.79 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.78 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.75 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.74 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.74 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.72 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.72 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.64 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.63 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.62 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.44 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.41 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.36 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.36 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.33 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.31 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.3 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.28 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.1 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.96 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.85 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.85 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.79 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.66 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.66 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.62 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.53 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.48 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.41 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.94 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.85 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.78 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.92 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.46 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.01 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.83 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.79 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.29 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.29 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 90.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.13 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.09 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 86.44 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.38 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.65 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 80.67 |
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=394.41 Aligned_cols=384 Identities=25% Similarity=0.355 Sum_probs=249.1
Q ss_pred CccccCCCCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHH
Q 009801 73 SPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHH 152 (525)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~ 152 (525)
...++++++.+++++++.+|..+.. ..+..+++++|+.+|+++++.+++.+++.||.+|..|.|+++|+++|++||+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~---g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQ---GNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHc---CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4456667788999999999998876 3455788999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHH
Q 009801 153 FAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDE 228 (525)
Q Consensus 153 ~a~~~~~~~a~~~la~~y~~----~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (525)
++++.+++.+++.||.+|.. .+++++|+.+|+++++
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------------------------------------- 143 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE---------------------------------------- 143 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------------------------------------
Confidence 99999999999999999988 6777777777777643
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 229 AFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 229 A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
.+++.+++.||.+|..+ .++++|+++|+.||+++++.+++.+++.||.+|..|.++.+++++|+.+|++
T Consensus 144 ----------~~~~~a~~~Lg~~y~~g-~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 144 ----------QGRDSGQQSMGDAYFEG-DGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp ----------TTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 44555555555555554 2445555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCH
Q 009801 309 AARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQ 388 (525)
Q Consensus 309 a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 388 (525)
+++.+++.+++.+|.+|..|.++.. ++++|+.+|+++++.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++
T Consensus 213 a~~~~~~~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 213 SATSGDELGQLHLADMYYFGIGVTQ-DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555544433 555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTG-VGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG---DVGKAFLLYSRMAELGYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g-~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~a~~~la~ 464 (525)
.+++.||.+|..+ .++.+++++|+.||+++++.+++.+++++|.++...| ++++|+.+|+++++.+++.+++++|.
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 371 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGN 371 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555554 4444555555555555555555555555555555544 55555555555555555555555555
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHcccccCCC
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYYYGRVRHSE 523 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~ 523 (525)
+|.. |.. ..+++++|+.||++|++.++++++++||.+|+.|.||.+|
T Consensus 372 ~y~~-----------g~g-~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 372 ALLQ-----------GKG-VKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HHHH-----------TSS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHc-----------CCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 5543 000 1335555555555555555555555555555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=366.39 Aligned_cols=352 Identities=27% Similarity=0.425 Sum_probs=329.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc----cccHHHHHHH
Q 009801 107 VMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----QDMHDKAVKL 182 (525)
Q Consensus 107 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~----~~~~~~A~~~ 182 (525)
....++..++++++.+++++++.||.+|..|.++.+|+++|+.+|+++++.+++.+++.||.+|.. .+++++|+.+
T Consensus 22 ~~~~~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 22 LGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp ---CCHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 345568889999999999999999999999999999999999999999999999999999999988 6777776666
Q ss_pred HHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccC
Q 009801 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRD 262 (525)
Q Consensus 183 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~ 262 (525)
|+++ ++.+++.+++.||.+|..+ .++++|
T Consensus 102 ~~~a--------------------------------------------------~~~~~~~a~~~Lg~~y~~g-~g~~~~ 130 (490)
T 2xm6_A 102 YKKA--------------------------------------------------ALKGLPQAQQNLGVMYHEG-NGVKVD 130 (490)
T ss_dssp HHHH--------------------------------------------------HHTTCHHHHHHHHHHHHHT-SSSCCC
T ss_pred HHHH--------------------------------------------------HHCCCHHHHHHHHHHHHcC-CCCCCC
Confidence 6654 5668899999999999987 478899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 263 RTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 263 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
+++|+.||+++++.+++.+++.||.+|..|.++.+|+++|+.+|+++++.+++.+++.||.+|..|.++.. ++++|+.+
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~ 209 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER-NDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCc-CHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888766 99999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 343 FEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 343 ~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
|+++++.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.||+++++.+
T Consensus 210 ~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 210 YRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHH
Q 009801 423 PWSSLSRWALESYLK-----GDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ 497 (525)
Q Consensus 423 ~~~a~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 497 (525)
++.+++.+|.++... +++++|+.+|+++++.+++.+++++|.+|...| ..+++++|+.||++
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g-------------~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG-------------SEEEHKKAVEWFRK 356 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CcccHHHHHHHHHH
Confidence 999999999999988 899999999999999999999999999998721 26799999999999
Q ss_pred HHhCCCHHHHHHHHHHHHcccccCCC
Q 009801 498 ASEQGNEHAALLIGDAYYYGRVRHSE 523 (525)
Q Consensus 498 a~~~~~~~a~~~lg~~y~~g~g~~~~ 523 (525)
|++.+++++++.||.+|+.|.||.+|
T Consensus 357 a~~~~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 357 AAAKGEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999875
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=332.99 Aligned_cols=381 Identities=14% Similarity=-0.001 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009801 89 YYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAY 168 (525)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~ 168 (525)
..+|..++. .+++++|+.+|+++++++++++++.||.+|.. .|...|.++|+.||++|++. ++.+++.||.
T Consensus 7 ~~la~~~~~-------~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~-~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~ 77 (452)
T 3e4b_A 7 QRLANEALK-------RGDTVTAQQNYQQLAELGYSEAQVGLADIQVG-TRDPAQIKQAEATYRAAADT-SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHTCCTGGGTCC------------------------------CHHHHHH
T ss_pred HHHHHHHHh-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 456777776 88999999999999999999999999999965 55556669999999999988 8999999999
Q ss_pred HHhcc-----ccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCC---cHHHHHHHHHHHHcC
Q 009801 169 TYLRQ-----DMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGE---DDEAFQILEYQAQKG 240 (525)
Q Consensus 169 ~y~~~-----~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~ 240 (525)
++... +++++|+.+|+++++.+.. ....+++.++...+. -.+++++++++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~------------------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG------------------NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS------------------SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH------------------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 55443 4889999999998874322 234456666554332 256788888888889
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHH--
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAY-- 318 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~-- 318 (525)
++.+++.||.+|..++ +..++.++|..+++.+ ..+++.+++.||.+|.. .|+..++++|+.+|+++++.++..+.
T Consensus 140 ~~~a~~~Lg~~y~~~~-~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQG-TYDQHLDDVERICKAA-LNTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHT-CGGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CcccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999884 6667777766655544 45667799999999998 33333999999999999999876666
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMF 398 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y 398 (525)
++||.+|..|.++.+ ++++|+.+|++++ .+++.++++||.+|..+.+ .+++++|+.+|+++++.+++.++++||.+|
T Consensus 217 ~~Lg~~y~~g~~~~~-d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 217 DSVARVLGDATLGTP-DEKTAQALLEKIA-PGYPASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLY 293 (452)
T ss_dssp HHHHHHHTCGGGSSC-CHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCC-CHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999988777665 9999999999999 8999999999999664444 889999999999999999999999999999
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCcc
Q 009801 399 HTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL----KGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSM 474 (525)
Q Consensus 399 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~ 474 (525)
..|.|+.+|+++|+.||++|+ .+++.++++||.+|.. ..|+++|+.||++|++.|++.++++||.+|..
T Consensus 294 ~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~------ 366 (452)
T 3e4b_A 294 YEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQ------ 366 (452)
T ss_dssp HHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHS------
T ss_pred HcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHh------
Confidence 999999999999999999999 8889999999987766 34999999999999999999999999999875
Q ss_pred ccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009801 475 CMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYY 515 (525)
Q Consensus 475 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 515 (525)
|... ..|+.+|+.||++|++.|++++...|+.+..
T Consensus 367 -----G~g~-~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 367 -----GKGT-KPDPLNAYVFSQLAKAQDTPEANDLATQLEA 401 (452)
T ss_dssp -----CTTB-CCCHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred -----CCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2221 4678899999999999999999998888754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=340.74 Aligned_cols=390 Identities=15% Similarity=0.087 Sum_probs=307.6
Q ss_pred CCCCCCCccccCCCCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHH-hhhcCCCccCCHH
Q 009801 67 LDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGF-LYGMGMMRERNKG 145 (525)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~-~y~~g~g~~~d~~ 145 (525)
+++..|+.+|+++++++++++++.+|.++.. .+...|+++|+.+|+++++. ++.+++.||. ++..|.++++|++
T Consensus 17 g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~----~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGYSEAQVGLADIQVG----TRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc----cCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 5667888888888888999999999998864 34455669999999998887 9999999999 5666556668999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhccccHH---HHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhc
Q 009801 146 KAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHD---KAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKS 222 (525)
Q Consensus 146 ~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~---~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (525)
+|+.||++|++.|++.+++.||.+|...+..+ +++.++.++.+.+. ......++.++..
T Consensus 92 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~------------------~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 92 EAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY------------------PEAGLAQVLLYRT 153 (452)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC------------------TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHc
Confidence 99999999999999999999999998876544 44555555543321 1235567778877
Q ss_pred cCCcHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHH--HHHHHHHHcCCCCCC
Q 009801 223 RGEDDEAFQI---LEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSM--EFLGEIYARGAGVER 297 (525)
Q Consensus 223 ~~~~~~A~~~---~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~--~~Lg~~y~~g~~~~~ 297 (525)
.+.+++++.. +.+.+..+++.+++.||.+|... ++++++++|+.||+++++.+++.+. ++||.+|..|.++.+
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~--g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKK--QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 7766666555 44556678889999999999986 5666999999999999999887777 999999999988899
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 298 NYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACK 377 (525)
Q Consensus 298 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~ 377 (525)
|+++|+.+|++++ .+++.++++||.+|..|.+ .+++++|+.+|+++++.+++.++++||.+|..|.++.+|+++|+.
T Consensus 232 d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~--~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PGYPASWVSLAQLLYDFPE--LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEA 308 (452)
T ss_dssp CHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGG--GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999999999 9999999999999764443 569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 009801 378 YFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL----KGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 378 ~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 453 (525)
||++++ .+++.++++||.+|..|.|+.+|+++|+.||+++++.+++.++++||.+|.. ..|+.+|+.||++|++.
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 999999 9999999999999999999999999999999999999999999999998774 45999999999999999
Q ss_pred ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 454 GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 454 ~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
|++.+...++.+.... +..+..+|....++-.
T Consensus 388 g~~~a~~~l~~l~~~~--------------~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 388 DTPEANDLATQLEAPL--------------TPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCHHHHHHHHHHHTTC--------------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--------------CHHHHHHHHHHHHHHH
Confidence 9999999999987541 2667778877777543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=268.71 Aligned_cols=361 Identities=17% Similarity=0.150 Sum_probs=324.4
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHH
Q 009801 90 YITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMA 165 (525)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~ 165 (525)
.+|..++. .+++++|+..++++ .+|+++.++..+|.++.. .+++++|..++++++. +.+..+++.
T Consensus 4 ~~a~~~~~-------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~a~~~~p~~~~~~~~ 72 (388)
T 1w3b_A 4 ELAHREYQ-------AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAYSN 72 (388)
T ss_dssp THHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 45666666 88899999999995 478899999999999998 8999999999999876 468899999
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHH
Q 009801 166 VAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAG 243 (525)
Q Consensus 166 la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 243 (525)
+|.+|...|++++|+..|+++++..|... .....++.++...|++++|++.++++.. |+++.
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKPDFI----------------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCcchH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999988755432 2356788999999999999999999855 57889
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYN 319 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 319 (525)
++..+|.++... +++++|+.+|+++++. +++.++..+|.++.. .+++++|+.+|+++++.+ ++.++.
T Consensus 137 ~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 137 VRSDLGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HHHHHHHHHHTT-----SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999887 4999999999999875 678999999999999 999999999999998764 789999
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLA 395 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~ 395 (525)
.+|.++.. .+++++|+..|+++++. +++.++..+|.+|.. .+++++|+..|+++++. .++.++..+|
T Consensus 208 ~lg~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 278 (388)
T 1w3b_A 208 NLGNVLKE-----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQPHFPDAYCNLA 278 (388)
T ss_dssp HHHHHHHT-----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 99999986 56999999999999876 578899999999999 99999999999999987 5789999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCC
Q 009801 396 KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 396 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~ 471 (525)
.++.. .+++++|+.+|+++++..| ..++..+|.++...|++++|+.+++++++. +++.+++++|.++..
T Consensus 279 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--- 351 (388)
T 1w3b_A 279 NALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ--- 351 (388)
T ss_dssp HHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT---
T ss_pred HHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---
Confidence 99998 9999999999999999874 678889999999999999999999999986 578899999999988
Q ss_pred CccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 472 GSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+++++|+.+|+++++.. ++++++++|.+|.
T Consensus 352 -------------~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 352 -------------QGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp -------------TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred -------------cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 668899999999999865 7999999999986
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=264.95 Aligned_cols=355 Identities=17% Similarity=0.123 Sum_probs=317.0
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.++++.|...++++ .+|+++.+...++.++.. .+++++|..+++++. +|.++.+++.+|.+|.. .
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~----~ 80 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ-------CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE----R 80 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----C
Confidence 35666777777766 678888899999998887 788999999999964 67889999999999999 9
Q ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 142 RNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
+++++|+..|++++. +++..++..+|.++...|++++|+..|+++++..|... .....++.+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~ 144 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY----------------CVRSDLGNL 144 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT----------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHH
Confidence 999999999999975 57899999999999999999999999999988755432 235578889
Q ss_pred hhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~ 295 (525)
+...|++++|++.|+++.. |+++.++..+|.++... +++++|+.+|+++++. +++.++..+|.++..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 215 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-----GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE---- 215 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----
Confidence 9999999999999999865 57899999999999888 4999999999999875 678999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.+++++|+..|++++... ++.++..+|.++.. .+++++|+.+|+++++. +++.++..+|.++.. .++
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~ 286 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-----QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGS 286 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSC
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Confidence 999999999999998764 78999999999987 67999999999999976 578899999999999 999
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
+++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| ..++..+|.++...|++++|+.+|
T Consensus 287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 287 VAEAEDCYNTALRLCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999987 678999999999998 9999999999999999865 678899999999999999999999
Q ss_pred HHHHHc--ChHHHHHHHHHHHhhh
Q 009801 448 SRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 448 ~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
+++++. .++.+++++|.++...
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHc
Confidence 999976 5789999999988763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=244.95 Aligned_cols=256 Identities=26% Similarity=0.356 Sum_probs=138.5
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHhhhh
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFL 195 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~----~~~~~~A~~~y~~~~~~~~~~~~ 195 (525)
+++++.+++.+|.+|.. .+++++|+.+|+++++.+++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 2 ~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--------- 68 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA--------- 68 (273)
T ss_dssp ---CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------
T ss_pred CCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH---------
Confidence 34555555555555555 45555555555555555555555555555554 44444444444433
Q ss_pred ccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh
Q 009801 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (525)
++.+++.+++.||.+|..+ .++.+++++|+.+|+++++
T Consensus 69 -----------------------------------------~~~~~~~a~~~lg~~~~~g-~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 69 -----------------------------------------CDLNYSNGCHLLGNLYYSG-QGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp -----------------------------------------HHTTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHCCCHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHH
Confidence 2223455555555555553 2334455555555555555
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHH
Q 009801 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGH 355 (525)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~ 355 (525)
.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+++.+|.+|..|.+... ++++|+.+|+++++.+++.++
T Consensus 107 ~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~a~ 185 (273)
T 1ouv_A 107 LKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLKDSPGC 185 (273)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 5555555555555555555555555555555555555555555555555555443322 555555555555555555555
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWA 431 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 431 (525)
+.+|.+|..|.++.+++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.+|+++++.++..+...+.
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555554444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=245.05 Aligned_cols=260 Identities=25% Similarity=0.289 Sum_probs=235.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSA 317 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a 317 (525)
+++++.+++.+|.+|...+ ++++|+.+|+++++.+++.+++.||.+|..|.++.+++++|+.+|+++++.+++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEK-----DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCChHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHH
Confidence 5688999999999998884 99999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~ 397 (525)
++.+|.+|..|.++.. ++++|+.+|+++++.+++.+++.+|.+|..|.++.+++++|+.+|+++++.+++.+++++|.+
T Consensus 77 ~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 155 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccc-CHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999998877655 999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCc
Q 009801 398 FHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL----KGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGS 473 (525)
Q Consensus 398 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~ 473 (525)
|..|.+..+++++|+.+|+++++.+++.+++.+|.++.. .+++++|+.+|+++++.+++.+++++|.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~----- 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN----- 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-----
Confidence 999888899999999999999999999999999999999 99999999999999999999999999999975
Q ss_pred cccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009801 474 MCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGDAYY 515 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 515 (525)
+.. ..+++++|+.+|++|++.++.++...|+.+..
T Consensus 231 ------g~~-~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 265 (273)
T 1ouv_A 231 ------GEG-VTRNEKQAIENFKKGCKLGAKGACDILKQLKI 265 (273)
T ss_dssp ------TSS-SSCCSTTHHHHHHHHHHHTCHHHHHHHHTCCC
T ss_pred ------CCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 15578899999999999999999998887654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-28 Score=248.13 Aligned_cols=381 Identities=17% Similarity=0.045 Sum_probs=316.2
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh-cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCH
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM-EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI 160 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~ 160 (525)
++++++.+|..++. .+++++|+..|+++.+ ..++.+++.+|.+|.. .+++++|+.+|+++++ +++.
T Consensus 5 ~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 73 (514)
T 2gw1_A 5 YALALKDKGNQFFR-------NKKYDDAIKYYNWALELKEDPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCH
T ss_pred hHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHH
Confidence 35678889998887 8899999999999753 2478999999999998 9999999999999976 5789
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc-------------------------------------------
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS------------------------------------------- 197 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~------------------------------------------- 197 (525)
.+++.+|.+|...|++++|+..|++++...+......
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD 153 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh
Confidence 9999999999999999999999999877643210000
Q ss_pred CCCCCchhh--------------------hhcccchhhhhHhhhc---cCCcHHHHHHHHHHHH----------------
Q 009801 198 KDSPVIEPI--------------------RIHNGAEENKGALRKS---RGEDDEAFQILEYQAQ---------------- 238 (525)
Q Consensus 198 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~---------------- 238 (525)
......... ..........+..... .|++++|+..++++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (514)
T 2gw1_A 154 KQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233 (514)
T ss_dssp ---CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH
T ss_pred hccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC
Confidence 000000000 0001112334443443 8999999999999987
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CH
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LY 315 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~ 315 (525)
+.++.+++.+|.++...+ ++++|+.+|+++++.+. +.++..+|.+|.. .+++++|+.+|+++++.. ++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 304 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKN-----DPLGAHEDIKKAIELFPRVNSYIYMALIMAD----RNDSTEYYNYFDKALKLDSNNS 304 (514)
T ss_dssp HHHHHHHHHHHHHHHHSS-----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SSCCTTGGGHHHHHHTTCTTCT
T ss_pred hHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhhCccHHHHHHHHHHHHH----CCCHHHHHHHHHHHhhcCcCCH
Confidence 567889999999999884 99999999999987522 8899999999999 999999999999999864 78
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 391 (525)
.++..+|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. +++.++
T Consensus 305 ~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 305 SVYYHRGQMNFI-----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR----ENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp HHHHHHHHHHHH-----TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcccCHHHH
Confidence 899999999987 56999999999999876 578899999999999 99999999999999887 578899
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc--ChHHH
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------WSSLSRWALESYL---KGDVGKAFLLYSRMAEL--GYEVA 458 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------~~a~~~l~~~~~~---~g~~~~A~~~~~~a~~~--~~~~a 458 (525)
..+|.++.. .+++++|+.+++++++..+ ..++..+|.++.. .|++++|+.+++++++. +++.+
T Consensus 376 ~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 376 NFFAEILTD----KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 999999998 9999999999999998753 2289999999999 99999999999999876 57889
Q ss_pred HHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 009801 459 QSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDA 513 (525)
Q Consensus 459 ~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 513 (525)
+..+|.++.. .+++++|+.+|+++++.. +++++..+...
T Consensus 452 ~~~la~~~~~----------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 452 KIGLAQMKLQ----------------QEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------hcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999998 778999999999999865 56666555443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=246.78 Aligned_cols=399 Identities=10% Similarity=-0.015 Sum_probs=320.7
Q ss_pred CCCCCCCccccCCC--CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hcCChHHHHHHHHhhhcCCCccCC
Q 009801 67 LDPGSWSPVFEPSI--DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-MEGDPHARSVLGFLYGMGMMRERN 143 (525)
Q Consensus 67 ~~~~~a~~~~~~~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~g~~~d 143 (525)
+++..|..+|++.. .| ++.+.+.++..+.. .+++++|+..++++. .+.++.+++.+|.+|.. .++
T Consensus 98 g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 165 (597)
T 2xpi_A 98 QQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCC-------TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK----LYD 165 (597)
T ss_dssp TCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHH-------TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH----TTC
T ss_pred cCchHHHHHHHHHHhhCC-CchHHHHHHHHHHH-------cCcHHHHHHHHHHHhccccchhHHHHHHHHHHH----Hhh
Confidence 55666777776662 33 33566777777776 778899999998863 46788899999999988 889
Q ss_pred HHHHHHHHHHHHcCC------------------CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC-------
Q 009801 144 KGKAFLYHHFAAEGG------------------NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK------- 198 (525)
Q Consensus 144 ~~~A~~~~~~a~~~~------------------~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~------- 198 (525)
+++|++.|++..... +..+++.+|.+|...|++++|+..|+++++.++.......
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhc
Confidence 999999998643322 4788999999999999999999999999887654321100
Q ss_pred ---------------------------------CCCCch------h---------hhhcccchhhhhHhhhccCCcHHHH
Q 009801 199 ---------------------------------DSPVIE------P---------IRIHNGAEENKGALRKSRGEDDEAF 230 (525)
Q Consensus 199 ---------------------------------~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~A~ 230 (525)
...... . ..........++.++...|++++|+
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 000000 0 0011223445666677778888888
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 009801 231 QILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWL 306 (525)
Q Consensus 231 ~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~ 306 (525)
+.|+++.. +.+..++..++.++...+ ++++|+..++++++. +++.++..+|.+|.. .+++++|+.+|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 396 (597)
T 2xpi_A 326 AITTKILEIDPYNLDVYPLHLASLHESG-----EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC----VNKISEARRYF 396 (597)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHT-----CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----hccHHHHHHHH
Confidence 88887754 356677777777777663 788888888877654 567899999999999 99999999999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 307 THAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 307 ~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
+++++.. +..++..++.+|.. .|++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAI-----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 9998753 78899999999987 67999999999999876 578899999999999 99999999999999
Q ss_pred HHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 383 ANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER------GP---WSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 383 ~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~------~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
++. .++.++..++.+|.. .+++++|+.+|+++++. .+ ..++..+|.++...|++++|+.++++++
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 876 678999999999998 99999999999999887 33 4688899999999999999999999998
Q ss_pred Hc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 452 EL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 452 ~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
+. .++.++..++.+|.. .+++++|+.+|+++++.. ++.++..|+.+|.
T Consensus 544 ~~~p~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLH----------------KKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HhCCCChHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 76 478999999999998 778999999999998865 8999999999885
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=215.96 Aligned_cols=199 Identities=21% Similarity=0.238 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 009801 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWL 306 (525)
Q Consensus 227 ~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~ 306 (525)
.+|+++|+++++.+++.+++.||.+|... +|+++|+.||+++++.+++.++++||.+|.. .++..|+++|+.+|
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSS-----GDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 35788899999999999999999999876 4999999999999999999999999999988 47777999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 009801 307 THAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVA 382 (525)
Q Consensus 307 ~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a 382 (525)
+++++.+++.++++||.+|..|.++.. |+++|+.+|+++++.++ +.++++||.+|..|.++.+++++|+.||+++
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGAT-DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999988877766 99999999999999988 8899999999999988899999999999999
Q ss_pred HHc-CCHHHHHHHHHHHHcCCC--CcCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009801 383 ANA-GHQKAFYQLAKMFHTGVG--LKKNLHMATALYKLVAERGPWSSLSRWAL 432 (525)
Q Consensus 383 ~~~-~~~~a~~~l~~~y~~g~g--~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 432 (525)
++. +++.++++||.+|..|.+ +.+|+++|+.||++|++.++..+...++.
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~ 208 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDR 208 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 988 888899999999998877 88899999999999999998888887765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=214.05 Aligned_cols=200 Identities=19% Similarity=0.223 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccC
Q 009801 145 GKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRG 224 (525)
Q Consensus 145 ~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (525)
++|+.+|+++++.|++.+++.||.+|...+++++|+.+|+++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a-------------------------------------- 44 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKA-------------------------------------- 44 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------------------------
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------------------
Confidence 356777777777777888888887777777776666666654
Q ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 009801 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALE 304 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~ 304 (525)
++.+++.+++.||.+|..+ ++++|+++|+.||+++++.+++.++++||.+|..|.++.+|+++|+.
T Consensus 45 ------------~~~g~~~a~~~lg~~y~~~--g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 110 (212)
T 3rjv_A 45 ------------AAQGDGDALALLAQLKIRN--PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAIT 110 (212)
T ss_dssp ------------HHTTCHHHHHHHHHHTTSS--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred ------------HHcCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence 4557778888888888763 66778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCC----HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhHHHHHHHHHHcCCC--CcCCHHHHHH
Q 009801 305 WLTHAARQQL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGGHYNLGVMYYKGIG--VKRDVKLACK 377 (525)
Q Consensus 305 ~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~--~~~~~~~A~~ 377 (525)
+|+++++.++ +.++++||.+|..|.++.+ |+++|+.+|+++++. +++.++++||.+|..|.+ +.+++++|+.
T Consensus 111 ~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~ 189 (212)
T 3rjv_A 111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALH 189 (212)
T ss_dssp HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 8888888887 8888888888888887765 888888888888887 788888888888888776 7888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 009801 378 YFLVAANAGHQKAFYQLAKM 397 (525)
Q Consensus 378 ~~~~a~~~~~~~a~~~l~~~ 397 (525)
||++|++.|+..+...++.+
T Consensus 190 ~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 190 WLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 88888888888888887754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=232.80 Aligned_cols=368 Identities=14% Similarity=0.090 Sum_probs=295.4
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNI 160 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~ 160 (525)
+++++.+|..++. .+++++|+..|+++. +|.++.+++.+|.+|.. .+++++|+..|++++. ++++
T Consensus 25 a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 93 (537)
T 3fp2_A 25 AVQLKNRGNHFFT-------AKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHH-------TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchH
Confidence 6778888998887 888999999999964 67899999999999998 8999999999999976 5689
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCC---------------------------CCCchh--hh----
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD---------------------------SPVIEP--IR---- 207 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~---------------------------~~~~~~--~~---- 207 (525)
.+++.+|.++...|++++|+..|+ ++...+........ ...... +.
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 999999999999999999999995 54333221110000 000000 00
Q ss_pred ----------------hccc---chhhh--------hHhhhccCCcHHHHHHHHHHHHc--CCH-------HHHHHHHHH
Q 009801 208 ----------------IHNG---AEENK--------GALRKSRGEDDEAFQILEYQAQK--GNA-------GAMYKIGLF 251 (525)
Q Consensus 208 ----------------~~~~---~~~~~--------~~~~~~~~~~~~A~~~~~~~~~~--~~~-------~a~~~Lg~~ 251 (525)
.... ....+ +......+++++|+..++++... +++ .++..+|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 0000 01111 22222335789999999998554 554 367888888
Q ss_pred HHhcCCCCccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC
Q 009801 252 YYFGLRGLRRDRTKALMWFSKAADKG-EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKG 328 (525)
Q Consensus 252 y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g 328 (525)
+... +++++|+.+|+++++.. .+.++..+|.++.. .+++++|+.+|+++++.. ++.++..+|.++..
T Consensus 253 ~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 322 (537)
T 3fp2_A 253 HFLK-----NNLLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI- 322 (537)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHhc-----ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-
Confidence 8877 49999999999999862 37899999999998 999999999999998864 78999999999987
Q ss_pred CCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 009801 329 YGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGL 404 (525)
Q Consensus 329 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~ 404 (525)
.+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. +++.++..+|.++..
T Consensus 323 ----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 390 (537)
T 3fp2_A 323 ----LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD---- 390 (537)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----
T ss_pred ----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----
Confidence 56999999999999876 578899999999999 99999999999999987 678899999999998
Q ss_pred cCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERGP--------WSSLSRWALESYLK----------GDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--------~~a~~~l~~~~~~~----------g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.+++++|+.+|+++++..+ ...++.+|.++... |++++|+.+|+++++. +++.++.++|.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 470 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999997752 23466778889998 9999999999999976 57889999999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
++.. .+++++|+.+|+++++..
T Consensus 471 ~~~~----------------~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 471 LKLQ----------------MEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHH----------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHH----------------hccHHHHHHHHHHHHHhC
Confidence 9998 778999999999999865
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=233.93 Aligned_cols=352 Identities=13% Similarity=0.051 Sum_probs=253.5
Q ss_pred CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 009801 122 GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE-----------GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (525)
Q Consensus 122 ~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~-----------~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~ 190 (525)
..+..+..||.+|.. .|++++|+++|++|++ .....++.++|.+|...|++++|+.+|++++++.
T Consensus 49 ~~a~~yn~Lg~~~~~----~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHL----KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 346677889999998 8999999999999974 2346788999999999999999999999999876
Q ss_pred HhhhhccCCCCCchhhhhcccchhhhhH--hhhccCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHH
Q 009801 191 VNSFLISKDSPVIEPIRIHNGAEENKGA--LRKSRGEDDEAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKA 266 (525)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A 266 (525)
+....... ... .....+.+. +....+++++|+++|+++. +|++++++..+|.++... +..++.++|
T Consensus 125 ~~~~~~~~--~~~------~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l--~~~~~~~~a 194 (472)
T 4g1t_A 125 EKFSSPYR--IES------PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL--DNWPPSQNA 194 (472)
T ss_dssp HHSCCSSC--CCC------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHSCCCCCT
T ss_pred Hhcccccc--hhh------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCchHHHHH
Confidence 65321100 000 011223333 3445678999999999985 468999999999987654 233577889
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 267 LMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 267 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
+..|+++++. +++.++..+|..+..-....+++++|+.+|++++... .+.++..+|.+|.. .+++++|+..
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-----~~~~~~A~~~ 269 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-----KDEPDKAIEL 269 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-----cCchHHHHHH
Confidence 9999999875 6788888888776653333678999999999998764 88999999999987 6799999999
Q ss_pred HHHHHhC--CChhHHHHHHHHHHcCC---------------CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC
Q 009801 343 FEKAADN--EEAGGHYNLGVMYYKGI---------------GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 343 ~~~a~~~--~~~~a~~~lg~~y~~g~---------------~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g 403 (525)
|+++++. +++.+++.+|.+|.... .....+++|+..|+++.+. .+..++..+|.+|..
T Consensus 270 ~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~--- 346 (472)
T 4g1t_A 270 LKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL--- 346 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH---
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH---
Confidence 9999876 67889999999986410 0123467888999998876 567789999999998
Q ss_pred CcCCHHHHHHHHHHHHHcCChH-----HHHHHHH-HHHhcCCHHHHHHHHHHHHHc------------------------
Q 009801 404 LKKNLHMATALYKLVAERGPWS-----SLSRWAL-ESYLKGDVGKAFLLYSRMAEL------------------------ 453 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~~~~~-----a~~~l~~-~~~~~g~~~~A~~~~~~a~~~------------------------ 453 (525)
.+++++|+.+|+++++..+.. .++.+|. ..+..|++++|+.+|++|++.
T Consensus 347 -~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 347 -ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425 (472)
T ss_dssp -TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987422 3456664 356889999999999999754
Q ss_pred --ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 009801 454 --GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGD 512 (525)
Q Consensus 454 --~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 512 (525)
.++.+++++|.+|.. .+++++|+.+|++|++.+ +|.+...+|+
T Consensus 426 ~p~~~~~~~~LG~~~~~----------------~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 426 NGADSEALHVLAFLQEL----------------NEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp CC-CTTHHHHHHHHHHH----------------HHHCC-------------------------
T ss_pred CCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 245689999999988 889999999999999987 6788877774
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-25 Score=224.16 Aligned_cols=316 Identities=15% Similarity=0.069 Sum_probs=245.1
Q ss_pred HHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHH
Q 009801 108 MEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLY 183 (525)
Q Consensus 108 ~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y 183 (525)
...+...+.++ .+|.++.+++.+|..|.. .+++++|+.+|+++++ .++..+++.+|.++...|++++|+..|
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444445553 366778888888888888 8889999999988875 467888888999998888898888888
Q ss_pred HHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCH
Q 009801 184 AELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDR 263 (525)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~ 263 (525)
+++++. .+.++.++..+|.+|...+ ++
T Consensus 84 ~~al~~------------------------------------------------~p~~~~~~~~l~~~~~~~g-----~~ 110 (450)
T 2y4t_A 84 TKVIQL------------------------------------------------KMDFTAARLQRGHLLLKQG-----KL 110 (450)
T ss_dssp HHHHHH------------------------------------------------CTTCHHHHHHHHHHHHHTT-----CH
T ss_pred HHHHhc------------------------------------------------CCCcHHHHHHHHHHHHHcC-----CH
Confidence 887653 3455677777888887773 78
Q ss_pred HHHHHHHHHHHhcCC--H---HHHH------------HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 009801 264 TKALMWFSKAADKGE--P---QSME------------FLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYL 324 (525)
Q Consensus 264 ~~A~~~~~~a~~~~~--~---~a~~------------~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 324 (525)
++|+.+|+++++.+. + .++. .+|.++.. .+++++|+.+|+++++.. ++.++..+|.+
T Consensus 111 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 186 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYTAAIAFLDKILEVCVWDAELRELRAEC 186 (450)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 888888888776532 3 3433 34666887 889999999999988763 78888999999
Q ss_pred HHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH------
Q 009801 325 YVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQL------ 394 (525)
Q Consensus 325 ~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l------ 394 (525)
|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|++++.. ++...+..+
T Consensus 187 ~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 187 FIK-----EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHH-----TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 886 56899999999998765 678889999999999 89999999999998876 455555444
Q ss_pred ------HHHHHcCCCCcCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHH
Q 009801 395 ------AKMFHTGVGLKKNLHMATALYKLVAERGPW------SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQS 460 (525)
Q Consensus 395 ------~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~ 460 (525)
|.++.. .+++++|+.+|+++++..+. ..+..+|.++...|++++|+.+++++++. +++.++.
T Consensus 258 ~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 258 NKLIESAEELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 778877 88999999999999988653 36778899999999999999999999865 5788999
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDA 513 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 513 (525)
++|.++.. .+++++|+.+|+++++.. +++++..|+.+
T Consensus 334 ~l~~~~~~----------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 334 DRAEAYLI----------------EEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHH----------------TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHH----------------hcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999988 678899999999998764 78888888844
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-25 Score=229.61 Aligned_cols=341 Identities=18% Similarity=0.115 Sum_probs=293.6
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCC
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSP 201 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~ 201 (525)
++++++.+|..+.. .+++++|+.+|++++.. .++.++..+|.++...|++++|+..++++++..|.+.
T Consensus 5 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------- 73 (514)
T 2gw1_A 5 YALALKDKGNQFFR----NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS------- 73 (514)
T ss_dssp HHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH-------
T ss_pred hHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH-------
Confidence 46788999999998 99999999999999874 3789999999999999999999999999998755432
Q ss_pred CchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCC----------------------------------------
Q 009801 202 VIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGN---------------------------------------- 241 (525)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------------------------- 241 (525)
.....++.++...|++++|+..|+++.....
T Consensus 74 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 74 ---------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp ---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred ---------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2356789999999999999999998755432
Q ss_pred -----------------------------------------HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh-----
Q 009801 242 -----------------------------------------AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----- 275 (525)
Q Consensus 242 -----------------------------------------~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----- 275 (525)
+.+++.+|.++... ...+++++|+.+|+++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK--RSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS--CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh--hhhccHHHHHHHHHHHHHHhhhh
Confidence 67778888877651 112599999999999998
Q ss_pred -----------cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 009801 276 -----------KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEKKNYTKAKEYF 343 (525)
Q Consensus 276 -----------~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~ 343 (525)
..++.+++.+|.++.. .+++++|+.+|+++++.. .+.++..+|.++.. .+++++|+.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~ 293 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-----RNDSTEYYNYF 293 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-----SSCCTTGGGHH
T ss_pred hccCccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-----CCCHHHHHHHH
Confidence 3456789999999999 999999999999998764 38889999999987 56999999999
Q ss_pred HHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 344 EKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 344 ~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
+++++. .++.++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.++++++
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 294 DKALKLDSNNSSVYYHRGQMNFI----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR----ENKFDDCETLFSEAK 365 (514)
T ss_dssp HHHHTTCTTCTHHHHHHHHHHHH----TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TTCHHHHHHHHHHHH
T ss_pred HHHhhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 999976 578899999999999 99999999999999987 577899999999987 999999999999999
Q ss_pred HcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--h------HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHH
Q 009801 420 ERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (525)
Q Consensus 420 ~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~------~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (525)
+.. .+.++..+|.++...|++++|+.+++++++.. + ..++.++|.++...+ ..++++
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~ 432 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP-------------TVENFI 432 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC-------------CTTHHH
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-------------hcCCHH
Confidence 886 47788999999999999999999999998763 3 238999999987510 035789
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 490 CAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 490 ~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
+|+.+|+++++.. ++.+++.+|.+|.
T Consensus 433 ~A~~~~~~a~~~~~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 433 EATNLLEKASKLDPRSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 9999999998754 7899999999997
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-24 Score=210.58 Aligned_cols=303 Identities=16% Similarity=0.075 Sum_probs=240.9
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCC
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDS 200 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~ 200 (525)
++++++.+|..+.. .+++++|+..|+++++ ++++.+++.+|.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------- 66 (359)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence 35666777777776 7777777777777754 356777777777777777777777777776542
Q ss_pred CCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC--
Q 009801 201 PVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-- 278 (525)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-- 278 (525)
.++++.++..+|.++...+ ++++|+.+|+++++...
T Consensus 67 -------------------------------------~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 67 -------------------------------------KMDFTAARLQRGHLLLKQG-----KLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp -------------------------------------CTTCHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHTSCCCH
T ss_pred -------------------------------------CCCcchHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCcc
Confidence 3445666777777776663 77777777777776533
Q ss_pred ---HHHHHHH------------HHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 009801 279 ---PQSMEFL------------GEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKE 341 (525)
Q Consensus 279 ---~~a~~~L------------g~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~ 341 (525)
+.++..+ |.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~ 175 (359)
T 3ieg_A 105 QEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFLDKILEVCVWDAELRELRAECFIK-----EGEPRKAIS 175 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-----CCCHHHHHH
Confidence 3344444 788888 999999999999998764 78999999999987 569999999
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH------------HHHHHHHcCCCCc
Q 009801 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFY------------QLAKMFHTGVGLK 405 (525)
Q Consensus 342 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~------------~l~~~y~~g~g~~ 405 (525)
+++++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..++. .+|.++.. .
T Consensus 176 ~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~ 247 (359)
T 3ieg_A 176 DLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----D 247 (359)
T ss_dssp HHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH----c
Confidence 99999876 578899999999999 99999999999999876 4444433 34777887 8
Q ss_pred CCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccC
Q 009801 406 KNLHMATALYKLVAERGPW------SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMG 477 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~ 477 (525)
+++++|+..++++++..+. .++..+|.++...|++++|+.+++++++. +++.++.++|.++..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 318 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI--------- 318 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---------
Confidence 9999999999999988753 34667899999999999999999999886 578899999999988
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 478 ESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 478 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+++++|+.+|+++++.. ++++...|+.++.
T Consensus 319 -------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 319 -------EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp -------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 678999999999999865 6888888888775
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=236.01 Aligned_cols=338 Identities=16% Similarity=0.040 Sum_probs=292.8
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhh---------------------------
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYG--------------------------- 135 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~--------------------------- 135 (525)
+.+++.+|..+.. .+++++|+..|+++. ++.+..++..++.++.
T Consensus 200 ~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 200 ASMCYLRGQVYTN-------LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 6678888888887 888999999999965 5678888887766442
Q ss_pred -------cCCCccCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhh
Q 009801 136 -------MGMMRERNKGKAFLYHHFAAEG-GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIR 207 (525)
Q Consensus 136 -------~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 207 (525)
......+++++|+.+|+++.+. .+..++..++.+|...|++++|+.+|+++++..+.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------- 338 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN-------------- 338 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc--------------
Confidence 1111367899999999998774 689999999999999999999999999998764432
Q ss_pred hcccchhhhhHhhhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHH
Q 009801 208 IHNGAEENKGALRKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSME 283 (525)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 283 (525)
......++.++...|++++|++.+++... +.++.++..+|.+|...+ ++++|+.+|+++++. .+..++.
T Consensus 339 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~ 411 (597)
T 2xpi_A 339 --LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-----KISEARRYFSKSSTMDPQFGPAWI 411 (597)
T ss_dssp --CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHhCCCCHHHHH
Confidence 13356678888999999999999999865 478999999999999884 999999999999874 6788999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH
Q 009801 284 FLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG 359 (525)
Q Consensus 284 ~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 359 (525)
.+|.+|.. .+++++|+.+|+++++.. +..++..+|.+|.. .|++++|+.+|+++++. .++.++..+|
T Consensus 412 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 412 GFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-----LGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999999 999999999999998764 78899999999987 67999999999999875 5788999999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc------C-C--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA------G-H--QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~------~-~--~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
.+|.. .+++++|+.+|+++++. . + ..++..++.++.. .+++++|+.+++++++.++ +.++.
T Consensus 483 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 483 VVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----LKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999 99999999999999875 2 1 6789999999998 9999999999999998874 67889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
.+|.++...|++++|+.+|+++++. +++.++..++.+|.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999987 57889999988763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-24 Score=218.29 Aligned_cols=366 Identities=12% Similarity=0.037 Sum_probs=280.3
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~- 156 (525)
.+|.++.+++.+|..++. .+++++|+..|+++. .+.++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 21 ~~p~~~~~~~~~~~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLA-------AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA----MGKSKAALPDLTKVIQL 89 (450)
T ss_dssp --CHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 466778889999999887 889999999999965 67889999999999998 8999999999999986
Q ss_pred -CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHH
Q 009801 157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEY 235 (525)
Q Consensus 157 -~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 235 (525)
.++..++..+|.+|...|++++|+..|+++++..+... .+...+..
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------------------------~~~~~~~~ 136 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN---------------------------------EEKEAQSQ 136 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH---------------------------------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------------------------------hhHHHHHH
Confidence 46899999999999999999999999999876432210 00001111
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-
Q 009801 236 QAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ- 312 (525)
Q Consensus 236 ~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~- 312 (525)
..........+.+|.++... +++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++.
T Consensus 137 l~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGS-----GDYTAAIAFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 11111233456667777766 3888888888888764 567888888888888 88888888888888764
Q ss_pred -CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHH------------HHHHHcCCCCcCCHHHHHH
Q 009801 313 -QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNL------------GVMYYKGIGVKRDVKLACK 377 (525)
Q Consensus 313 -~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l------------g~~y~~g~~~~~~~~~A~~ 377 (525)
.++.++..+|.++.. .+++++|+.+|+++++. +++.++..+ |.++.. .+++++|+.
T Consensus 208 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~ 278 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQ-----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATS 278 (450)
T ss_dssp CSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 478888888888876 56888888888888765 344554444 999999 999999999
Q ss_pred HHHHHHHc--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009801 378 YFLVAANA--GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR 449 (525)
Q Consensus 378 ~~~~a~~~--~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~ 449 (525)
+|+++++. ++ ...+..+|.++.. .+++++|+.+++++++..+ +.++..+|.++...|++++|+.+|++
T Consensus 279 ~~~~~l~~~p~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 279 KYESVMKTEPSIAEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999887 33 3478889999997 9999999999999998864 68899999999999999999999999
Q ss_pred HHHc--ChHHHHHHHHHHHhhhC-----CCccccCCCCCCCChHhHHHHHHHHHH-HHhCC-----CH-------HHHHH
Q 009801 450 MAEL--GYEVAQSNAAWILDKYG-----EGSMCMGESGFCTDAERHQCAHSLWWQ-ASEQG-----NE-------HAALL 509 (525)
Q Consensus 450 a~~~--~~~~a~~~la~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~-----~~-------~a~~~ 509 (525)
+++. +++.++..++.+....+ +.+..+|... ..+.+++.+.|++ +++.. .. .....
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~----~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~ 430 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR----NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFID 430 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST----TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc----cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Confidence 9876 57888889987654422 3333344211 2244678888887 55432 12 24556
Q ss_pred HHHHHH
Q 009801 510 IGDAYY 515 (525)
Q Consensus 510 lg~~y~ 515 (525)
++..|+
T Consensus 431 i~~ay~ 436 (450)
T 2y4t_A 431 IAAAKE 436 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888877
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-24 Score=206.43 Aligned_cols=316 Identities=12% Similarity=0.045 Sum_probs=253.6
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCC
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN 159 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~ 159 (525)
++++++.+|..++. .+++++|+..|+++. +|.++.+++.+|.+|.. .+++++|+.+|+++++ +++
T Consensus 2 ~~~~~~~~~~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 70 (359)
T 3ieg_A 2 DVEKHLELGKKLLA-------AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDF 70 (359)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCc
Confidence 45678899998887 889999999999964 67889999999999998 9999999999999976 468
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH---hhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAV---NSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ 236 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 236 (525)
..++..+|.++...|++++|+..|+++++..+ ..... ...++
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~l~------------------- 115 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA----------------ESQLV------------------- 115 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHH----------------HHHHH-------------------
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHH----------------HHHHH-------------------
Confidence 89999999999999999999999999976433 21100 00010
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
..........+|.++... +++++|+.+++++++. +++.++..+|.++.. .+++++|+.+++++++..
T Consensus 116 -~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 116 -KADEMQRLRSQALDAFDG-----ADYTAAITFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp -HHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence 001123455567777777 4888888888888764 567888888888888 888888888888888753
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHH------------HHHHHHHHcCCCCcCCHHHHHHH
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGH------------YNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~------------~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
++.++..+|.++.. .+++++|+.+++++++. +++.++ ..+|.++.. .+++++|+..
T Consensus 186 ~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~ 256 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQ-----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSK 256 (359)
T ss_dssp CCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 78888888888876 56888888888888765 334433 345888999 9999999999
Q ss_pred HHHHHHc--CCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 379 FLVAANA--GHQ----KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 379 ~~~a~~~--~~~----~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
|+++++. .++ .++..+|.++.. .+++++|+.+++++++..| +.++..+|.++...|++++|+.+|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 257 YESVMKTEPSVAEYTVRSKERICHCFSK----DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999986 333 446678999998 9999999999999999864 778899999999999999999999999
Q ss_pred HHc--ChHHHHHHHHHHHhh
Q 009801 451 AEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 451 ~~~--~~~~a~~~la~~~~~ 468 (525)
++. +++.+...++.+...
T Consensus 333 ~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 333 QEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHH
Confidence 987 467777777776644
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=221.53 Aligned_cols=340 Identities=13% Similarity=-0.013 Sum_probs=248.7
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh-----------cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM-----------EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHF 153 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----------~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~ 153 (525)
+..+..+|.++.. .|++++|+.+|+++.+ +....++.++|.+|.. .+++++|+.+|++
T Consensus 51 a~~yn~Lg~~~~~-------~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----~g~~~~A~~~~~k 119 (472)
T 4g1t_A 51 ATMCNLLAYLKHL-------KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----MGRLSDVQIYVDK 119 (472)
T ss_dssp CHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 4556678998887 8889999999999742 3446678899999999 9999999999999
Q ss_pred HHcC----------CCHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh--
Q 009801 154 AAEG----------GNIQSKMAVAYTYL--RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL-- 219 (525)
Q Consensus 154 a~~~----------~~~~a~~~la~~y~--~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 219 (525)
+... ..+.++..+|..+. ..+++++|+.+|+++++.+|.+... ...++.+
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~----------------~~~~~~~~~ 183 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF----------------TSGLAIASY 183 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH----------------HHHHHHHHH
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH----------------HHHHHHHHH
Confidence 8742 35677888776655 4578999999999999986654321 2333433
Q ss_pred -hhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCC
Q 009801 220 -RKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAG 294 (525)
Q Consensus 220 -~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~ 294 (525)
+...++.++|++.++++++ +.++.++..+|..+...+ ...+++++|+.+|++++.. .++.++..+|.+|..
T Consensus 184 ~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~--- 259 (472)
T 4g1t_A 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR-EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR--- 259 (472)
T ss_dssp HHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH---
T ss_pred HhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH---
Confidence 3456888999999999865 578999999998887663 4556899999999999875 678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCC-----------C---CCccCHHHHHHHHHHHHhC--CChhHHH
Q 009801 295 VERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGY-----------G---VEKKNYTKAKEYFEKAADN--EEAGGHY 356 (525)
Q Consensus 295 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~-----------~---~~~~~~~~A~~~~~~a~~~--~~~~a~~ 356 (525)
.+++++|+..|+++++.. ++.++..+|.+|.... + .....+++|+..++++++. .++.++.
T Consensus 260 -~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 338 (472)
T 4g1t_A 260 -KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH
T ss_pred -cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh
Confidence 999999999999999864 7899999999875310 0 0012467889999998765 5778999
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--H---HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---------
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANAGH--Q---KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--------- 422 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~--~---~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--------- 422 (525)
.+|.+|.. .+++++|+.+|+++++... . ..+..+|.+... ..+++++|+.+|+++++..
T Consensus 339 ~lg~~~~~----~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 339 ILASLHAL----ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY---QMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---TSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hHHHHHHH----hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999 9999999999999998732 1 234566655443 2789999999999998764
Q ss_pred -----------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHH
Q 009801 423 -----------------PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSNAA 463 (525)
Q Consensus 423 -----------------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~la 463 (525)
++.++..+|.++..+|++++|+.+|++|++.+ +|.+...+|
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 24678899999999999999999999999875 566666655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-24 Score=218.61 Aligned_cols=349 Identities=14% Similarity=0.066 Sum_probs=284.3
Q ss_pred ccccCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCC
Q 009801 63 TEENLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGM 138 (525)
Q Consensus 63 ~~~~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~ 138 (525)
....+++..|+..|+++ .+|+++.+++.+|.+++. .+++++|+..++++. +|+++.+++.+|.+|..
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 105 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS-------TGDLEKVIEFTTKALEIKPDHSKALLRRASANES-- 105 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--
Confidence 44457899999999998 778889999999999987 889999999999964 68899999999999998
Q ss_pred CccCCHHHHHHHHHHHHcCC--CHH-------------------------------------------------------
Q 009801 139 MRERNKGKAFLYHHFAAEGG--NIQ------------------------------------------------------- 161 (525)
Q Consensus 139 g~~~d~~~A~~~~~~a~~~~--~~~------------------------------------------------------- 161 (525)
.+++++|+..|+ ++... ...
T Consensus 106 --~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 106 --LGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp --HTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred --cCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 899999999996 54321 110
Q ss_pred -------------HHHHHHHHHhc--------cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 162 -------------SKMAVAYTYLR--------QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 162 -------------a~~~la~~y~~--------~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
....++.++.. .+++++|+..|+++++..+.+... ..........++.++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~---------~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL---------RENAALALCYTGIFH 253 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH---------HHHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh---------hHHHHHHHHHHHHHH
Confidence 22233333332 247888888888887665442110 111112355678889
Q ss_pred hccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC
Q 009801 221 KSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER 297 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~ 297 (525)
...|++++|++.++++... .++.++..+|.++... +++++|+.+|+++++. +++.++..+|.+|.. .+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 324 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADK-----ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----LQ 324 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCS-----SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred HhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-----cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cC
Confidence 9999999999999998665 2389999999999777 5999999999999875 678999999999999 99
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHH
Q 009801 298 NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVK 373 (525)
Q Consensus 298 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~ 373 (525)
++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++++. +++.++..+|.++.. .++++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 395 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-----QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD----RGDFD 395 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHH
Confidence 9999999999998864 68899999999987 57999999999999876 678899999999999 99999
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCCc----------CCHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 009801 374 LACKYFLVAANAG--------HQKAFYQLAKMFHTGVGLK----------KNLHMATALYKLVAERGP--WSSLSRWALE 433 (525)
Q Consensus 374 ~A~~~~~~a~~~~--------~~~a~~~l~~~y~~g~g~~----------~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 433 (525)
+|+.+|+++++.. ....+..+|.++.. . +++++|+.+|+++++..| ..++..+|.+
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR----QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH----HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH----HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999998752 12335667777776 6 999999999999999874 6788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 009801 434 SYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+...|++++|+.+|+++++..
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-23 Score=197.64 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER-NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNY 336 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 336 (525)
++++|+.+++++++. .++.+++.+|.++.. .+ ++++|+.+|+++++.. ++.++..+|.++.. .+++
T Consensus 71 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-----~~~~ 141 (330)
T 3hym_B 71 KANELFYLSHKLVDLYPSNPVSWFAVGCYYLM----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV-----ESEH 141 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH-----HTCH
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----ccCH
Confidence 444444444444432 234444444444444 44 4444444444444332 34444444444443 3344
Q ss_pred HHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 337 TKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMAT 412 (525)
Q Consensus 337 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~ 412 (525)
++|+.+|+++++. ++..++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 213 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAE 213 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHH
Confidence 4444444444432 233444445555544 44555555555544443 334444455555444 44555555
Q ss_pred HHHHHHHHcC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCC
Q 009801 413 ALYKLVAERG-----------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGES 479 (525)
Q Consensus 413 ~~~~~a~~~~-----------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~ 479 (525)
.+++++++.. ...++..+|.++...|++++|+.+++++++. .++.++.++|.++..
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----------- 282 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL----------- 282 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH-----------
Confidence 5555554421 1334455555555555555555555555443 244455555555554
Q ss_pred CCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 480 GFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+++++|+.+|+++++.. ++.++..||.++.
T Consensus 283 -----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 283 -----MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp -----HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 444555555555554432 4555555555553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-22 Score=194.38 Aligned_cols=274 Identities=16% Similarity=0.093 Sum_probs=198.8
Q ss_pred cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC
Q 009801 121 EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (525)
Q Consensus 121 ~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~ 198 (525)
+.++..+..+|..+.. .+++++|+.+|++++.. .+..++..++.++...+++++|+..++++++
T Consensus 19 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---------- 84 (330)
T 3hym_B 19 QENLDVVVSLAERHYY----NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---------- 84 (330)
T ss_dssp -CCCTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH----------
T ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH----------
Confidence 3455555666665555 55666666666665442 3455555566666666666666666665543
Q ss_pred CCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--
Q 009801 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (525)
..+.++.+++.+|.++...+ .++++|+.+|+++++.
T Consensus 85 --------------------------------------~~~~~~~~~~~l~~~~~~~~----~~~~~A~~~~~~a~~~~~ 122 (330)
T 3hym_B 85 --------------------------------------LYPSNPVSWFAVGCYYLMVG----HKNEHARRYLSKATTLEK 122 (330)
T ss_dssp --------------------------------------HCTTSTHHHHHHHHHHHHSC----SCHHHHHHHHHHHHTTCT
T ss_pred --------------------------------------hCcCCHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhCC
Confidence 23455677777787776662 2777888888887765
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
.++.++..+|.++.. .+++++|+.+|+++++.. +..++..+|.++.. .+++++|+.+++++++. .++
T Consensus 123 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 123 TYGPAWIAYGHSFAV----ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-----TNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp TCTHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCTTCH
T ss_pred ccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhCCCCh
Confidence 456777888888877 778888888888887653 56777778888776 45888888888888765 466
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
.++..+|.+|.. .+++++|+.+++++++. ..+.++..+|.++.. .+++++|+.+++++++.
T Consensus 194 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 194 FVMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhh
Confidence 778888888888 88888888888888763 345688888888887 88888888888888877
Q ss_pred C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 422 G--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 422 ~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
. +..++..+|.++...|++++|+.+++++++. +++.++..++.++.
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 6 3678888888888899999999999888776 57888888888874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=195.88 Aligned_cols=222 Identities=15% Similarity=0.089 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LY 315 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~ 315 (525)
.++.+++.+|.+|...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +.
T Consensus 96 ~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENE-----QELLAISALRRCLELKPDNQTALMALAVSFTN----ESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp TCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSTTTG
T ss_pred CCHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcH
Confidence 34555555555555552 555555555555543 345555555555555 555555555555555432 11
Q ss_pred ----------------HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--C--ChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 316 ----------------SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E--EAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 316 ----------------~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
.....++.++. .+++++|+.+|+++++. . ++.++..+|.+|.. .+++++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A 236 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLLS------DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEYDKA 236 (368)
T ss_dssp GGCC---------------CTTHHHHH------HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHhh------cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cCCHHHH
Confidence 11225666663 45999999999999876 3 56889999999999 9999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009801 376 CKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 376 ~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..+ ..++..+|.++...|++++|+.+|++++
T Consensus 237 ~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 237 VDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999986 578899999999998 9999999999999998864 6788999999999999999999999998
Q ss_pred Hc--Ch-----------HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 452 EL--GY-----------EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 452 ~~--~~-----------~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
+. .+ ..++.++|.++.. .+++++|..+++++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSM----------------LGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHH----------------HTCGGGHHHHHTTCHH
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHH----------------hCChHhHHHhHHHHHH
Confidence 76 33 7899999999998 5677888888876654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-21 Score=187.97 Aligned_cols=291 Identities=15% Similarity=0.109 Sum_probs=195.5
Q ss_pred ccCCCCCCCc-cccCC--CCCCC----CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhh
Q 009801 65 ENLDPGSWSP-VFEPS--IDPGA----INGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYG 135 (525)
Q Consensus 65 ~~~~~~~a~~-~~~~~--~~~~~----~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~ 135 (525)
..+++.+|+. .|+++ ..+.+ ..+++.+|..++. .+++++|+.+++++. ++.++.+++.+|.+|.
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-------EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3467778887 77766 33333 5678999999887 889999999999976 5688999999999999
Q ss_pred cCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccch
Q 009801 136 MGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAE 213 (525)
Q Consensus 136 ~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (525)
. .+++++|+.+|+++++ +++..++..+|.+|...|++++|+..|++++...+........
T Consensus 110 ~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------------- 171 (368)
T 1fch_A 110 E----NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP-------------- 171 (368)
T ss_dssp H----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred H----CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH--------------
Confidence 8 9999999999999976 4689999999999999999999999999998865443211000
Q ss_pred hhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--C--CHHHHHHHHHHH
Q 009801 214 ENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--G--EPQSMEFLGEIY 289 (525)
Q Consensus 214 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~Lg~~y 289 (525)
.+ .. ............+|.++ .. +++++|+.+|+++++. . ++.++..+|.+|
T Consensus 172 --~~-------~~---------~~~~~~~~~~~~~~~~~-~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 172 --AE-------EG---------AGGAGLGPSKRILGSLL-SD-----SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp --------------------------------CTTHHHH-HH-----HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred --HH-------HH---------hhhhcccHHHHHHHHHh-hc-----ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 00 00 00001112223445554 22 2677777777776654 2 456667777777
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcC
Q 009801 290 ARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKG 365 (525)
Q Consensus 290 ~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g 365 (525)
.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|..
T Consensus 228 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~- 297 (368)
T 1fch_A 228 NL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN- 297 (368)
T ss_dssp HH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 76 677777777777776543 56677777777765 45777777777776654 456677777777777
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CC-----------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 366 IGVKRDVKLACKYFLVAANA--GH-----------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~~~--~~-----------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
.+++++|+.+|+++++. ++ ..++..+|.++.. .+++++|..+++++++.
T Consensus 298 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 298 ---LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM----LGQSDAYGAADARDLST 359 (368)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH----HTCGGGHHHHHTTCHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH----hCChHhHHHhHHHHHHH
Confidence 77777777777777654 33 5677777777776 77777777777666543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=190.01 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..+++.+|..+...|++++|+..|+++++ ..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------------------------------------~~p 96 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL------------------------------------------------QDP 96 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH------------------------------------------------HCT
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------------hCc
Confidence 35588889999999999999999988865 345
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C-
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L- 314 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~- 314 (525)
+++.+++.+|.+|...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +
T Consensus 97 ~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~ 167 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENE-----NEQAAIVALQRCLELQPNNLKALMALAVSYTN----TSHQQDACEALKNWIKQNPKYK 167 (365)
T ss_dssp TCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHhCccch
Confidence 67889999999999884 999999999999875 678999999999999 999999999999998764 1
Q ss_pred ---------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--C--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 315 ---------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--E--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 315 ---------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
+.....+|.++.. .+++++|+.+|+++++. . ++.+++.+|.+|.. .+++++|+.+|++
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 168 YLVKNKKGSPGLTRRMSKSPVD-----SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----SGEFNRAIDAFNA 238 (365)
T ss_dssp CC-------------------C-----CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 2233445777765 67999999999999876 3 67899999999999 9999999999999
Q ss_pred HHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---
Q 009801 382 AANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--- 454 (525)
Q Consensus 382 a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--- 454 (525)
+++. +++.++..+|.++.. .+++++|+.+|+++++..| ..++..+|.++...|++++|+.+|+++++..
T Consensus 239 al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 239 ALTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9987 678999999999998 9999999999999999874 7788999999999999999999999998763
Q ss_pred -----------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHH
Q 009801 455 -----------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQ 497 (525)
Q Consensus 455 -----------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 497 (525)
+..++.+++.++.. .++.+.|....++
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 315 RNQQQVPHPAISGNIWAALRIALSL----------------MDQPELFQAANLG 352 (365)
T ss_dssp ------------CHHHHHHHHHHHH----------------HTCHHHHHHHHTT
T ss_pred CCCcccchhhhHHHHHHHHHHHHHH----------------cCcHHHHHHHHHh
Confidence 25678889999887 5566777666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-21 Score=187.93 Aligned_cols=190 Identities=13% Similarity=0.049 Sum_probs=137.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG------------EPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~------------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
.++.++..+|.+|...+ ++++|+.+|+++++.. .+.....+|.++.. .+++++|+.+|+
T Consensus 131 ~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 201 (365)
T 4eqf_A 131 NNLKALMALAVSYTNTS-----HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYL 201 (365)
T ss_dssp TCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHH
Confidence 33445555555555442 5555555555555431 23344556888887 888999999999
Q ss_pred HHHHcC----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 308 HAARQQ----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 308 ~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
++++.. ++.++..+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|++
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHL-----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHhCcCccCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 988763 57888899988876 56899999999998865 577888999999999 8999999999999
Q ss_pred HHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCHHHHHH
Q 009801 382 AANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------------WSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 382 a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------------~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
+++. +++.++.++|.+|.. .+++++|+.+|+++++..+ ...+..++.++..+|+.+.|..
T Consensus 273 al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 273 ALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8876 578889999999987 8899999999999987641 4677889999999999998888
Q ss_pred HHHHHH
Q 009801 446 LYSRMA 451 (525)
Q Consensus 446 ~~~~a~ 451 (525)
..++.+
T Consensus 349 ~~~~~l 354 (365)
T 4eqf_A 349 ANLGDL 354 (365)
T ss_dssp HHTTCC
T ss_pred HHHhhH
Confidence 776644
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-20 Score=177.20 Aligned_cols=225 Identities=15% Similarity=0.080 Sum_probs=191.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-- 313 (525)
.++++.++..+|.++...+ ++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..
T Consensus 51 ~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENE-----KDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSTT
T ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCc
Confidence 3467888999999998884 999999999999875 578899999999999 999999999999998764
Q ss_pred CHHHHHHH--------------HH-HHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 314 LYSAYNGI--------------GY-LYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLAC 376 (525)
Q Consensus 314 ~~~a~~~l--------------g~-~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~ 376 (525)
+......+ +. ++. ..+++++|+.+++++++. .++.++..+|.+|.. .+++++|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~ 192 (327)
T 3cv0_A 122 YEQLGSVNLQADVDIDDLNVQSEDFFFA-----APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL----SNNYDSAA 192 (327)
T ss_dssp TTTC--------------------CCTT-----SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHhHHHH-----HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hccHHHHH
Confidence 33333333 33 233 356999999999999876 478899999999999 99999999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 377 KYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 377 ~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.+++++++. +++.++..+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|+.+++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 193 ANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999977 578999999999998 9999999999999999864 67889999999999999999999999987
Q ss_pred c--C------------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 453 L--G------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 453 ~--~------------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
. . ++.++.+++.++.. .+++++|...++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 269 MQVGGTTPTGEASREATRSMWDFFRMLLNV----------------MNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHTTSCC-----CCTHHHHHHHHHHHHHHH----------------TTCHHHHHHHTTCCSH
T ss_pred hCCccccccccchhhcCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHH
Confidence 5 4 57899999999998 6688999999887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-20 Score=177.87 Aligned_cols=270 Identities=14% Similarity=0.091 Sum_probs=183.1
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CC
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GN 159 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~ 159 (525)
++..++.+|..++. .+++++|+..++++. .+.++.+++.+|.+|.. .+++++|+.+|+++++. ++
T Consensus 20 ~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLK-------LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKD 88 (327)
T ss_dssp GSSCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCC
Confidence 45566777776665 667777777777753 45566666666666666 66666666666666542 35
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..++..+|.++...|++++|+..|+++++. .+
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------------------------------------~~ 120 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLS------------------------------------------------QP 120 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------------------------------------ST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------CC
Confidence 566666666666666666666666555431 11
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHH-HH-HHHcCCCCCCCHHHHHHHHHHHHHcC--CH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFL-GE-IYARGAGVERNYTKALEWLTHAARQQ--LY 315 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L-g~-~y~~g~~~~~~~~~A~~~~~~a~~~~--~~ 315 (525)
.+...+..+..... .......+ +. ++.. .+++++|+.+++++++.. ++
T Consensus 121 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 121 QYEQLGSVNLQADV------------------------DIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp TTTTC--------------------------------------------CCTTS----HHHHHHHHHHHHHHHHHSTTCH
T ss_pred ccHHHHHHHhHHHH------------------------HHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCCH
Confidence 11222211110000 00011122 33 3555 678888888888887654 67
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 391 (525)
.++..+|.++.. .+++++|+.+++++++. +++.++..+|.+|.. .+++++|+.+|+++++. +++.++
T Consensus 173 ~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 173 QLHASLGVLYNL-----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 788888888876 56888888888888765 467788889999988 88999999999988876 568888
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--------------WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|...++++++.
T Consensus 244 ~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 244 YNMAVSYSN----MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHH----hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 899999987 8899999999999987653 357778999999999999999999877654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-19 Score=177.12 Aligned_cols=282 Identities=13% Similarity=0.066 Sum_probs=226.6
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CC----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhc
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~ 196 (525)
...+++.+|..+.. .+++++|+.+|+++++. ++ ..++..+|.++...|++++|+.+|+++++......
T Consensus 8 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-- 81 (406)
T 3sf4_A 8 SCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-- 81 (406)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence 45567788888887 88999999999988764 34 36788899999999999999999998876532210
Q ss_pred cCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
..+..+.++..+|.+|...+ ++++|+.+++++++.
T Consensus 82 ----------------------------------------~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 82 ----------------------------------------DQLGEAKASGNLGNTLKVLG-----NFDEAIVCCQRHLDI 116 (406)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH
T ss_pred ----------------------------------------ccHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Confidence 01223567888999998874 999999999998865
Q ss_pred ----CC----HHHHHHHHHHHHcCCCCCCC--------------------HHHHHHHHHHHHHc----C----CHHHHHH
Q 009801 277 ----GE----PQSMEFLGEIYARGAGVERN--------------------YTKALEWLTHAARQ----Q----LYSAYNG 320 (525)
Q Consensus 277 ----~~----~~a~~~Lg~~y~~g~~~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~ 320 (525)
++ +.++..+|.+|.. .++ +++|+.+++++++. + ...++..
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 192 (406)
T 3sf4_A 117 SRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGN 192 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 23 4588899999998 888 99999999998764 1 3567889
Q ss_pred HHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC-
Q 009801 321 IGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH- 387 (525)
Q Consensus 321 lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~- 387 (525)
+|.++.. .+++++|+.+++++++. ++ +.++..+|.+|.. .+++++|+.+++++++. ++
T Consensus 193 la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 193 LGNTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHH-----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCcCc
Confidence 9999986 66999999999999865 22 3388999999999 99999999999999865 22
Q ss_pred ---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 009801 388 ---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--- 453 (525)
Q Consensus 388 ---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--- 453 (525)
..++..+|.+|.. .+++++|+.+++++++.. + ..++..+|.++...|++++|+.+++++++.
T Consensus 264 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 6688899999998 999999999999998763 2 557889999999999999999999999865
Q ss_pred -C----hHHHHHHHHHHHhhhCCC
Q 009801 454 -G----YEVAQSNAAWILDKYGEG 472 (525)
Q Consensus 454 -~----~~~a~~~la~~~~~~~~~ 472 (525)
+ ...++..+|.++...|+.
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 340 VGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCcchhHHHHHHHHHHHHhhHh
Confidence 2 356888999999886654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=179.17 Aligned_cols=280 Identities=16% Similarity=0.103 Sum_probs=228.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
...++..+|..+...|++++|+.+|+++++..+.+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------------- 43 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-------------------------------------------- 43 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH--------------------------------------------
Confidence 456778888888888999999988888866421100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
...+.++..+|.+|...+ ++++|+.+++++++. + .+.++..+|.+|.. .+++++|+.++++++
T Consensus 44 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 44 KTLSAIYSQLGNAYFYLH-----DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV----LGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 001467889999998884 999999999998764 2 35688999999999 999999999999998
Q ss_pred HcC----C----HHHHHHHHHHHHhCCCCCccC--------------------HHHHHHHHHHHHhC----C----ChhH
Q 009801 311 RQQ----L----YSAYNGIGYLYVKGYGVEKKN--------------------YTKAKEYFEKAADN----E----EAGG 354 (525)
Q Consensus 311 ~~~----~----~~a~~~lg~~~~~g~~~~~~~--------------------~~~A~~~~~~a~~~----~----~~~a 354 (525)
+.. + +.++..+|.+|.. .++ +++|+.+++++++. + .+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 189 (406)
T 3sf4_A 115 DISRELNDKVGEARALYNLGNVYHA-----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH-----HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHH-----cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 752 2 5588999999986 568 99999999998764 2 2457
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---- 422 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 422 (525)
+..+|.+|.. .+++++|+.+++++++. ++ ..++.++|.+|.. .+++++|+.+++++++..
T Consensus 190 ~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 190 FGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp HHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCc
Confidence 8899999999 99999999999999865 22 3488999999998 999999999999998663
Q ss_pred C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHH
Q 009801 423 P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQC 490 (525)
Q Consensus 423 ~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (525)
+ ..++..+|.++...|++++|+.+++++++. + ...++.++|.++.. .+++++
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~ 325 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA----------------LGNHDQ 325 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------HTCHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----------------cCCHHH
Confidence 2 557789999999999999999999999865 2 26688899999988 778999
Q ss_pred HHHHHHHHHhC----C----CHHHHHHHHHHHHcccccC
Q 009801 491 AHSLWWQASEQ----G----NEHAALLIGDAYYYGRVRH 521 (525)
Q Consensus 491 A~~~~~~a~~~----~----~~~a~~~lg~~y~~g~g~~ 521 (525)
|+.+|+++++. + ...++..||.+|. ..|..
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQM-VLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH-HhhHh
Confidence 99999999864 2 2678889999987 55543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-19 Score=178.73 Aligned_cols=256 Identities=16% Similarity=0.104 Sum_probs=200.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
..+..+|..+...|++++|+.+|+++++.. ++
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------~~ 80 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG------------------------------------------------TE 80 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------CS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc------------------------------------------------cc
Confidence 456678888888888999988888887642 22
Q ss_pred C----HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 241 N----AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 241 ~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
+ ..++..+|.+|...+ ++++|+.+|+++++. ..+.++..+|.+|.. .+++++|+.+|++
T Consensus 81 ~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 151 (411)
T 4a1s_A 81 DLRTLSAIYSQLGNAYFYLG-----DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV----MGRFDEAAICCER 151 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 2 256788888887774 888888888888764 234678888888888 8889999998888
Q ss_pred HHHc--------CCHHHHHHHHHHHHhCCCCCccC-----------------HHHHHHHHHHHHhC----C----ChhHH
Q 009801 309 AARQ--------QLYSAYNGIGYLYVKGYGVEKKN-----------------YTKAKEYFEKAADN----E----EAGGH 355 (525)
Q Consensus 309 a~~~--------~~~~a~~~lg~~~~~g~~~~~~~-----------------~~~A~~~~~~a~~~----~----~~~a~ 355 (525)
+++. ....++..+|.+|.. .++ +++|+.+++++++. + .+.++
T Consensus 152 al~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 226 (411)
T 4a1s_A 152 HLTLARQLGDRLSEGRALYNLGNVYHA-----KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRAC 226 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHH-----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHH-----cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8765 135578888888876 557 88888888888754 2 34577
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---- 423 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---- 423 (525)
..+|.+|.. .+++++|+.+++++++. ++ ..++.++|.+|.. .+++++|+.+++++++..+
T Consensus 227 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 227 GNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCC
Confidence 889999998 89999999999988865 22 2378888999887 8899999999999886642
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHH
Q 009801 424 ----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCA 491 (525)
Q Consensus 424 ----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A 491 (525)
..++..+|.++...|++++|+.+++++++. + ...++.++|.++.. .+++++|
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A 362 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA----------------IGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----------------hccHHHH
Confidence 457778899999999999999999988765 1 24578888888887 6678999
Q ss_pred HHHHHHHHhCC
Q 009801 492 HSLWWQASEQG 502 (525)
Q Consensus 492 ~~~~~~a~~~~ 502 (525)
+.+|+++++..
T Consensus 363 ~~~~~~al~~~ 373 (411)
T 4a1s_A 363 LKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=169.12 Aligned_cols=236 Identities=18% Similarity=0.189 Sum_probs=201.6
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ----- 313 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----- 313 (525)
+++.++.+|.++... +++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++.+
T Consensus 2 n~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~ 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKN-----NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE----LAKYDLAQKDIETYFSKVNATKA 72 (272)
T ss_dssp ---CHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCTTTC
T ss_pred cHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhccCchhH
Confidence 456788899999888 4999999999999876 567799999999999 999999999999999843
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
...++..+|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. .++.
T Consensus 73 ~~~~~~~lg~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~ 143 (272)
T 3u4t_A 73 KSADFEYYGKILMK-----KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPTTTDPK 143 (272)
T ss_dssp CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSSCCCHH
T ss_pred HHHHHHHHHHHHHH-----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcCCCcHH
Confidence 35668999999987 56999999999999875 678899999999999 99999999999999876 6889
Q ss_pred HHHHHH-HHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC----h----
Q 009801 390 AFYQLA-KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD---VGKAFLLYSRMAELG----Y---- 455 (525)
Q Consensus 390 a~~~l~-~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~---~~~A~~~~~~a~~~~----~---- 455 (525)
+++++| .+|.. +++++|+..|+++++..| ..+++.+|.++...|+ +++|+..|+++++.. +
T Consensus 144 ~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 144 VFYELGQAYYYN-----KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 999999 77774 499999999999999875 5788899999999998 999999999998762 2
Q ss_pred --HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 456 --EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 456 --~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
..++..+|.++.. .+++++|+.+|+++++.+ ++.+.-.++.+.-
T Consensus 219 ~~~~~~~~l~~~~~~----------------~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 219 ELIEANEYIAYYYTI----------------NRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 2688889999988 778999999999998754 8889888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=177.72 Aligned_cols=253 Identities=9% Similarity=-0.029 Sum_probs=212.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHcC-
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERN-YTKALEWLTHAARQQ- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~-~~~A~~~~~~a~~~~- 313 (525)
+++++.++..+|.++... +++++|+..|+++++. ++..+++.+|.++.. .++ +++|+.+|+++++..
T Consensus 93 ~p~~~~a~~~lg~~~~~~-----g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~----~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRD-----ERSERAFKLTRDAIELNAANYTVWHFRRVLLKS----LQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp CHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCT
T ss_pred ChhhHHHHHHHHHHHHHC-----CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cccCHHHHHHHHHHHHHHCC
Confidence 445688999999999888 4999999999999876 788999999999999 886 999999999999874
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
+..+++++|.++.. .+++++|+.+|+++++. +++.+++++|.++.. .+++++|+.+|+++++. ++.
T Consensus 164 ~~~~a~~~~g~~~~~-----~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEW-----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp TCHHHHHHHHHHHHH-----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCH
Confidence 89999999999987 57999999999999876 688999999999999 99999999999999987 689
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHH-----HHHHHHHHHcCC--hHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc--ChHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMA-----TALYKLVAERGP--WSSLSRWALESYLKG--DVGKAFLLYSRMAEL--GYEV 457 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A-----~~~~~~a~~~~~--~~a~~~l~~~~~~~g--~~~~A~~~~~~a~~~--~~~~ 457 (525)
.+++++|.++.. ..+..++| +.+|+++++.+| ..+++.+|.++...| ++++|+..++++ +. +++.
T Consensus 235 ~a~~~lg~~l~~---l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~ 310 (382)
T 2h6f_A 235 SVWNQRYFVISN---TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHH---TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH
T ss_pred HHHHHHHHHHHH---hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH
Confidence 999999999987 12333566 699999999975 778999999999988 799999999887 44 5788
Q ss_pred HHHHHHHHHhhhCCCccccCCCCCCCChHh-HHHHHHHHHHH-HhCC--CHHHHHHHHHHHHccccc
Q 009801 458 AQSNAAWILDKYGEGSMCMGESGFCTDAER-HQCAHSLWWQA-SEQG--NEHAALLIGDAYYYGRVR 520 (525)
Q Consensus 458 a~~~la~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a-~~~~--~~~a~~~lg~~y~~g~g~ 520 (525)
++..+|.+|...|+.. . ...++ +++|+.+|+++ ++.+ +...+..++..+..-++.
T Consensus 311 al~~La~~~~~~~~~~-------~-~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~~~ 369 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQ-------C-DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST 369 (382)
T ss_dssp HHHHHHHHHHHHHHTT-------C-SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccc-------c-cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhcc
Confidence 9999999998732100 0 01133 69999999999 7766 577888888887754443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=163.45 Aligned_cols=192 Identities=19% Similarity=0.152 Sum_probs=158.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
|.++.+++.+|.++...+ ++++|+..|+++++. +++.+++.+|.++.. .+++++|+.+|+++++.. +
T Consensus 2 p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALG-----RYDAALTLFERALKENPQDPEALYWLARTQLK----LGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCc
Confidence 467788999999998884 999999999999875 688999999999999 999999999999998764 7
Q ss_pred HHHHHHHHHHHHhCCCCCc-----------cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEK-----------KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~-----------~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
+.++..+|.++.. . |++++|+..|+++++. +++.+++.+|.+|.. .+++++|+..|++
T Consensus 73 ~~a~~~lg~~~~~-----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 73 LGGYMVLSEAYVA-----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQ 143 (217)
T ss_dssp HHHHHHHHHHHHH-----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 8999999999987 5 7999999999999875 678999999999999 9999999999999
Q ss_pred HHHc-CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 382 AANA-GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 382 a~~~-~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
+++. +++.+++++|.++.. .+++++|+.+|+++++.+| +.++..+|.++...|++++|+.+++++-.
T Consensus 144 al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 144 ALALEDTPEIRSALAELYLS----MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9877 688999999999998 9999999999999999875 67888999999999999999999987643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=167.90 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
+++++.+|.++...|++++|+..|+++++. .+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------------------------------------~p 34 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK------------------------------------------------KY 34 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT------------------------------------------------TC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------------------------------CC
Confidence 456677777777788888887777777542 34
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.++.+++.+|.+|...+ ++++|+.+++++++.. .+.++..+|.+|.. .+++++|+.+|+++++..
T Consensus 35 ~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~ 105 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELA-----KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK----KGQDSLAIQQYQAAVDRDT 105 (272)
T ss_dssp CCSTTHHHHHHHHHHTT-----CHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCc
Confidence 56778889999998884 9999999999998842 24568999999999 999999999999998864
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH-HHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG-VMYYKGIGVKRDVKLACKYFLVAANA--GH 387 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg-~~y~~g~~~~~~~~~A~~~~~~a~~~--~~ 387 (525)
++.++..+|.++.. .+++++|+.+|+++++. .++.+++.+| .+|.. +++++|+..|+++++. .+
T Consensus 106 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYN-----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-----KEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp TCTHHHHHHHHHHHH-----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSTTC
T ss_pred ccHHHHHHHHHHHHH-----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCccc
Confidence 78899999999987 56999999999999876 5788999999 77766 4999999999999887 56
Q ss_pred HHHHHHHHHHHHcCCCCcCC---HHHHHHHHHHHHHcC---Ch-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 009801 388 QKAFYQLAKMFHTGVGLKKN---LHMATALYKLVAERG---PW-------SSLSRWALESYLKGDVGKAFLLYSRMAEL- 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~---~~~A~~~~~~a~~~~---~~-------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~- 453 (525)
..++..+|.++.. .++ +++|+..|+++++.. +. .++..+|.++...|++++|+.+|+++++.
T Consensus 176 ~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 176 YIGYLWRARANAA----QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHH----HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHH----cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7899999999886 555 888999999998763 22 57788999999999999999999999876
Q ss_pred -ChHHHHHHHHHHHh
Q 009801 454 -GYEVAQSNAAWILD 467 (525)
Q Consensus 454 -~~~~a~~~la~~~~ 467 (525)
+++.+.-.++.+..
T Consensus 252 p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 252 PTNKKAIDGLKMKLE 266 (272)
T ss_dssp TTCHHHHHHHC----
T ss_pred ccHHHHHHHhhhhhc
Confidence 56777777766554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=178.42 Aligned_cols=262 Identities=12% Similarity=0.077 Sum_probs=212.8
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~----~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~ 198 (525)
..++.+|..+.. .+++++|+.+|+++++. ++. .++..+|.+|...|++++|+.+|+++++......
T Consensus 49 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---- 120 (411)
T 4a1s_A 49 LELALEGERLCN----AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN---- 120 (411)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc----
Confidence 445667777777 78888888888888764 344 5788999999999999999999998876522110
Q ss_pred CCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--
Q 009801 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (525)
..+..+.++..+|.+|...+ ++++|+.+|+++++.
T Consensus 121 --------------------------------------~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~ 157 (411)
T 4a1s_A 121 --------------------------------------DRLGEAKSSGNLGNTLKVMG-----RFDEAAICCERHLTLAR 157 (411)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------CchHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHH
Confidence 01234678889999998884 999999999998865
Q ss_pred ------CCHHHHHHHHHHHHcCCCCCCC-----------------HHHHHHHHHHHHHc----C----CHHHHHHHHHHH
Q 009801 277 ------GEPQSMEFLGEIYARGAGVERN-----------------YTKALEWLTHAARQ----Q----LYSAYNGIGYLY 325 (525)
Q Consensus 277 ------~~~~a~~~Lg~~y~~g~~~~~~-----------------~~~A~~~~~~a~~~----~----~~~a~~~lg~~~ 325 (525)
....++..+|.+|.. .++ +++|+.+++++++. + ...++..+|.++
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 233 (411)
T 4a1s_A 158 QLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTY 233 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234688899999998 889 99999999998764 1 345889999999
Q ss_pred HhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--------CHH
Q 009801 326 VKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--------HQK 389 (525)
Q Consensus 326 ~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~ 389 (525)
.. .+++++|+.+++++++. ++ ..++..+|.+|.. .+++++|+.+|+++++.. ...
T Consensus 234 ~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 234 YL-----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HH-----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87 56999999999999865 22 3388999999999 999999999999998752 167
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
++..+|.++.. .+++++|+.+++++++.. . ..++..+|.++...|++++|+.+++++++..
T Consensus 305 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 305 SCYSLGNTYTL----LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88999999998 999999999999998763 1 4578899999999999999999999999874
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=154.67 Aligned_cols=133 Identities=22% Similarity=0.278 Sum_probs=78.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCC
Q 009801 292 GAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 292 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
|.|+.+|+++|+.+|+++++.+++.++ ||.+|..| ...++|+++|+++++.+++.++++||.+|..|.++.+|
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g-----~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ-----INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTT-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCC
T ss_pred CcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCcc
Confidence 445555566666666666665555555 66555542 23444666666666666666666666666666555666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009801 372 VKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWA 431 (525)
Q Consensus 372 ~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 431 (525)
+++|+.||++|++.+++.++++||.+|..|.|+.+|+++|+.||++|++.+++.++.+|+
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 666666666666666666666666666666666666666666666666666655555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-19 Score=161.35 Aligned_cols=190 Identities=16% Similarity=-0.029 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
.++.+++.+|.++.. .+++++|+..|+++++.. ++.+++.+|.++.. .|++++|+.+|+++++. +++
T Consensus 3 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLK-----LGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcH
Confidence 467889999999999 999999999999999864 89999999999987 67999999999999876 678
Q ss_pred hHHHHHHHHHHcCCCCc-----------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 353 GGHYNLGVMYYKGIGVK-----------RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~-----------~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
.+++.+|.++.. . +++++|+..|+++++. +++.++..+|.++.. .+++++|+.+|++++
T Consensus 74 ~a~~~lg~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 74 GGYMVLSEAYVA----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQAL 145 (217)
T ss_dssp HHHHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Confidence 899999999999 9 9999999999999987 689999999999998 999999999999998
Q ss_pred HcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHH
Q 009801 420 ERG-PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWW 496 (525)
Q Consensus 420 ~~~-~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 496 (525)
+.+ ++.+++.+|.++...|++++|+.+|+++++. +++.++.++|.++.. .+++++|+.+|+
T Consensus 146 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----------------~g~~~~A~~~~~ 209 (217)
T 2pl2_A 146 ALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL----------------KGKAEEAARAAA 209 (217)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------------------
T ss_pred hcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----------------ccCHHHHHHHHH
Confidence 775 6788999999999999999999999999886 688999999999987 778999999998
Q ss_pred HHH
Q 009801 497 QAS 499 (525)
Q Consensus 497 ~a~ 499 (525)
++-
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-20 Score=152.64 Aligned_cols=133 Identities=27% Similarity=0.360 Sum_probs=119.9
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCH
Q 009801 257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNY 336 (525)
Q Consensus 257 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 336 (525)
.++++|+++|+.||+++++.+++.++ ||.+|.. ....++|+.||+++++.+++.++++||.+|..|.++.+ |+
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~----g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~-d~ 77 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNS----QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK-DL 77 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCT----TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC-CH
T ss_pred cCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHc----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc-cH
Confidence 57788999999999999999999888 9999998 45667799999999999999999999999999988766 99
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009801 337 TKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396 (525)
Q Consensus 337 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 396 (525)
++|+.||++|++.+++.++++||.+|..|.++.+|+++|+.||++|++.+++.++.+|+.
T Consensus 78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999888765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-18 Score=160.04 Aligned_cols=216 Identities=18% Similarity=0.115 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C----
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L---- 314 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---- 314 (525)
+.++..+|.++...+ ++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+++++++.. +
T Consensus 5 a~~~~~~g~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKAR-----QFDEAIEHYNKAWELHKDITYLNNRAAAEYE----KGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSCCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccccch
Confidence 456777777777663 777777777777654 456677777777777 777777777777777642 2
Q ss_pred ---HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 315 ---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 315 ---~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+.++..+|.++.. .+++++|+.+|+++++.... +.++.. .+++++|+..+++++.. .++.
T Consensus 76 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~------~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 140 (258)
T 3uq3_A 76 KVISKSFARIGNAYHK-----LGDLKKTIEYYQKSLTEHRT------ADILTK----LRNAEKELKKAEAEAYVNPEKAE 140 (258)
T ss_dssp HHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCC------HHHHHH----HHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHhcCch------hHHHHH----HhHHHHHHHHHHHHHHcCcchHH
Confidence 5677777777765 45777777777777765432 345666 66777777777777765 3456
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
++..+|.++.. .+++++|+.+|+++++..+ +.++..+|.++...|++++|+.+++++++. .++.++.++|.+
T Consensus 141 ~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 141 EARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77777777776 7777777777777777653 556677777777777777777777777765 456777777777
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
+.. .+++++|+.+|+++++.
T Consensus 217 ~~~----------------~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 217 QIA----------------VKEYASALETLDAARTK 236 (258)
T ss_dssp HHH----------------TTCHHHHHHHHHHHHHH
T ss_pred HHH----------------HhhHHHHHHHHHHHHHh
Confidence 776 55677777777777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=159.92 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..++..+|..+...+++++|+.+|+++++. .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------------------------------~- 35 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------------------------------------H- 35 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------S-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------------------------------------h-
Confidence 467788888888888888888888887653 2
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE-------PQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~-------~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
.++.+++.+|.+|...+ ++++|+.+++++++. .+ +.++..+|.+|.. .+++++|+.+|++++
T Consensus 36 ~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKG-----EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK----LGDLKKTIEYYQKSL 106 (258)
T ss_dssp CCTHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHH
Confidence 56788999999998884 999999999999875 22 6899999999999 999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C
Q 009801 311 RQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G 386 (525)
Q Consensus 311 ~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~ 386 (525)
+.... +.++.. .+++++|+..+++++... ++.++..+|.++.. .+++++|+.+|+++++. .
T Consensus 107 ~~~~~------~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~ 171 (258)
T 3uq3_A 107 TEHRT------ADILTK-----LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPE 171 (258)
T ss_dssp HHCCC------HHHHHH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred hcCch------hHHHHH-----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcc
Confidence 87532 233433 348899999999998874 67789999999999 99999999999999987 5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
++.++..+|.++.. .+++++|+.+++++++..+ +.++..+|.++...|++++|+.+++++++..
T Consensus 172 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 172 DARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 78999999999998 9999999999999999864 6788999999999999999999999998764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-19 Score=172.60 Aligned_cols=241 Identities=11% Similarity=0.034 Sum_probs=199.3
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 158 ~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
++..++..+|.++...+++++|+..|+++++ .
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------------------------------------------------l 126 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------------------------------------L 126 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------------------------------------H
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------------------------------------h
Confidence 3567778888888888889999988888865 4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-- 313 (525)
+++++.+++.+|.++...+ .++++|+.+|++++.. +++.+++++|.++.. .+++++|+..|+++++.+
T Consensus 127 ~P~~~~a~~~~g~~l~~~g----~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~----~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQ----KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW----LRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTT
T ss_pred CccCHHHHHHHHHHHHHcc----cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcc
Confidence 6678899999999998874 2399999999999875 688999999999999 999999999999999874
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCH-HHH-----HHHHHHHHHc
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDV-KLA-----CKYFLVAANA 385 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~-~~A-----~~~~~~a~~~ 385 (525)
+..+++++|.++.. .+++++|+.+|+++++. +++.+++++|.++.. .+.. ++| +.+|+++++.
T Consensus 199 ~~~a~~~lg~~~~~-----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~----l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 199 NYHAWQHRQWVIQE-----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN----TTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp CHHHHHHHHHHHHH-----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCSCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCcchHHHHHHHHHHHHHHHHH
Confidence 89999999999987 56899999999999876 588999999999988 4443 566 6899999877
Q ss_pred --CCHHHHHHHHHHHHcCCCCcC--CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcC--------C-HHHHHHHHHHH
Q 009801 386 --GHQKAFYQLAKMFHTGVGLKK--NLHMATALYKLVAERG--PWSSLSRWALESYLKG--------D-VGKAFLLYSRM 450 (525)
Q Consensus 386 --~~~~a~~~l~~~y~~g~g~~~--~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g--------~-~~~A~~~~~~a 450 (525)
++..++++++.++.. .+ ++++|++.++++ +.+ ...++..+|.++..+| + +++|+.+|+++
T Consensus 270 ~P~~~~a~~~l~~ll~~----~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 270 VPHNESAWNYLKGILQD----RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp STTCHHHHHHHHHHHTT----TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc----cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 688999999999986 44 789999999887 555 3667889999998874 3 58999999999
Q ss_pred -HHcC--hHHHHHHHHHHHhh
Q 009801 451 -AELG--YEVAQSNAAWILDK 468 (525)
Q Consensus 451 -~~~~--~~~a~~~la~~~~~ 468 (525)
++.+ ....+..++..+..
T Consensus 345 ~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 345 AKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHH
Confidence 6664 45566677766644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=166.16 Aligned_cols=256 Identities=15% Similarity=0.103 Sum_probs=206.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
..++..|..+...|++++|+.+|+++++.. ++
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------~~ 37 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG------------------------------------------------TE 37 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------CS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC------------------------------------------------cc
Confidence 345667788888888888888888776531 22
Q ss_pred C----HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 241 N----AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--------GEPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 241 ~----~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
+ +.++..+|.+|...+ ++++|+.+++++++. ..+.++..+|.+|.. .+++++|+.++++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 108 (338)
T 3ro2_A 38 DLKTLSAIYSQLGNAYFYLH-----DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV----LGNFDEAIVCCQR 108 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH----ccCHHHHHHHHHH
Confidence 2 467788999998884 999999999998764 225688889999998 9999999999999
Q ss_pred HHHc----CC----HHHHHHHHHHHHhCCCCCccC--------------------HHHHHHHHHHHHhC----C----Ch
Q 009801 309 AARQ----QL----YSAYNGIGYLYVKGYGVEKKN--------------------YTKAKEYFEKAADN----E----EA 352 (525)
Q Consensus 309 a~~~----~~----~~a~~~lg~~~~~g~~~~~~~--------------------~~~A~~~~~~a~~~----~----~~ 352 (525)
+++. ++ ..++..+|.++.. .++ +++|+.+++++++. + .+
T Consensus 109 al~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (338)
T 3ro2_A 109 HLDISRELNDKVGEARALYNLGNVYHA-----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-----HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHH-----cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 8764 22 4588899999876 557 89999999988754 2 24
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-- 422 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 422 (525)
.++..+|.+|.. .+++++|+.+++++++. ++ ..++..+|.++.. .+++++|+.+++++++..
T Consensus 184 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 184 RAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHh
Confidence 578899999999 99999999999999865 22 3488899999997 899999999999998663
Q ss_pred --C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----Ch----HHHHHHHHHHHhhhCCCccccCCCCCCCChHhH
Q 009801 423 --P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GY----EVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (525)
Q Consensus 423 --~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~----~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (525)
+ ..++..+|.++...|++++|+.+++++++. ++ ..++..+|.++.. .+++
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~ 319 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----------------LGNH 319 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------HTCH
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----------------cCCh
Confidence 2 457789999999999999999999999865 22 4578889999988 7789
Q ss_pred HHHHHHHHHHHhCC
Q 009801 489 QCAHSLWWQASEQG 502 (525)
Q Consensus 489 ~~A~~~~~~a~~~~ 502 (525)
++|+.+|+++++..
T Consensus 320 ~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 320 DQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-18 Score=163.89 Aligned_cols=261 Identities=13% Similarity=0.066 Sum_probs=211.3
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CC----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccC
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GN----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISK 198 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~ 198 (525)
..++..|..+.. .+++++|+.+|+++++. ++ ..++..+|.++...|++++|+.+++++++......
T Consensus 6 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---- 77 (338)
T 3ro2_A 6 LELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG---- 77 (338)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc----
Confidence 456777888887 88999999999998764 44 46788999999999999999999998876532210
Q ss_pred CCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--
Q 009801 199 DSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-- 276 (525)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-- 276 (525)
..+..+.++..+|.+|...+ ++++|+.+++++++.
T Consensus 78 --------------------------------------~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 78 --------------------------------------DQLGEAKASGNLGNTLKVLG-----NFDEAIVCCQRHLDISR 114 (338)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------ccHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHHHH
Confidence 01123567888999998874 999999999998764
Q ss_pred --CC----HHHHHHHHHHHHcCCCCCCC--------------------HHHHHHHHHHHHHc----C----CHHHHHHHH
Q 009801 277 --GE----PQSMEFLGEIYARGAGVERN--------------------YTKALEWLTHAARQ----Q----LYSAYNGIG 322 (525)
Q Consensus 277 --~~----~~a~~~Lg~~y~~g~~~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~lg 322 (525)
++ ..++..+|.+|.. .++ +++|+.+++++++. + ...++..+|
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 115 ELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33 3488889999988 888 99999999988754 2 345788899
Q ss_pred HHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC---
Q 009801 323 YLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH--- 387 (525)
Q Consensus 323 ~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~--- 387 (525)
.++.. .+++++|+.+++++++. ++ +.++..+|.+|.. .+++++|+.+++++++. ++
T Consensus 191 ~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 191 NTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHH-----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 99886 66999999999999865 22 3488999999999 99999999999999865 22
Q ss_pred -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 388 -QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 -~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..++..+|.++.. .+++++|+.+++++++.. + ..++..+|.++...|++++|+.+++++++.
T Consensus 262 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 262 EAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6688899999998 999999999999998763 2 447789999999999999999999999876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=160.29 Aligned_cols=267 Identities=11% Similarity=0.045 Sum_probs=182.3
Q ss_pred hHhHHHHHHHHHHHHh--cCC-hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHH
Q 009801 105 VRVMEEATSEVESAAM--EGD-PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVK 181 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~-~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~ 181 (525)
.|++++|+.++++... |.+ .++...++..|.. .++++.|+.-++.. ...+..++..++..+...++.++|++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 4556666666655321 222 2444555666665 55666666555442 22234455555555555555555555
Q ss_pred HHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 009801 182 LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRR 261 (525)
Q Consensus 182 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~ 261 (525)
.+++++.. ...|+++.+++.+|.++...|
T Consensus 87 ~l~~ll~~----------------------------------------------~~~P~~~~~~~~la~~~~~~g----- 115 (291)
T 3mkr_A 87 ELDREMSR----------------------------------------------SVDVTNTTFLLMAASIYFYDQ----- 115 (291)
T ss_dssp HHHHHHHS----------------------------------------------CCCCSCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHhc----------------------------------------------ccCCCCHHHHHHHHHHHHHCC-----
Confidence 55544220 013678899999999998884
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 009801 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKE 341 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~ 341 (525)
++++|+.+|++ .+++.++..+|.+|.. .|++++|+..|+++++.........++..+..- ....+++++|+.
T Consensus 116 ~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKELKKMQDQDEDATLTQLATAWVSL-AAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCTTHHHHHHH
T ss_pred CHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhCchHHHHHHH
Confidence 99999999998 7888999999999998 999999999999998875333344444322110 001358999999
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHH-HHHHHH
Q 009801 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHM-ATALYK 416 (525)
Q Consensus 342 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~-A~~~~~ 416 (525)
.|+++++. +++.+++.+|.++.. .+++++|...|+++++. +++.+++++|.++.. .|+.++ +..+++
T Consensus 188 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~----~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 188 IFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH----LGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHH
Confidence 99999875 578889999999999 99999999999999876 688999999998887 666654 678999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCHHHHHH
Q 009801 417 LVAERGPWSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 417 ~a~~~~~~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
++++.+|..+... ......+.++++..
T Consensus 260 ~~~~~~P~~~~~~--d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 260 QLKDAHRSHPFIK--EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHCTTCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHH--HHHHHHHHHHHHHH
Confidence 9999987655432 22333344444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-16 Score=167.86 Aligned_cols=322 Identities=10% Similarity=0.021 Sum_probs=219.6
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH-hc----CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA-ME----GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~----~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
.+|+-.-.....++. .+++.+|+..|+++. ++ .+...+..|...... -|..+..++..+.-..
T Consensus 983 ~~PeeVs~~vKaf~~-------aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk-----aD~~Rv~eyI~kLd~~ 1050 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMT-------ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK-----ADRTRVMEYINRLDNY 1050 (1630)
T ss_pred cCHHHhHHHHHHHHh-------CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH-----hChhhHHHHHHHhhhc
Confidence 344444555566664 677889999999876 22 234455555544332 2555555555554322
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 158 ~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
. .-.+|.++...+.+++|..+|+++... ......++...+++++|+++.++.
T Consensus 1051 d----~~eIA~Iai~lglyEEAf~IYkKa~~~-----------------------~~A~~VLie~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1051 D----APDIANIAISNELFEEAFAIFRKFDVN-----------------------TSAVQVLIEHIGNLDRAYEFAERC- 1102 (1630)
T ss_pred c----HHHHHHHHHhCCCHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHhhHHHHHHHHHhc-
Confidence 2 234889999999999999999987321 111333445777888888887754
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-LYS 316 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~ 316 (525)
..+.+++.+|..+...| ++++|+..|.+| +++.++.++|.++.. .+++++|+++|..|.+.. .+.
T Consensus 1103 --n~p~vWsqLAKAql~~G-----~~kEAIdsYiKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~ 1168 (1630)
T 1xi4_A 1103 --NEPAVWSQLAKAQLQKG-----MVKEAIDSYIKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESY 1168 (1630)
T ss_pred --CCHHHHHHHHHHHHhCC-----CHHHHHHHHHhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccccc
Confidence 67899999999998884 999999999876 888999999999998 899999999999987664 333
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAK 396 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 396 (525)
+...+|..|.. .+++++ ++.| ++..+...+..+|..+.. .+++++|..+|.++ ..+..++.
T Consensus 1169 Idt~LafaYAK-----l~rlee-le~f---I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~ 1229 (1630)
T 1xi4_A 1169 VETELIFALAK-----TNRLAE-LEEF---INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLAS 1229 (1630)
T ss_pred ccHHHHHHHHh-----hcCHHH-HHHH---HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHH
Confidence 45568888876 346654 3333 344566677789999988 89999999999885 46778888
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCcccc
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCM 476 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~ 476 (525)
++.. .+++++|++.+++| ++..+|...+.++...|+++.|..+... +. .+++-...++..|..
T Consensus 1230 tLvk----Lge~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii-v~~deLeeli~yYe~-------- 1292 (1630)
T 1xi4_A 1230 TLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEELINYYQD-------- 1292 (1630)
T ss_pred HHHH----hCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh-cCHHHHHHHHHHHHH--------
Confidence 8887 78899999988887 4456666666666666666666655542 11 133344455555555
Q ss_pred CCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 477 GESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 477 ~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+.+++|+.++++++..+
T Consensus 1293 --------~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1293 --------RGYFEELITMLEAALGLE 1310 (1630)
T ss_pred --------cCCHHHHHHHHHHHhccC
Confidence 445666666666665544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=146.40 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChh
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~ 353 (525)
++.++++||.+|.. .|++++|+.+|+++++.. ++.++..+|.+|.. .+++++|+..+++++.. .++.
T Consensus 4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-----IGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCchhHH
Confidence 56788999999999 999999999999998764 88999999999987 56999999999998765 5788
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
++..+|.++.. .+++++|...++++... .+..++..+|.+|.. .+++++|+..|+++++.+| +.++++
T Consensus 75 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 75 AYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 88999999999 99999999999999876 678899999999998 8999999999999998874 678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHH
Q 009801 430 WALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAW 464 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~ 464 (525)
+|.++..+|++++|+.+|++|++.++..+.+++|.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~lal 181 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELAL 181 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHHh
Confidence 99999999999999999999999987777766653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-17 Score=163.05 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 312 (525)
.++.+|.++... +++++|+.+|+++++. + .+.+++.+|.+|.. .+++++|+.++++|++.
T Consensus 105 ~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 105 FNFFRGMYELDQ-----REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHh
Confidence 445589999888 4999999999999875 3 35789999999999 99999999999999864
Q ss_pred -C-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 313 -Q-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 313 -~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
+ .+.++..+|.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .+++++|+.+
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~ 246 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLD-----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPY 246 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 1 35688999999987 67999999999999865 22 3488999999999 9999999999
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----Ch---HHHHHHHHHHHhcCC---H
Q 009801 379 FLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----PW---SSLSRWALESYLKGD---V 440 (525)
Q Consensus 379 ~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~---~a~~~l~~~~~~~g~---~ 440 (525)
|+++++. ..+.++.++|.+|.. .+++++|+.+++++++.. ++ ..+..+|.++...|+ +
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999982 346789999999998 999999999999998763 22 234678999999999 8
Q ss_pred HHHHHHHHHHHHc-ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 441 GKAFLLYSRMAEL-GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 441 ~~A~~~~~~a~~~-~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
++|+.++++.-.. ....++.++|.+|.. .+++++|+.+|+++++.
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~----------------~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHE----------------RKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHH
Confidence 8888888877322 345578899999998 77899999999999863
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-17 Score=152.99 Aligned_cols=238 Identities=11% Similarity=0.044 Sum_probs=196.1
Q ss_pred cCCHHHHHHHHHHHHcCC--C-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhh
Q 009801 141 ERNKGKAFLYHHFAAEGG--N-IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKG 217 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~--~-~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (525)
.|++.+|+.+.++..... + .++...++..|...|++++|+..++..
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------------------------------- 60 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------------------------------- 60 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------------------------------
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-------------------------------
Confidence 578999999988765543 2 356678888888888888887654320
Q ss_pred HhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCC
Q 009801 218 ALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD----KGEPQSMEFLGEIYARGA 293 (525)
Q Consensus 218 ~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~ 293 (525)
.+....++..++..+... ++.++|++.+++.+. ++++.+++.+|.+|..
T Consensus 61 --------------------~~~~~~a~~~la~~~~~~-----~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~-- 113 (291)
T 3mkr_A 61 --------------------SAPELQAVRMFAEYLASH-----SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY-- 113 (291)
T ss_dssp --------------------SCHHHHHHHHHHHHHHCS-----TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH--
T ss_pred --------------------CChhHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH--
Confidence 122356777888888766 489999999999875 4578999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHH----HHHcCCCCc
Q 009801 294 GVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGV----MYYKGIGVK 369 (525)
Q Consensus 294 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~----~y~~g~~~~ 369 (525)
.|++++|+.+|++ .++++++..+|.++.. .|++++|++.|+++++.+.......++. ++.. .
T Consensus 114 --~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~-----~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~ 179 (291)
T 3mkr_A 114 --DQNPDAALRTLHQ---GDSLECMAMTVQILLK-----LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG----G 179 (291)
T ss_dssp --TTCHHHHHHHHTT---CCSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----T
T ss_pred --CCCHHHHHHHHhC---CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----c
Confidence 9999999999999 6789999999999987 6799999999999998754444444443 3334 5
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHH-HH
Q 009801 370 RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGK-AF 444 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~-A~ 444 (525)
+++++|+..|+++++. +++.+++.+|.++.. .+++++|+..|+++++.+| +.++.++|.++...|+..+ +.
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 8999999999999986 688999999999998 9999999999999999874 7789999999999999976 56
Q ss_pred HHHHHHHHcC
Q 009801 445 LLYSRMAELG 454 (525)
Q Consensus 445 ~~~~~a~~~~ 454 (525)
.+++++++..
T Consensus 256 ~~~~~~~~~~ 265 (291)
T 3mkr_A 256 RYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8999998774
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-18 Score=157.64 Aligned_cols=235 Identities=11% Similarity=-0.003 Sum_probs=178.2
Q ss_pred cCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchh
Q 009801 141 ERNKGKAFLYHHFAAEG------GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEE 214 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~------~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (525)
.+++++|+.+|+++++. ++..+++.+|.++...|++++|+..|+++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------------------------- 71 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-------------------------- 71 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------------------------
Confidence 67888888888888774 2467788888888888888888888887755
Q ss_pred hhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcC
Q 009801 215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARG 292 (525)
Q Consensus 215 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g 292 (525)
..+.++.++..+|.+|...+ ++++|+.+|+++++. +++.++..+|.+|..
T Consensus 72 ----------------------~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~- 123 (275)
T 1xnf_A 72 ----------------------IRPDMPEVFNYLGIYLTQAG-----NFDAAYEAFDSVLELDPTYNYAHLNRGIALYY- 123 (275)
T ss_dssp ----------------------HCCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-
T ss_pred ----------------------cCCCcHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-
Confidence 24566788888888888774 889999999988874 567888899999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHcCCCCc
Q 009801 293 AGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVK 369 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~ 369 (525)
.+++++|+.+|+++++.. +......++..+. .+++++|+.++++++... +......++.++.. .
T Consensus 124 ---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 190 (275)
T 1xnf_A 124 ---GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ------KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG----N 190 (275)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT----S
T ss_pred ---hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH------hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH----h
Confidence 889999999999988764 4545555554433 358999999998887652 22233457777777 7
Q ss_pred CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHH
Q 009801 370 RDVKLACKYFLVAANAGH------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~~~------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A 443 (525)
++.++|+..++++++... +.++..+|.+|.. .+++++|+.+|+++++.+|.. ....+.++...|++++|
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS----LGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQD 265 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhh
Confidence 788899999988876532 6788999999998 899999999999999887643 23447778888999999
Q ss_pred HHHH
Q 009801 444 FLLY 447 (525)
Q Consensus 444 ~~~~ 447 (525)
+..+
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 8877
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=144.92 Aligned_cols=170 Identities=15% Similarity=0.103 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
++..+++||.+|.. .|++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+..++++... .++.
T Consensus 4 ~~~iy~~lG~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT-----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD----IGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp CHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCchhHH
Confidence 67889999999987 77999999999999876 688999999999999 99999999999999876 6889
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
++..+|.++.. .++++.|+..+.++++..+ ..++..+|.++..+|++++|+..|+++++. .++.+++++|.+
T Consensus 75 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 75 AYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 99999999998 8999999999999998874 778899999999999999999999999986 588999999999
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGNEHAALLIGD 512 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 512 (525)
|.. .+++++|+.+|++|++.+...+.++||.
T Consensus 151 ~~~----------------~g~~~~A~~~~~~al~~~p~~a~~~lal 181 (184)
T 3vtx_A 151 YEG----------------KGLRDEAVKYFKKALEKEEKKAKYELAL 181 (184)
T ss_dssp HHH----------------TTCHHHHHHHHHHHHHTTHHHHHHCSCC
T ss_pred HHH----------------CCCHHHHHHHHHHHHhCCccCHHHHHHh
Confidence 998 7789999999999999987777776664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=154.32 Aligned_cols=237 Identities=13% Similarity=0.021 Sum_probs=191.0
Q ss_pred hhhccCCcHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009801 219 LRKSRGEDDEAFQILEYQAQK------GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYA 290 (525)
Q Consensus 219 ~~~~~~~~~~A~~~~~~~~~~------~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 290 (525)
+....+++++|++.++++++. .++.+++.+|.++...+ ++++|+.+|+++++. .++.++..+|.+|.
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG-----LRALARNDFSQALAIRPDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 445668899999999999863 56889999999999884 999999999999875 57899999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCC
Q 009801 291 RGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGI 366 (525)
Q Consensus 291 ~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~ 366 (525)
. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++.. ++.....++.. ..
T Consensus 89 ~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-- 156 (275)
T 1xnf_A 89 Q----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-- 156 (275)
T ss_dssp H----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH--
T ss_pred H----ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH--
Confidence 9 999999999999999864 78999999999987 679999999999998763 44444555444 55
Q ss_pred CCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCC
Q 009801 367 GVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSSLSRWALESYLKGD 439 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~~g~ 439 (525)
.+++++|+..+++++... +......++.++.. .++.++|+..++++++..+ ..++..+|.++...|+
T Consensus 157 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 157 --KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG----NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp --HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT----SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH----hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 789999999999988762 22233446666665 7788999999999987764 5788899999999999
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHH
Q 009801 440 VGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLW 495 (525)
Q Consensus 440 ~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 495 (525)
+++|+.+|+++++..+.. ....+.++.. .+++++|+..|
T Consensus 231 ~~~A~~~~~~al~~~p~~-~~~~~~~~~~----------------l~~~~~a~~~~ 269 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHN-FVEHRYALLE----------------LSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCCTT-CHHHHHHHHH----------------HHHHHHC----
T ss_pred HHHHHHHHHHHHhCCchh-HHHHHHHHHH----------------HHHHHhhHHHH
Confidence 999999999999874321 3344666666 77888888876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=157.59 Aligned_cols=164 Identities=15% Similarity=0.061 Sum_probs=119.7
Q ss_pred HHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc
Q 009801 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----G----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (525)
Q Consensus 126 a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~ 197 (525)
.++.+|.++.. .+++++|+.+|++|++. + ...+++.+|.+|...|++++|+.+++++++..+...
T Consensus 105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--- 177 (383)
T 3ulq_A 105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--- 177 (383)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS---
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc---
Confidence 34558999988 89999999999999874 3 347899999999999999999999999987643321
Q ss_pred CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-
Q 009801 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK- 276 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~- 276 (525)
+ ..+..+.++..+|.+|...+ ++++|+.+|+++++.
T Consensus 178 ---------------------------~-----------~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 178 ---------------------------A-----------YNIRLLQCHSLFATNFLDLK-----QYEDAISHFQKAYSMA 214 (383)
T ss_dssp ---------------------------T-----------THHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHH
T ss_pred ---------------------------c-----------chHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Confidence 0 01123567888999998874 899999999998864
Q ss_pred ---CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 009801 277 ---GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--------QLYSAYNGIGYLYVKGYGVEKKNYTKAKE 341 (525)
Q Consensus 277 ---~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~~~~~A~~ 341 (525)
++ +.++.++|.+|.. .+++++|+.+|+++++. ..+.++.++|.+|.. .|++++|+.
T Consensus 215 ~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~ 285 (383)
T 3ulq_A 215 EAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK-----LGKIDKAHE 285 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH-----CCCHHHHHH
Confidence 22 2477778888887 78888888888887762 234455666666654 346666666
Q ss_pred HHHHHHh
Q 009801 342 YFEKAAD 348 (525)
Q Consensus 342 ~~~~a~~ 348 (525)
+++++++
T Consensus 286 ~~~~al~ 292 (383)
T 3ulq_A 286 YHSKGMA 292 (383)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=161.46 Aligned_cols=203 Identities=19% Similarity=0.181 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCH
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNY-TKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNY 336 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~-~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 336 (525)
..++++..+++.... .++.+++.+|.+|.. .+++ ++|+.+|+++++.. ++.++..+|.+|.. .+++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~ 153 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-----KGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----cCCH
Confidence 456666677665543 567888888888888 8888 88888888887764 68888888888876 5688
Q ss_pred HHHHHHHHHHHhCC-ChhHHHHHHHHHHcCCCCc---------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 009801 337 TKAKEYFEKAADNE-EAGGHYNLGVMYYKGIGVK---------RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGL 404 (525)
Q Consensus 337 ~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~---------~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~ 404 (525)
++|+.+|+++++.+ ++.++..+|.+|.. . +++++|+.+|+++++. +++.+++++|.+|..
T Consensus 154 ~~A~~~~~~al~~~p~~~~~~~lg~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 225 (474)
T 4abn_A 154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQ----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS---- 225 (474)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTT----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHH----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence 88888888888763 46778888888888 7 8888899888888876 578888888888876
Q ss_pred c--------CCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 405 K--------KNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 405 ~--------~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
. +++++|+.+|+++++.++ +.+++++|.++...|++++|+.+|+++++. +++.++.+++.++..
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~- 304 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF- 304 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 5 889999999999988754 567888999999999999999999998876 577888889988887
Q ss_pred CCCccccCCCCCCCChHhHHHHHHHHHH
Q 009801 470 GEGSMCMGESGFCTDAERHQCAHSLWWQ 497 (525)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 497 (525)
.+++++|+..+.+
T Consensus 305 ---------------lg~~~eAi~~~~~ 317 (474)
T 4abn_A 305 ---------------LSRLTSLLESKGK 317 (474)
T ss_dssp ---------------HHHHHHHHHHTTT
T ss_pred ---------------HHHHHHHHHHhcc
Confidence 7788888876653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-15 Score=162.07 Aligned_cols=356 Identities=11% Similarity=0.019 Sum_probs=268.6
Q ss_pred ccCCCCCCCccccCCC-CCC----CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC
Q 009801 65 ENLDPGSWSPVFEPSI-DPG----AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMM 139 (525)
Q Consensus 65 ~~~~~~~a~~~~~~~~-~~~----~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g 139 (525)
..+.|..++.+++++. ++. |......+.+..+. -|..+...+..+.-+.. .-.+|.++..
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk--------aD~~Rv~eyI~kLd~~d----~~eIA~Iai~--- 1061 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK--------ADRTRVMEYINRLDNYD----APDIANIAIS--- 1061 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH--------hChhhHHHHHHHhhhcc----HHHHHHHHHh---
Confidence 4466778888888873 222 23344444443332 13344444444432111 2338898888
Q ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 140 RERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 140 ~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
.+.+++|...|+++-. +..| +..++...+++++|+++++++.. ...+.+++..
T Consensus 1062 -lglyEEAf~IYkKa~~--~~~A---~~VLie~i~nldrAiE~Aervn~---------------------p~vWsqLAKA 1114 (1630)
T 1xi4_A 1062 -NELFEEAFAIFRKFDV--NTSA---VQVLIEHIGNLDRAYEFAERCNE---------------------PAVWSQLAKA 1114 (1630)
T ss_pred -CCCHHHHHHHHHHcCC--HHHH---HHHHHHHHhhHHHHHHHHHhcCC---------------------HHHHHHHHHH
Confidence 8999999999999842 2222 33445578899999999887622 2446789999
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG-EPQSMEFLGEIYARGAGVERN 298 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~~~~~~ 298 (525)
+...|++++|+..|.++ ++++++..+|.++.+.+ ++++|+++|++|.+.. .+.+-..+|..|.+ .++
T Consensus 1115 ql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lG-----kyEEAIeyL~mArk~~~e~~Idt~LafaYAK----l~r 1182 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSG-----NWEELVKYLQMARKKARESYVETELIFALAK----TNR 1182 (1630)
T ss_pred HHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcccccccHHHHHHHHh----hcC
Confidence 99999999999999775 89999999999998884 9999999999998764 33455679999998 777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 299 YTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 299 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
+++ ++.| +...+...+..+|..++. .+++++|+.+|.++ ..+..+|.+|.. .+++++|+..
T Consensus 1183 lee-le~f---I~~~n~ad~~~iGd~le~-----eg~YeeA~~~Y~kA------~ny~rLA~tLvk----Lge~q~AIEa 1243 (1630)
T 1xi4_A 1183 LAE-LEEF---INGPNNAHIQQVGDRCYD-----EKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDG 1243 (1630)
T ss_pred HHH-HHHH---HhCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHhh------hHHHHHHHHHHH----hCCHHHHHHH
Confidence 774 3333 455577788899999987 67999999999996 588999999999 9999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hH
Q 009801 379 FLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELG--YE 456 (525)
Q Consensus 379 ~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~ 456 (525)
+++| ++..+|...+.++.. .+++..|..+... +. .+++.+..++..|...|.+++|+.++++++..+ +.
T Consensus 1244 arKA---~n~~aWkev~~acve----~~Ef~LA~~cgl~-Ii-v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1244 ARKA---NSTRTWKEVCFACVD----GKEFRLAQMCGLH-IV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHh---CCHHHHHHHHHHHhh----hhHHHHHHHHHHh-hh-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 9988 678899999998887 8899999988763 22 345566688888999999999999999999875 34
Q ss_pred HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHc
Q 009801 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ-------GNEHAALLIGDAYYY 516 (525)
Q Consensus 457 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~y~~ 516 (525)
..+..+|.+|.+| .+++..+++++|...+.. .+.+.+..+..+|..
T Consensus 1315 gmftELaiLyaKy--------------~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1315 GMFTELAILYSKF--------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred HHHHHHHHHHHhC--------------CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence 4555689888774 277899999999977654 245667777777763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-17 Score=163.09 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=179.3
Q ss_pred cHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCH-HHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHH
Q 009801 226 DDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDR-TKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYT 300 (525)
Q Consensus 226 ~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~-~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~ 300 (525)
.+++++.+++... +.++.+++.+|.++... +++ ++|+.+|+++++. +++.+++.||.+|.. .++++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-----g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~ 154 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-----PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK----KGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Confidence 4556666665443 36899999999999877 499 9999999999875 678999999999999 99999
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCc---------cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCC
Q 009801 301 KALEWLTHAARQQ-LYSAYNGIGYLYVKGYGVEK---------KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 301 ~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~---------~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~ 368 (525)
+|+.+|+++++.. +..++..+|.++.. . +++++|+.+|+++++. +++.+++.+|.+|..
T Consensus 155 ~A~~~~~~al~~~p~~~~~~~lg~~~~~-----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 225 (474)
T 4abn_A 155 SAHTCFSGALTHCKNKVSLQNLSMVLRQ-----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS---- 225 (474)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTT-----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHH-----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence 9999999999874 67899999999976 5 7999999999999876 678999999999998
Q ss_pred c--------CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 009801 369 K--------RDVKLACKYFLVAANA-----GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE 433 (525)
Q Consensus 369 ~--------~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 433 (525)
. +++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++.+| ..++..++.+
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7 9999999999999975 578999999999998 9999999999999999875 6778999999
Q ss_pred HHhcCCHHHHHHHHHHH
Q 009801 434 SYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a 450 (525)
+...|++++|+..+.+.
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999877655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-16 Score=152.47 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=183.7
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----G----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 312 (525)
.++.+|..+... +++++|+.+|++|++. + .+.+++.+|.+|.. .+++++|+.++++|++.
T Consensus 103 ~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 103 SLFFRGMYEFDQ-----KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----MKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHh
Confidence 567789998887 4999999999999875 2 35789999999999 99999999999999864
Q ss_pred -C-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 313 -Q-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKY 378 (525)
Q Consensus 313 -~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~ 378 (525)
+ .+.++.++|.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .+++++|+.+
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~ 244 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDD-----FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEH 244 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 1 25678899999987 67999999999999874 22 4578899999999 9999999999
Q ss_pred HHHHHH-----c--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C---hHHHHHHHHHHHhcCC---HH
Q 009801 379 FLVAAN-----A--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P---WSSLSRWALESYLKGD---VG 441 (525)
Q Consensus 379 ~~~a~~-----~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~---~~a~~~l~~~~~~~g~---~~ 441 (525)
|+++++ . ..+.++.++|.++.. .+++++|+.+++++++.. + ......++.++...++ +.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~ 320 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIH 320 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999987 3 347789999999998 999999999999999863 1 2345577888888888 88
Q ss_pred HHHHHHHHHHHc-ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 442 KAFLLYSRMAEL-GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 442 ~A~~~~~~a~~~-~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
+|+.++++.... ........+|.+|.. .+++++|+.+|+++++.
T Consensus 321 ~al~~~~~~~~~~~~~~~~~~la~~y~~----------------~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 321 DLLSYFEKKNLHAYIEACARSAAAVFES----------------SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHHH
Confidence 888888874322 345577789999998 77899999999999864
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=146.43 Aligned_cols=205 Identities=21% Similarity=0.214 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYS 316 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 316 (525)
.+.+++.+|..+... +++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +..
T Consensus 22 ~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 92 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEF-----GDYEKAAEAFTKAIEENKEDAIPYINFANLLSS----VNELERALAFYDKALELDSSAAT 92 (243)
T ss_dssp -------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchH
Confidence 467788899998777 4999999999999875 578899999999998 999999999999998764 788
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFY 392 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 392 (525)
++..+|.++.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+++++++. .++.++.
T Consensus 93 ~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 163 (243)
T 2q7f_A 93 AYYGAGNVYVV-----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARF 163 (243)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHH
Confidence 99999999986 56999999999999866 478889999999999 99999999999999877 5788999
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 393 QLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 393 ~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
.+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|+.+++++++. +++.++..++.+..
T Consensus 164 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 164 QFGMCLAN----EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHH----HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 99999987 8999999999999998864 678889999999999999999999999876 46777777665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=146.65 Aligned_cols=205 Identities=18% Similarity=0.103 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChh
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAG 353 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~ 353 (525)
.+.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++++. .++.
T Consensus 22 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~ 92 (243)
T 2q7f_A 22 ASMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS-----VNELERALAFYDKALELDSSAAT 92 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCcchH
Confidence 35678889999998 999999999999998764 78999999999987 56999999999999876 5788
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~ 429 (525)
++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++.. ...++..
T Consensus 93 ~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 164 (243)
T 2q7f_A 93 AYYGAGNVYVV----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQ 164 (243)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHH
Confidence 99999999999 99999999999999987 578999999999998 999999999999999886 4778889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHH
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEH 505 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 505 (525)
+|.++...|++++|+.+++++++. .++.++..+|.++.. .+++++|+.+|+++++.. ++.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----------------~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY----------------KENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----------------ccCHHHHHHHHHHHHccCcchHH
Confidence 999999999999999999999886 578899999999988 667899999999998864 788
Q ss_pred HHHHHHHHHH
Q 009801 506 AALLIGDAYY 515 (525)
Q Consensus 506 a~~~lg~~y~ 515 (525)
++..++.+..
T Consensus 229 ~~~~~~~l~~ 238 (243)
T 2q7f_A 229 ALHAKKLLGH 238 (243)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHHHHh
Confidence 8888776653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-15 Score=139.31 Aligned_cols=191 Identities=19% Similarity=0.149 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSA 317 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 317 (525)
+.+++.+|.++...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +..+
T Consensus 37 ~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRG-----NTEQAKVPLRKALEIDPSSADAHAALAVVFQT----EMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp HHHHHHHHHHHHHTT-----CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHH
Confidence 778999999998884 999999999999875 578999999999999 999999999999998864 7889
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHh--C--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAAD--N--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAF 391 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~ 391 (525)
+..+|.++.. .+++++|+.+++++++ . .++.++..+|.+|.. .+++++|+.+|+++++. .++.++
T Consensus 108 ~~~la~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (252)
T 2ho1_A 108 LNNYGGFLYE-----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVA 178 (252)
T ss_dssp HHHHHHHHHH-----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHH-----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999987 5699999999999988 3 456788999999999 99999999999999987 578999
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
..+|.++.. .+++++|+.+++++++.. ...++..++.++...|++++|..+++++++..
T Consensus 179 ~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 179 LEMADLLYK----EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998 999999999999999886 46778899999999999999999999998874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-14 Score=148.61 Aligned_cols=367 Identities=8% Similarity=-0.058 Sum_probs=248.1
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
.+|.+..++..++.. .. .+++++|...|+++. .|.++..+..++.++.. .+++++|...|++++..
T Consensus 8 ~~P~~~~~w~~l~~~-~~-------~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~----~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQ-------NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK----AKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HCTTCHHHHHHHHHH-HH-------SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTT
T ss_pred hCCCCHHHHHHHHHH-HH-------hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Confidence 356677777777763 32 567999999999986 57899999999999988 88999999999999875
Q ss_pred -CCHHHHHHHHH-HHhccccHHHHHH----HHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhh---------c
Q 009801 158 -GNIQSKMAVAY-TYLRQDMHDKAVK----LYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRK---------S 222 (525)
Q Consensus 158 -~~~~a~~~la~-~y~~~~~~~~A~~----~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 222 (525)
.+.+.+..++. +....+++++|.+ .|++++....... .. ...+.....+.. .
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~----~~---------~~~w~~~~~~~~~~~~~~~~~~ 142 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI----MS---------YQIWVDYINFLKGVEAVGSYAE 142 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST----TC---------HHHHHHHHHHHHHSCCCSSTTH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc----cc---------HHHHHHHHHHHhcCCCcccHHH
Confidence 36677777764 3345577776665 6666654311000 00 000011111111 1
Q ss_pred cCCcHHHHHHHHHHHHc-CC------------------------------------------------------------
Q 009801 223 RGEDDEAFQILEYQAQK-GN------------------------------------------------------------ 241 (525)
Q Consensus 223 ~~~~~~A~~~~~~~~~~-~~------------------------------------------------------------ 241 (525)
.+++++|...|++++.. ..
T Consensus 143 ~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 143 NQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 23444444444444321 00
Q ss_pred -------HHHHHHHHHHHHhcCCCCccC----HHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCC---CCCCHH-----
Q 009801 242 -------AGAMYKIGLFYYFGLRGLRRD----RTKALMWFSKAADK--GEPQSMEFLGEIYARGAG---VERNYT----- 300 (525)
Q Consensus 242 -------~~a~~~Lg~~y~~~~~~~~~~----~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~---~~~~~~----- 300 (525)
...+......-.... ...++ ..+++..|++++.. .++.+++.+|.++..... ..|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~-~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNP-LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCS-SCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCC-ccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 011111111100000 00012 24778889998874 788999999999874100 035665
Q ss_pred --HHHHHHHHHHH-c--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--Ch-hHHHHHHHHHHcCCCCcCCH
Q 009801 301 --KALEWLTHAAR-Q--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EA-GGHYNLGVMYYKGIGVKRDV 372 (525)
Q Consensus 301 --~A~~~~~~a~~-~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~-~a~~~lg~~y~~g~~~~~~~ 372 (525)
+|+..|++|++ . .+...+..++.++.. .+++++|...|+++++.. ++ .++..++.++.. .++.
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~ 372 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEES-----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGI 372 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCH
Confidence 89999999986 3 478899999999876 569999999999999874 33 478899999988 8999
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHH-HHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 373 KLACKYFLVAANAG--HQKAFYQLAKM-FHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 373 ~~A~~~~~~a~~~~--~~~a~~~l~~~-y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
++|...|++|++.. ....+...+.+ +.. .++.++|...|+++++..| +..+..++..+...|+.++|+.+|
T Consensus 373 ~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~----~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 373 KSGRMIFKKAREDARTRHHVYVTAALMEYYC----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 99999999999863 33444444444 333 7899999999999998854 677888899899999999999999
Q ss_pred HHHHHcC--hH----HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 448 SRMAELG--YE----VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 448 ~~a~~~~--~~----~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
++++... ++ ..+.....+... .++.+.+...++++++.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~----------------~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESN----------------IGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHH----------------SSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHH
Confidence 9999863 22 255555666555 34677888888888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-15 Score=139.38 Aligned_cols=197 Identities=17% Similarity=0.049 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGG 354 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a 354 (525)
+.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++++. .++.+
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT-----EMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCcCcHHH
Confidence 5778999999999 999999999999998764 78999999999987 56999999999999876 57889
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAAN--A--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+..+|.+|.. .+++++|+.+|+++++ . .+..++..+|.++.. .+++++|+.+++++++..+ ..++.
T Consensus 108 ~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (252)
T 2ho1_A 108 LNNYGGFLYE----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVAL 179 (252)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHH----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 9999999999 9999999999999988 3 467889999999998 9999999999999998864 77889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NE 504 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 504 (525)
.+|.++...|++++|+.+++++++. .+..++..++.++.. .+++++|+.+++++++.. ++
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV----------------FEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----------------ccCHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999999999876 578889999999988 678999999999998865 45
Q ss_pred HHHH
Q 009801 505 HAAL 508 (525)
Q Consensus 505 ~a~~ 508 (525)
.+..
T Consensus 244 ~~~~ 247 (252)
T 2ho1_A 244 EYQE 247 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-16 Score=152.21 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=117.7
Q ss_pred HHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc
Q 009801 126 ARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----G----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (525)
Q Consensus 126 a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~ 197 (525)
.++.+|..+.. .+++++|+.+|++|... + ...+++.+|.+|...+++++|+.+++++++..+....
T Consensus 103 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-- 176 (378)
T 3q15_A 103 SLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-- 176 (378)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT--
T ss_pred HHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC--
Confidence 56778998888 89999999999999864 2 3578899999999999999999999999876433110
Q ss_pred CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-
Q 009801 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK- 276 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~- 276 (525)
+ .+..+.++..+|.+|...+ ++++|+.+|+++++.
T Consensus 177 ----------------------------~-----------~~~~~~~~~~lg~~y~~~~-----~~~~A~~~~~~al~~~ 212 (378)
T 3q15_A 177 ----------------------------Y-----------SIRTIQSLFVIAGNYDDFK-----HYDKALPHLEAALELA 212 (378)
T ss_dssp ----------------------------C-----------HHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHH
T ss_pred ----------------------------c-----------hhhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
Confidence 0 1123567888999988774 899999999988864
Q ss_pred ---CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 277 ---GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ-----Q--LYSAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 277 ---~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
++ +.++.+||.+|.. .+++++|+.+|+++++. . .+.++..+|.++.. .|++++|+.+
T Consensus 213 ~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~ 283 (378)
T 3q15_A 213 MDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK-----AGQTQKAFQF 283 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-----CCCHHHHHHH
Confidence 22 3567777777777 77777777777777652 1 24455555555554 3455555555
Q ss_pred HHHHHh
Q 009801 343 FEKAAD 348 (525)
Q Consensus 343 ~~~a~~ 348 (525)
++++++
T Consensus 284 ~~~al~ 289 (378)
T 3q15_A 284 IEEGLD 289 (378)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-15 Score=132.17 Aligned_cols=199 Identities=19% Similarity=0.130 Sum_probs=172.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
+.++.+++.+|.++...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +
T Consensus 5 ~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQ-----DYRQATASIEDALKSDPKNELAWLVRAEIYQY----LKVNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp CHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCC
Confidence 456788999999998884 999999999999875 578899999999999 999999999999998764 7
Q ss_pred HHHHHHHHHHHHhCCCCCc-cCHHHHHHHHHHHHh--C--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC
Q 009801 315 YSAYNGIGYLYVKGYGVEK-KNYTKAKEYFEKAAD--N--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH 387 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~-~~~~~A~~~~~~a~~--~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~ 387 (525)
..++..+|.++.. . +++++|+.+++++++ . .++.+++.+|.++.. .+++++|+.+++++++. .+
T Consensus 76 ~~~~~~l~~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 76 AEINNNYGWFLCG-----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp HHHHHHHHHHHHT-----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Confidence 8899999999986 6 799999999999998 2 236788999999999 99999999999999877 57
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQ 459 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~ 459 (525)
+.++..+|.++.. .+++++|+.+++++++..+ ..++..++.++...|+.++|..+++.+.+. +++.+.
T Consensus 147 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 147 PPAFKELARTKML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8899999999998 9999999999999987744 567778888889999999999999988755 344443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.5e-15 Score=133.44 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=145.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CC
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ---QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE 351 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~ 351 (525)
.++.+++.+|.++.. .+++++|+.+|+++++. .+..+++.+|.++.. .+++++|+.+|+++++. ++
T Consensus 5 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 5 TDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-----IKKYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCSH
T ss_pred cCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-----hhcHHHHHHHHHHHHHhCcch
Confidence 456778888888888 88888888888888764 356777788888876 56888888888888866 35
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH-------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ-------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
+.+++.+|.+|.. .+++++|+.+|+++++. +++ .++..+|.++.. .+++++|+.+|+++++.+
T Consensus 76 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~ 147 (228)
T 4i17_A 76 ANAYIGKSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVT 147 (228)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcC
Confidence 6778888888888 88888888888888876 344 557888888887 888888888888888887
Q ss_pred Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHH
Q 009801 423 PW----SSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQA 498 (525)
Q Consensus 423 ~~----~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 498 (525)
|. .+++.+|.+++..|+ ..++++...+........+..... .+.+++|+.+|+++
T Consensus 148 p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~~~~A~~~~~~a 206 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKYASEKAKA----------------DAAFKKAVDYLGEA 206 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHHHHH----------------HHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Confidence 65 567788888765543 344555554322222222222222 56788999999999
Q ss_pred HhCC--CHHHHHHHHHHH
Q 009801 499 SEQG--NEHAALLIGDAY 514 (525)
Q Consensus 499 ~~~~--~~~a~~~lg~~y 514 (525)
++.. ++++...|+.+.
T Consensus 207 ~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 207 VTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHH
Confidence 8754 778887777764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-14 Score=145.59 Aligned_cols=338 Identities=11% Similarity=-0.013 Sum_probs=243.9
Q ss_pred HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhc
Q 009801 119 AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196 (525)
Q Consensus 119 ~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~ 196 (525)
.+|.+..++..++.. .. .+++++|...|++++.. .+...+..++.++...+++++|...|++++...|.
T Consensus 8 ~~P~~~~~w~~l~~~-~~----~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~---- 78 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQ----NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH---- 78 (530)
T ss_dssp HCTTCHHHHHHHHHH-HH----SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC----
T ss_pred hCCCCHHHHHHHHHH-HH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----
Confidence 478899999999985 54 67999999999999874 68999999999999999999999999999764221
Q ss_pred cCCCCCchhhhhcccchhhhh-HhhhccCCcHHHHH----HHHHHHHc-----CCHHHHHHHHHHHHhcCC----CCccC
Q 009801 197 SKDSPVIEPIRIHNGAEENKG-ALRKSRGEDDEAFQ----ILEYQAQK-----GNAGAMYKIGLFYYFGLR----GLRRD 262 (525)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~----~~~~~~~~-----~~~~a~~~Lg~~y~~~~~----~~~~~ 262 (525)
...+.... .+....+++++|.+ .|+++... .+...+...+.+...... ...++
T Consensus 79 -------------~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 79 -------------IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp -------------HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred -------------hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 01122222 22334566666654 77776542 456777777776644100 01258
Q ss_pred HHHHHHHHHHHHhcCC-H--HHHHHHHH--------------------------HHHc------CCC-----C-------
Q 009801 263 RTKALMWFSKAADKGE-P--QSMEFLGE--------------------------IYAR------GAG-----V------- 295 (525)
Q Consensus 263 ~~~A~~~~~~a~~~~~-~--~a~~~Lg~--------------------------~y~~------g~~-----~------- 295 (525)
+++|..+|+++++... . ..+..... +|.. +.. +
T Consensus 146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 8899999999887421 1 11111100 0000 000 0
Q ss_pred ---------------------CCC----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCC--CCccCHH-------HH
Q 009801 296 ---------------------ERN----YTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYG--VEKKNYT-------KA 339 (525)
Q Consensus 296 ---------------------~~~----~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~--~~~~~~~-------~A 339 (525)
.++ ..+++..|++++.. .++.++..+|.++..... ...|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 011 23677889998875 489999999999863000 0024655 99
Q ss_pred HHHHHHHHh-C--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 340 KEYFEKAAD-N--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQ-KAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 340 ~~~~~~a~~-~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~-~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
+..|++|++ . +++..+..+|.++.. .+++++|...|+++++.. ++ .++..++.++.. .+++++|..
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~ 377 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRM 377 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHH
Confidence 999999996 3 578899999999999 999999999999999874 33 578888888876 889999999
Q ss_pred HHHHHHHcCCh--HHHHHHHHH-HHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhH
Q 009801 414 LYKLVAERGPW--SSLSRWALE-SYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (525)
Q Consensus 414 ~~~~a~~~~~~--~a~~~l~~~-~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (525)
.|++|++..+. ..+...+.+ +...|++++|+..|+++++. +++.++.+++.++.. .++.
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~----------------~g~~ 441 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----------------LNED 441 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----------------TTCH
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----------------CCCH
Confidence 99999988653 344444444 34699999999999999976 578899999988876 5678
Q ss_pred HHHHHHHHHHHhCC
Q 009801 489 QCAHSLWWQASEQG 502 (525)
Q Consensus 489 ~~A~~~~~~a~~~~ 502 (525)
++|+.+|++++...
T Consensus 442 ~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 442 NNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHhcc
Confidence 99999999999864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-16 Score=164.71 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=140.6
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CC
Q 009801 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE 351 (525)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~ 351 (525)
++++.++.+||.+|.. .|++++|+.+|++|++.. ++.++++||.+|.. .|++++|+.+|++|++. ++
T Consensus 6 P~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-----~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 6 PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-----QGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC
Confidence 3567888999999998 899999999999998764 78899999999987 56899999999998866 57
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+.++++||.+|.. .+++++|+..|+++++. +++.+++++|.+|.. .+++++|+.+|++|++.+| ..++
T Consensus 77 ~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~ 148 (723)
T 4gyw_A 77 ADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAY 148 (723)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Confidence 8899999999999 99999999999999877 678899999999987 8999999999999998874 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.++|.++...|++++|++.++++++.
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 89999999999999999999998865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-16 Score=163.92 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
++++++++||.+|.. .|++++|+.+|++|++. +++.++++||.+|.. .+++++|+..|+++++. +++
T Consensus 7 ~~a~al~nLG~~~~~-----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~----~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 7 THADSLNNLANIKRE-----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Confidence 368899999999987 67999999999999876 689999999999999 99999999999999987 689
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.+++++|.++.. .+++++|+++|++|++.++ ..+++++|.++..+|++++|+.+|++|++. +++.++.++|.
T Consensus 78 ~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 78 DAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 999999999998 9999999999999999974 789999999999999999999999999987 68999999999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
++.. .+++++|+..|+++++
T Consensus 154 ~l~~----------------~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQI----------------VCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHH----------------TTCCTTHHHHHHHHHH
T ss_pred HHHh----------------cccHHHHHHHHHHHHH
Confidence 9998 5567778888887765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-15 Score=133.28 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=166.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.+.+|.+++.+|.++...+ ++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++++..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAK-----NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN----IKKYKEAADYFDIAIKKNY 73 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCc
Confidence 4567899999999998884 999999999999875 467888999999999 999999999999999875
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh-------hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA-------GGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 383 (525)
++.++..+|.+|.. .+++++|+.+|+++++. +++ .+++.+|.++.. .+++++|+.+|++++
T Consensus 74 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al 144 (228)
T 4i17_A 74 NLANAYIGKSAAYRD-----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHAT 144 (228)
T ss_dssp SHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHH
Confidence 68899999999987 57999999999999876 445 568999999999 999999999999999
Q ss_pred HcC----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHH
Q 009801 384 NAG----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEV 457 (525)
Q Consensus 384 ~~~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~ 457 (525)
+.+ ++.++.++|.+|.. .+...++++....+.......+......+.+++|+.+|+++++. +++.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFYN---------NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcCCCcccHHHHHHHHHHHHH---------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 874 45889999999864 34555677777664444444555566778899999999999887 5677
Q ss_pred HHHHHHHHH
Q 009801 458 AQSNAAWIL 466 (525)
Q Consensus 458 a~~~la~~~ 466 (525)
+...++.+.
T Consensus 216 ~~~~l~~i~ 224 (228)
T 4i17_A 216 IKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-14 Score=130.43 Aligned_cols=201 Identities=17% Similarity=0.080 Sum_probs=174.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
+++.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++++. .++
T Consensus 6 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMR----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQY-----LKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCh
Confidence 456788999999999 999999999999998864 78999999999987 56999999999999875 578
Q ss_pred hHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 353 GGHYNLGVMYYKGIGVK-RDVKLACKYFLVAAN--A--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~--~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
.++..+|.+|.. . +++++|+.+++++++ . .+..++..+|.++.. .+++++|+.+++++++..+ ..
T Consensus 77 ~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 148 (225)
T 2vq2_A 77 EINNNYGWFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPP 148 (225)
T ss_dssp HHHHHHHHHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCch
Confidence 899999999999 9 999999999999998 3 347889999999998 9999999999999998864 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC-
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAEL---GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ- 501 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 501 (525)
++..+|.++...|++++|+.+++++++. .++.++..++.++.. .+++++|..+++.+.+.
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA----------------LGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999875 567788778888777 66789999999988754
Q ss_pred -CCHHHHHHH
Q 009801 502 -GNEHAALLI 510 (525)
Q Consensus 502 -~~~~a~~~l 510 (525)
+++.+...+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 356555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.7e-16 Score=146.90 Aligned_cols=237 Identities=15% Similarity=0.120 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
+..++..+|.++...|++++|+.+|+++++........ ..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------------------------------------~~ 65 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH----------------------------------------DH 65 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS----------------------------------------SS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC----------------------------------------CC
Confidence 45788899999999999999999999887643221000 01
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc------C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK------G----EPQSMEFLGEIYARGAGVERNYTKALEWLTH 308 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~------~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~ 308 (525)
+..+.++..+|.+|...+ ++++|+.+|+++++. + ...++..+|.+|.. .+++++|+.+|++
T Consensus 66 ~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 136 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQN-----KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKR 136 (311)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHHH
Confidence 234678899999998884 999999999999864 1 24688999999999 9999999999999
Q ss_pred HHHc------C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC------C----ChhHHHHHHHHHHcCCCC
Q 009801 309 AARQ------Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------E----EAGGHYNLGVMYYKGIGV 368 (525)
Q Consensus 309 a~~~------~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~------~----~~~a~~~lg~~y~~g~~~ 368 (525)
+++. + ...++..+|.++.. .+++++|+.+++++++. + .+.++..+|.+|..
T Consensus 137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---- 207 (311)
T 3nf1_A 137 ALEIREKVLGKDHPDVAKQLNNLALLCQN-----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK---- 207 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----
Confidence 9875 1 45678999999986 56999999999999875 1 24578899999999
Q ss_pred cCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCC--CCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 009801 369 KRDVKLACKYFLVAANAG-----------HQKAFYQLAKMFHTGV--GLKKNLHMATALYKLVAERGP--WSSLSRWALE 433 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~--g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 433 (525)
.+++++|+.+++++++.. ....+..++.....+. ...+.+.+|+.+++++....+ ..++..+|.+
T Consensus 208 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 208 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 999999999999998641 1112233333333211 135677778888888887664 5678899999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 009801 434 SYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 434 ~~~~g~~~~A~~~~~~a~~~ 453 (525)
+...|++++|+.+|+++++.
T Consensus 288 ~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 288 YRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=149.12 Aligned_cols=239 Identities=11% Similarity=0.074 Sum_probs=167.2
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----------GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVN 192 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----------~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~ 192 (525)
.+.++..+|.+|.. .+++++|+.+|+++++. ....++..+|.+|...|++++|+.+|+++++....
T Consensus 26 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556666666666 66777777777776652 23567888899999999999999999888764321
Q ss_pred hhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 009801 193 SFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSK 272 (525)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~ 272 (525)
.... ..+..+.++..+|.+|... +++++|+.+|++
T Consensus 102 ~~~~----------------------------------------~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 136 (311)
T 3nf1_A 102 TLGK----------------------------------------DHPAVAATLNNLAVLYGKR-----GKYKEAEPLCKR 136 (311)
T ss_dssp HHCT----------------------------------------TCHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHH
T ss_pred HhCC----------------------------------------CChHHHHHHHHHHHHHHHc-----CcHHHHHHHHHH
Confidence 1000 0122356788999999877 499999999999
Q ss_pred HHhc----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--------C--CHHHHHHHHHHHHhCCCCC
Q 009801 273 AADK----------GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--------Q--LYSAYNGIGYLYVKGYGVE 332 (525)
Q Consensus 273 a~~~----------~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~g~~~~ 332 (525)
+++. ....++..+|.+|.. .+++++|+.+|+++++. . ...++..+|.++..
T Consensus 137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----- 207 (311)
T 3nf1_A 137 ALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----- 207 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-----
Confidence 8864 134678899999998 99999999999999875 2 35678899999987
Q ss_pred ccCHHHHHHHHHHHHhC-----------CChhHHHHHHHHHHcCC--CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 009801 333 KKNYTKAKEYFEKAADN-----------EEAGGHYNLGVMYYKGI--GVKRDVKLACKYFLVAANA--GHQKAFYQLAKM 397 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~-----------~~~~a~~~lg~~y~~g~--~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~ 397 (525)
.+++++|+.+++++++. .....+..++.++..+. .....+.+|..+++++... ..+.++..+|.+
T Consensus 208 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 208 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 67999999999999863 12334444444444321 1256666777788877754 457788999999
Q ss_pred HHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 398 FHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 398 y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
|.. .+++++|+.+|+++++..+
T Consensus 288 ~~~----~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 288 YRR----QGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHH----HTCHHHHHHHHHHHHHHHC
T ss_pred HHH----CCCHHHHHHHHHHHHHHhh
Confidence 998 9999999999999987643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-13 Score=133.98 Aligned_cols=261 Identities=9% Similarity=-0.029 Sum_probs=202.0
Q ss_pred HHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC---CCH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhcc
Q 009801 125 HARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG---GNI----QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLIS 197 (525)
Q Consensus 125 ~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~---~~~----~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~ 197 (525)
++...+|.++.. .+++++|+.++++++.. ++. .++..+|.++...|++++|+..+++++...+....
T Consensus 15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 88 (373)
T 1hz4_A 15 EFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-- 88 (373)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc--
Confidence 455677777777 78999999999998764 232 36788999999999999999999998775433100
Q ss_pred CCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-
Q 009801 198 KDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK- 276 (525)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~- 276 (525)
......++..+|.++...| ++++|+.+++++++.
T Consensus 89 ----------------------------------------~~~~~~~~~~la~~~~~~G-----~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 89 ----------------------------------------WHYALWSLIQQSEILFAQG-----FLQTAWETQEKAFQLI 123 (373)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHH
Confidence 0011356788999998884 999999999998864
Q ss_pred ---C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCccCHHHHH
Q 009801 277 ---G------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTKAK 340 (525)
Q Consensus 277 ---~------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~~A~ 340 (525)
+ ...++..+|.++.. .|++++|+.+++++++.. ...++..+|.++.. .|++++|+
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~ 194 (373)
T 1hz4_A 124 NEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-----RGDLDNAR 194 (373)
T ss_dssp HHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-----HTCHHHHH
T ss_pred HHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-----cCCHHHHH
Confidence 1 23567789999998 999999999999998753 24678889999986 67999999
Q ss_pred HHHHHHHhC----CChhHHH-----HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCc
Q 009801 341 EYFEKAADN----EEAGGHY-----NLGVMYYKGIGVKRDVKLACKYFLVAANAGH------QKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 341 ~~~~~a~~~----~~~~a~~-----~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~y~~g~g~~ 405 (525)
.++++++.. +.+..+. .++.++.. .+++++|..+++++.+... ..++..++.++.. .
T Consensus 195 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~ 266 (373)
T 1hz4_A 195 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----L 266 (373)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH----c
Confidence 999998754 2222221 34455778 8999999999999876532 3356788888987 8
Q ss_pred CCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 406 KNLHMATALYKLVAERG--------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~--------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++++|+..++++++.. ...++..+|.++...|++++|..++++++..
T Consensus 267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999997652 1246778899999999999999999999876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-13 Score=136.15 Aligned_cols=260 Identities=12% Similarity=-0.064 Sum_probs=197.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 161 QSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 161 ~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
.+...+|.++...|++++|+.++++++...+.. + ...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------~------------~~~ 51 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPG-------------------------------W------------FYS 51 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------------------------C------------HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-------------------------------c------------hhH
Confidence 345666777777888888888877775421100 0 000
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
...++..+|.++...+ ++++|+.++++++.. +++ .++..+|.++.. .|++++|+.+++++++.
T Consensus 52 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKG-----ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 1246788999998774 999999999999864 333 457889999999 99999999999999864
Q ss_pred C----------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-------ChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 313 Q----------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-------EAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 313 ~----------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
. ...++..+|.++.. .|++++|..+++++++.. ...++..+|.++.. .+++++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 193 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWA-----WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNA 193 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHH
T ss_pred HHHhccccCcHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHH
Confidence 2 24567889999876 579999999999998652 23578899999999 9999999
Q ss_pred HHHHHHHHHc----CC-HHHHH----HHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCH
Q 009801 376 CKYFLVAANA----GH-QKAFY----QLAKMFHTGVGLKKNLHMATALYKLVAERGP------WSSLSRWALESYLKGDV 440 (525)
Q Consensus 376 ~~~~~~a~~~----~~-~~a~~----~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~l~~~~~~~g~~ 440 (525)
..+++++.+. +. ..... ..+.++.. .+++++|..++++++...+ ...+..++.++...|++
T Consensus 194 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 269 (373)
T 1hz4_A 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 269 (373)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCH
Confidence 9999999865 22 11111 23344665 8999999999999987653 22567889999999999
Q ss_pred HHHHHHHHHHHHc----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 441 GKAFLLYSRMAEL----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 441 ~~A~~~~~~a~~~----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
++|...++++++. + ...++..+|.++.. .+++++|..+++++++.
T Consensus 270 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 270 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ----------------AGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHH
Confidence 9999999999764 2 22477888999888 67889999999998863
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-15 Score=140.06 Aligned_cols=210 Identities=14% Similarity=0.044 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhCCCCCc
Q 009801 262 DRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEK 333 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~ 333 (525)
++++|+.+|+++ |.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-----G 90 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----T
T ss_pred cHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-----C
Confidence 589999999888 556777 88999999999999875 22 5688999999987 5
Q ss_pred cCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHHc----CC----HHHHHHHHH
Q 009801 334 KNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVK-RDVKLACKYFLVAANA----GH----QKAFYQLAK 396 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~----~~----~~a~~~l~~ 396 (525)
|++++|+.+|++|++. ++ +.++.++|.+|.. . +++++|+.+|++|++. ++ ..++.++|.
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 6999999999999865 33 4578899999998 8 9999999999999976 22 467889999
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcCC--h-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcChH--H-----HHH
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERGP--W-------SSLSRWALESYLKGDVGKAFLLYSRMAELGYE--V-----AQS 460 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~~--~-------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~-----a~~ 460 (525)
++.. .+++++|+.+|+++++..+ . .++.++|.++..+|++++|+.+|+++++..+. . .+.
T Consensus 167 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 167 LKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (292)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 9998 9999999999999998753 1 15788999999999999999999999876322 1 234
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
.++..+.. ++ .+++++|+..|+++++.+ +...+.++-...
T Consensus 243 ~l~~~~~~-~~-------------~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 243 SLIDAVNE-GD-------------SEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHT-TC-------------TTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CC-------------HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 45555532 11 567999999999887766 344555554444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=136.69 Aligned_cols=197 Identities=13% Similarity=0.060 Sum_probs=158.6
Q ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCC
Q 009801 225 EDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~ 296 (525)
++++|+..|+++ |.+|... +++++|+.+|+++++. ++ +.++.++|.+|.. .
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLR-----KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS----G 90 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHT-----TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred cHHHHHHHHHHH------------HHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----C
Confidence 488999888876 5567666 4999999999999875 33 4688999999999 9
Q ss_pred CCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhCCCCCc-cCHHHHHHHHHHHHhC----CC----hhHHHHHH
Q 009801 297 RNYTKALEWLTHAARQ----QL----YSAYNGIGYLYVKGYGVEK-KNYTKAKEYFEKAADN----EE----AGGHYNLG 359 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg 359 (525)
+++++|+.+|++|++. ++ +.++.++|.+|.. . +++++|+.+|++|++. ++ +.++.++|
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN-----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999999999875 33 4688999999986 4 6999999999999875 22 45788999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHcC--CH-------HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH-----
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANAG--HQ-------KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS----- 425 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~-------~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----- 425 (525)
.+|.. .+++++|+.+|+++++.. +. .++.++|.++.. .+++++|+.+|+++++..|..
T Consensus 166 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 166 DLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC---------
T ss_pred HHHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 99999 999999999999999862 21 267889999998 899999999999999876532
Q ss_pred --HHHHHHHHHH--hcCCHHHHHHHHHHHHHcCh
Q 009801 426 --SLSRWALESY--LKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 426 --a~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~ 455 (525)
....++..+. ..+++++|+..|++++..++
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 2334555443 45689999999999887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-13 Score=128.00 Aligned_cols=211 Identities=11% Similarity=0.048 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC--CCccCH-------HHHHHHHHHHHh-c--CCHHHHHHHHHHHHcC
Q 009801 227 DEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLR--GLRRDR-------TKALMWFSKAAD-K--GEPQSMEFLGEIYARG 292 (525)
Q Consensus 227 ~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~--~~~~~~-------~~A~~~~~~a~~-~--~~~~a~~~Lg~~y~~g 292 (525)
++|+..|++++. |.++++++.+|.++...+. ...+++ ++|+..|++|++ . +++.++..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~- 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence 678888888754 5888899999888864310 012453 888888888887 3 567788888888888
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--CHH-HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHH-HcCC
Q 009801 293 AGVERNYTKALEWLTHAARQQ--LYS-AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMY-YKGI 366 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~~--~~~-a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y-~~g~ 366 (525)
.+++++|+..|+++++.. ++. ++..+|.++.. .+++++|+..|+++++.. +...+...+.+. ..
T Consensus 112 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-- 181 (308)
T 2ond_A 112 ---RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-- 181 (308)
T ss_dssp ---TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT--
T ss_pred ---cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--
Confidence 888888888888888764 454 78888888765 568888888888888763 444555555443 23
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---C---ChHHHHHHHHHHHhcC
Q 009801 367 GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER---G---PWSSLSRWALESYLKG 438 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~l~~~~~~~g 438 (525)
.+++++|...|+++++. +++.++..++.++.. .+++++|+..|+++++. . ....+..++......|
T Consensus 182 --~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 182 --SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp --SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred --cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 57888888888888765 677888888888876 78888888888888885 2 2346667777788888
Q ss_pred CHHHHHHHHHHHHHcC
Q 009801 439 DVGKAFLLYSRMAELG 454 (525)
Q Consensus 439 ~~~~A~~~~~~a~~~~ 454 (525)
+.++|...++++++..
T Consensus 256 ~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 256 DLASILKVEKRRFTAF 271 (308)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 8888888888888763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=134.08 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=161.2
Q ss_pred hccCCcHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----------CCHH
Q 009801 221 KSRGEDDEAFQILEYQAQ----------KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----------GEPQ 280 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~----------~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~ 280 (525)
...+++++|+.+++++.+ +..+.++..+|.+|...+ ++++|+.+|+++++. ..+.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-----KYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 356777788888887754 235778999999999884 999999999999865 2356
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN- 349 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~- 349 (525)
++..+|.+|.. .+++++|+.+|+++++. ....++..+|.++.. .+++++|+.+++++++.
T Consensus 87 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 87 TLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-----QGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Confidence 88999999999 99999999999999875 146788999999987 67999999999999876
Q ss_pred -------C--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCC--CcCC
Q 009801 350 -------E--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----------GHQKAFYQLAKMFHTGVG--LKKN 407 (525)
Q Consensus 350 -------~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----------~~~~a~~~l~~~y~~g~g--~~~~ 407 (525)
. .+.++..+|.+|.. .+++++|+.+++++++. .....+..++..+..+.- ....
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 1 24578899999999 99999999999999864 123355556666554211 2233
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 408 LHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 408 ~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.++..+++...... ...++..+|.++...|++++|+.+++++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555554433322 2457889999999999999999999999864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-12 Score=125.51 Aligned_cols=194 Identities=10% Similarity=0.018 Sum_probs=132.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHc--------CCC--CCCCHHHHHHHHHHHHH-c--CCHHHHHHHHHHHHhCCC
Q 009801 266 ALMWFSKAAD--KGEPQSMEFLGEIYAR--------GAG--VERNYTKALEWLTHAAR-Q--QLYSAYNGIGYLYVKGYG 330 (525)
Q Consensus 266 A~~~~~~a~~--~~~~~a~~~Lg~~y~~--------g~~--~~~~~~~A~~~~~~a~~-~--~~~~a~~~lg~~~~~g~~ 330 (525)
|+..|++++. ++++.+|+.+|.++.. |.. ..++.++|+..|++|++ . ++..++..+|.++..
T Consensus 35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~--- 111 (308)
T 2ond_A 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES--- 111 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh---
Confidence 5566666665 4777888888877652 210 01235788888888877 3 366778888887765
Q ss_pred CCccCHHHHHHHHHHHHhCC--Chh-HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCc
Q 009801 331 VEKKNYTKAKEYFEKAADNE--EAG-GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 331 ~~~~~~~~A~~~~~~a~~~~--~~~-a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~ 405 (525)
.+++++|...|+++++.. ++. ++..+|.++.. .+++++|...|+++++.. +...+...+.+... ..
T Consensus 112 --~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~ 182 (308)
T 2ond_A 112 --RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY---CS 182 (308)
T ss_dssp --TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TS
T ss_pred --cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---Hc
Confidence 457888888888888763 454 78888888887 788888888888888763 34444444444221 14
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------ChHHHHHHHHHHHhhhCC
Q 009801 406 KNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL------GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~------~~~~a~~~la~~~~~~~~ 471 (525)
+++++|+..|+++++.. .+.++..++..+...|++++|+..|+++++. .....+..++.++...|+
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 78888888888887764 3567777777788888888888888888873 234566666777666555
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=144.38 Aligned_cols=284 Identities=13% Similarity=0.028 Sum_probs=113.0
Q ss_pred hHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 009801 105 VRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYA 184 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~ 184 (525)
.+++++|..++++. +++.++..||..+.. .+++++|++.|.++ +++.++..++..+...|++++|+.+++
T Consensus 16 ~~~ld~A~~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 16 IGNLDRAYEFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45566666666665 334566667776666 66677777777654 455566666666666677777777666
Q ss_pred HHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHH
Q 009801 185 ELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRT 264 (525)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~ 264 (525)
.+.+..+. ..+...+...+.+.|++.++.++++. .+..++..+|..+... ++++
T Consensus 86 ~ark~~~~-----------------~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~-----g~ye 139 (449)
T 1b89_A 86 MARKKARE-----------------SYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDE-----KMYD 139 (449)
T ss_dssp ----------------------------------------CHHHHTTTTTC----C---------------------CTT
T ss_pred HHHHhCcc-----------------chhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHc-----CCHH
Confidence 55442111 01122344455566666666655532 3345777777777666 3777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 009801 265 KALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (525)
Q Consensus 265 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~ 344 (525)
+|..+|.++ ..+..||.++.. .+++++|++.++++ +++.++..++..+.. .++++.|..+..
T Consensus 140 eA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~-----~~ef~lA~~~~l 201 (449)
T 1b89_A 140 AAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVD-----GKEFRLAQMCGL 201 (449)
T ss_dssp THHHHHHHT------TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHH-----TTCHHHHHHTTT
T ss_pred HHHHHHHHh------hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHH-----cCcHHHHHHHHH
Confidence 777777766 356677777777 77777777777777 467777776666655 457777755554
Q ss_pred HHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 345 KAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 345 ~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
..+ .+|+-...+..+|.. .+.+++|+.++++++.. .+...+..||.+|..- ..++..++++.|...+...
T Consensus 202 ~L~--~~ad~l~~lv~~Yek----~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~~~~ini~ 273 (449)
T 1b89_A 202 HIV--VHADELEELINYYQD----RGYFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIP 273 (449)
T ss_dssp TTT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHSTTSCHH
T ss_pred HHH--hCHhhHHHHHHHHHH----CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCc
Confidence 322 355555567777777 77888888888877755 4666777777777541 2345555555555443332
Q ss_pred C-------hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 423 P-------WSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 423 ~-------~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
+ ...+..+..+|..-++++.|+...-+.
T Consensus 274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 2 344556777777788888777665444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=123.74 Aligned_cols=161 Identities=12% Similarity=0.052 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHH----------------HHHHHHhCCCCCccCHHHH
Q 009801 278 EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNG----------------IGYLYVKGYGVEKKNYTKA 339 (525)
Q Consensus 278 ~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~----------------lg~~~~~g~~~~~~~~~~A 339 (525)
++..++..|..+.. .+++++|+.+|+++++.. ++.+++. +|.+|.. .+++++|
T Consensus 3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A 73 (208)
T 3urz_A 3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-----NRNYDKA 73 (208)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH-----TTCHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH-----CCCHHHH
Confidence 45667788888888 888888888888888764 5566666 4444444 3445555
Q ss_pred HHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 340 KEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALY 415 (525)
Q Consensus 340 ~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~ 415 (525)
+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++++|.+|..- ...+.+.+...+
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--~~~~~~~~~~~~ 147 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT--AEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--hHHHHHHHHHHH
Confidence 5555554433 344444455555544 45555555555544443 3444444454444320 011223334444
Q ss_pred HHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 416 KLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 416 ~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++++...+ ..+++.+|..+...|++++|+.+|++|++.
T Consensus 148 ~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp C---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44332222 123344444444444455555555544444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.6e-14 Score=130.00 Aligned_cols=150 Identities=14% Similarity=0.174 Sum_probs=108.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
.++.++.+++.+|..+...+ ++++|+..|+++++. ++ +.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQG-----KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQ 80 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTT-----CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHH
Confidence 45678999999999999884 999999999999986 45 7899999999999 9999999999999998
Q ss_pred cC-----CHHHHHHHHHHHHhC---CCCCccCHHHHHHHHHHHHhC--CChhHH-----------------HHHHHHHHc
Q 009801 312 QQ-----LYSAYNGIGYLYVKG---YGVEKKNYTKAKEYFEKAADN--EEAGGH-----------------YNLGVMYYK 364 (525)
Q Consensus 312 ~~-----~~~a~~~lg~~~~~g---~~~~~~~~~~A~~~~~~a~~~--~~~~a~-----------------~~lg~~y~~ 364 (525)
.. .+.+++.+|.++... .....+++++|+.+|+++++. +++.+. +.+|.+|..
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 62 367899999998641 011146999999999999875 344444 444555555
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHH
Q 009801 365 GIGVKRDVKLACKYFLVAANA--G---HQKAFYQLAKMFH 399 (525)
Q Consensus 365 g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~l~~~y~ 399 (525)
.+++++|+..|+++++. + .+.+++++|.+|.
T Consensus 161 ----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 161 ----RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred ----ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 45555555555554443 1 2334444444444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=131.38 Aligned_cols=211 Identities=18% Similarity=0.166 Sum_probs=163.1
Q ss_pred CCccCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------C----CHHH
Q 009801 258 GLRRDRTKALMWFSKAADK-------G---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ------Q----LYSA 317 (525)
Q Consensus 258 ~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~----~~~a 317 (525)
...+++++|+.+|+++++. + .+.++..+|.+|.. .+++++|+.+|+++++. + ...+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAAT 87 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 4568899999999999873 2 35688999999999 99999999999999865 2 4568
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----------CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----------EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-- 385 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 385 (525)
+..+|.++.. .+++++|+.+|+++++. ..+.++.++|.+|.. .+++++|+.+|+++++.
T Consensus 88 ~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 88 LNNLAVLYGK-----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence 8999999987 77999999999999865 235678899999999 99999999999999876
Q ss_pred ------C--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCC------H
Q 009801 386 ------G--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----------PWSSLSRWALESYLKGD------V 440 (525)
Q Consensus 386 ------~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~l~~~~~~~g~------~ 440 (525)
. ...++..+|.++.. .+++++|+.+++++++.. ....+..++......+. +
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----
T ss_pred HhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH
Confidence 2 25678899999998 899999999999998752 13355566665555443 3
Q ss_pred HHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 441 GKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 441 ~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.++..+++..... ....++.++|.++.. .+++++|+.+|+++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 235 GEYGSWYKACKVDSPTVNTTLRSLGALYRR----------------QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp --------CCCCCCHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHh
Confidence 3343333333222 356688999999988 77899999999999864
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=123.13 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHH----------------HHHHHHcCCCCCCCHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEF----------------LGEIYARGAGVERNYTKA 302 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~----------------Lg~~y~~g~~~~~~~~~A 302 (525)
.++.++..|..+. ..+++++|+.+|+++++. +++.+++. +|.+|.. .+++++|
T Consensus 3 ~~~~~~~~g~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A 73 (208)
T 3urz_A 3 SVDEMLQKVSAAI-----EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK----NRNYDKA 73 (208)
T ss_dssp CHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH----CCCHHHH
Confidence 5677888888873 568999999999999986 56788999 9999999 9999999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcC--CHHHHH
Q 009801 303 LEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR--DVKLAC 376 (525)
Q Consensus 303 ~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~--~~~~A~ 376 (525)
+.+|+++++.. ++.+++.+|.++.. .|++++|+.+|+++++. +++.+++++|.+|.. .+ +...+.
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~~~~~ 144 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVC-----RGQEKDALRMYEKILQLEADNLAANIFLGNYYYL----TAEQEKKKLE 144 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----HhHHHHHHHH
Confidence 99999999864 89999999999987 67999999999999876 688999999999876 43 456677
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh
Q 009801 377 KYFLVAANAGH-QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW 424 (525)
Q Consensus 377 ~~~~~a~~~~~-~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 424 (525)
..|+++..... ..+++++|..+.. .+++++|+.+|+++++..|.
T Consensus 145 ~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 145 TDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCC
Confidence 88888765533 3467888988887 89999999999999999874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=141.37 Aligned_cols=298 Identities=12% Similarity=0.085 Sum_probs=147.5
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
.++.++|.+++++. +++.++..||..+...+++++|++.|.++-.. ......+...
T Consensus 16 ~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfika~D~---------------------~~y~~V~~~a 71 (449)
T 1b89_A 16 IGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP---------------------SSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH---------------------HHHHHHHHHH
Confidence 56789999999998 56679999999999999999999999875211 1233445566
Q ss_pred hccCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCH
Q 009801 221 KSRGEDDEAFQILEYQAQK-GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~-~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
...|++++|+++++.+.+. .++.....|+.+|.+. +++.++..+++. .+..++..+|..+.. .|.+
T Consensus 72 e~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Kl-----g~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~y 138 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKKARESYVETELIFALAKT-----NRLAELEEFING----PNNAHIQQVGDRCYD----EKMY 138 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTC----C--------------------CT
T ss_pred HhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHh-----CCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCH
Confidence 7789999999999887654 4567788899999877 499998888853 455699999999999 9999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 300 TKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 300 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
++|..+|.++ +.+..|+.++.. .|++++|++.++++ +++.+|..+..++.. .++++.|....
T Consensus 139 eeA~~~Y~~a------~n~~~LA~~L~~-----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~----~~ef~lA~~~~ 200 (449)
T 1b89_A 139 DAAKLLYNNV------SNFGRLASTLVH-----LGEYQAAVDGARKA---NSTRTWKEVCFACVD----GKEFRLAQMCG 200 (449)
T ss_dssp TTHHHHHHHT------TCHHHHHHHHHT-----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHH----TTCHHHHHHTT
T ss_pred HHHHHHHHHh------hhHHHHHHHHHH-----hccHHHHHHHHHHc---CCchhHHHHHHHHHH----cCcHHHHHHHH
Confidence 9999999987 467889999987 67999999999999 589999999999999 99999997766
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc--
Q 009801 380 LVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESY--LKGDVGKAFLLYSRMAEL-- 453 (525)
Q Consensus 380 ~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~--~~g~~~~A~~~~~~a~~~-- 453 (525)
.. +. .+++-...+..+|.. .|.+++|+.++++++..+ +...+..+|.++. ..++..+.++.|...+..
T Consensus 201 l~-L~-~~ad~l~~lv~~Yek----~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 201 LH-IV-VHADELEELINYYQD----RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TT-TT-TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HH-HH-hCHhhHHHHHHHHHH----CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 54 22 566666778888998 999999999999999886 4566777776554 345777777777544322
Q ss_pred -----ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH--------------hCCCHHHHHHHHHHH
Q 009801 454 -----GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS--------------EQGNEHAALLIGDAY 514 (525)
Q Consensus 454 -----~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--------------~~~~~~a~~~lg~~y 514 (525)
.+...|..+..+|.++ ++++.|+....+.. ...+.+.+|+....|
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~----------------~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fy 338 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKY----------------EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 338 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHT----------------TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------------chHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHH
Confidence 3456788899999884 45666766554432 345788888888877
Q ss_pred H
Q 009801 515 Y 515 (525)
Q Consensus 515 ~ 515 (525)
.
T Consensus 339 l 339 (449)
T 1b89_A 339 L 339 (449)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=122.29 Aligned_cols=187 Identities=18% Similarity=0.109 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--- 385 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 385 (525)
++..++.+|..+.. .+++++|+..|+++++. ++ +.+++.+|.+|.. .+++++|+..|+++++.
T Consensus 14 ~~~~~~~~a~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 14 SPQEAFERAMEFYN-----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp SHHHHHHHHHHHHH-----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHCCC
Confidence 44455555555544 33555555555555543 22 4455555555555 55555555555555544
Q ss_pred --CCHHHHHHHHHHHHcCC----CCcCCHHHHHHHHHHHHHcCC--h---HH--------------HHHHHHHHHhcCCH
Q 009801 386 --GHQKAFYQLAKMFHTGV----GLKKNLHMATALYKLVAERGP--W---SS--------------LSRWALESYLKGDV 440 (525)
Q Consensus 386 --~~~~a~~~l~~~y~~g~----g~~~~~~~A~~~~~~a~~~~~--~---~a--------------~~~l~~~~~~~g~~ 440 (525)
..+.+++.+|.++.... -..+++++|+.+|+++++..| . .+ ++.+|.++...|++
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 12345555555554200 014566666666666666543 1 12 38899999999999
Q ss_pred HHHHHHHHHHHHc--C---hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--C---HHHHHHH
Q 009801 441 GKAFLLYSRMAEL--G---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--N---EHAALLI 510 (525)
Q Consensus 441 ~~A~~~~~~a~~~--~---~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~l 510 (525)
++|+..|+++++. + .+.+++++|.+|...|+..... ...+++++|+..|+++++.. + ..+...|
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~------~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 238 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA------RQPERYRRAVELYERLLQIFPDSPLLRTAEELY 238 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh------cccchHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9999999999976 2 5679999999998743321100 01389999999999999854 3 4566677
Q ss_pred HHHHH
Q 009801 511 GDAYY 515 (525)
Q Consensus 511 g~~y~ 515 (525)
+.++.
T Consensus 239 ~~~~~ 243 (261)
T 3qky_A 239 TRARQ 243 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-14 Score=118.82 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=107.1
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLA 395 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~ 395 (525)
.||.++.. ++++++|+..+++++.. .++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|
T Consensus 2 ~LG~~~~~-----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRS-----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE----AKEYDLAKKYICTYINVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCC-----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHH-----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35666654 66888888888888876 356677888999988 88999999999988876 6788889999
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHH-HHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 396 KMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLL-YSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 396 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~-~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
.+|.. .+++++|+.+|+++++.+| +.+++++|.++...|++++|... +++|++. +++.++...+.++...
T Consensus 73 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 73 LLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 99887 8889999999999988874 67888889888888888776654 5888775 5777887788777653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=146.39 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=136.8
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHH--------c--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAA--------E--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~--------~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~ 189 (525)
+++++.+.+..| .. .+++++|++.|++++ . .++..+++.+|.++...|++++|+..|+++++
T Consensus 390 ~p~~~~a~~~~a---~~----~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~- 461 (681)
T 2pzi_A 390 DPTDVAASVLQA---TV----LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE- 461 (681)
T ss_dssp CTTSTTHHHHHH---TT----TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred CCCCcchHHhhc---cc----ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-
Confidence 567777777777 22 678899999999888 3 35778888888888888888888888888765
Q ss_pred HHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 009801 190 AVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMW 269 (525)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~ 269 (525)
.+++++.+++.+|.+|...+ ++++|+..
T Consensus 462 -----------------------------------------------~~p~~~~a~~~lg~~~~~~g-----~~~~A~~~ 489 (681)
T 2pzi_A 462 -----------------------------------------------RVGWRWRLVWYRAVAELLTG-----DYDSATKH 489 (681)
T ss_dssp -----------------------------------------------HHCCCHHHHHHHHHHHHHHT-----CHHHHHHH
T ss_pred -----------------------------------------------cCcchHHHHHHHHHHHHHcC-----CHHHHHHH
Confidence 45677888888888888774 88888888
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 009801 270 FSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEK 345 (525)
Q Consensus 270 ~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~ 345 (525)
|+++++. +++.+++++|.+|.. .+++++ +.+|+++++.+ ++.+++++|.++.. .|++++|+.+|++
T Consensus 490 ~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 490 FTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-----EGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHT
T ss_pred HHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-----cCCHHHHHHHHHh
Confidence 8888765 677888888888888 888888 88888887753 77788888888876 5688888888888
Q ss_pred HHhC--CChhHHHHHHHHHHc
Q 009801 346 AADN--EEAGGHYNLGVMYYK 364 (525)
Q Consensus 346 a~~~--~~~~a~~~lg~~y~~ 364 (525)
+++. +++.+++++|.++..
T Consensus 560 al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 560 VPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp SCTTSTTHHHHHHHHHHHTC-
T ss_pred hcccCcccHHHHHHHHHHHHc
Confidence 8765 456777788888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.5e-14 Score=147.45 Aligned_cols=176 Identities=12% Similarity=-0.014 Sum_probs=153.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--------h--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA--------D--KGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~--------~--~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
+++++.+.+..| ... +++++|+..|++++ + .+++.+++.+|.+|.. .+++++|+..|+
T Consensus 390 ~p~~~~a~~~~a---~~~-----~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~ 457 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVL-----SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD----LGDVAKATRKLD 457 (681)
T ss_dssp CTTSTTHHHHHH---TTT-----CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH----HTCHHHHHHHHH
T ss_pred CCCCcchHHhhc---ccc-----cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh----cCCHHHHHHHHH
Confidence 456777777766 222 59999999999999 4 3678999999999999 999999999999
Q ss_pred HHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 308 HAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAA 383 (525)
Q Consensus 308 ~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 383 (525)
++++. +++.+++++|.++.. .+++++|+..|+++++. +++.+++++|.+|.. .+++++ +.+|++++
T Consensus 458 ~al~~~p~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 458 DLAERVGWRWRLVWYRAVAELL-----TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVW 527 (681)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHH
Confidence 99875 589999999999987 67999999999999876 689999999999999 999999 99999999
Q ss_pred Hc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCC
Q 009801 384 NA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD 439 (525)
Q Consensus 384 ~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~ 439 (525)
+. ++..+++++|.++.. .+++++|+.+|+++++.++ ..+++++|.++...++
T Consensus 528 ~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 528 STNDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 87 689999999999998 9999999999999999986 5788899998877665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=113.18 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGH 355 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 355 (525)
..+..+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++. .++.++
T Consensus 9 ~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~ 79 (186)
T 3as5_A 9 VYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-----TGAVDRGTELLERSLADAPDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344555555555 55555555555555443 245555555555544 33555555555555443 344455
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWA 431 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 431 (525)
..+|.++.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+++++++..+ ..++..+|
T Consensus 80 ~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 80 TVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 555555555 55555555555555543 344455555555554 5555555555555554432 34444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009801 432 LESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.++...|++++|+.+++++++
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=113.96 Aligned_cols=159 Identities=17% Similarity=0.151 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSA 317 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 317 (525)
..+++.+|.++ ...+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+++++++. .++.+
T Consensus 8 ~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 78 (186)
T 3as5_A 8 QVYYRDKGISH-----AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK----TGAVDRGTELLERSLADAPDNVKV 78 (186)
T ss_dssp HHHHHHHHHHH-----HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHH-----HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHH
Confidence 56788888887 4568999999999999875 678999999999999 99999999999999886 47899
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ 393 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 393 (525)
+..+|.++.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+++++++. .++.++..
T Consensus 79 ~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 79 ATVLGLTYVQ-----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp HHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHH-----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 9999999987 56999999999999876 578899999999999 99999999999999987 57899999
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
+|.++.. .+++++|+.+++++++..
T Consensus 150 la~~~~~----~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 150 IAFSYEQ----MGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence 9999998 999999999999998764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=123.42 Aligned_cols=212 Identities=13% Similarity=0.076 Sum_probs=158.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009801 172 RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLF 251 (525)
Q Consensus 172 ~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~ 251 (525)
..+++++|.++++++.+..+.. ++...+++++|+..|.++ |.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-------------------------~~~~~~~~~~A~~~~~~a------------~~~ 45 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-------------------------FMKWKPDYDSAASEYAKA------------AVA 45 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-------------------------SSSCSCCHHHHHHHHHHH------------HHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-------------------------ccCCCCCHHHHHHHHHHH------------HHH
Confidence 4567788888888876643210 111146788888887764 456
Q ss_pred HHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----CC----H
Q 009801 252 YYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL----Y 315 (525)
Q Consensus 252 y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~ 315 (525)
|... +++++|+.+|+++++. ++ +.++.++|.+|.. .+++++|+.+|+++++. ++ .
T Consensus 46 ~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 46 FKNA-----KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6655 4999999999998865 23 4578889999998 89999999999999865 22 4
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 316 SAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-- 385 (525)
Q Consensus 316 ~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 385 (525)
.++.++|.+|.. +++++|+.+|++|++. ++ +.++.++|.+|.. .+++++|+.+|+++++.
T Consensus 117 ~~~~~lg~~~~~------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 117 MALDRAGKLMEP------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence 678899999953 5999999999999865 22 4678899999999 99999999999999875
Q ss_pred --CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhcCCHHHHHH
Q 009801 386 --GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-------SSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 386 --~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-------~a~~~l~~~~~~~g~~~~A~~ 445 (525)
+. ..++..+|.++.. .+++++|+.+|++++ ..|. .....++.. +..|+.+.+..
T Consensus 187 ~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~-~~~~d~~~~~~ 253 (307)
T 2ifu_A 187 EMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQA-YDEQDEEQLLR 253 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHH-HHhcCHHHHHH
Confidence 22 3477788888887 899999999999999 7642 123344443 36677655444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-14 Score=117.78 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=93.8
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHH
Q 009801 284 FLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLG 359 (525)
Q Consensus 284 ~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 359 (525)
.||.++.. .++.++|+..+++++... ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|
T Consensus 2 ~LG~~~~~----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-----~~~~~~A~~~~~~al~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRS----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-----AKEYDLAKKYICTYINVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCC----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHH----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35666666 777777777777776543 45566777777776 45777777777777655 5677777778
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHH-HHHHHHHcCC--hHHHHHHHHHH
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATA-LYKLVAERGP--WSSLSRWALES 434 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~-~~~~a~~~~~--~~a~~~l~~~~ 434 (525)
.+|.. .+++++|+..|+++++. +++.+++++|.+|.. .+++++|.. ++++|++.+| +.++...+.++
T Consensus 73 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 73 LLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 77777 77788888888777766 567777777777776 666665554 4577777764 45555666666
Q ss_pred HhcCC
Q 009801 435 YLKGD 439 (525)
Q Consensus 435 ~~~g~ 439 (525)
..+|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 66654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-13 Score=126.63 Aligned_cols=189 Identities=14% Similarity=0.088 Sum_probs=122.6
Q ss_pred cCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 223 RGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 223 ~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
.|++++|.++++++...... + + ....+++++|+.+|.++ |.+|.. .+++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~------~--~----~~~~~~~~~A~~~~~~a------------~~~~~~----~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT------S--F----MKWKPDYDSAASEYAKA------------AVAFKN----AKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------C--S----SSCSCCHHHHHHHHHHH------------HHHHHH----TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHccc------c--c----cCCCCCHHHHHHHHHHH------------HHHHHH----cCCHHHH
Confidence 45667777777766543110 0 1 12236777777777765 446666 7788888
Q ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCC
Q 009801 303 LEWLTHAARQQ--------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGI 366 (525)
Q Consensus 303 ~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~ 366 (525)
+.+|+++++.. ...++.++|.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|..
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-- 128 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD-----LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-- 128 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--
Confidence 88888776542 24466777777766 56777777777777654 22 3456677777742
Q ss_pred CCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHH
Q 009801 367 GVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRW 430 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l 430 (525)
+++++|+.+|+++++. ++ ..++.++|.+|.. .+++++|+.+|+++++.. . ..++..+
T Consensus 129 ---g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 129 ---LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 6777777777777754 11 4566777777776 777777777777777642 1 2355566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 431 ALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
|.++...|++++|+.+|++++ ..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CC
Confidence 777777777777777777777 54
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-11 Score=111.77 Aligned_cols=178 Identities=11% Similarity=-0.046 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GE---PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-- 313 (525)
.+.+++.+|..+ ...+++++|+..|+++++. ++ +.+++.+|.+|.. .+++++|+..|+++++..
T Consensus 3 ~~~~~~~~a~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 3 PPNEIYATAQQK-----LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp CHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcC
Confidence 466778888777 3467888888888888874 22 3678888888888 888888888888888753
Q ss_pred C---HHHHHHHHHHHHhC-------------CCCCccCHHHHHHHHHHHHhC--CChhHHH---HHHHHHHcCCCCcCCH
Q 009801 314 L---YSAYNGIGYLYVKG-------------YGVEKKNYTKAKEYFEKAADN--EEAGGHY---NLGVMYYKGIGVKRDV 372 (525)
Q Consensus 314 ~---~~a~~~lg~~~~~g-------------~~~~~~~~~~A~~~~~~a~~~--~~~~a~~---~lg~~y~~g~~~~~~~ 372 (525)
+ +.+++.+|.++... .....+++++|+..|+++++. +++.+.. .++.+...
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-------- 145 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-------- 145 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH--------
Confidence 2 24778888887541 001134566666666666554 2222221 11111110
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 373 KLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-----WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 373 ~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
.......+|.+|.. .+++++|+..|+++++..| +.+++.+|.++..+|++++|+..+
T Consensus 146 --------------~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 146 --------------LAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp --------------HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 01223577888887 8999999999999999864 357899999999999999999999
Q ss_pred HHHHHc
Q 009801 448 SRMAEL 453 (525)
Q Consensus 448 ~~a~~~ 453 (525)
+++...
T Consensus 208 ~~l~~~ 213 (225)
T 2yhc_A 208 KIIAAN 213 (225)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-11 Score=108.27 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=137.0
Q ss_pred chhhhhHhhhccCCcHHHHHHHHHHHHc--CC---HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCH---HH
Q 009801 212 AEENKGALRKSRGEDDEAFQILEYQAQK--GN---AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEP---QS 281 (525)
Q Consensus 212 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~---~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~---~a 281 (525)
....++..+...|++++|+..|++++.. .+ +.+++.+|.+|...+ ++++|+..|+++++. +++ .+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----DLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3567788899999999999999998774 44 479999999999884 999999999999975 333 48
Q ss_pred HHHHHHHHHcC--------------CCCCCCHHHHHHHHHHHHHcC--CH---HHHHHHHHHHHhCCCCCccCHHHHHHH
Q 009801 282 MEFLGEIYARG--------------AGVERNYTKALEWLTHAARQQ--LY---SAYNGIGYLYVKGYGVEKKNYTKAKEY 342 (525)
Q Consensus 282 ~~~Lg~~y~~g--------------~~~~~~~~~A~~~~~~a~~~~--~~---~a~~~lg~~~~~g~~~~~~~~~~A~~~ 342 (525)
++.+|.++... ....+++++|+..|+++++.. ++ .+...++.+...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~--------------- 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR--------------- 145 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---------------
Confidence 99999998751 011468999999999999863 32 233333332211
Q ss_pred HHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH---HHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 343 FEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ---KAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 343 ~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.....+.+|.+|.. .+++.+|+..|+++++. +++ .+++.+|.+|.. .+++++|+..+++
T Consensus 146 --------~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 146 --------LAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ----MQMNAQAEKVAKI 209 (225)
T ss_dssp --------HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH----cCCcHHHHHHHHH
Confidence 11234678999999 99999999999999987 343 689999999998 9999999999998
Q ss_pred HHHcCC
Q 009801 418 VAERGP 423 (525)
Q Consensus 418 a~~~~~ 423 (525)
+....+
T Consensus 210 l~~~~~ 215 (225)
T 2yhc_A 210 IAANSS 215 (225)
T ss_dssp HHHCCS
T ss_pred HHhhCC
Confidence 887754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=100.54 Aligned_cols=105 Identities=15% Similarity=0.020 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
+++.++|..|.. .+++++|+.+|+++++.+| +.+++++|.++..+|++++|+..++++++. .++.+++++|.
T Consensus 14 ~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 334444444444 4455555555555544432 344444555555555555555555555443 24445555555
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDA 513 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 513 (525)
++.. .+++++|+.+|+++++.+ ++++...|+.|
T Consensus 90 ~~~~----------------~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 90 CLVA----------------MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH----------------CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 5544 334455555555554432 44454444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=100.49 Aligned_cols=108 Identities=18% Similarity=0.070 Sum_probs=91.4
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
.+.++.++|..|.. .+++++|+..|+++++. .++.+++++|.+|.. .+++++|+..|+++++.++ ..+
T Consensus 12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567788999998 89999999999998876 578888999999987 8899999999999988864 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
++++|.++..+|++++|+..|+++++. +++.++.+++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 889999999999999999999999876 5777888887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=107.69 Aligned_cols=159 Identities=8% Similarity=-0.085 Sum_probs=97.2
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC-CHH
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESA--AMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG-NIQ 161 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~ 161 (525)
.+..+.+|..++. .+++++|+..|+++ .+|+++.+++.+|.+|.. .+++++|+..|++++... ++.
T Consensus 6 ~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~ 74 (176)
T 2r5s_A 6 DEQLLKQVSELLQ-------QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE----TKQFELAQELLATIPLEYQDNS 74 (176)
T ss_dssp CTTHHHHHHHHHH-------TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH----TTCHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHhhhccCChH
Confidence 4455666666655 56667777777663 466666777777776666 666677776666665432 333
Q ss_pred HHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcC
Q 009801 162 SKMAVAYTYL-RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKG 240 (525)
Q Consensus 162 a~~~la~~y~-~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 240 (525)
....++.+.. ...+..+|+..|+++++ .+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~------------------------------------------------~~P~ 106 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELA------------------------------------------------ANPD 106 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHH------------------------------------------------HSTT
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHH------------------------------------------------hCCC
Confidence 3333332211 11111123333333322 3456
Q ss_pred CHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG----EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
++.+++.+|.++...+ ++++|+..|+++++.+ ++.++..+|.++.. .|+.++|+..|++++.
T Consensus 107 ~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 107 NFELACELAVQYNQVG-----RDEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHHH
Confidence 7788888888887774 8888888888887753 24577888888887 7788888888887754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=129.10 Aligned_cols=155 Identities=12% Similarity=-0.002 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.+++++|+.+|+++++. ++..++..+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|.. .++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELG-----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT----QQR 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH----TTC
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCC
Confidence 57889999999998865 478899999999987 77999999999999876 567888999999999 899
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhc---CCHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLK---GDVGKAF 444 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~---g~~~~A~ 444 (525)
+++|+.+|+++++. +++.++.++|.++.. .+++++|+.+|+++++.++ ..++..+|.++... |++++|+
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999876 578889999999987 8899999999999988864 67788899999999 9999999
Q ss_pred HHHHHHHHcC--hHHHHHHHH
Q 009801 445 LLYSRMAELG--YEVAQSNAA 463 (525)
Q Consensus 445 ~~~~~a~~~~--~~~a~~~la 463 (525)
..++++++.+ +..++..++
T Consensus 149 ~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 149 AQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhcCCcccChHHHhC
Confidence 9999998874 334444444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=107.28 Aligned_cols=157 Identities=9% Similarity=-0.054 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-ChhHHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-EAGGHY 356 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-~~~a~~ 356 (525)
...+.+|..+.. .+++++|+..|+++++. +++.+++.+|.++.. .|++++|+..+++++... ++....
T Consensus 7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-----~g~~~~A~~~~~~a~~~~p~~~~~~ 77 (176)
T 2r5s_A 7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-----TKQFELAQELLATIPLEYQDNSYKS 77 (176)
T ss_dssp TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-----TTCHHHHHHHHTTCCGGGCCHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHhhhccCChHHHH
Confidence 346677888888 88889999888888654 588888888888876 568889999888887654 344444
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hHHHHHH
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRW 430 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l 430 (525)
.++.+...+ ..+..+|+..++++++. +++.+++.+|.++.. .+++++|+..|+++++.+| ..++..+
T Consensus 78 ~~~~~~~~~---~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 78 LIAKLELHQ---QAAESPELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHHHH---HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHHHHHHh---hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 445443220 22333578888888876 578899999999987 8999999999999998874 3488899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
|.++...|+.++|+..|++++.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999988865
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-11 Score=113.21 Aligned_cols=160 Identities=13% Similarity=-0.067 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C
Q 009801 276 KGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E 351 (525)
Q Consensus 276 ~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~ 351 (525)
.+++.+++.+|..+.. .|++++|+..|+++++. +++.++..+|.++.. .|++++|+..+++++... .
T Consensus 114 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-----~g~~~~A~~~l~~~~~~~p~~ 184 (287)
T 3qou_A 114 PREEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-----LNRSEDAEAVLXTIPLQDQDT 184 (287)
T ss_dssp CCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-----TTCHHHHHHHHTTSCGGGCSH
T ss_pred CCchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-----CCCHHHHHHHHHhCchhhcch
Confidence 4556677777777777 77888888888887765 377778888887776 557888888887776542 2
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WS 425 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~ 425 (525)
.......+..+.. .++..+|+..|+++++. +++.+++++|.++.. .+++++|+..|++++..+| ..
T Consensus 185 ~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 185 RYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp HHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred HHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccccch
Confidence 3334455555666 66777788888887765 677888888888877 7888888888888887764 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++.+++.++...|+.++|...|++++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 777888888888888888888887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-10 Score=109.44 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---CC
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER---GP 423 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~---~~ 423 (525)
++.+|.+|.. .+++++|+.+|+++++. . ...+++++|.+|.. .+++++|+.+|+++++. .+
T Consensus 118 ~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~ 189 (293)
T 2qfc_A 118 QYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHHT----SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcC
Confidence 3456666666 67777777777777643 1 14567777777776 77888888888887732 21
Q ss_pred ------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHH
Q 009801 424 ------WSSLSRWALESYLKGDVGKAFLLYSRMAELG--------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQ 489 (525)
Q Consensus 424 ------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (525)
..+++++|.++..+|++++|+.+++++++.. ...+++++|.++.. .++++
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----------------~g~~~ 253 (293)
T 2qfc_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----------------LEYEE 253 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----------------TTCCH
T ss_pred ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----------------cCCcH
Confidence 1577788888888888888888888887652 26678888888887 55678
Q ss_pred HH-HHHHHHHHh
Q 009801 490 CA-HSLWWQASE 500 (525)
Q Consensus 490 ~A-~~~~~~a~~ 500 (525)
+| ..+|++|+.
T Consensus 254 ~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 254 AEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 88 777888774
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=125.77 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=125.0
Q ss_pred ccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccC
Q 009801 260 RRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKN 335 (525)
Q Consensus 260 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~ 335 (525)
.+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.++.. .++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-----QQR 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-----TTC
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCC
Confidence 46899999999999875 678999999999999 999999999999999874 78999999999987 579
Q ss_pred HHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc---CCH
Q 009801 336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK---KNL 408 (525)
Q Consensus 336 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~---~~~ 408 (525)
+++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++.+++.++.. . +++
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~ 144 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRAL 144 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccH
Confidence 99999999999876 578899999999999 99999999999999987 678999999999997 7 999
Q ss_pred HHHHHHHHHHHHcCC--hHHHHHHH
Q 009801 409 HMATALYKLVAERGP--WSSLSRWA 431 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~--~~a~~~l~ 431 (525)
++|+..++++++.++ ..++..++
T Consensus 145 ~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 145 DVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHhcCCcccChHHHhC
Confidence 999999999999875 34555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=110.25 Aligned_cols=157 Identities=9% Similarity=-0.023 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-- 349 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-- 349 (525)
..+...+..+.. .+++++|+.+++++++.. . ...++.+|.++.. .+++++|+.+++++++.
T Consensus 76 ~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 76 KQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHh
Confidence 345566777777 899999999999998753 2 2345667777765 56999999999999864
Q ss_pred --CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHH
Q 009801 350 --EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----GH----QKAFYQLAKMFHTGVGLKKNLHMATAL 414 (525)
Q Consensus 350 --~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~ 414 (525)
.+ ..+++++|.+|.. .+++++|+.+|+++++. ++ ..+++++|.+|.. .+++++|+.+
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~ 218 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQ 218 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHH
Confidence 12 4588999999999 99999999999999843 22 2689999999998 9999999999
Q ss_pred HHHHHHcCC--------hHHHHHHHHHHHhcCCHHHH-HHHHHHHHHc
Q 009801 415 YKLVAERGP--------WSSLSRWALESYLKGDVGKA-FLLYSRMAEL 453 (525)
Q Consensus 415 ~~~a~~~~~--------~~a~~~l~~~~~~~g~~~~A-~~~~~~a~~~ 453 (525)
++++++..+ ..+++++|.++..+|++++| ..+|++|+..
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999987631 56889999999999999999 8889999864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-11 Score=111.50 Aligned_cols=162 Identities=9% Similarity=-0.056 Sum_probs=139.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.-++++++++.+|..+...+ ++++|+..|++++.. +++.+++.||.++.. .+++++|+..|++++...
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQES-----NYTDALPLLXDAWQLSNQNGEIGLLLAETLIA----LNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH----TTCHHHHHHHHTTSCGGGC
T ss_pred HcCCchhhHHHHHHHHHhCC-----CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH----CCCHHHHHHHHHhCchhhc
Confidence 44788999999999998884 999999999999864 789999999999999 999999999999997654
Q ss_pred -CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC-
Q 009801 314 -LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH- 387 (525)
Q Consensus 314 -~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~- 387 (525)
........+..+.. .++.++|+..|+++++. +++.+++++|.+|.. .+++++|+..|+++++. ++
T Consensus 183 ~~~~~~~~~~~~l~~-----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 183 DTRYQGLVAQIELLX-----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SHHHHHHHHHHHHHH-----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGG
T ss_pred chHHHHHHHHHHHHh-----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccc
Confidence 33344444444443 34677899999999865 689999999999999 99999999999999987 34
Q ss_pred -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 388 -QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE 420 (525)
Q Consensus 388 -~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (525)
..++.+++.++.. .++.++|+..|++++.
T Consensus 254 ~~~a~~~l~~~~~~----~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAA----LGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Confidence 7899999999997 8999999999999875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-09 Score=101.41 Aligned_cols=218 Identities=9% Similarity=0.014 Sum_probs=166.5
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHH----HcCCCCCCC
Q 009801 227 DEAFQILEYQ--AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIY----ARGAGVERN 298 (525)
Q Consensus 227 ~~A~~~~~~~--~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y----~~g~~~~~~ 298 (525)
++|++.+.++ .+|.+..+++..+.+....+ . .++++++.++.+++.. .+..+++..+.++ ... +..++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~-~--~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLP-N--RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-NNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCT-T--SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-TTCCC
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcc-c--ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-cccCC
Confidence 3455555444 44577888888888887651 0 3899999999998875 6778888888888 441 11268
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHH--HHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC-
Q 009801 299 YTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYT--KAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD- 371 (525)
Q Consensus 299 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~--~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~- 371 (525)
+++++.++.++++.. +..++...+.+... .+.++ +++.++.++++. .+..|+...+.+... .+.
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~-----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~----l~~~ 196 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDT-----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS----KKHL 196 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS----SGGG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cccc
Confidence 899999999998875 88899999988875 23555 899999999876 577899999999887 665
Q ss_pred -----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCC
Q 009801 372 -----VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----PWSSLSRWALESYLKGD 439 (525)
Q Consensus 372 -----~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~~~~~g~ 439 (525)
+++++.++.+++.. ++..++++++.++... .+..+....++.++++.+ .+.++..++.++...|+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF---DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT---TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc---CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 88999999999876 7889999999988772 233555666777776654 57788899999999999
Q ss_pred HHHHHHHHHHHHH-cChHHHHH
Q 009801 440 VGKAFLLYSRMAE-LGYEVAQS 460 (525)
Q Consensus 440 ~~~A~~~~~~a~~-~~~~~a~~ 460 (525)
.++|+++|+++++ .+...+-+
T Consensus 274 ~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 274 YNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHHhccChHHHHH
Confidence 9999999999987 45544433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-10 Score=103.34 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQL 394 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l 394 (525)
.++.+|..+.. .+++++|+.+|+++++. ++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++
T Consensus 8 ~~~~~g~~~~~-----~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 8 SLWNEGVLAAD-----KKDWKGALDAFSAVQDP-HSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHH-----hCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 35666666665 45777777777777633 66777788888877 78888888888887765 567777888
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCCh------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGPW------------------SSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------------------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
|.+|.. .+++++|+.+|+++++..+. .+++.+|.++...|++++|+.+++++++..
T Consensus 78 g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 78 GMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHH----cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888876 77888888888888775432 678888888888888888888888888763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=100.35 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
+++.+++.+|.++.. .+++++|+..|+++++. +++.+++++|.++.. .+++++|+..|+++++.+| +.
T Consensus 34 ~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI----KEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCCCCcH
Confidence 356788999999999 99999999999999877 678999999999998 8999999999999998874 78
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+++++|.++..+|++++|+.+|+++++..
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999874
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=107.17 Aligned_cols=152 Identities=9% Similarity=-0.015 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHH------HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC-
Q 009801 285 LGEIYARGAGVERNYTKALEWLTHAARQQ--LYS------AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE- 351 (525)
Q Consensus 285 Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~------a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~- 351 (525)
....+.. .+++++|+.+++++++.. .+. .+..+|.++.. .+++++|+.+|+++++. .+
T Consensus 81 ~i~~~~~----~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 81 QVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-----KVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHH----HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-----ccCHHHHHHHHHHHHHHhcccccH
Confidence 3555666 889999999999998753 222 33457777754 56999999999999974 22
Q ss_pred ---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 352 ---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-----G----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 352 ---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
..++.++|.+|.. .+++++|+.+|+++++. + ...+++++|.+|.. .+++++|+.++++++
T Consensus 152 ~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 152 YQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAI 223 (293)
T ss_dssp THHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHH
Confidence 3378999999999 99999999999999952 1 34588999999998 999999999999998
Q ss_pred HcC--------ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 009801 420 ERG--------PWSSLSRWALESYLKG-DVGKAFLLYSRMAEL 453 (525)
Q Consensus 420 ~~~--------~~~a~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 453 (525)
+.. ...+++++|.++..+| ++++|+.+|++|+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 763 1678899999999999 579999999999864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=103.24 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=120.0
Q ss_pred ccCHHHHHHHHHHHHhCC--Chh------HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHH
Q 009801 333 KKNYTKAKEYFEKAADNE--EAG------GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAK 396 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~--~~~------a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~ 396 (525)
.+++++|+.+++++++.. .+. .+..+|.+|.. .+++++|+.+|+++++. ++ ..++.++|.
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 459999999999998753 222 23358999988 89999999999999984 22 447899999
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHc-----CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------hHHHH
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAER-----GP----WSSLSRWALESYLKGDVGKAFLLYSRMAELG--------YEVAQ 459 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------~~~a~ 459 (525)
+|.. .+++++|+.+|+++++. .+ ..+++++|.++..+|++++|+.++++|++.. -+.++
T Consensus 164 ~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 164 IYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9998 99999999999999952 11 4578899999999999999999999998651 27799
Q ss_pred HHHHHHHhhhCCCccccCCCCCCCChH-hHHHHHHHHHHHHh
Q 009801 460 SNAAWILDKYGEGSMCMGESGFCTDAE-RHQCAHSLWWQASE 500 (525)
Q Consensus 460 ~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~ 500 (525)
+++|.++.. .+ ++++|+.+|++|++
T Consensus 240 ~~lg~~~~~----------------~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRK----------------LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHH----------------TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------hCCcHHHHHHHHHHHHH
Confidence 999999998 44 47999999999985
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-10 Score=94.07 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh---------H
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGY---------E 456 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------~ 456 (525)
+.++.++|..+.. .+++++|+.+|++|++.+| +.++.++|.++..+|++++|+..++++++... .
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 4567789999988 8999999999999999875 67888999999999999999999999987631 3
Q ss_pred HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 009801 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDA 513 (525)
Q Consensus 457 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~ 513 (525)
.++.++|.++.. .+++++|+.+|+++++.. +++....|..+
T Consensus 84 ~~~~~lg~~~~~----------------~~~~~~A~~~~~kal~~~~~~~~~~~l~~l 125 (127)
T 4gcn_A 84 KAMSRAGNAFQK----------------QNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence 477888888887 678999999999999754 77777666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-10 Score=102.89 Aligned_cols=125 Identities=18% Similarity=0.107 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW 430 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 430 (525)
..++.+|.++.. .+++++|+..|+++++ .++.+++++|.+|.. .+++++|+.+|+++++.++ ..+++.+
T Consensus 7 ~~~~~~g~~~~~----~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 7 ISLWNEGVLAAD----KKDWKGALDAFSAVQD-PHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHcC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 356889999999 9999999999999874 378999999999998 9999999999999999864 7789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC------------------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAELG------------------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAH 492 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~~------------------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 492 (525)
|.++...|++++|+.+|+++++.. .+.+++++|.++.. .+++++|+
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~ 141 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----------------KEEWKKAE 141 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----------------TTCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----------------ccCHHHHH
Confidence 999999999999999999999852 34899999999998 77899999
Q ss_pred HHHHHHHhCC
Q 009801 493 SLWWQASEQG 502 (525)
Q Consensus 493 ~~~~~a~~~~ 502 (525)
.+|+++++..
T Consensus 142 ~~~~~al~~~ 151 (213)
T 1hh8_A 142 EQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHcC
Confidence 9999999875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-09 Score=99.73 Aligned_cols=212 Identities=9% Similarity=-0.036 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHH----HhCCCC
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER--NYTKALEWLTHAARQQ--LYSAYNGIGYLY----VKGYGV 331 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~----~~g~~~ 331 (525)
..++|+..+.+++.. ++..+++..+.++.. .+ ++++++.++.+++..+ +..++...+.++ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~----l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~- 121 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKN----LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-N- 121 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-T-
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH----cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-c-
Confidence 557899999999876 678999999999988 66 9999999999999875 788999999888 431 1
Q ss_pred CccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHH--HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 009801 332 EKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVK--LACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 332 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~--~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~ 405 (525)
..+++++++.++.++++. .+..+++..++++.. .+.++ +++.++.++++. .+..|+.+.+.+... .
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~----l 193 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS----K 193 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS----S
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c
Confidence 114889999999999876 578899999999998 88887 999999999987 688899999999886 4
Q ss_pred CC------HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc-----ChHHHHHHHHHHHhhhCC
Q 009801 406 KN------LHMATALYKLVAERG--PWSSLSRWALESYLKGDVGK-AFLLYSRMAEL-----GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 406 ~~------~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~-A~~~~~~a~~~-----~~~~a~~~la~~~~~~~~ 471 (525)
+. ++++++++.+++..+ +..+++.++.++...|+..+ .....+++++. .++.++..++.++..
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--- 270 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--- 270 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH---
T ss_pred cccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc---
Confidence 44 999999999999987 47899999999999997555 44466666654 478999999999987
Q ss_pred CccccCCCCCCCChHhHHHHHHHHHHHHh-CCC
Q 009801 472 GSMCMGESGFCTDAERHQCAHSLWWQASE-QGN 503 (525)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~ 503 (525)
.++.++|++.|+++++ .+.
T Consensus 271 -------------~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 271 -------------QKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCG
T ss_pred -------------cCCHHHHHHHHHHHHhccCh
Confidence 6688999999999987 453
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-10 Score=91.24 Aligned_cols=107 Identities=26% Similarity=0.346 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
+++.+|.++.. .+++++|+.+++++++. .+..++..++.++.. .+++++|+.++++++...+ ..++..
T Consensus 3 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 34445555555 55555555555554443 234444455555544 4455555555555554432 334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
+|.++...|++++|+.+++++++. .++.++..+|.++..
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 555555555555555555555443 234445555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=97.45 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 158 GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 158 ~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
++..+++.+|..+...|++++|+..|++++. .
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------------------------------------------------~ 65 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------------------------------------------------Y 65 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------------H
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------------------h
Confidence 3566777777777777777777777777754 3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
+|+++.+++.+|.+|...+ ++++|+..|+++++. +++.+++++|.+|.. .|++++|+.+|+++++..
T Consensus 66 ~P~~~~~~~~lg~~~~~~g-----~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 66 DFYNVDYIMGLAAIYQIKE-----QFQQAADLYAVAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 5566777777777777663 777777777777654 667777777777777 777777777777777664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=8.5e-10 Score=90.08 Aligned_cols=112 Identities=29% Similarity=0.458 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHH
Q 009801 334 KNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLH 409 (525)
Q Consensus 334 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~ 409 (525)
+++++|+.+++++++. .++.+++.+|.++.. .+++++|+.++++++.. .++.++..+|.++.. .++++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 86 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYD 86 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----hcCHH
Confidence 3455555555554432 234445555555555 55555555555555543 344455555555554 55555
Q ss_pred HHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 410 MATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 410 ~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|+.+++++++..+ ..++..+|.++...|++++|+.+++++++.
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666555555442 445555666666666666666666655543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.1e-11 Score=115.15 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C---------------hhHHH
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E---------------AGGHY 356 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~ 356 (525)
..++++|+..|+++++. ..+.++..+|.++.. .+++++|+.+|+++++.. + +.+++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~-----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK-----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence 34566666666666543 256667777777766 567777777777776542 2 34555
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHH
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWAL 432 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~ 432 (525)
++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++..| ..++..++.
T Consensus 201 nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 201 NLAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 66666666 66666666666666554 355566666666655 5566666666666655543 445555566
Q ss_pred HHHhcCCHHHH
Q 009801 433 ESYLKGDVGKA 443 (525)
Q Consensus 433 ~~~~~g~~~~A 443 (525)
++...|++++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56556655555
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-10 Score=102.92 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHH-------HHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFL-------GEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------g~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.++..|.-+. . +|+..|...|.+++.. +.+.+|..+ +.++.. ..+..+++..+++++...
T Consensus 9 ~~~~~~~~~~-~-----~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~----~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 9 SLFESAVSML-P-----MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFR----AWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp HHHHHHHHHT-T-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHH----HHHTGGGTTHHHHTTTCCG
T ss_pred HHHHHHhccc-C-----CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHH----HHHHHHHHHHHHHHhcCCh
Confidence 3455555552 2 5999999999999875 678888888 677777 677788888888888731
Q ss_pred -------C---------------HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCc
Q 009801 314 -------L---------------YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVK 369 (525)
Q Consensus 314 -------~---------------~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~ 369 (525)
+ .+....++.++.. .+++++|...|...+..+ +. +.+.+|.++.. .
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~-----~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~ 148 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAA-----QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----A 148 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHH-----HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----T
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----c
Confidence 1 3455566777765 679999999999887654 34 89999999999 9
Q ss_pred CCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C---hHHHHHHHHHHHhcCCH
Q 009801 370 RDVKLACKYFLVAANAGH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--P---WSSLSRWALESYLKGDV 440 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~l~~~~~~~g~~ 440 (525)
+++++|+..|+.+....+ ..+++++|.++.. .+++++|+.+|++++... | ..+.+.+|.++..+|+.
T Consensus 149 ~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 999999999998776543 3589999999998 999999999999998654 2 35889999999999999
Q ss_pred HHHHHHHHHHHHcCh
Q 009801 441 GKAFLLYSRMAELGY 455 (525)
Q Consensus 441 ~~A~~~~~~a~~~~~ 455 (525)
++|...|+++.+...
T Consensus 225 deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 225 SAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998743
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-10 Score=92.04 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------ 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------ 423 (525)
+.++.+||..+.. .+++++|+.+|++|++. .++.++.++|.+|.. .+++++|+.+++++++.++
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHHHHHHHHHHhCcccchhh
Confidence 4466778888888 88888888888888776 567788888888887 7888888888888887642
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 ---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..++.++|.++..+|++++|+.+|+++++.
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 246778888888888888888888888875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-09 Score=92.22 Aligned_cols=124 Identities=14% Similarity=0.026 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+..++.+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++..+ ..++
T Consensus 13 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHH
Confidence 4556777777777 77777777777777765 467777777777776 7777888888887777753 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH--HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI--LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
+.+|.++...|++++|+.+++++++. .+..++..++.+ +.. .+++++|+.+++++.
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----------------~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----------------QKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----------------HHHHHHHHHcccchH
Confidence 77777788888888888888877765 345555444444 444 567777877777654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=107.75 Aligned_cols=194 Identities=9% Similarity=0.045 Sum_probs=122.2
Q ss_pred cCCHHHHHHHHHHHHc--CCCHHHHHHH-------HHHHhccccHHHHHHHHHHHHHHHHhhhhccCC-CCC----chhh
Q 009801 141 ERNKGKAFLYHHFAAE--GGNIQSKMAV-------AYTYLRQDMHDKAVKLYAELAEIAVNSFLISKD-SPV----IEPI 206 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~--~~~~~a~~~l-------a~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~-~~~----~~~~ 206 (525)
++|...|.+.|.++++ ++..+++..+ +..+....+..+++..+++.+++.+..+..... ..+ .-++
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 7889999999998875 4688888888 788888888888888888888766665433222 111 0000
Q ss_pred hhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--CHHHHHH
Q 009801 207 RIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSMEF 284 (525)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 284 (525)
. .-.+....++.++... +++++|.+.|...+..+ +. +.+.
T Consensus 99 ~--------------------------------~r~dl~LayA~~L~~~-----g~y~eA~~~l~~~~~~~p~~~-~~~~ 140 (282)
T 4f3v_A 99 T--------------------------------SPLAITMGFAACEAAQ-----GNYADAMEALEAAPVAGSEHL-VAWM 140 (282)
T ss_dssp S--------------------------------SHHHHHHHHHHHHHHH-----TCHHHHHHHHTSSCCTTCHHH-HHHH
T ss_pred C--------------------------------CHhHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCchH-HHHH
Confidence 0 0123344455555555 36666666666654432 23 6666
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC-----ChhHH
Q 009801 285 LGEIYARGAGVERNYTKALEWLTHAARQQL----YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE-----EAGGH 355 (525)
Q Consensus 285 Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~-----~~~a~ 355 (525)
+|.++.. .+++++|+.+|+++....+ ..+++.+|.++.. .|++++|+.+|++++... .+++.
T Consensus 141 ~a~l~~~----~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-----LG~~~eAl~~l~~a~~g~~~P~~~~da~ 211 (282)
T 4f3v_A 141 KAVVYGA----AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-----LALFTEAERRLTEANDSPAGEACARAIA 211 (282)
T ss_dssp HHHHHHH----TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHhcCCCCccccHHHH
Confidence 6666666 6666666666666555432 2366666666665 456677777777666443 23466
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+++|.++.. +++.++|...|+++...
T Consensus 212 ~~~glaL~~----lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 212 WYLAMARRS----QGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhc
Confidence 777777777 77777777777766655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-09 Score=95.79 Aligned_cols=125 Identities=16% Similarity=0.120 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-- 421 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-- 421 (525)
+.++..+|.+|.. .+++++|+.+++++++. ....++.++|.++.. .+++++|+.+++++++.
T Consensus 26 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 26 SGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM----AGNWDAARRCFLEERELLA 97 (203)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence 3455555555555 55555555555555541 123455555555555 55666666666655544
Q ss_pred --C-C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----Ch----HHHHHHHHHHHhhhCCCccccCCCCCCCChH
Q 009801 422 --G-P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GY----EVAQSNAAWILDKYGEGSMCMGESGFCTDAE 486 (525)
Q Consensus 422 --~-~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~----~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~ 486 (525)
+ + ..++..+|.++...|++++|+.+++++++. ++ ..++.++|.++.. .+
T Consensus 98 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----------------~g 161 (203)
T 3gw4_A 98 SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ----------------EK 161 (203)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TT
T ss_pred HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----------------Cc
Confidence 1 1 223455566666666666666666665532 11 2234555555555 44
Q ss_pred hHHHHHHHHHHHHh
Q 009801 487 RHQCAHSLWWQASE 500 (525)
Q Consensus 487 ~~~~A~~~~~~a~~ 500 (525)
++++|+.+++++++
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55666666665554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-10 Score=105.93 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=136.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA 352 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~ 352 (525)
.++.++..+|..+.. .+++++|+.+|+++++.. ++.++.++|.+|.. .+++++|+..++++++. +++
T Consensus 2 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 2 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-----MQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHTTSCTTCH
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHhCCCCH
Confidence 356788899999998 999999999999998764 78999999999987 56999999999999876 578
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQK--AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLS 428 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~--a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~ 428 (525)
.+++.+|.+|.. .+++++|+.+|+++++.+... .+....... ....++..|........ ......
T Consensus 73 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~ 141 (281)
T 2c2l_A 73 KAHFFLGQCQLE----MESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-------LRIAKKKRWNSIEERRIHQESELHS 141 (281)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH-------HHHHHHHHHHHHHHTCCCCCCHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 899999999999 999999999999998763211 110011111 12233444444444333 344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
.++.. ..|++++|+..++++++. ++......++.++... .+.+++|...|+++.+.
T Consensus 142 ~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------------~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 142 YLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH---------------DKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH---------------HHHHHHHHHHHHHSSCT
T ss_pred HHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH---------------HHHHHHHHHHHHhhhcc
Confidence 55543 378999999999999876 3455555666666552 46788999999988753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=95.27 Aligned_cols=105 Identities=14% Similarity=-0.016 Sum_probs=92.4
Q ss_pred HHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 009801 341 EYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYK 416 (525)
Q Consensus 341 ~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~ 416 (525)
..|+++++.+ ++.+++.+|.++.. .+++++|+..|++++.. .++.+++.+|.++.. .+++++|+.+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----HhhHHHHHHHHH
Confidence 4567777663 66788999999999 99999999999999876 688999999999998 899999999999
Q ss_pred HHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 417 LVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 417 ~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++..+| +.+++.+|.++...|++++|+.+|+++++.
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998864 778999999999999999999999999876
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=112.77 Aligned_cols=143 Identities=18% Similarity=0.145 Sum_probs=126.8
Q ss_pred cCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C---------------HHHHHHH
Q 009801 261 RDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L---------------YSAYNGI 321 (525)
Q Consensus 261 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~l 321 (525)
.++++|+..|+++++. .++.++..+|.+|.. .+++++|+.+|+++++.. + ..++.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 6788899999887754 678899999999999 999999999999999864 4 5899999
Q ss_pred HHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 009801 322 GYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKM 397 (525)
Q Consensus 322 g~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~ 397 (525)
|.++.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+
T Consensus 203 a~~~~~-----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 203 AMCHLK-----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999988 77999999999999876 588999999999999 99999999999999987 688999999999
Q ss_pred HHcCCCCcCCHHHH-HHHHHHHHH
Q 009801 398 FHTGVGLKKNLHMA-TALYKLVAE 420 (525)
Q Consensus 398 y~~g~g~~~~~~~A-~~~~~~a~~ 420 (525)
+.. .+++++| ...|++...
T Consensus 274 ~~~----~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQR----IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHH----HHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHH
Confidence 997 8888888 556666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-09 Score=95.93 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHcC
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKG 365 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g 365 (525)
.|++++|...++..... ..+.++..+|.++.. .+++++|+.+++++++. ..+.++.++|.+|..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~- 78 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAF-----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM- 78 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-
Confidence 45666676643333222 245666777777765 45777777777777652 234567788888888
Q ss_pred CCCcCCHHHHHHHHHHHHHc----C-C----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----hHHHH
Q 009801 366 IGVKRDVKLACKYFLVAANA----G-H----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER----GP----WSSLS 428 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~~~----~-~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~ 428 (525)
.+++++|+.+++++++. + + ..++.++|.++.. .+++++|+.+++++++. ++ ..++.
T Consensus 79 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 79 ---AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 88888888888888765 2 2 3467888888887 88999999999998754 22 23567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+|.++...|++++|+.+++++++.
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-09 Score=86.79 Aligned_cols=107 Identities=14% Similarity=0.017 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+..+..+|..+.. .+++++|+.+|+++++. +++.++.++|.++.. .+++++|+.+|+++++.+| ..++
T Consensus 4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4677888999988 89999999999998876 578889999999987 8899999999999998874 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--------hHHHHHHHHHHH
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAELG--------YEVAQSNAAWIL 466 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~~--------~~~a~~~la~~~ 466 (525)
+.+|.++...|++++|+.+|+++++.. +..+...++.+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 899999999999999999999998654 444555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-09 Score=90.94 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 390 (525)
+..+..+|.++.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+++++++. .++.+
T Consensus 13 ~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 13 AEELKTQANDYFK-----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHH
Confidence 4556667777765 45777777777777654 467777888888888 88888888888888766 56778
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH--HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS--RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~--~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.+|.++.. .+++++|+.+|+++++..+ ..++. .++..+...|++++|+.+++++...
T Consensus 84 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 84 YYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888877 7888888888888887764 34443 3444477778888888888776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-10 Score=105.08 Aligned_cols=189 Identities=10% Similarity=-0.049 Sum_probs=128.1
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC--C
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG--G 158 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 158 (525)
.++.+++.+|..++. .+++++|+..|+++. ++.++.+++.+|.+|.. .+++++|+..|+++++. +
T Consensus 2 ~~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 2 PSAQELKEQGNRLFV-------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp CCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTT
T ss_pred hhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCC
Confidence 456788899998887 889999999999975 67899999999999998 99999999999999875 6
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHH--
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQ-- 236 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-- 236 (525)
+..+++.+|.+|...|++++|+..|+++++..+.+... ... ...... ...++..+....
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-----~~~-----------~~~~~~---~~~~~~~~~~~~~~ 131 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN-----FGD-----------DIPSAL---RIAKKKRWNSIEER 131 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----CCS-----------HHHHHH---HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhh-----HHH-----------HHHHHH---HHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988764211 000 000000 011111111111
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG--EPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
..+.++.....++.+. . +++++|++.++++++.+ +......++.++..- .+.+++|...|.++.+
T Consensus 132 ~~~~~~~i~~~l~~l~-~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 132 RIHQESELHSYLTRLI-A------AERERELEECQRNHEGHEDDGHIRAQQACIEAKH---DKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCCCCHHHHHHHHHH-H------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH---HHHHHHHHHHHHHSSC
T ss_pred HHhhhHHHHHHHHHHH-H------HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH---HHHHHHHHHHHHhhhc
Confidence 1224555555555554 1 36677777777766553 233444444444430 2456666666666543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-10 Score=93.20 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=76.3
Q ss_pred HHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCc
Q 009801 149 LYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGED 226 (525)
Q Consensus 149 ~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (525)
..|++++.. ++..+++.+|..+...|++++|+..|++++.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------------------------- 49 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-------------------------------------- 49 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------------------------------
Confidence 345566554 3566777777777777777777777777654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 009801 227 DEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALE 304 (525)
Q Consensus 227 ~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~ 304 (525)
.++.++.+++.+|.++...+ ++++|+.+|++++.. +++.+++++|.+|.. .|++++|+.
T Consensus 50 ----------~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~~ 110 (148)
T 2vgx_A 50 ----------LDHYDSRFFLGLGACRQAMG-----QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ----XGELAEAES 110 (148)
T ss_dssp ----------HCTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHH
T ss_pred ----------cCcccHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHH
Confidence 34566777777787777663 778888888877754 567777778887777 777888888
Q ss_pred HHHHHHHc
Q 009801 305 WLTHAARQ 312 (525)
Q Consensus 305 ~~~~a~~~ 312 (525)
+|+++++.
T Consensus 111 ~~~~al~~ 118 (148)
T 2vgx_A 111 GLFLAQEL 118 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-09 Score=86.40 Aligned_cols=108 Identities=16% Similarity=-0.005 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAA 463 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la 463 (525)
+..+..+|..+.. .+++++|+.+|+++++.+| +.+++.+|.++...|++++|+.+++++++. .++.+++++|
T Consensus 4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5678889999998 9999999999999999875 678899999999999999999999999987 5788999999
Q ss_pred HHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--------CHHHHHHHHHHHH
Q 009801 464 WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--------NEHAALLIGDAYY 515 (525)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~y~ 515 (525)
.++.. .+++++|+.+|+++++.. +..+...|+.+..
T Consensus 80 ~~~~~----------------~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 80 TAQIA----------------VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHH----------------TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHH----------------HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99998 778999999999998754 5677777777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-09 Score=86.44 Aligned_cols=110 Identities=18% Similarity=0.102 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
++.+++.+|.++.. .+++++|+..|+++++. .+..++..+|.++.. .+++++|+.+++++++..+ ..+
T Consensus 15 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCchHH
Confidence 45677888888888 88888888888888776 467788888888876 7888888888888887753 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
++.+|.++...|++++|+.+++++++. .+..++..++.++..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 788888888888888888888888776 456677777777755
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-09 Score=90.84 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
++.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.++ ..+
T Consensus 10 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHH
Confidence 45677888899988 89999999999998876 578889999999987 8899999999999988864 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
++.+|.++..+|++++|+.+|+++++. +++.++.+.+...
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 889999999999999999999999876 4555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-09 Score=89.79 Aligned_cols=104 Identities=16% Similarity=-0.010 Sum_probs=87.8
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 342 YFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 342 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.|+++++. +++.+++.+|..+.. .+++++|+..|++++.. .++.+++.+|.++.. .+++++|+.+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSY 77 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 44455544 356678899999999 99999999999999876 578899999999998 8999999999999
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 418 VAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 418 a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++..+| +.+++.+|.++...|++++|+.+|+++++.
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998864 678889999999999999999999999876
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.5e-09 Score=103.92 Aligned_cols=190 Identities=15% Similarity=0.076 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC-------------------HHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE-------------------PQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
|.+...-|.-+... +++++|++.|.++++... ..++..||.+|.. .+++++|
T Consensus 4 p~~~l~~a~~l~~~-----~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a 74 (434)
T 4b4t_Q 4 PGSKLEEARRLVNE-----KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKL 74 (434)
T ss_dssp TTHHHHHHHHHHHH-----TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHH
T ss_pred hHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHH
Confidence 34445555555555 388888888888887521 2468899999999 9999999
Q ss_pred HHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHcCC
Q 009801 303 LEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGI 366 (525)
Q Consensus 303 ~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g~ 366 (525)
+.++++++.. + ...+...+|.++.. .+++++|+.++++++.. ..+.++.+||.+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 147 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV-----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-- 147 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC-----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH--
Confidence 9999998763 1 12345667777754 56999999999998753 235688899999999
Q ss_pred CCcCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----C----hHHHHH
Q 009801 367 GVKRDVKLACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-----P----WSSLSR 429 (525)
Q Consensus 367 ~~~~~~~~A~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~----~~a~~~ 429 (525)
.+++.+|...++++... ...+++..++.+|.. .+++++|..+|+++.... + ...+..
T Consensus 148 --~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 148 --KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp --HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred --ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 99999999999998753 135688899999998 999999999999997652 2 234557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 430 WALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+|.++...|++++|..+|.++.+.
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788888999999999999998753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-09 Score=90.54 Aligned_cols=107 Identities=17% Similarity=0.031 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNA 462 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~l 462 (525)
++.+++.+|.++.. .+++++|+.+|+++++..+ ..+++.+|.++...|++++|+.+|+++++. .++.+++++
T Consensus 10 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46678899999998 9999999999999999874 778899999999999999999999999987 578999999
Q ss_pred HHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 009801 463 AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDA 513 (525)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 513 (525)
|.++.. .+++++|+.+|+++++.. ++++++..+..
T Consensus 86 g~~~~~----------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 86 GLARFD----------------MADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHH----------------TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHH----------------ccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999998 778999999999998753 55655555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=9e-09 Score=83.94 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 390 (525)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+++++++. .++.+
T Consensus 16 ~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 16 ALMVKNKGNECFQ-----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHH-----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCchHH
Confidence 4455556665554 34666666666666554 345566666666666 66666666666666654 45566
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG 438 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g 438 (525)
++.+|.++.. .+++++|+.+++++++..+ ..++..++.++..+|
T Consensus 87 ~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666665 6666666666666666553 345556666555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=90.06 Aligned_cols=103 Identities=12% Similarity=0.000 Sum_probs=93.3
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE- 156 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~- 156 (525)
.+|+++.+++.+|..++. .+++++|+..|+++. +|.++.+++.+|.+|.. .+++++|+.+|++++.
T Consensus 13 ~~p~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQ-------AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSYGALM 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhc
Confidence 456678889999999887 889999999999964 78899999999999998 9999999999999976
Q ss_pred -CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Q 009801 157 -GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNS 193 (525)
Q Consensus 157 -~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~ 193 (525)
++++.+++.+|.+|...|++++|+.+|+++++..+.+
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5689999999999999999999999999999987754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.7e-09 Score=103.82 Aligned_cols=209 Identities=12% Similarity=0.065 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
|.+...-|.-+...|++++|++.|.++++..+....... ..+........
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~------- 53 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA-----------------------GASVDDKRRNE------- 53 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS-----------------------SSSBCSHHHHH-------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHH-----------------------HHHHHHHHhhh-------
Confidence 345566677778889999999999988775433211100 00001111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
...++..||.+|...+ ++++|+.+++++++. +. ..+...+|.++.. .+++++|+.++++++.
T Consensus 54 -~~~al~~l~~~y~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 123 (434)
T 4b4t_Q 54 -QETSILELGQLYVTMG-----AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIE 123 (434)
T ss_dssp -HHHHHHHHHHHHHHHT-----CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 1245677888887774 888888888887653 11 1344556777766 7888888888888865
Q ss_pred c--------CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHcCCCCcCCHHHH
Q 009801 312 Q--------QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--------EEAGGHYNLGVMYYKGIGVKRDVKLA 375 (525)
Q Consensus 312 ~--------~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g~~~~~~~~~A 375 (525)
. ....+..+||.+|.. .|++++|+.+++++... ....++..+|.+|.. .+++++|
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A 194 (434)
T 4b4t_Q 124 FAKREKRVFLKHSLSIKLATLHYQ-----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKS 194 (434)
T ss_dssp HHHHSSCCSSHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHHHH-----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHH
Confidence 3 135677888888876 56888888888887643 124577888888888 8888888
Q ss_pred HHHHHHHHHc----CC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 376 CKYFLVAANA----GH-----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 376 ~~~~~~a~~~----~~-----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
..+|+++... .+ ...+..+|.++.. .+++++|..+|.++.+.
T Consensus 195 ~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 195 KASLTAARTAANSIYCPTQTVAELDLMSGILHCE----DKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHH
Confidence 8888887654 22 2345556666665 78888888888888653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-09 Score=87.67 Aligned_cols=124 Identities=16% Similarity=-0.000 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG-- 422 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 422 (525)
.++..+|.+|.. .+++++|+.+++++++. ++ ..++..+|.++.. .+++++|+.+++++++..
T Consensus 10 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 10 RAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Confidence 345666666666 66677777666666644 22 1356666777766 677777777777776542
Q ss_pred --C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhH
Q 009801 423 --P----WSSLSRWALESYLKGDVGKAFLLYSRMAEL----G----YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (525)
Q Consensus 423 --~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~----~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (525)
+ ..++..+|.++...|++++|+.+++++++. + ...++.++|.++.. .+++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----------------~g~~ 145 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----------------LGNH 145 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------HTCH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----------------ccCH
Confidence 1 345667777777777777777777777643 1 23466677777766 5567
Q ss_pred HHHHHHHHHHHh
Q 009801 489 QCAHSLWWQASE 500 (525)
Q Consensus 489 ~~A~~~~~~a~~ 500 (525)
++|+.+++++++
T Consensus 146 ~~A~~~~~~a~~ 157 (164)
T 3ro3_A 146 DQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-07 Score=86.10 Aligned_cols=226 Identities=8% Similarity=-0.031 Sum_probs=177.6
Q ss_pred ccCCc-HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC-----ccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHc
Q 009801 222 SRGED-DEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGL-----RRDRTKALMWFSKAADK--GEPQSMEFLGEIYAR 291 (525)
Q Consensus 222 ~~~~~-~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~-----~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 291 (525)
..|.+ ++|+.++.+++. |.+..++..-+.+....+... ...+++++.++.+++.. .+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 34455 589999999855 578899999998887653000 01268999999999875 688999999999987
Q ss_pred CCCCCC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccC-HHHHHHHHHHHHhC--CChhHHHHHHHHHHc
Q 009801 292 GAGVER--NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKN-YTKAKEYFEKAADN--EEAGGHYNLGVMYYK 364 (525)
Q Consensus 292 g~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 364 (525)
.+ ++++++.++.++++.+ +..++...+.+... .+. +++++.++.++++. .+..|+...+.++..
T Consensus 121 ----l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 121 ----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred ----cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 55 5899999999999875 89999999999876 234 68999999999876 688999999998876
Q ss_pred CCC----------CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc-------CCHHHHHHHHHHHHHcCChH
Q 009801 365 GIG----------VKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK-------KNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 365 g~~----------~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~-------~~~~~A~~~~~~a~~~~~~~ 425 (525)
-.. ..+.+++++.++.+++.. ++..+++++..++..+.|.. +-++++++++++.++..|..
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 100 015688999999999976 78999999988888765532 45899999999999999877
Q ss_pred HHHHHHHHHH-----hcCCHHHHHHHHHHHHHcChH
Q 009801 426 SLSRWALESY-----LKGDVGKAFLLYSRMAELGYE 456 (525)
Q Consensus 426 a~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~ 456 (525)
.+..++.+.. ..|..++...++.+.++.++.
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 7766655543 357888999999999887643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-08 Score=81.75 Aligned_cols=111 Identities=19% Similarity=0.083 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
++.+++.+|.++.. .+++++|+.+|++++.. .++.++..+|.++.. .+++++|+.+++++++..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccCHHH
Confidence 45667788888888 88888888888888766 567888888888887 8888888888888888764 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
++.+|.++...|++++|+.+++++++. +++.++..++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 788888888888999999998888876 4677888888888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-09 Score=92.40 Aligned_cols=114 Identities=12% Similarity=0.177 Sum_probs=91.2
Q ss_pred ccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH-HHcCCCCcCC
Q 009801 333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKM-FHTGVGLKKN 407 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~-y~~g~g~~~~ 407 (525)
.+++++|+.+++++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+ +.. .++
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----~~~ 94 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ----ASQ 94 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----TTT
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cCC
Confidence 45788888888888765 477888888888888 88888999888888866 578888888888 655 677
Q ss_pred H--HHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 408 L--HMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 408 ~--~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+ ++|+.+++++++.+| ..+++.+|.++...|++++|+.+++++++..
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7 889999999888764 6778888888999999999999999888764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=87.69 Aligned_cols=95 Identities=13% Similarity=-0.128 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW--------------SSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--------------~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+..+.+.|..+.. .+++++|+..|++|++..|. .++.++|.++..+|++++|+.++++|++.
T Consensus 11 a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 11 AYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456667777776 77888888888888777544 28889999999999999999999999877
Q ss_pred ---------ChHHHH----HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 454 ---------GYEVAQ----SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 454 ---------~~~~a~----~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
++..++ ++.|.++.. .+++++|+..|++|++..
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~----------------lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDG----------------LGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHH----------------CCCHHHHHHHHHHHHhcC
Confidence 577889 999999998 778999999999999753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=96.90 Aligned_cols=136 Identities=17% Similarity=0.050 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh----------------hHH
Q 009801 296 ERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA----------------GGH 355 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~----------------~a~ 355 (525)
.++++++...++...+. ..+..+..+|..+.. .+++++|+.+|+++++. .++ .++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 34444444444333221 234455666666654 34666666666666654 222 677
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWA 431 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 431 (525)
+++|.+|.. .+++++|+.+++++++. .++.+++.+|.+|.. .+++++|+.+|+++++..| ..++..++
T Consensus 92 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 92 LNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 788888888 88888888888888766 567788888888876 7888888888888877753 55666777
Q ss_pred HHHHhcCCHHHHH
Q 009801 432 LESYLKGDVGKAF 444 (525)
Q Consensus 432 ~~~~~~g~~~~A~ 444 (525)
.++...++.+++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 7776666665555
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=90.03 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH----------------HHHHHH
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ----------------KAFYQL 394 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~----------------~a~~~l 394 (525)
+++++.+.+....+. ..+..+..+|..+.. .+++++|+.+|+++++. .++ .++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 19 FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ---CCCSGGGCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 555555554433222 356678899999999 99999999999999986 333 889999
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
|.++.. .+++++|+.+++++++..+ ..+++.+|.++...|++++|+.+|+++++. +++.++.+++.++..
T Consensus 95 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 95 ATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 999998 9999999999999999874 778999999999999999999999999876 578899999999877
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=86.63 Aligned_cols=124 Identities=14% Similarity=0.082 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----CC----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc---
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----EE----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--- 385 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 385 (525)
++..+|.++.. .+++++|+.+++++++. ++ ..++..+|.+|.. .+++++|+.+++++++.
T Consensus 11 ~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 11 AFGNLGNTHYL-----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Confidence 34444444443 23555555555554433 11 2356667777777 77777777777776654
Q ss_pred -CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 386 -GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG----P----WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 386 -~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
++ ..++.++|.++.. .+++++|+.+++++++.. + ..++..+|.++...|++++|+.+++++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11 4567777888876 788888888888887542 1 34677889999999999999999998876
Q ss_pred c
Q 009801 453 L 453 (525)
Q Consensus 453 ~ 453 (525)
.
T Consensus 158 ~ 158 (164)
T 3ro3_A 158 I 158 (164)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.3e-09 Score=90.55 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHH-HHhcCCH--H
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALE-SYLKGDV--G 441 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~-~~~~g~~--~ 441 (525)
.+++++|+..++++++. .++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.+ +...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 67899999999999876 588999999999998 999999999999999886 47788899999 7799999 9
Q ss_pred HHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 442 KAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 442 ~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+|+.+++++++. +++.+++++|.++.. .+++++|+.+|+++++..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFM----------------QANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----------------cccHHHHHHHHHHHHhhC
Confidence 999999999986 578899999999998 778999999999999865
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-08 Score=79.05 Aligned_cols=108 Identities=10% Similarity=-0.024 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSS 426 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a 426 (525)
.+.+++.+|.++.. .+++++|+..|+++++. .++.++..+|.++.. .+++++|+.+++++++..+ ..+
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCcccHHH
Confidence 35677888888888 88888888888888876 577888888888887 8888899999988888764 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 427 LSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
+..+|.++...|++++|+.+++++++. +++.++..++.+.
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 788888888999999999999988876 4666777766554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-08 Score=79.10 Aligned_cols=109 Identities=27% Similarity=0.383 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+.+++.+|.++.. .+++++|+.+|+++++. ++..++..+|.++.. .+++++|+.+++++++..+ ..++
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHH
Confidence 5677888888888 88888888888888766 467788888888887 7888888888888887753 5677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
..+|.++...|++++|+.+++++++. .++.++.+++.++..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 78888888888999999888888776 467778888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-08 Score=78.98 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNA 462 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~l 462 (525)
.+.+++.+|..+.. .+++++|+.+|++++...+ +.++..+|.++...|++++|+.+++++++. .++.++.++
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T 1elw_A 3 QVNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 45678899999998 9999999999999998864 778889999999999999999999999986 478899999
Q ss_pred HHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 463 AWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
|.++.. .+++++|+.+|+++++.+ ++.++..++.+..
T Consensus 79 a~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 79 AAALEF----------------LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHH----------------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHH----------------HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999988 678999999999999875 7888888888753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-08 Score=90.21 Aligned_cols=176 Identities=10% Similarity=-0.005 Sum_probs=129.5
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCCCCCCHHHHH
Q 009801 230 FQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG----EPQSMEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 230 ~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
+..+++.+. +.++.+.+.+|.++... +++++|++++.+.++.+ +..+...++.++.. .++.+.|.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~-----g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~r~d~A~ 156 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAIL-----GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NNNVSTAS 156 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHc-----CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CCCHHHHH
Confidence 344444333 34567778999999887 49999999999998864 57888899999999 99999999
Q ss_pred HHHHHHHHcCC------HHHHHHHHHH--HHhCCCCCccCHHHHHHHHHHHHhCCCh--hHHHHHHHHHHcCCCCcCCHH
Q 009801 304 EWLTHAARQQL------YSAYNGIGYL--YVKGYGVEKKNYTKAKEYFEKAADNEEA--GGHYNLGVMYYKGIGVKRDVK 373 (525)
Q Consensus 304 ~~~~~a~~~~~------~~a~~~lg~~--~~~g~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~g~~~~~~~~ 373 (525)
+.+++..+... -.....|+.. ..... .+++++|...|+++.+.... .....+. ++.. +++++
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~----~g~~~ 228 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQ----QRNIA 228 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHH----HTCHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHH----cCCHH
Confidence 99998876654 4566666644 33211 23789999999998766421 2233333 7888 99999
Q ss_pred HHHHHHHHHHH------------cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH
Q 009801 374 LACKYFLVAAN------------AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428 (525)
Q Consensus 374 ~A~~~~~~a~~------------~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (525)
+|...+++..+ .+++.++.++..+... .++ +|.++++++.+..|..++.
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~----lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM----QGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH----TTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH----hCh--HHHHHHHHHHHhCCCChHH
Confidence 99999986543 5688888888777665 454 8889999999988755443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=84.65 Aligned_cols=95 Identities=12% Similarity=-0.085 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--C-------CH-----HHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--G-------HQ-----KAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~-------~~-----~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
+..+.++|..+.. .+++++|+..|++|++. . +. .++.++|.++.. .+++++|+.+|.+
T Consensus 11 a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 11 AYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 4556777888888 88888888888888876 3 22 389999999998 8999999999999
Q ss_pred HHHc-------CC--hHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 418 VAER-------GP--WSSL----SRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 418 a~~~-------~~--~~a~----~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
|++. +| ..++ +++|.++..+|++++|+..|++|++..
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9988 75 5678 999999999999999999999999873
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=81.74 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHh
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILD 467 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~ 467 (525)
+.+|..+.. .+++++|+..|+++++.+| +.+++.+|.++...|++++|+..|+++++. +++.+++++|.++.
T Consensus 21 ~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444443 4455555555555554432 444445555555555555555555555443 24445555555554
Q ss_pred h
Q 009801 468 K 468 (525)
Q Consensus 468 ~ 468 (525)
.
T Consensus 97 ~ 97 (121)
T 1hxi_A 97 N 97 (121)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-08 Score=81.33 Aligned_cols=112 Identities=19% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKA 390 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 390 (525)
+.++..+|..+.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++. .++.+
T Consensus 12 ~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 12 AERLKTEGNEQMK-----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccCHHH
Confidence 3444555555544 33556666666655543 345556666666666 66666666666666554 34556
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCC
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD 439 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~ 439 (525)
++.+|.++.. .+++++|+.+++++++..+ ..++..++.++...|+
T Consensus 83 ~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 83 YGRMGLALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666665 6666666666666666543 4455566666655554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=9.1e-09 Score=82.98 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHH
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSR 429 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~ 429 (525)
.++.+|..+.. .+++++|+..|+++++. +++.+++.+|.++.. .+++++|+..|+++++.+| ..+++.
T Consensus 19 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46788888888 88999999999998876 678889999999887 8899999999999988874 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 430 WALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+|.++...|++++|+.+++++++..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999888764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-08 Score=81.81 Aligned_cols=107 Identities=17% Similarity=0.026 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--P 423 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~ 423 (525)
++..++.+|..+.. .+++++|+.+|+++++.. + ..++.++|.++.. .+++++|+.+++++++.. +
T Consensus 27 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp CHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCccC
Confidence 44555566666666 666666666666655542 1 4555555555554 555555655555555554 2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
..+++.+|.++...|++++|+.+|+++++. ++..++..++.+
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 445555555555555555555555555544 234444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-08 Score=78.70 Aligned_cols=108 Identities=22% Similarity=0.227 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAA 463 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la 463 (525)
..+++.+|.++.. .+++++|+.+++++++..+ ..++..+|.++...|++++|+.+++++++. .++.++.++|
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 6788899999998 8999999999999998864 678889999999999999999999999876 5788999999
Q ss_pred HHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 464 WILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.++.. .+++++|+.+|+++++.. ++.++..+|.++.
T Consensus 85 ~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 85 NAYYK----------------QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHH----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHH----------------hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99988 678999999999998854 7899999999886
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-08 Score=84.80 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--------------------GHQKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
+..+..+|..+.. .+++++|+..|+++++. .+..++.++|.+|.. .+++++|
T Consensus 11 a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHH
Confidence 3445566666666 66666666666666554 345788999999988 8999999
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hH-HHHHHHHHHHhh
Q 009801 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YE-VAQSNAAWILDK 468 (525)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~-~a~~~la~~~~~ 468 (525)
+.+++++++.+| +.+++++|.++..+|++++|+.+|+++++.. ++ .+...++.+...
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999998874 7789999999999999999999999998874 44 445566665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.3e-08 Score=79.50 Aligned_cols=97 Identities=12% Similarity=-0.062 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
.++.+++.+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++.++ +.
T Consensus 7 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCchhHH
Confidence 467788899999999 99999999999998876 578889999999987 8999999999999998864 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+++.+|.++...|++++|+.+|+++++..
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 88899999999999999999999998763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-09 Score=108.68 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
..+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++.+| ..++
T Consensus 317 ~~~~~nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 317 LAAFLNLAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5788899999999 99999999999999887 678899999999998 8999999999999998874 5678
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 009801 428 SRWALESYLKGDVGKAFLL 446 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~ 446 (525)
..++.++...+++++|...
T Consensus 389 ~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999888887654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-08 Score=99.52 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC---------------HHHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH---------------QKAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
.+.++..+|..+.. .+++++|+..|+++++. .+ ..+++++|.+|.. .+++++|+.
T Consensus 267 ~a~~~~~~G~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~g~~~~A~~ 338 (457)
T 1kt0_A 267 QAAIVKEKGTVYFK----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK----LREYTKAVE 338 (457)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHH
Confidence 34455555555555 55666666666665543 22 6889999999998 999999999
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 414 LYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 414 ~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
+|+++++.++ ..+++++|.++..+|++++|+.+|++|++. ++..++.+++.++..
T Consensus 339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999874 789999999999999999999999999987 477799999999988
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-08 Score=79.98 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC------
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP------ 423 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~------ 423 (525)
+.+++.+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+++++++..+
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhH
Confidence 4567788888888 88888888888888876 467788888888887 8888888888888887642
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-ChHHHHHHHHHHHhh
Q 009801 424 ---WSSLSRWALESYLKGDVGKAFLLYSRMAEL-GYEVAQSNAAWILDK 468 (525)
Q Consensus 424 ---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~a~~~la~~~~~ 468 (525)
..+++.+|.++...|++++|+.+|+++++. .++.....++.+...
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 567788899999999999999999998876 356666777766544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-08 Score=79.41 Aligned_cols=108 Identities=19% Similarity=0.104 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--h-------H
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y-------E 456 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~-------~ 456 (525)
+.+++.+|..+.. .+++++|+.+|+++++..+ +.+++.+|.++...|++++|+.+++++++.. + +
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 4678889999987 9999999999999999864 6788899999999999999999999998763 3 7
Q ss_pred HHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Q 009801 457 VAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGDAYY 515 (525)
Q Consensus 457 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~ 515 (525)
.+++++|.++.. .+++++|+.+|+++++.. +++....++.++.
T Consensus 80 ~~~~~la~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 80 KAYARIGNSYFK----------------EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------hccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 789999999988 778999999999999865 7888888888775
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-08 Score=95.50 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 394 (525)
+..+..+|..+.. .+++++|+..|+++++...... . ..+.+++.. ....+..++.++
T Consensus 223 a~~~~~~g~~~~~-----~g~~~~Ai~~y~kAl~~~~~~~---------~----~~~~~~~~~-----~~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFK-----SQNWEMAIKKYTKVLRYVEGSR---------A----AAEDADGAK-----LQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHH---------H----HSCHHHHGG-----GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHhhcCc---------c----ccChHHHHH-----HHHHHHHHHHHH
Confidence 5566666666665 5567777777766664210000 0 011111110 112356677888
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
|.+|.. .+++++|+.+++++++.++ ..+++++|.++..+|++++|+.+|++|++. ++..++..++.++..
T Consensus 280 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 280 GACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHh----ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888887 8888888888888888763 677888888888888888888888888776 467777888887766
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.2e-07 Score=85.31 Aligned_cols=210 Identities=9% Similarity=-0.022 Sum_probs=148.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC-C-CHHHHHHHHHHHHHc
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVE-R-NYTKALEWLTHAARQ 312 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~-~-~~~~A~~~~~~a~~~ 312 (525)
.+|.+..++...+.+....+ .++++++.++.+++.. .+..++...+.++.. . + ++++++.++.++++.
T Consensus 83 ~nP~~ytaWn~R~~iL~~l~----~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~----l~~~~~~~EL~~~~k~L~~ 154 (349)
T 3q7a_A 83 MNPAHYTVWQYRFSLLTSLN----KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR----ISPQDPVSEIEYIHGSLLP 154 (349)
T ss_dssp HCTTCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----HCCSCCHHHHHHHHHHTSS
T ss_pred hCchhHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCCChHHHHHHHHHHHHh
Confidence 34567888888888887663 3699999999999875 678899999998887 4 5 788999999999877
Q ss_pred C--CHHHHHHHHHHHHhCCCC---CccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC-------HHHHHHH
Q 009801 313 Q--LYSAYNGIGYLYVKGYGV---EKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD-------VKLACKY 378 (525)
Q Consensus 313 ~--~~~a~~~lg~~~~~g~~~---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~-------~~~A~~~ 378 (525)
. +..++...+.+...-... ......+++.++.++++. .+..|+...+.++.. .+. +++++.+
T Consensus 155 dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~----l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS----RPGAETSSRSLQDELIY 230 (349)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT----STTCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccccccchHHHHHHHHH
Confidence 5 788888888877541000 011234899999999876 578899999999887 544 7899999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCcC----------------CHHHHHHHHHHHHHc--------CChHHHHHHHH
Q 009801 379 FLVAANA--GHQKAFYQLAKMFHTGVGLKK----------------NLHMATALYKLVAER--------GPWSSLSRWAL 432 (525)
Q Consensus 379 ~~~a~~~--~~~~a~~~l~~~y~~g~g~~~----------------~~~~A~~~~~~a~~~--------~~~~a~~~l~~ 432 (525)
+.+++.. ++..+++++..++..+..... ...+-.+.....+.. ..+.+...++.
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 9999876 788899888877765221100 122222222222221 23567788999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-ChHHH
Q 009801 433 ESYLKGDVGKAFLLYSRMAEL-GYEVA 458 (525)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~-~~~~a 458 (525)
+|...|+.++|...++...+. +....
T Consensus 311 ~~~~~~~~~~a~~~~~~l~~~~dpir~ 337 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEKLSSEYDQMRA 337 (349)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHhcCCHHHHHHHHHHHHhhhChHHH
Confidence 999999999999999998744 44333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-08 Score=83.90 Aligned_cols=109 Identities=15% Similarity=-0.070 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc------------------C--ChHHHHHHHHHHHhcCCHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER------------------G--PWSSLSRWALESYLKGDVGKAFLL 446 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~------------------~--~~~a~~~l~~~~~~~g~~~~A~~~ 446 (525)
.+..+...|..+.. .+++++|+..|+++++. + ...+++++|.++..+|++++|+.+
T Consensus 10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45678889999998 99999999999999987 2 246788999999999999999999
Q ss_pred HHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CH-HHHHHHHHHHH
Q 009801 447 YSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NE-HAALLIGDAYY 515 (525)
Q Consensus 447 ~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~-~a~~~lg~~y~ 515 (525)
++++++. .++.+++++|.++.. .+++++|+.+|+++++.. ++ .+...|+.+..
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~----------------~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIA----------------AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHH----------------HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999987 588999999999998 778999999999999875 55 45666766654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-07 Score=79.20 Aligned_cols=108 Identities=18% Similarity=0.043 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-----AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-- 385 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-- 385 (525)
.....++.+|..+.. .+++++|+.+|+++++... +.+++.+|.+|.. .+++++|+.+++++++.
T Consensus 26 ~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFK-----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp CCHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCc
Confidence 478899999999987 7799999999999998743 6789999999999 99999999999999987
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE 433 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 433 (525)
.++.+++.+|.++.. .+++++|+.+|+++++..+ ..+...++.+
T Consensus 97 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 97 GDVKALYRRSQALEK----LGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 578999999999998 9999999999999999875 4555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.2e-08 Score=78.60 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH---HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ---KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---- 423 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---- 423 (525)
.+++.+|.++.. .+++++|+..|+++++. +++ .+++.+|.++.. .+++++|+.+|+++++..|
T Consensus 3 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 3 RTAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCcc
Confidence 456777888888 88888888888887765 344 678888888877 7888888888888887653
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 -~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+.+++.+|.++...|++++|+.+|+++++.
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566778888888888888888888888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.83 E-value=7.1e-07 Score=83.24 Aligned_cols=233 Identities=11% Similarity=-0.019 Sum_probs=160.8
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCH
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
....|.|+.++....+....+.-...+.+.+.|...| ++... ..+.....+...++..+.. +
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg-----~~~~~------~~~~~~~~a~~~la~~~~~------~- 84 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALG-----QYQSQ------DPTSKLGKVLDLYVQFLDT------K- 84 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTT-----CCCCC------CSSSTTHHHHHHHHHHHTT------T-
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcC-----CCccC------CCCCHHHHHHHHHHHHhcc------c-
Confidence 3457888888875443222233445555666666553 22110 0111222344444444421 1
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC----ChhHHHHHHHHHHcCCCCcCCHH
Q 009801 300 TKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE----EAGGHYNLGVMYYKGIGVKRDVK 373 (525)
Q Consensus 300 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~~~~ 373 (525)
|+..+++.++. ....+...+|.++.. .|++++|++++.+.++.+ +.++...++.++.. .++.+
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~-----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~r~d 153 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAI-----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NNNVS 153 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TTCHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CCCHH
Confidence 78888888765 366777899999987 679999999999998764 67788999999999 99999
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHH--HHcCCCCcCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCHHHH
Q 009801 374 LACKYFLVAANAGH------QKAFYQLAKM--FHTGVGLKKNLHMATALYKLVAERGPW--SSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 374 ~A~~~~~~a~~~~~------~~a~~~l~~~--y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~l~~~~~~~g~~~~A 443 (525)
.|.+.+++..+... ......|+.. ...- ..+++.+|...|+++.+..+. .....+. ++..+|++++|
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~--g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eA 230 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT--NKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHH
Confidence 99999999877754 4555666544 3220 034899999999998877653 2333334 79999999999
Q ss_pred HHHHHHHHH------------cChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 444 FLLYSRMAE------------LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 444 ~~~~~~a~~------------~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
...+++..+ .+++.++.|+..+....| + +|.++++++.+..
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg----------------k--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG----------------L--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT----------------C--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC----------------h--HHHHHHHHHHHhC
Confidence 999987654 568999989888887732 2 5778888887754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.6e-08 Score=79.40 Aligned_cols=110 Identities=15% Similarity=-0.010 Sum_probs=94.4
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHH
Q 009801 385 AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQS 460 (525)
Q Consensus 385 ~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~ 460 (525)
..++..++.+|..+.. .+++++|+.+|+++++..+ +.+++.+|.++...|++++|+.+++++++. +++.+++
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3568889999999998 9999999999999999874 678899999999999999999999999986 5788999
Q ss_pred HHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-------CHHHHHHHHHHH
Q 009801 461 NAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-------NEHAALLIGDAY 514 (525)
Q Consensus 461 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~y 514 (525)
++|.++.. .+++++|+.+|+++++.. +..+...+..+.
T Consensus 82 ~l~~~~~~----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 82 FLGQCQLE----------------MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHH----------------HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999998 678999999999998743 344555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-09 Score=108.54 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
.+++++|+.+|+++++. .++.++.++|.+|.. .+++++|+.+++++++.++ ..+++++|.++..+|++++|+
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555544 345555555555554 5555555555555555542 445555555555555555555
Q ss_pred HHHHHHHHc--ChHHHHHHHHHH
Q 009801 445 LLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 445 ~~~~~a~~~--~~~~a~~~la~~ 465 (525)
.+|+++++. ++..++.+++.+
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555544 234455555554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.9e-07 Score=84.56 Aligned_cols=219 Identities=9% Similarity=-0.056 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCC----------HHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERN----------YTKALEWLTHAARQQ--LYSAYNGIGYLYVK 327 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~----------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 327 (525)
-.++|+.++.+++.. .+..+++.-+.+... .+. +++++.++..++..+ +..++..-+.++..
T Consensus 45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~----l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 45 LDESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH----hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 345799999999876 678899988888876 333 688999999998764 89999999999876
Q ss_pred CCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 009801 328 GYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD-VKLACKYFLVAANA--GHQKAFYQLAKMFHTGV 402 (525)
Q Consensus 328 g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~ 402 (525)
- ...++++++.++.++++. .+..++...+++... .+. .++++.++.++++. .+..++.+.+.++..-.
T Consensus 121 l---~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 121 L---PEPNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp C---SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred c---CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 1 112589999999999876 578899999999988 777 69999999999987 68999999998876521
Q ss_pred C----------CcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcChHHHH
Q 009801 403 G----------LKKNLHMATALYKLVAERGP--WSSLSRWALESYLK-----------GDVGKAFLLYSRMAELGYEVAQ 459 (525)
Q Consensus 403 g----------~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~-----------g~~~~A~~~~~~a~~~~~~~a~ 459 (525)
. ..+.++++++++.+++..+| ..+++.+.+++... +.+++++.++++.++..+...+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 0 11568999999999999875 67786555555544 4589999999999987544455
Q ss_pred HHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 460 SNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 460 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
..++.+...-+ + ...+..++...++.+.++.+
T Consensus 274 ~l~~~~~~~~~-----~------~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 274 CLLTIILLMRA-----L------DPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHH-----H------CTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh-----h------cccccHHHHHHHHHHHHHhC
Confidence 55555443200 0 01345678999999988776
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-07 Score=96.48 Aligned_cols=173 Identities=8% Similarity=-0.084 Sum_probs=142.3
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~ 400 (525)
-.++|+.++.+++.. .+..+|+..+.++.. .++ +++++.++.++++. .+..++++.+.++..
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456888888888866 577888888888887 666 89999999999987 688999999999987
Q ss_pred CCCCcC--CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCc
Q 009801 401 GVGLKK--NLHMATALYKLVAERG--PWSSLSRWALESYLKG-DVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGS 473 (525)
Q Consensus 401 g~g~~~--~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g-~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~ 473 (525)
.+ +++++++++.++++.+ +..++...+++....| .+++++.+++++++. .+..|+++.+.++...+...
T Consensus 120 ----l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 ----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred ----cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 66 7799999999999997 4779999999999999 999999999999987 58999999999998853210
Q ss_pred cccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcc
Q 009801 474 MCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYYYG 517 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g 517 (525)
..+..+ ....+.+++|++++.+|++.+ +..+++.++.++..+
T Consensus 196 -~~~~~~-~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 196 -DSGPQG-RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp -CSSSCC-SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred -cccccc-cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 000001 123688999999999999854 788999999998754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-08 Score=77.38 Aligned_cols=97 Identities=15% Similarity=0.046 Sum_probs=79.6
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---- 423 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---- 423 (525)
+++.+++.+|.++.. .+++++|+.+|+++++. .+..++..+|.++.. .+++++|+.+++++++..+
T Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 4 QNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp SSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSCCTTC
T ss_pred CcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccch
Confidence 456777888888888 88888888888888876 567888888888887 8888888888888888753
Q ss_pred hHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 009801 424 WSSLSRWALESYLK-GDVGKAFLLYSRMAELG 454 (525)
Q Consensus 424 ~~a~~~l~~~~~~~-g~~~~A~~~~~~a~~~~ 454 (525)
..++..+|.++... |++++|+.++++++...
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 46778888888888 88888888888887763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=97.74 Aligned_cols=148 Identities=10% Similarity=-0.013 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQ 393 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 393 (525)
.+..+..+|..+.. .+++++|+.+|+++++...... .+.. .++..++...+. ..++++
T Consensus 178 ~a~~~~~~g~~~~~-----~g~~~~A~~~y~~Al~~~p~~~------~~~~----~~~~~~~~~~l~-------~~~~~n 235 (338)
T 2if4_A 178 AADRRKMDGNSLFK-----EEKLEEAMQQYEMAIAYMGDDF------MFQL----YGKYQDMALAVK-------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHHHTCS-----SSCCHHHHHHHHHHHHHSCHHH------HHTC----CHHHHHHHHHHH-------THHHHH
T ss_pred HHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHhccch------hhhh----cccHHHHHHHHH-------HHHHHH
Confidence 47788888888866 6799999999999887654433 1233 445555544332 247889
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
+|.+|.. .+++++|+.+|+++++.++ ..+++++|.++..+|++++|+.+|+++++. +++.++.+++.+....
T Consensus 236 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 236 IAACLIK----LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHT----TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 9999997 8999999999999999874 778999999999999999999999999765 5777888888775442
Q ss_pred CCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.+..+++...|++++...
T Consensus 312 ---------------~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 312 ---------------KALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp ---------------------------------
T ss_pred ---------------HHHHHHHHHHHHHhhCCC
Confidence 456678888888887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-06 Score=83.22 Aligned_cols=212 Identities=11% Similarity=-0.049 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCcc-C
Q 009801 262 DRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER-NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKK-N 335 (525)
Q Consensus 262 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~-~ 335 (525)
..++|+.++.+++.. .+..+++..+.++.. .+ ++++++.++.+++... +..++...+.++.... + +
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~----l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~----~~~ 140 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTS----LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS----PQD 140 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC----CSC
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc----CCC
Confidence 567899999999876 678999999999988 66 6999999999999875 8999999999987621 3 6
Q ss_pred HHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHH--------HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC
Q 009801 336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVK--------LACKYFLVAANA--GHQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 336 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~--------~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g 403 (525)
+++++.++.++++. .+..++...+++... .+.++ +++.+++++++. .+..|+.+.+.++..-..
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 78999999999987 478899999999887 66665 999999999987 688999999999876211
Q ss_pred ---CcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHH------
Q 009801 404 ---LKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDV--------------------GKAFLLYSRMAE------ 452 (525)
Q Consensus 404 ---~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~--------------------~~A~~~~~~a~~------ 452 (525)
....++++++++++++..+| ..+++.+..++...|+- .+-.......+.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 11127999999999999874 67888888878776653 111111111111
Q ss_pred --cChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 453 --LGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 453 --~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
...+.|+.-++.+|.. .++.++|.+.++...+.
T Consensus 297 ~~~~s~~al~~l~d~~~~----------------~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIE----------------QNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHhh
Confidence 2467788889999987 55678999999987644
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-08 Score=77.95 Aligned_cols=98 Identities=11% Similarity=-0.126 Sum_probs=88.6
Q ss_pred CCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC-
Q 009801 81 DPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG- 157 (525)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 157 (525)
+|+++.+++.+|..+.. .+++++|+.+++++. .+.++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 2 ~p~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~ 70 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD-------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVI 70 (112)
T ss_dssp CCSSTTGGGGHHHHHHS-------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence 57788999999999886 788999999999975 56789999999999998 89999999999999874
Q ss_pred -C--CHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Q 009801 158 -G--NIQSKMAVAYTYLRQ-DMHDKAVKLYAELAEI 189 (525)
Q Consensus 158 -~--~~~a~~~la~~y~~~-~~~~~A~~~y~~~~~~ 189 (525)
. +..++..+|.++... +++++|++++++++..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5 789999999999999 9999999999998654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-07 Score=76.61 Aligned_cols=94 Identities=20% Similarity=0.233 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CCh---hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CC--
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEA---GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GH-- 387 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~-- 387 (525)
+++.+|..+.. .+++++|+..|+++++. +++ .+++.+|.+|.. .+++++|+.+|+++++. ++
T Consensus 4 ~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 4 TAYNVAFDALK-----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHH-----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCcc
Confidence 34555555554 34666666666666543 233 466666666666 66666666666666654 34
Q ss_pred -HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 388 -QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 388 -~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
+.+++++|.++.. .+++++|+.+|+++++..|
T Consensus 75 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 75 AAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCC
Confidence 5666666766665 6667777777777666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=92.56 Aligned_cols=136 Identities=17% Similarity=0.101 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 358 (525)
+..+..+|..+.. .+++++|+..|+++++...... .. . +.+++.. .+..++.++.++
T Consensus 223 a~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~--------~~-----~-~~~~~~~-----~~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSR--------AA-----A-EDADGAK-----LQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHH--------HH-----S-CHHHHGG-----GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCc--------cc-----c-ChHHHHH-----HHHHHHHHHHHH
Confidence 3456778888888 8899999999998876311000 00 0 1111111 112345566777
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHH
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES 434 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 434 (525)
|.+|.. .+++++|+.+++++++. +++.+++++|.+|.. .+++++|+.+|+++++..+ ..+...++.++
T Consensus 280 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 280 GACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHh----ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777 77777777777777765 466777777777776 6777777777777776653 45666667766
Q ss_pred HhcCCHHHHHH
Q 009801 435 YLKGDVGKAFL 445 (525)
Q Consensus 435 ~~~g~~~~A~~ 445 (525)
...++++++..
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-08 Score=79.19 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHH
Q 009801 369 KRDVKLACKYFLVAANAG-----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVG 441 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~ 441 (525)
.+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+|+++++..| +.+++.+|.++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 455555666666655542 23455555665555 5566666666666655542 445555666666666666
Q ss_pred HHHHHHHHHHHc
Q 009801 442 KAFLLYSRMAEL 453 (525)
Q Consensus 442 ~A~~~~~~a~~~ 453 (525)
+|+.+++++++.
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-08 Score=95.80 Aligned_cols=144 Identities=12% Similarity=0.038 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHH
Q 009801 280 QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLG 359 (525)
Q Consensus 280 ~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 359 (525)
..+..+|..+.. .+++++|+.+|++++........ +.. .+++.++...+. ..+++++|
T Consensus 180 ~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~------~~~-----~~~~~~~~~~l~-------~~~~~nla 237 (338)
T 2if4_A 180 DRRKMDGNSLFK----EEKLEEAMQQYEMAIAYMGDDFM------FQL-----YGKYQDMALAVK-------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHTCS----SSCCHHHHHHHHHHHHHSCHHHH------HTC-----CHHHHHHHHHHH-------THHHHHHH
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccchh------hhh-----cccHHHHHHHHH-------HHHHHHHH
Confidence 334555666655 66666666666666655432221 100 123333333221 23556666
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHH-H
Q 009801 360 VMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALE-S 434 (525)
Q Consensus 360 ~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~-~ 434 (525)
.+|.. .+++++|+.+|+++++. ++..+++++|.+|.. .+++++|+.+|+++++..+ ..++..++.+ .
T Consensus 238 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 238 ACLIK----LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHT----TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 66666 66666666666666554 355666666666665 6666666666666655543 3444455544 2
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 009801 435 YLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 435 ~~~g~~~~A~~~~~~a~~~ 453 (525)
...+..+++...|.+++..
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3344555555566555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-09 Score=106.22 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHH
Q 009801 282 MEFLGEIYARGAGVERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYN 357 (525)
Q Consensus 282 ~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 357 (525)
+..+|.++.. .+++++|+.+|+++++.. ++.++.++|.+|.. .+++++|+.+++++++. +++.++++
T Consensus 9 ~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~l~p~~~~~~~~ 79 (477)
T 1wao_1 9 LKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-----TECYGYALGDATRAIELDKKYIKGYYR 79 (477)
T ss_dssp SSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445555665 777888888888877653 67777788887776 45788888888887766 46677788
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HHcCCCCcCCHHHHHHHHH
Q 009801 358 LGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKM--FHTGVGLKKNLHMATALYK 416 (525)
Q Consensus 358 lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~--y~~g~g~~~~~~~A~~~~~ 416 (525)
+|.+|.. .+++++|+.+|+++++. ++..++.+++.+ +.. .+++++|++.++
T Consensus 80 lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 8888888 88888888888887766 456677777776 555 677888888887
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.7e-07 Score=92.13 Aligned_cols=128 Identities=9% Similarity=-0.053 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcC--CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcC-CH
Q 009801 336 YTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR--DVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKK-NL 408 (525)
Q Consensus 336 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~--~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~-~~ 408 (525)
+++++.++.++++. .+..+|+..++++.. .+ ++++++.++.++++. .+..++.+.+.+... .+ .+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~----l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~ 160 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSR----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAP 160 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCCh
Confidence 77888888888765 477888888888888 77 679999999998877 578888888888876 55 78
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhC
Q 009801 409 HMATALYKLVAERG--PWSSLSRWALESYLK--------------GDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYG 470 (525)
Q Consensus 409 ~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~ 470 (525)
+++++++.++++.+ +..|+...+.++... +.+++|++++.+|+.. ++..+++.++.++...+
T Consensus 161 ~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 89999999998886 477888888887764 5689999999999876 68899999999997744
Q ss_pred C
Q 009801 471 E 471 (525)
Q Consensus 471 ~ 471 (525)
.
T Consensus 241 ~ 241 (567)
T 1dce_A 241 P 241 (567)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00014 Score=76.01 Aligned_cols=370 Identities=7% Similarity=-0.048 Sum_probs=192.8
Q ss_pred CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCC---HHHHHHHHHHH
Q 009801 80 IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERN---KGKAFLYHHFA 154 (525)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d---~~~A~~~~~~a 154 (525)
.+|.+..+...+...... .++++.+...|+++. -|.....+......-.. .++ .+.+...|++|
T Consensus 61 ~np~d~~~W~~yi~~~~~-------~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~----~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVS-------LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFD----KMEELDAAVIEPVLARC 129 (679)
T ss_dssp HCTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----C--CCCHHHHHHHHHHH
T ss_pred HCcCCHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----hCCcchHHHHHHHHHHH
Confidence 455666666666665443 457899999999965 45677777777666554 445 99999999999
Q ss_pred HcC----CCHHHHHHHHHHHhccccH--------HHHHHHHHHHHHHHHh-hhhccCCCCCchhhhhcccchhhhhHhh-
Q 009801 155 AEG----GNIQSKMAVAYTYLRQDMH--------DKAVKLYAELAEIAVN-SFLISKDSPVIEPIRIHNGAEENKGALR- 220 (525)
Q Consensus 155 ~~~----~~~~a~~~la~~y~~~~~~--------~~A~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (525)
+.. .++.............++. +.....|++++..-.. +. .. . .++.......
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~----~s-----~----~iW~~Yi~f~~ 196 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP----KS-----I----QFWNEYLHFLE 196 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS----SC-----H----HHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc----cc-----h----HHHHHHHHHHH
Confidence 874 3555544444333333332 3344667766643111 00 00 0 0010000000
Q ss_pred --------hccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhc-CC--------CCccCHHHHHHHHHHHHh------
Q 009801 221 --------KSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFG-LR--------GLRRDRTKALMWFSKAAD------ 275 (525)
Q Consensus 221 --------~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~-~~--------~~~~~~~~A~~~~~~a~~------ 275 (525)
..+++.+.+.++|++++.. ...+-.+..=..+... +. ....++..|..+++..-.
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHh
Confidence 0122345566666665432 1111111000000000 00 001234444444443111
Q ss_pred cC-------------------C-HHHHHHHHHHH-HcCCC--CCC--CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC
Q 009801 276 KG-------------------E-PQSMEFLGEIY-ARGAG--VER--NYTKALEWLTHAARQQ--LYSAYNGIGYLYVKG 328 (525)
Q Consensus 276 ~~-------------------~-~~a~~~Lg~~y-~~g~~--~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g 328 (525)
.. . .........+- ....+ +.. ..+.....|++++... .++.+...+.+...
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~- 355 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE- 355 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-
Confidence 00 0 11111111111 11111 000 1334556777777653 67777777777765
Q ss_pred CCCCccCHHHHH-HHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-------------------
Q 009801 329 YGVEKKNYTKAK-EYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG------------------- 386 (525)
Q Consensus 329 ~~~~~~~~~~A~-~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------------------- 386 (525)
.++.++|. ..|++|+... +...+..++.+... .++.++|...|+++++..
T Consensus 356 ----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~----~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 356 ----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL----NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp ----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 33556775 7888887642 34445667777777 777888888888777531
Q ss_pred -----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc--Ch
Q 009801 387 -----HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-G--PWSSLSRWALESYLKG-DVGKAFLLYSRMAEL--GY 455 (525)
Q Consensus 387 -----~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-~--~~~a~~~l~~~~~~~g-~~~~A~~~~~~a~~~--~~ 455 (525)
....+...+.+... .++.+.|...|.+|++. . ....+...+.+.+..+ +.+.|...|+++++. .+
T Consensus 428 ~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 11223333333333 56778888888888766 3 2445555555555554 478888888888775 34
Q ss_pred HHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 456 EVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 456 ~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+..+..++.+... .++.+.|..+|++|+...
T Consensus 504 ~~~w~~y~~fe~~----------------~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 504 GEYINKYLDFLIY----------------VNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHHHHH----------------HTCHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHhc
Confidence 4444445554444 446677888888887654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=9.8e-08 Score=79.28 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD----------VKLACKYFLVAANA--GHQKAFYQLAKMFHT 400 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~ 400 (525)
.+++|++.++++++. +++++++++|.++.. .++ +++|+..|++|+++ ++..+++++|.+|..
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 677888888888765 577888888888877 554 45888888888877 578888888888875
Q ss_pred CCCCc-----------CCHHHHHHHHHHHHHcCChHH
Q 009801 401 GVGLK-----------KNLHMATALYKLVAERGPWSS 426 (525)
Q Consensus 401 g~g~~-----------~~~~~A~~~~~~a~~~~~~~a 426 (525)
. +++++|+.+|++|++++|...
T Consensus 93 ----lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 ----FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp ----HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ----hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3 489999999999999887643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=75.45 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=73.5
Q ss_pred ccCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 009801 333 KKNYTKAKEYFEKAADNE-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~ 405 (525)
.|++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++++|.++.. .
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN----L 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----c
Confidence 468999999999999873 45789999999999 99999999999999987 689999999999998 9
Q ss_pred CCHHHHHHHHHHHHHcCCh
Q 009801 406 KNLHMATALYKLVAERGPW 424 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~~ 424 (525)
+++++|+.+++++++..+.
T Consensus 75 g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999988643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=4e-07 Score=75.63 Aligned_cols=93 Identities=10% Similarity=0.021 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhC
Q 009801 405 KKNLHMATALYKLVAERGP--WSSLSRWALESYLKGD----------VGKAFLLYSRMAEL--GYEVAQSNAAWILDKYG 470 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~----------~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~ 470 (525)
.+.+++|+..++++++.+| +++++++|.++...++ +++|+..|++|++. ++..+++++|.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3467888888888888864 6778888888888776 46999999999987 58899999999998743
Q ss_pred CCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 471 EGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
... .+.....+++++|+.+|++|++.+
T Consensus 95 ~l~-----P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLT-----PDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHC-----CCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccC-----cchhhhhccHHHHHHHHHHHHHhC
Confidence 210 000111369999999999999866
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-07 Score=74.92 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--Ch------HHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GY------EVA 458 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~------~~a 458 (525)
.+++.+|.++.. .+++++|+.+|+++++..| +.+++++|.++...|++++|+.+++++++. ++ ..+
T Consensus 5 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 5 EKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 344455555554 5555555555555555442 344455555555555555555555555544 22 445
Q ss_pred HHHHHHHHhhhC
Q 009801 459 QSNAAWILDKYG 470 (525)
Q Consensus 459 ~~~la~~~~~~~ 470 (525)
++++|.++...|
T Consensus 81 ~~~~~~~~~~~~ 92 (111)
T 2l6j_A 81 QYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=67.04 Aligned_cols=80 Identities=15% Similarity=-0.002 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
..+++.+|.+++..|++++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|+++++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----------------~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----------------LGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------------hcCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999986 578999999999998 77899999999999986
Q ss_pred C--C------HHHHHHHHHHHHccccc
Q 009801 502 G--N------EHAALLIGDAYYYGRVR 520 (525)
Q Consensus 502 ~--~------~~a~~~lg~~y~~g~g~ 520 (525)
. + ..+++.+|.++. ..|.
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~-~~~~ 93 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQG-AVGS 93 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHH-HHHC
T ss_pred CCCccHHHHHHHHHHHHHHHHH-HHHh
Confidence 5 5 789999999987 4553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.5e-06 Score=66.05 Aligned_cols=76 Identities=9% Similarity=0.020 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009801 374 LACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSR 449 (525)
Q Consensus 374 ~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~ 449 (525)
+|+..|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++.++ ..+++.+|.++...|++++|+.+|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677777665 567777777777776 7778888888888777754 56777788888888888888888888
Q ss_pred HHHc
Q 009801 450 MAEL 453 (525)
Q Consensus 450 a~~~ 453 (525)
+++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-06 Score=63.05 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAA 463 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la 463 (525)
+.+++.+|.++.. .+++++|+.+|+++++..+ ..+++.+|.++...|++++|+.+++++++. +++.++.++|
T Consensus 9 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4566677777776 7777777777777777653 556777777777777777777777777765 4667777777
Q ss_pred HHHhh
Q 009801 464 WILDK 468 (525)
Q Consensus 464 ~~~~~ 468 (525)
.++..
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-06 Score=62.91 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHH
Q 009801 352 AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSL 427 (525)
Q Consensus 352 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 427 (525)
+.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+++++++.+| ..++
T Consensus 9 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 4566677777777 77777777777777665 456677777777776 7777777777777777653 5566
Q ss_pred HHHHHHHHhc
Q 009801 428 SRWALESYLK 437 (525)
Q Consensus 428 ~~l~~~~~~~ 437 (525)
..+|.++...
T Consensus 81 ~~l~~~~~~~ 90 (91)
T 1na3_A 81 QNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6667666544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-06 Score=64.44 Aligned_cols=80 Identities=19% Similarity=0.089 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----ChHHH
Q 009801 385 AGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYEVA 458 (525)
Q Consensus 385 ~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~a 458 (525)
.+++.+++.+|.+|.. .+++++|+.+|+++++.+| +.+++.+|.++...|++++|+.+|+++++. ++..+
T Consensus 4 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp -CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred ccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 3577888888888887 8889999999998888864 678888899999999999999999888865 45555
Q ss_pred HHHHHHHHhh
Q 009801 459 QSNAAWILDK 468 (525)
Q Consensus 459 ~~~la~~~~~ 468 (525)
...+..++..
T Consensus 80 ~~~l~~~l~~ 89 (100)
T 3ma5_A 80 LSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556655544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5.8e-06 Score=63.66 Aligned_cols=80 Identities=11% Similarity=0.107 Sum_probs=64.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--- 312 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--- 312 (525)
+|+++.+++.+|.+|...+ ++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHD-----NASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhhc
Confidence 5688999999999998884 999999999999875 678899999999999 99999999999999864
Q ss_pred -CCHHHHHHHHHHHH
Q 009801 313 -QLYSAYNGIGYLYV 326 (525)
Q Consensus 313 -~~~~a~~~lg~~~~ 326 (525)
++......+..++.
T Consensus 74 ~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 74 EGTQKDLSELQDAKL 88 (100)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHH
Confidence 35555555555553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=79.08 Aligned_cols=118 Identities=6% Similarity=-0.017 Sum_probs=93.7
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C-
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLVAANA-------GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-----G- 422 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-----~- 422 (525)
+..+.. ++++++|+..|+++++. +| ..++.+||.+|.. .+++++|+.+++++++. +
T Consensus 316 a~~~~~----qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~ 387 (490)
T 3n71_A 316 IDKARS----EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHH 387 (490)
T ss_dssp HHHHHT----TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCC
Confidence 344566 88999999999998864 23 4678899999988 89999999999999865 2
Q ss_pred -C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--hHH---HHHHHHHHHhhhCCCccccCCCCCCCChHhH
Q 009801 423 -P---WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----G--YEV---AQSNAAWILDKYGEGSMCMGESGFCTDAERH 488 (525)
Q Consensus 423 -~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~--~~~---a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (525)
+ ...+.+||.+|..+|++++|+.+|++|++. | ++. ...+++.++.. ++.+
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----------------~~~~ 451 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----------------LRMF 451 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----------------HHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----------------HHHH
Confidence 2 446789999999999999999999999853 2 333 45667777766 7789
Q ss_pred HHHHHHHHHHHh
Q 009801 489 QCAHSLWWQASE 500 (525)
Q Consensus 489 ~~A~~~~~~a~~ 500 (525)
++|...|+++.+
T Consensus 452 ~~ae~~~~~~~~ 463 (490)
T 3n71_A 452 RQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.1e-06 Score=64.53 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHH
Q 009801 338 KAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATA 413 (525)
Q Consensus 338 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~ 413 (525)
+|+..|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++++|.++.. .+++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence 466777777665 467777888888887 78888888888887766 567777888888876 778888888
Q ss_pred HHHHHHHcC
Q 009801 414 LYKLVAERG 422 (525)
Q Consensus 414 ~~~~a~~~~ 422 (525)
+|+++++..
T Consensus 75 ~~~~al~~~ 83 (115)
T 2kat_A 75 AWESGLAAA 83 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.8e-06 Score=81.49 Aligned_cols=112 Identities=7% Similarity=-0.025 Sum_probs=91.6
Q ss_pred ccCHHHHHHHHHHHHhC-------CC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHH
Q 009801 333 KKNYTKAKEYFEKAADN-------EE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA-------GH---QKAFY 392 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~ 392 (525)
+|++++|+.+++++++. ++ ..++.+||.+|.. ++++++|..+++++++. +| ..+++
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56899999999988754 23 4577899999999 99999999999998864 23 45788
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C--C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 393 QLAKMFHTGVGLKKNLHMATALYKLVAER-----G--P---WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 393 ~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-----~--~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
+||.+|.. .|++++|+.+|++|++. | + ......++.++..++.+++|...|.++.+
T Consensus 398 nLa~~~~~----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWH----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 99999999999999865 3 2 33456788889999999999999998865
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00017 Score=75.45 Aligned_cols=205 Identities=10% Similarity=0.034 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHH-HHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 228 EAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKAL-MWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 228 ~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~-~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
.....|++++.. .+++.++..+......+ +.++|. ..|++|+.. .+...+..++.+... .++.++|
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~-----~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~----~~~~e~a 397 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKN-----TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL----NTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS-----CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHH
Confidence 345678887654 78999999999988774 667897 999999975 455667788888888 8899999
Q ss_pred HHHHHHHHHcC------------------------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-C--ChhHH
Q 009801 303 LEWLTHAARQQ------------------------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN-E--EAGGH 355 (525)
Q Consensus 303 ~~~~~~a~~~~------------------------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~-~--~~~a~ 355 (525)
...|++++... ...++.....+... .++.+.|...|.+|++. . ....+
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-----~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-----IQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999998641 11234444444443 35889999999999976 3 35566
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCh-----HHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPW-----SSLS 428 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-----~a~~ 428 (525)
...+.+-... .++.+.|...|+++++. .++..+...+..... .++.+.|..+|++|+...+. ..+.
T Consensus 473 i~~A~lE~~~---~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 473 LENAYIEYHI---SKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp HHHHHHHHTT---TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666665551 34589999999999987 456555556665555 78999999999999988652 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.....-...|+.+.+...++++.+.
T Consensus 546 ~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 546 KVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444555789999999999999876
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-05 Score=60.75 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYE 456 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~ 456 (525)
+..++.+|..+.. .+++..|+.||++|++.. ....+..+|.+++.+|++++|+.+++++++. +++
T Consensus 5 a~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 4556777777776 777777777777777541 2556788999999999999999999999865 577
Q ss_pred HHHHHHHH
Q 009801 457 VAQSNAAW 464 (525)
Q Consensus 457 ~a~~~la~ 464 (525)
.+..|+++
T Consensus 81 ~~~~n~~~ 88 (104)
T 2v5f_A 81 RANGNLKY 88 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHHH
Confidence 77777773
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.1e-05 Score=58.76 Aligned_cols=72 Identities=10% Similarity=-0.076 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAEL---------GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (525)
+..++.+|..++..|+|..|+.||++|++. ..+..+.+||.++++ .+++++|+.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----------------~g~~~~A~~~ 68 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----------------QGDLDKALLL 68 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----------------ccCHHHHHHH
Confidence 566789999999999999999999999874 257789999999999 6689999999
Q ss_pred HHHHHhC--CCHHHHHHHH
Q 009801 495 WWQASEQ--GNEHAALLIG 511 (525)
Q Consensus 495 ~~~a~~~--~~~~a~~~lg 511 (525)
++++++. +++.++.+++
T Consensus 69 ~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 69 TKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHhhHH
Confidence 9999875 4788888877
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0076 Score=60.77 Aligned_cols=361 Identities=11% Similarity=-0.061 Sum_probs=199.0
Q ss_pred CCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhc-CChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc-----
Q 009801 83 GAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAME-GDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE----- 156 (525)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~----- 156 (525)
..+++.|..+...+- .++++.+...|+++... .+.+.+......-.. . ....+.....|+.|+.
T Consensus 12 ~~aR~vyer~l~~~P-------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~-~--~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 12 SSPSAIMEHARRLYM-------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRK-V--SQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH-H--C----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-h--CchHHHHHHHHHHHHHHcCCC
Confidence 446667777776663 37899999999998753 355555444333222 1 1134556777888875
Q ss_pred CCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhccc------chhhhhHhhhccCCc
Q 009801 157 GGNIQSKMAVAYTYLR----QDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNG------AEENKGALRKSRGED 226 (525)
Q Consensus 157 ~~~~~a~~~la~~y~~----~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 226 (525)
..+..........+.. +++.+.+...|++++...... .-.-...+.. .......+....+.+
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~--------~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y 153 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGS--------LSELWKDFENFELELNKITGKKIVGDTLPIF 153 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT--------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhh--------HHHHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence 2455666666666543 467888999999987521000 0000000000 000001111112233
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCcc--CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCCH
Q 009801 227 DEAFQILEYQAQK---GNAGAMYKIGLFYYFGLRGLRR--DRTKALMWFSKAAD--KGEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 227 ~~A~~~~~~~~~~---~~~~a~~~Lg~~y~~~~~~~~~--~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
..|...++..... .....+......-.....+... ..+.....|++++. ...+..|...+..+.. .++.
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~ 229 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCH
Confidence 4444444443321 1232333333222111001111 14567789999988 4678899999999888 8999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC------------CChhHHHHHHHHHHcCCC
Q 009801 300 TKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN------------EEAGGHYNLGVMYYKGIG 367 (525)
Q Consensus 300 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~lg~~y~~g~~ 367 (525)
++|...|++|+.. .......+...... .. ++...-+.++... .....+...+....+
T Consensus 230 ~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r--- 298 (493)
T 2uy1_A 230 EKAKKVVERGIEM-SDGMFLSLYYGLVM----DE---EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK--- 298 (493)
T ss_dssp HHHHHHHHHHHHH-CCSSHHHHHHHHHT----TC---THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHhhc----ch---hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH---
Confidence 9999999999987 22222222222211 01 1111111111100 112445666667667
Q ss_pred CcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHH
Q 009801 368 VKRDVKLACKYFLVAANAG--HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKA 443 (525)
Q Consensus 368 ~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A 443 (525)
.++.+.|...|++| ... ....+...+.+-.. ..++.+.|...|+++++..+ +..+...+......|+.+.|
T Consensus 299 -~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 299 -KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp -HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred -cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77899999999999 432 23334333444332 13479999999999998653 34444556667788999999
Q ss_pred HHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 444 FLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 444 ~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
...|+++. .....+.....+-..+ |+.+.+...++++.
T Consensus 374 R~l~er~~--k~~~lw~~~~~fE~~~----------------G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 374 RALFKRLE--KTSRMWDSMIEYEFMV----------------GSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSC--CBHHHHHHHHHHHHHH----------------SCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH
Confidence 99999983 2344444444444443 34556666666665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00014 Score=66.23 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=84.2
Q ss_pred CCChhHHHHHHHHHHcC-------CCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCC-CcCCHHHHHHHHH
Q 009801 349 NEEAGGHYNLGVMYYKG-------IGVKRDVKLACKYFLVAANAG----HQKAFYQLAKMFHTGVG-LKKNLHMATALYK 416 (525)
Q Consensus 349 ~~~~~a~~~lg~~y~~g-------~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~y~~g~g-~~~~~~~A~~~~~ 416 (525)
.++++++++.|.+...- .+......+|...++++++++ +..++..+|.+|..-=. .-|+.++|.++|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 36788888887766441 234567888999999999884 35699999999986110 1389999999999
Q ss_pred HHHHcCC---hHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 009801 417 LVAERGP---WSSLSRWALESYL-KGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 417 ~a~~~~~---~~a~~~l~~~~~~-~g~~~~A~~~~~~a~~~~ 454 (525)
+|++++| ..+.+.+|..++. .|++++|..++++|+...
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 9999975 6788899998888 499999999999999874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-05 Score=58.56 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK-AFYQLAKMFHTGVGLKKNLHMATALYKLVAERG 422 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~-a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~ 422 (525)
..|..+.. .+++++|+..|+++++. .++. +++.+|.+|.. .+++++|+.+|+++++.+
T Consensus 5 ~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 34445555 55555555555555544 3344 55555555554 555555555555555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=6e-05 Score=74.48 Aligned_cols=80 Identities=9% Similarity=-0.061 Sum_probs=67.8
Q ss_pred cCCHHHHHHHHHHHHHc-----CC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-----hHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAER-----GP-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----G-----YEVAQSNAAW 464 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~-----~~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~-----~~~a~~~la~ 464 (525)
.+++++|+..|+++++. ++ ...+.++|.+|..+|++++|+.+++++++. | ....++|||.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 56899999999999865 22 456789999999999999999999999854 2 3558899999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
+|.. ++++++|+.+|++|++
T Consensus 391 ~~~~----------------qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMG----------------LENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHH----------------TTCHHHHHHHHHHHHH
T ss_pred HHHh----------------ccCHHHHHHHHHHHHH
Confidence 9998 7789999999999986
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00019 Score=65.39 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHc-------CCCCcCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 009801 385 AGHQKAFYQLAKMFHT-------GVGLKKNLHMATALYKLVAERGP----WSSLSRWALESYLK-----GDVGKAFLLYS 448 (525)
Q Consensus 385 ~~~~~a~~~l~~~y~~-------g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~~-----g~~~~A~~~~~ 448 (525)
.+++++++|.|..... |.+......+|...+++|+++++ ..++..+|.+|... |+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 4688999999887632 22355678999999999999986 34889999998885 99999999999
Q ss_pred HHHHcC---hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 449 RMAELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 449 ~a~~~~---~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
+|++.+ +..+.+.+|..+... .+++++|..++++|+...
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~---------------~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIP---------------LNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTT---------------TTCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCchHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHcCC
Confidence 999873 388888888877551 478999999999999855
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00013 Score=55.55 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHH
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS-SLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQ 459 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~-a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~ 459 (525)
+..|..+.. .+++++|+..|+++++..+ .. +++.+|.++...|++++|+.+|+++++.. ++.++
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 567777876 8899999999999998864 56 88899999999999999999999998873 44444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00077 Score=64.00 Aligned_cols=66 Identities=12% Similarity=-0.063 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-WSSLSRWALESYLKGDVGKAFLLYSRMAELGY 455 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 455 (525)
.++.++..++.++.. .+++++|+.++++|+.+++ ..++..+|.++...|++++|+..|++|+..++
T Consensus 275 ~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 466677677776665 6888888888888888874 44556778888888888888888888887743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00018 Score=71.02 Aligned_cols=81 Identities=21% Similarity=0.141 Sum_probs=62.1
Q ss_pred cCCcHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CC---HHHH
Q 009801 223 RGEDDEAFQILEYQAQK-------GN---AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GE---PQSM 282 (525)
Q Consensus 223 ~~~~~~A~~~~~~~~~~-------~~---~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~ 282 (525)
.|++++|+..++++.+. ++ ..++.+||.+|...| ++++|+.+++++++. ++ +..+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-----~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-----DWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 34455555555554331 23 467889999998884 999999999999864 34 3578
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
++||.+|.. +|++++|+.+|++|++.
T Consensus 386 ~nLa~~~~~----qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 386 LKLGRLYMG----LENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----ccCHHHHHHHHHHHHHH
Confidence 999999999 99999999999999764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0033 Score=59.74 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh--CCC-CCccCHHHHHH-HHHHHH----hCCChhHHHHHHHHHHcC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVK--GYG-VEKKNYTKAKE-YFEKAA----DNEEAGGHYNLGVMYYKG 365 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~--g~~-~~~~~~~~A~~-~~~~a~----~~~~~~a~~~lg~~y~~g 365 (525)
..+..+|+.+|++|++.. ++.++..++.+|.. +.+ ... ....++. .++.+. ...++.++..++..+..
T Consensus 212 ~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~-~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~- 289 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE-KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV- 289 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCH-HHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCch-hhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-
Confidence 345678888888887764 66677666666532 111 111 1112222 222211 22567788888888888
Q ss_pred CCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCHH
Q 009801 366 IGVKRDVKLACKYFLVAANAG-HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKGDVG 441 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~~g~~~ 441 (525)
.+++++|+.++++|+.++ +..++..+|.++.. .|++++|++.|.+|+.++|....+.+.......-+.+
T Consensus 290 ---~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F~sn~~ 359 (372)
T 3ly7_A 290 ---KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVP 359 (372)
T ss_dssp ---HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSSCCCHH
T ss_pred ---CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcChHHHHhCceeecchh
Confidence 899999999999999884 55566788999987 9999999999999999988655554444333333333
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0055 Score=61.89 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCC----CCCccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcC
Q 009801 296 ERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGY----GVEKKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKG 365 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~----~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 365 (525)
.|+.++|+..|++..+.| +..++..|=..+.... ....++.++|...|++..+.+ +..++..|-..|..
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~- 117 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA- 117 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-
Confidence 678888888888777665 4555555544443211 112235778888888877664 55677778888888
Q ss_pred CCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCC
Q 009801 366 IGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGD 439 (525)
Q Consensus 366 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~~g~ 439 (525)
.++.++|...|++..+.| +...+..+=..|.. .++.++|.+.+++..+.+ +...+..+-..+...|+
T Consensus 118 ---~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 118 ---KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp ---HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred ---cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 888888888888877664 55666666666665 788888888888888776 34556677777888888
Q ss_pred HHHHHHHHHHHHHcC
Q 009801 440 VGKAFLLYSRMAELG 454 (525)
Q Consensus 440 ~~~A~~~~~~a~~~~ 454 (525)
.++|...+++-.+.+
T Consensus 191 ~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 191 ADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888876653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00062 Score=55.76 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcC---CHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCc
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKR---DVKLACKYFLVAANAG----HQKAFYQLAKMFHTGVGLK 405 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~---~~~~A~~~~~~a~~~~----~~~a~~~l~~~y~~g~g~~ 405 (525)
....+.+.|.+..+. .+.++.|++|+++.. .+ +.++++..++..++.+ +.+++++||..+.. .
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----L 84 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----c
Confidence 344444455544442 344555555555555 33 4445555555555543 23455555555544 5
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 009801 406 KNLHMATALYKLVAERGP 423 (525)
Q Consensus 406 ~~~~~A~~~~~~a~~~~~ 423 (525)
+++++|+++++++++..|
T Consensus 85 ~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp SCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHhcCC
Confidence 555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0009 Score=66.13 Aligned_cols=80 Identities=11% Similarity=-0.058 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHHHHcC-----C-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-----hHHHHHHHHH
Q 009801 405 KKNLHMATALYKLVAERG-----P-----WSSLSRWALESYLKGDVGKAFLLYSRMAEL-----G-----YEVAQSNAAW 464 (525)
Q Consensus 405 ~~~~~~A~~~~~~a~~~~-----~-----~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~-----~~~a~~~la~ 464 (525)
++++++|+..++++++.. + ...+.++|.+|..+|++++|+.+++++++. | ....++|||.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 679999999999998762 1 456789999999999999999999999854 2 3558889999
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
+|.. ++++++|+.+|++|++
T Consensus 380 ~~~~----------------~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 380 LQLH----------------QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHH----------------TTCHHHHHHHHHHHHH
T ss_pred HHHh----------------cCCHHHHHHHHHHHHH
Confidence 9998 7789999999999986
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00039 Score=56.96 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=72.4
Q ss_pred hHhHHHHHHHHHHHHh--cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHhccccHHH
Q 009801 105 VRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG----NIQSKMAVAYTYLRQDMHDK 178 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~la~~y~~~~~~~~ 178 (525)
+.....+.+.|.+... +.+.++.+.+|..+.. ...+.+.++++..++..++.+ +.+++|.||..|.+.++|++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 5667777888887654 5678999999998887 112347789999999998866 46899999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009801 179 AVKLYAELAEIAVNS 193 (525)
Q Consensus 179 A~~~y~~~~~~~~~~ 193 (525)
|+++++++++..|.+
T Consensus 90 A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999987654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00018 Score=54.24 Aligned_cols=70 Identities=9% Similarity=-0.111 Sum_probs=54.9
Q ss_pred hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 009801 120 MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIA 190 (525)
Q Consensus 120 ~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~ 190 (525)
++.+++.+..+|.++....+ ....++|..++++|+. .+++.+++.+|..+...|+|++|+.+++++++.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56788888888887653111 3347899999999865 5689999999999999999999999999887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00058 Score=51.37 Aligned_cols=69 Identities=6% Similarity=0.001 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
+.+++.+..+|.++...+ ......+|..+++++++. +++.+.+.+|.+++. .+++++|+.+++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~--~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLH--KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTT--TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence 567888888888886542 112468888888888765 678888888888888 888888888888888765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0014 Score=64.78 Aligned_cols=81 Identities=7% Similarity=-0.141 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc-----C--C---hHHHH
Q 009801 369 KRDVKLACKYFLVAANA-------GH---QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER-----G--P---WSSLS 428 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~-----~--~---~~a~~ 428 (525)
++++++|+..++++++. .| ..++.+|+.+|.. .+++++|+.+++++++. + + ...++
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 57889999999998864 23 4678889999987 89999999999999865 2 2 44678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 429 RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+||.+|..+|++++|+.+|++|++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.031 Score=56.35 Aligned_cols=150 Identities=15% Similarity=0.050 Sum_probs=117.6
Q ss_pred ccCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHcCCC-----CcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Q 009801 333 KKNYTKAKEYFEKAADNE---EAGGHYNLGVMYYKGIG-----VKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTG 401 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~-----~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g 401 (525)
.|+.++|+..|++..+.| +..++..|=.++..... ..++.++|...|+...+.| +...+..+-..|..
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~- 117 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA- 117 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-
Confidence 569999999999998875 45566666555554211 2345889999999887764 66777888788887
Q ss_pred CCCcCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---hHHHHHHHHHHHhhhCCCccc
Q 009801 402 VGLKKNLHMATALYKLVAERG---PWSSLSRWALESYLKGDVGKAFLLYSRMAELG---YEVAQSNAAWILDKYGEGSMC 475 (525)
Q Consensus 402 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~a~~~la~~~~~~~~~~~~ 475 (525)
.++.++|.+.+++..+.+ +...+..+-..+...|+.++|...+++..+.| +...+..+-..+.+
T Consensus 118 ---~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~------- 187 (501)
T 4g26_A 118 ---KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD------- 187 (501)
T ss_dssp ---HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-------
T ss_pred ---cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-------
Confidence 899999999999998886 35567778888999999999999999998875 66677777777766
Q ss_pred cCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 476 MGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 476 ~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.++.++|...+++--+.+
T Consensus 188 ---------~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 188 ---------TKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp ---------TTCHHHHHHHHHHHHHHT
T ss_pred ---------CCCHHHHHHHHHHHHHhC
Confidence 667899999999876654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.068 Score=41.99 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=70.3
Q ss_pred hHhHHHHHHHHHHHHh--cCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCC----HHHHHHHHHHHhccccHHH
Q 009801 105 VRVMEEATSEVESAAM--EGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGN----IQSKMAVAYTYLRQDMHDK 178 (525)
Q Consensus 105 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~----~~a~~~la~~y~~~~~~~~ 178 (525)
+.....+...|.+... ..+..+.|.+|..+.. ...+.+..+++..++...+.++ -+.++.||..+.+.++|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 4556777777777654 5678999999998776 2225566779999999988764 4789999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009801 179 AVKLYAELAEIAVNS 193 (525)
Q Consensus 179 A~~~y~~~~~~~~~~ 193 (525)
|..+.+.+++..|.+
T Consensus 93 A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999886654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.28 Score=38.47 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhcCCHHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~~g~~~~A~~ 445 (525)
...+...|.+.... ....+.+++|+++.. .....+..+++..++..+..++ -+..+.||..+++.|+|.+|+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444455555443 345666666666654 1122334446666666665542 2456677777777777777777
Q ss_pred HHHHHHHc
Q 009801 446 LYSRMAEL 453 (525)
Q Consensus 446 ~~~~a~~~ 453 (525)
+.+..++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777655
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.062 Score=44.27 Aligned_cols=98 Identities=8% Similarity=0.004 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYS 316 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~ 316 (525)
..+++.+|+.++.. ++|.+|...|++|++. .++.+...++ . ......... ...+.+
T Consensus 63 ~~~l~~ladalf~~-----~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~-~-------~ss~p~s~~------~~~e~E 123 (167)
T 3ffl_A 63 YQLLVYHADSLFHD-----KEYRNAVSKYTMALQQKKALSKTSKVRPSTG-N-------SASTPQSQC------LPSEIE 123 (167)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHCC----------------------------C------CCCHHH
T ss_pred HHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHHHHhcCCCcccccc-c-------cCCCccccc------ccchHH
Confidence 35788899999888 4999999999999864 1221111111 0 001110000 012456
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHH-HhCCChhHHHHHHHHHH
Q 009801 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKA-ADNEEAGGHYNLGVMYY 363 (525)
Q Consensus 317 a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~y~ 363 (525)
..+.++.||.. .+++++|+..++.. .+.-.+.....||.+|.
T Consensus 124 lkykia~C~~~-----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 124 VKYKLAECYTV-----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 77888888877 45888888887775 34567777777777763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.78 E-value=1.8 Score=43.26 Aligned_cols=339 Identities=9% Similarity=-0.074 Sum_probs=181.0
Q ss_pred CCCCCCCccccCCCCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh-----cCChHHHHHHHHhhhcCCCcc
Q 009801 67 LDPGSWSPVFEPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM-----EGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 67 ~~~~~a~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~y~~g~g~~ 141 (525)
++++.+..+|++++..- | ...+=..|+......+. ..+.....|+++.. +.+...+......+.......
T Consensus 28 ~~~e~~~~iferal~~~-p--s~~LW~~Y~~f~~~~~~--~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS-Y--NLDLWMLYIEYVRKVSQ--KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp TCHHHHHHHHHHHSTTC-C--CHHHHHHHHHHHHHHC------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCHHHHHHHHHHHhccC-C--CHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 34556777788886643 3 22333333332222221 23445566777653 445666666666655322224
Q ss_pred CCHHHHHHHHHHHHcCC--CHHHHHHHHHHHh--------------ccccHHHHHHHHHHHHHHHHhhhhccCCCCCchh
Q 009801 142 RNKGKAFLYHHFAAEGG--NIQSKMAVAYTYL--------------RQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEP 205 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~~--~~~a~~~la~~y~--------------~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~ 205 (525)
++.+.+...|++|+... +..-+...-..+. ....+..|...|+.+...-+.. .
T Consensus 103 ~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~-----------s 171 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW-----------S 171 (493)
T ss_dssp HHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------S
T ss_pred HHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-----------c
Confidence 56788999999998742 2211111111111 1233444555555544322110 0
Q ss_pred hhhcccchhhhhHhhhcc--CC-----cHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc
Q 009801 206 IRIHNGAEENKGALRKSR--GE-----DDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK 276 (525)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~--~~-----~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~ 276 (525)
. ..+.......... +- .......|++++. +..+..++..+..+... ++.++|...|++|+..
T Consensus 172 ~----~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~-----~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 172 V----KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI-----GQKEKAKKVVERGIEM 242 (493)
T ss_dssp H----HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence 0 0111111111111 11 2345678888877 57899999999998877 4999999999999987
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---H-------cC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 009801 277 GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA---R-------QQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (525)
Q Consensus 277 ~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~---~-------~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~ 344 (525)
.......+......- .. +...-+..+. + .. ....+...+..... .++.+.|...|+
T Consensus 243 -P~~~~l~~~y~~~~e---~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r-----~~~~~~AR~i~~ 310 (493)
T 2uy1_A 243 -SDGMFLSLYYGLVMD---EE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-----KRGLELFRKLFI 310 (493)
T ss_dssp -CCSSHHHHHHHHHTT---CT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH-----HHCHHHHHHHHH
T ss_pred -CCcHHHHHHHHhhcc---hh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH-----cCCHHHHHHHHH
Confidence 322222222222210 11 1111111110 0 00 11233334444433 347899999999
Q ss_pred HHHhCC--ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 345 KAADNE--EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE 420 (525)
Q Consensus 345 ~a~~~~--~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (525)
+| ... ....+...+.+-.. ..++.+.|...|+++++. +.+..+......... .++.+.|...|+++.
T Consensus 311 ~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~----~~~~~~aR~l~er~~- 381 (493)
T 2uy1_A 311 EL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR----IGDEENARALFKRLE- 381 (493)
T ss_dssp HH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHSC-
T ss_pred Hh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH-
Confidence 99 432 23344444544433 033699999999999986 345444444544444 788999999999883
Q ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 421 RGPWSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 421 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
.....+......-...|+.+.+...++++.+
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233344444444567999999999998874
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.1 Score=42.98 Aligned_cols=115 Identities=5% Similarity=-0.122 Sum_probs=67.8
Q ss_pred ccCHHHHHHHHHHHHhC--CChh---------HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHH
Q 009801 333 KKNYTKAKEYFEKAADN--EEAG---------GHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG-----HQKAFYQLAK 396 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~---------a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l~~ 396 (525)
.+.|+-|+-....++.. ++++ +++.+|+.++. .++|.+|...|++|++.. .+.+...++
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~- 107 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAVSKYTMALQQKKALSKTSKVRPSTG- 107 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCC------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHHhcCCCcccccc-
Confidence 45677777666664432 2222 56777777777 777888888777777541 111110111
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcChHHHHHHHHHHH
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAER-GPWSSLSRWALESYLKGDVGKAFLLYSRM-AELGYEVAQSNAAWIL 466 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~a~~~la~~~ 466 (525)
........ ... .+.+.-+.++.++...+++++|+..++.. .+...+.....||.+|
T Consensus 108 -------~~ss~p~s-------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 108 -------NSASTPQS-------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred -------ccCCCccc-------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 00011110 001 12456788999999999999999998876 3456777777788765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.93 E-value=1.1 Score=37.45 Aligned_cols=43 Identities=14% Similarity=-0.064 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAEL 186 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~ 186 (525)
.|+.+.|.+..+.. ++..-+..||...+..++++-|...|.++
T Consensus 18 lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455554443332 44445555555555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.92 E-value=1.9 Score=45.98 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=46.0
Q ss_pred hhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCH
Q 009801 220 RKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNY 299 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~ 299 (525)
+...+..++|++.. .++...+.++... +++++|.+.. ...+++..|..||.++.. .+++
T Consensus 639 l~~~~~~~~a~~~~------~~~~~~f~~~l~~--------~~~~~A~~~~---~~~~~~~~W~~la~~al~----~~~~ 697 (814)
T 3mkq_A 639 LEGQEYYEEALNIS------PDQDQKFELALKV--------GQLTLARDLL---TDESAEMKWRALGDASLQ----RFNF 697 (814)
T ss_dssp HHHTTCHHHHHHHC------CCHHHHHHHHHHH--------TCHHHHHHHH---TTCCCHHHHHHHHHHHHH----TTCH
T ss_pred HHhCCChHHheecC------CCcchheehhhhc--------CCHHHHHHHH---HhhCcHhHHHHHHHHHHH----cCCH
Confidence 33445555555433 3444445554333 4888887764 334778888899999998 8899
Q ss_pred HHHHHHHHHH
Q 009801 300 TKALEWLTHA 309 (525)
Q Consensus 300 ~~A~~~~~~a 309 (525)
+.|+.+|.++
T Consensus 698 ~~A~~~y~~~ 707 (814)
T 3mkq_A 698 KLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988875
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.46 Score=37.96 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 409 HMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++..++.....++ -+..+.+|..+++.|+|.+|+++.+..++.
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444443322 234455555555555555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.01 E-value=3.5 Score=34.43 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYN 319 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 319 (525)
.|++.-|.|+.-. +|++.|.+..+.. ++...|..||..... .++.+-|+.+|+++ ++...+.
T Consensus 6 ~D~~~rF~LAL~l--------g~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~~---~D~~~L~ 67 (177)
T 3mkq_B 6 QDPHIRFDLALEY--------GNLDAALDEAKKL---NDSITWERLIQEALA----QGNASLAEMIYQTQ---HSFDKLS 67 (177)
T ss_dssp SCHHHHHHHHHHT--------TCHHHHHHHHHHH---CCHHHHHHHHHHHHH----TTCHHHHHHHHHHT---TCHHHHH
T ss_pred CChHHHHHHHHhc--------CCHHHHHHHHHHh---CCHHHHHHHHHHHHH----cCChHHHHHHHHHh---CCHHHHH
Confidence 3566666666554 4788887775443 677788888888887 78888888888774 3333333
Q ss_pred HHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 320 GIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLV 381 (525)
Q Consensus 320 ~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~ 381 (525)
.| |.. .|+.++-.+.-+.+...++....+.. +.. .++.+++++.|.+
T Consensus 68 ~L---y~~-----tg~~e~L~kla~iA~~~g~~n~af~~---~l~----lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 68 FL---YLV-----TGDVNKLSKMQNIAQTREDFGSMLLN---TFY----NNSTKERSSIFAE 114 (177)
T ss_dssp HH---HHH-----HTCHHHHHHHHHHHHHTTCHHHHHHH---HHH----HTCHHHHHHHHHH
T ss_pred HH---HHH-----hCCHHHHHHHHHHHHHCccHHHHHHH---HHH----cCCHHHHHHHHHH
Confidence 22 222 23555555555555555544443332 233 5666666666643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.83 E-value=1.4 Score=35.52 Aligned_cols=102 Identities=14% Similarity=-0.011 Sum_probs=69.1
Q ss_pred HHhCCChhHHHHHHHHHHcCCCCcCCH------HHHHHHHHHHHHcC------C--HHHHHHHHHHHHcCCCCcCCHHHH
Q 009801 346 AADNEEAGGHYNLGVMYYKGIGVKRDV------KLACKYFLVAANAG------H--QKAFYQLAKMFHTGVGLKKNLHMA 411 (525)
Q Consensus 346 a~~~~~~~a~~~lg~~y~~g~~~~~~~------~~A~~~~~~a~~~~------~--~~a~~~l~~~y~~g~g~~~~~~~A 411 (525)
.+...++++|......... .++. ++-...|++|+..- . ..++.++-.+... ..+|.++|
T Consensus 7 ~~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~---ei~D~d~a 79 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK---AIQEPDDA 79 (161)
T ss_dssp ---CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH---HHHCGGGC
T ss_pred eeCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH---HhcCHHHH
Confidence 3455778888888887777 5666 77778888887541 1 1233333322222 15899999
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 412 TALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 412 ~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
...|+.++.... +..+...|..-.++|+.++|+..+.+|+.++
T Consensus 80 R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 80 RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 999999987754 3344445555667999999999999999885
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.74 Score=36.29 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 409 HMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++..++.....++ -+.++.+|..+++.|+|.+|+++.+..++.
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344444444443332 234444455555555555555555544443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.79 E-value=0.86 Score=35.91 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHH-hCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcCCHHH
Q 009801 335 NYTKAKEYFEKAA-DNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG---HQKAFYQLAKMFHTGVGLKKNLHM 410 (525)
Q Consensus 335 ~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~y~~g~g~~~~~~~ 410 (525)
+.....+-|++=. ..-.+.+.|++|+++..... ..+..+++..++...+.+ .-+.++.||..+.. .++|++
T Consensus 22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~-~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk----lgdY~~ 96 (134)
T 3o48_A 22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSM 96 (134)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH----hhhHHH
Confidence 3444444444422 22467899999999988433 456778999998888764 36789999999998 999999
Q ss_pred HHHHHHHHHHcCChH
Q 009801 411 ATALYKLVAERGPWS 425 (525)
Q Consensus 411 A~~~~~~a~~~~~~~ 425 (525)
|..+.+..++..|.+
T Consensus 97 Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 97 AKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhhCCCC
Confidence 999999999998643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.64 E-value=12 Score=39.63 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=92.9
Q ss_pred cCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHH
Q 009801 261 RDRTKALM-WFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKA 339 (525)
Q Consensus 261 ~~~~~A~~-~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A 339 (525)
+++++|.+ ++.. + .+......+...+.. .+..++|++..+ ++...+.++.. .+++++|
T Consensus 613 ~~~~~a~~~~l~~-i--~~~~~~~~~~~~l~~----~~~~~~a~~~~~------~~~~~f~~~l~--------~~~~~~A 671 (814)
T 3mkq_A 613 GEIEEAIENVLPN-V--EGKDSLTKIARFLEG----QEYYEEALNISP------DQDQKFELALK--------VGQLTLA 671 (814)
T ss_dssp TCHHHHHHHTGGG-C--CCHHHHHHHHHHHHH----TTCHHHHHHHCC------CHHHHHHHHHH--------HTCHHHH
T ss_pred CCHHHHHHHHHhc-C--CchHHHHHHHHHHHh----CCChHHheecCC------Ccchheehhhh--------cCCHHHH
Confidence 37888766 4410 0 101122445555666 777787775542 33444444432 2488888
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 009801 340 KEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVA 419 (525)
Q Consensus 340 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~ 419 (525)
.+.. ...+++..+..+|..+.. .++++.|...|.++- +... +..++.. .++.++....-+.+.
T Consensus 672 ~~~~---~~~~~~~~W~~la~~al~----~~~~~~A~~~y~~~~---d~~~---l~~l~~~----~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 672 RDLL---TDESAEMKWRALGDASLQ----RFNFKLAIEAFTNAH---DLES---LFLLHSS----FNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHT---CHHH---HHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHH---HhhCcHhHHHHHHHHHHH----cCCHHHHHHHHHHcc---Chhh---hHHHHHH----cCCHHHHHHHHHHHH
Confidence 8764 345788899999999999 999999999999753 3332 3344443 556676666666666
Q ss_pred HcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 420 ERGPWSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 420 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
..+....... ++...|++++|++.|.+.
T Consensus 735 ~~~~~~~A~~---~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGKFNLAFN---AYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTCHHHHHH---HHHHHTCHHHHHHHHHHT
T ss_pred HcCchHHHHH---HHHHcCCHHHHHHHHHHc
Confidence 6655433222 366688999999888543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.79 E-value=1.8 Score=34.96 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=71.3
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCcCCH------HHHHHHHHHHHHcCChH----------HHHHHHHHHHhcCCHHHHHH
Q 009801 382 AANAGHQKAFYQLAKMFHTGVGLKKNL------HMATALYKLVAERGPWS----------SLSRWALESYLKGDVGKAFL 445 (525)
Q Consensus 382 a~~~~~~~a~~~l~~~y~~g~g~~~~~------~~A~~~~~~a~~~~~~~----------a~~~l~~~~~~~g~~~~A~~ 445 (525)
.+...+++.+.......+. .++. ++-++.|++|+..-|+. -+.+.+. +...+|.++|..
T Consensus 7 ~~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~ 81 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARD 81 (161)
T ss_dssp ---CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHH
T ss_pred eeCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHH
Confidence 3455788888888888876 5666 78889999999876542 2334453 356689999999
Q ss_pred HHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 446 LYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 446 ~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
.|+.+++.....|..++++..+.. .+++..+|.+.+.+|+.++
T Consensus 82 vy~~a~~~hKkFAKiwi~~AqFEi--------------Rqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 82 YFQMARANCKKFAFVHISFAQFEL--------------SQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHCTTBHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--------------HcccHHHHHHHHHHHhccC
Confidence 999998763222444444444431 1778999999999999987
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.29 E-value=4.3 Score=32.38 Aligned_cols=74 Identities=5% Similarity=-0.010 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG---EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
-.+.+.|+++.++.+. ..+.+..+++..++..++.+ .-+.++.||.-+.+ .++|++|.++.+..++.. +
T Consensus 37 vs~~t~F~YAw~Lv~S--~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk----l~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKS--TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTCCCC
T ss_pred CcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCCCc
Confidence 4788999999998888 45667889999999988753 34688999999999 999999999999998764 4
Q ss_pred HHHHH
Q 009801 315 YSAYN 319 (525)
Q Consensus 315 ~~a~~ 319 (525)
..+..
T Consensus 111 ~QA~~ 115 (144)
T 1y8m_A 111 KQVGA 115 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.29 E-value=11 Score=36.21 Aligned_cols=89 Identities=24% Similarity=0.209 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC-----
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN----- 349 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~----- 349 (525)
..||.+|.. .+++.+|...+.+..+. + -.+.+..-..+|.. .+|+.++...+.+|...
T Consensus 103 ~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-----~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 103 ARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-----LSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHhhhccCC
Confidence 467888888 88888888888877652 1 23344445555554 45888888888877533
Q ss_pred CChhHH----HHHHHHHH-cCCCCcCCHHHHHHHHHHHHH
Q 009801 350 EEAGGH----YNLGVMYY-KGIGVKRDVKLACKYFLVAAN 384 (525)
Q Consensus 350 ~~~~a~----~~lg~~y~-~g~~~~~~~~~A~~~~~~a~~ 384 (525)
.+|... ..-|.++. . .+++.+|..+|-.+.+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~----~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAAD----ERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHh----ccCHHHHHHHHHHHHh
Confidence 223222 34577777 7 8899999888877753
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.97 E-value=1.3 Score=44.11 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE 420 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~ 420 (525)
..||++... ......|..||.+|... ++...++.||.+... .++.-.|+.+|-+++.
T Consensus 156 ~~LGDL~RY----~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 156 VHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHS
T ss_pred HHcccHHHH----HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHHHHHHHHHh
Confidence 344555544 44445555555554444 334444455554443 4444445555554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.13 E-value=31 Score=37.04 Aligned_cols=348 Identities=11% Similarity=0.036 Sum_probs=180.3
Q ss_pred ccHHHHHHHHHHHhhcCCh--HhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc---CCC--
Q 009801 87 GSYYITISKMMSAVTNGDV--RVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE---GGN-- 159 (525)
Q Consensus 87 a~~~l~~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~---~~~-- 159 (525)
+...++..........|.- .-+..-..|+-++.+.+-..|...||.++.. +.++++..+.+-+. .++
T Consensus 337 s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g------~~~~gl~~L~~yL~~~~s~~~~ 410 (963)
T 4ady_A 337 SLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKG------NLLEGKKVMAPYLPGSRASSRF 410 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSS------CTTTHHHHHTTTSTTSCCSCHH
T ss_pred hHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccC------chHHHHHHHHHhccccCCCcHH
Confidence 4455555554443333332 2233334576665444556677788888763 66677777776554 232
Q ss_pred --HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHH
Q 009801 160 --IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQA 237 (525)
Q Consensus 160 --~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 237 (525)
..|++.+|.++...++ +++.++...+...... .|+- .....
T Consensus 411 ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~-----------------------------~~~~--~~~~i---- 453 (963)
T 4ady_A 411 IKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGT-----------------------------SGDE--DVDVL---- 453 (963)
T ss_dssp HHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSC-----------------------------CSCH--HHHHH----
T ss_pred HHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCcccc-----------------------------cccc--ccHHH----
Confidence 3678888888877664 5666665544321100 0000 00000
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEP----QSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
...+...||.+|.-. .-++++..+...+..+++ .+.+.||.++.- .++.+-....+..+.+..
T Consensus 454 ---r~gAaLGLGla~~GS------~~eev~e~L~~~L~dd~~~~~~~AalALGli~vG----Tgn~~ai~~LL~~~~e~~ 520 (963)
T 4ady_A 454 ---LHGASLGIGLAAMGS------ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLG----TGKPEAIHDMFTYSQETQ 520 (963)
T ss_dssp ---HHHHHHHHHHHSTTC------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHCS
T ss_pred ---HHHHHHHHHHHhcCC------CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc----cCCHHHHHHHHHHHhccC
Confidence 013566788887643 335677777777765553 355667877775 777776666666666554
Q ss_pred CHH----HHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhH----HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 314 LYS----AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGG----HYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 314 ~~~----a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a----~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+.. +...||.++. ++.+.+-...+......++.. .+.+|..|.. .++...-...+..+...
T Consensus 521 ~e~vrR~aalgLGll~~-------g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaG----TGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 521 HGNITRGLAVGLALINY-------GRQELADDLITKMLASDESLLRYGGAFTIALAYAG----TGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp CHHHHHHHHHHHHHHTT-------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT----SCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHhccC
Confidence 433 3344555543 244555555555554455443 3456777766 77755444466666654
Q ss_pred CCHH----HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcChHH
Q 009801 386 GHQK----AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS----RWALESYLKGDVGKAFLLYSRMAELGYEV 457 (525)
Q Consensus 386 ~~~~----a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~----~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 457 (525)
.+.. |...||.+.. ++.+.+...+....+..++..-+ .+|.+....++ .+++..+.+...-.+..
T Consensus 590 ~~d~VRraAViaLGlI~~------g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLL------RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp SCHHHHHHHHHHHHHHTS------SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHTCSSHH
T ss_pred CcHHHHHHHHHHHHhhcc------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHccCCCHH
Confidence 3322 3334444332 23333344443333444443333 33333323333 77888888887654433
Q ss_pred ----HHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC--CCHH----HHHHHHHHHHccccc
Q 009801 458 ----AQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ--GNEH----AALLIGDAYYYGRVR 520 (525)
Q Consensus 458 ----a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~----a~~~lg~~y~~g~g~ 520 (525)
|...||.+...- ......+...-++-+.+.... .++. +.+-.|.++. |-|+
T Consensus 663 Vrq~Ai~ALG~Ig~gt-----------nna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a-G~~n 723 (963)
T 4ady_A 663 VRQAAMIALSMILIQQ-----------TEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA-GGRN 723 (963)
T ss_dssp HHHHHHHHHHHHSTTC-----------CTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT-GGGT
T ss_pred HHHHHHHHHHHHhcCC-----------ccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc-CCCc
Confidence 444555544220 000011455555555554542 2333 4445777775 6554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.09 E-value=19 Score=34.47 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----CC---HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC----
Q 009801 281 SMEFLGEIYARGAGVERNYTKALEWLTHAARQ----QL---YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN---- 349 (525)
Q Consensus 281 a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~---~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~---- 349 (525)
+.+.||.+|.. .++.++-.+++...... +. +.....|=..+.. + .+..+.-++....+++-
T Consensus 21 ~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~---~-~~~~~~~~~~~~~~~~~a~~~ 92 (394)
T 3txn_A 21 GILQQGELYKQ----EGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLD---M-DAGTGIEVQLCKDCIEWAKQE 92 (394)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTT---S-CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc---C-CCcHHHHHHHHHHHHHHHHHH
Confidence 45678888888 88888877777765321 11 1112222223322 1 22444445555555432
Q ss_pred CChh----HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 009801 350 EEAG----GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA----GH----QKAFYQLAKMFHTGVGLKKNLHMATALYKL 417 (525)
Q Consensus 350 ~~~~----a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~ 417 (525)
.-.. ....||.+|.. .+++.+|...+.+..+. ++ .+.+..-..+|.. .+|+.++...|.+
T Consensus 93 ~r~flr~~l~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~ 164 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTS 164 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHH
Confidence 1111 23478999999 99999999988887653 22 2344445666776 8899999999998
Q ss_pred HHHcC-----ChH--H--HHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 009801 418 VAERG-----PWS--S--LSRWALESY-LKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 418 a~~~~-----~~~--a--~~~l~~~~~-~~g~~~~A~~~~~~a~~ 452 (525)
|.... ++. + ...-|..+. ..++|++|..+|-++.+
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 85432 332 2 224577778 89999999999988864
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.44 E-value=3.5 Score=40.99 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYN 319 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 319 (525)
.+..||++..... .+..|..||.+|+.. ++...+..||.+... .++.-+|+.+|.+++.. +.+.+..
T Consensus 154 ~l~~LGDL~RY~~-----~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~y~y~rsl~~~~Pf~~a~~ 224 (497)
T 1ya0_A 154 CLVHLGDIARYRN-----QTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAAST 224 (497)
T ss_dssp HHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred HHHHcccHHHHHH-----HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHHHHHHHHHhcCCCChhHHH
Confidence 5677899887773 789999999999875 678899999999998 88999999999999754 5788888
Q ss_pred HHHHHHHh
Q 009801 320 GIGYLYVK 327 (525)
Q Consensus 320 ~lg~~~~~ 327 (525)
+|...+..
T Consensus 225 nL~~~f~~ 232 (497)
T 1ya0_A 225 NLQKALSK 232 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888753
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.38 E-value=25 Score=32.34 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFE 344 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~ 344 (525)
|+++.+..+|..|.. .+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~-----e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLE-----GDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHH-----TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh-----cCCHHHHHHHHH
Confidence 566666666666665 336666666554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.65 E-value=27 Score=32.13 Aligned_cols=63 Identities=11% Similarity=-0.019 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCCCc---cCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009801 241 NAGAMYKIGLFYYFGLRGLR---RDRTKALMWFSKAA--DKGEPQSMEFLGEIYARGAGVERNYTKALEWLT 307 (525)
Q Consensus 241 ~~~a~~~Lg~~y~~~~~~~~---~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~ 307 (525)
+.+..-.|..++..-....+ .=..+|++|-.+.- +.|++..+..+|..|.. .+++.+|..+|-
T Consensus 91 ~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~H~i 158 (312)
T 2wpv_A 91 DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE----GDFVYEAERYFM 158 (312)
T ss_dssp SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHH
Confidence 44455556666543210111 12456777766653 34899999999999999 899999998876
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=80.67 E-value=66 Score=34.59 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLR 172 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~ 172 (525)
.+|.+.+.+.|.+..+.++....+.++..+.+
T Consensus 243 LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~ 274 (963)
T 4ady_A 243 LNDAGLALQLFKKLKEENDEGLSAQIAFDLVS 274 (963)
T ss_dssp HTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 45777777777777766677777777776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 525 | ||||
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 9e-13 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 3e-10 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 2e-09 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 6e-09 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 2e-06 | |
| d1klxa_ | 133 | a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He | 2e-11 | |
| d1klxa_ | 133 | a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He | 1e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.002 |
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 66.5 bits (160), Expect = 9e-13
Identities = 61/275 (22%), Positives = 101/275 (36%), Gaps = 16/275 (5%)
Query: 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKL 182
DP LG +E++ +A Y A + + Y + +K +K
Sbjct: 1 DPKELVGLGAKS----YKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLK- 55
Query: 183 YAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNA 242
+ + + + + + ++A Q A
Sbjct: 56 ---------KAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA 106
Query: 243 GAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKA 302
+G Y+ G + + RD KA+ +F+KA D + LG +Y G G ++ KA
Sbjct: 107 EGCASLGGIYHDG-KVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKA 165
Query: 303 LEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362
L A + G +Y G G K N+ +A + KA + E GG +NLG M
Sbjct: 166 LASYDKACDLKDSPGCFNAGNMYHHGEGATK-NFKEALARYSKACELENGGGCFNLGAMQ 224
Query: 363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKM 397
Y G GV R+ K A + F G + A L ++
Sbjct: 225 YNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQL 259
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 58.7 bits (140), Expect = 3e-10
Identities = 62/252 (24%), Positives = 100/252 (39%), Gaps = 8/252 (3%)
Query: 215 NKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAA 274
GA + +A + E + +G+ YY G +G+ ++ KA +++KA
Sbjct: 7 GLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQG-QGVEKNLKKAASFYAKAC 65
Query: 275 DKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKK 334
D LG +Y G GV +N KAL++ + A + +G +Y G V +
Sbjct: 66 DLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK-VVTR 124
Query: 335 NYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394
++ KA EYF KA D + G LG +Y G G +D+K A + A + +
Sbjct: 125 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNA 184
Query: 395 AKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYLKG-----DVGKAFLLYSR 449
M+H G G KN A A Y E G + +A + +
Sbjct: 185 GNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGA-MQYNGEGVTRNEKQAIENFKK 243
Query: 450 MAELGYEVAQSN 461
+LG + A
Sbjct: 244 GCKLGAKGACDI 255
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 56.1 bits (133), Expect = 2e-09
Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 12/257 (4%)
Query: 108 MEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVA 167
+A E A + LG LY G E+N KA ++ A + +
Sbjct: 18 FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 77
Query: 168 YTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDD 227
Y + + A + G + G + +
Sbjct: 78 NLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIYHDG--KVVTRDFK 127
Query: 228 EAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGE 287
+A + + +G Y G RG +D KAL + KA D + G
Sbjct: 128 KAVEYFTKACDLNDGDGCTILGSLYDAG-RGTPKDLKKALASYDKACDLKDSPGCFNAGN 186
Query: 288 IYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAA 347
+Y G G +N+ +AL + A + +G + G GV + N +A E F+K
Sbjct: 187 MYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTR-NEKQAIENFKKGC 245
Query: 348 DNEEAGGHYNLGVMYYK 364
G L + K
Sbjct: 246 KLGAKGACDILKQLKIK 262
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 54.9 bits (130), Expect = 6e-09
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 6/190 (3%)
Query: 317 AYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLAC 376
G+G ++K++T+AK+YFEKA D +E G +NLGV+YY+G GV++++K A
Sbjct: 4 ELVGLGAKSY-----KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA 58
Query: 377 KYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESYL 436
++ A + + + L ++++G G+ +N + A Y + + +
Sbjct: 59 SFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 118
Query: 437 KGDVGKAFLLYSRMAELGYEVAQSNAAWIL-DKYGEGSMCMGESGFCTDAERHQCAHSLW 495
V + F ++ + IL Y G + + C
Sbjct: 119 GKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS 178
Query: 496 WQASEQGNEH 505
GN +
Sbjct: 179 PGCFNAGNMY 188
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 3/215 (1%)
Query: 77 EPSIDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGM 136
E ++ A + ++ G++ + S+ + A++ A +
Sbjct: 51 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCA 110
Query: 137 GMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLI 196
+ + GK A ++ +
Sbjct: 111 SLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYD 170
Query: 197 SKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGL 256
P + G + G ++ A + + N G + +G Y G
Sbjct: 171 KACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNG- 227
Query: 257 RGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYAR 291
G+ R+ +A+ F K G + + L ++ +
Sbjct: 228 EGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIK 262
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Score = 59.8 bits (143), Expect = 2e-11
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 255 GLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL 314
G +++D KA+ ++ KA + E + + + N K ++L+ A
Sbjct: 1 GGGTVKKDLKKAIQYYVKACELNEMFGC------LSLVSNSQINKQKLFQYLSKACELN- 53
Query: 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKL 374
+ + KK+ KA +Y+ KA + G LG Y G GV ++ K
Sbjct: 54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 113
Query: 375 ACKYFLVAANAGHQKAFYQL 394
A K F A G + A L
Sbjct: 114 AVKTFEKACRLGSEDACGIL 133
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Score = 45.9 bits (107), Expect = 1e-06
Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 11/138 (7%)
Query: 328 GYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGH 387
G V KK+ KA +Y+ KA + E G +L + + +Y A
Sbjct: 2 GGTV-KKDLKKAIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNS 54
Query: 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWALESY----LKGDVGKA 443
L + G +KK+L A Y + Y + + +A
Sbjct: 55 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 114
Query: 444 FLLYSRMAELGYEVAQSN 461
+ + LG E A
Sbjct: 115 VKTFEKACRLGSEDACGI 132
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 28/243 (11%), Positives = 66/243 (27%), Gaps = 40/243 (16%)
Query: 132 FLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEI 189
G + A + A + + + + + D+AV Y +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 190 AVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILE--YQAQKGNAGAMYK 247
+ H N + +G D A + Q A
Sbjct: 233 S----------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 248 IGLFYYFGLRGLRRDRTKALMWFSKA--ADKGEPQSMEFLGEIYARGAGVERNYTKALEW 305
+ + +A ++ A S+ L I + N +A+
Sbjct: 277 LANALKE-----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE----QGNIEEAVRL 327
Query: 306 LTHAAR--QQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKA--ADNEEAGGHYNLGVM 361
A + +A++ + + + + +A ++++A A + N+G
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQ-----QGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 362 YYK 364
+
Sbjct: 383 LKE 385
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.002
Identities = 18/160 (11%), Positives = 43/160 (26%), Gaps = 24/160 (15%)
Query: 212 AEENKGALRKSRGEDDEAFQIL-----EYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKA 266
++ + SR + +Q + EY K ++ + + L+
Sbjct: 22 SKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHA--FKNQITTLQGQAKN- 78
Query: 267 LMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQL--YSAYNGIGYL 324
+A + A YT+ L+ L L + +G +
Sbjct: 79 -----RANPNRSEVQANLSLFLEAA----SGFYTQLLQELCTVFNVDLPCRVKSSQLGII 129
Query: 325 YVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYK 364
K + + + + + +LG +
Sbjct: 130 SNK-----QTHTSAIVKPQSSSCSYICQHCLVHLGDIARY 164
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.98 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.83 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 99.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 99.82 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.68 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.66 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.63 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.63 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.61 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.55 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.4 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.36 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.28 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.27 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.18 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.12 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.08 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.01 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.01 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.99 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.97 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.91 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.9 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.87 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.86 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.85 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.83 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.81 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.75 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.74 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.72 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.71 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.71 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.65 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.43 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.81 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.64 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.22 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=9.2e-29 Score=241.99 Aligned_cols=363 Identities=17% Similarity=0.141 Sum_probs=304.8
Q ss_pred cHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCCHHHH
Q 009801 88 SYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGNIQSK 163 (525)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~~~a~ 163 (525)
++.+|..++. .|++++|+..++++. +|.++.+++.+|.+|.. .+++++|+.+|+++++ ++++.++
T Consensus 2 ll~la~~~~~-------~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~ 70 (388)
T d1w3ba_ 2 PMELAHREYQ-------AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAY 70 (388)
T ss_dssp CCTHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3567777776 889999999999964 77899999999999998 8999999999999976 4689999
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc--CC
Q 009801 164 MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK--GN 241 (525)
Q Consensus 164 ~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~ 241 (525)
..+|.+|...|++++|+..+.++.+..+.... .................+.......... ..
T Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (388)
T d1w3ba_ 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFID----------------GYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----------------HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhcccccccccccccccccccccc----------------cccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999876443211 1222333344445555555555544333 55
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHH
Q 009801 242 AGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSA 317 (525)
Q Consensus 242 ~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 317 (525)
.......+...... .....+...+.+.+.. +++.++..+|.++.. .+++++|..+++++++. +++.+
T Consensus 135 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T d1w3ba_ 135 YCVRSDLGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp THHHHHHHHHHHTT-----SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccccccccccccc-----chhhhhHHHHHHhhccCcchhHHHHhhcccccc----cCcHHHHHHHHHHHHHhCcccHHH
Confidence 66666677766555 4888888888887764 678899999999998 99999999999999876 47899
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQ 393 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 393 (525)
+..+|.++.. .+++++|+..++++.+. ..+..+..+|.+|.. .+++++|+.+|+++++. +++.++..
T Consensus 206 ~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 276 (388)
T d1w3ba_ 206 YINLGNVLKE-----ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQPHFPDAYCN 276 (388)
T ss_dssp HHHHHHHHHT-----TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHhhhhhc-----cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999986 56999999999998865 577888999999999 99999999999999987 67899999
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhh
Q 009801 394 LAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKY 469 (525)
Q Consensus 394 l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~ 469 (525)
+|.++.. .+++++|+.+++++....+ ...+..++.++...|++++|+.+|+++++. +++.+++++|.++..
T Consensus 277 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 351 (388)
T d1w3ba_ 277 LANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ- 351 (388)
T ss_dssp HHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHH----cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 9999998 9999999999999998864 667889999999999999999999999876 578899999999988
Q ss_pred CCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 470 GEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
.+++++|+.+|++|++.. +++++.+||.+|.
T Consensus 352 ---------------~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 352 ---------------QGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp ---------------TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ---------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 667899999999999865 7999999999986
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.97 E-value=6.1e-29 Score=231.39 Aligned_cols=257 Identities=25% Similarity=0.295 Sum_probs=174.0
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHH
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSK 163 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 163 (525)
||++++.||..+.. .+|+++|+++|+++++.|++.+++.||.+|..|.++++|+.+|..|++++.+.+++.+.
T Consensus 1 ~p~~~~~lG~~~~~-------~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYK-------EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchh
Confidence 57788888887776 77888888888888888888888888888888888888888888888888888888777
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHH
Q 009801 164 MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG 243 (525)
Q Consensus 164 ~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 243 (525)
..||.++..... ...+.++|+.+++++.+.+.+.
T Consensus 74 ~~l~~~~~~~~~----------------------------------------------~~~~~~~a~~~~~~a~~~g~~~ 107 (265)
T d1ouva_ 74 HLLGNLYYSGQG----------------------------------------------VSQNTNKALQYYSKACDLKYAE 107 (265)
T ss_dssp HHHHHHHHHTSS----------------------------------------------SCCCHHHHHHHHHHHHHTTCHH
T ss_pred hccccccccccc----------------------------------------------cchhhHHHHHHHhhhhhhhhhh
Confidence 777776643210 0112233344444445556666
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGY 323 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 323 (525)
+...||..+..+ .....+...|+.++.+..+.+++.++..||.+|..+.+...+...+..+++.+++.+++.++++||.
T Consensus 108 a~~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~ 186 (265)
T d1ouva_ 108 GCASLGGIYHDG-KVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGN 186 (265)
T ss_dssp HHHHHHHHHHHC-SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhcccccCC-CcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhh
Confidence 666666666655 2445566666666666666666666666666666666566666666666666666666666666666
Q ss_pred HHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009801 324 LYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLA 395 (525)
Q Consensus 324 ~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 395 (525)
+|..|.++.+ |+++|+.||+++++.+++.++++||.+|..|.|+.+|+++|+.||++|++.|+..|...|.
T Consensus 187 ~y~~g~~~~~-d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~ 257 (265)
T d1ouva_ 187 MYHHGEGATK-NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 257 (265)
T ss_dssp HHHHTCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcccCccccc-chhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 6666655544 6666666666666666666666666666666666666666666666666666666655554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.97 E-value=3.3e-28 Score=226.43 Aligned_cols=258 Identities=24% Similarity=0.317 Sum_probs=200.7
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPV 202 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~ 202 (525)
||++++.||..+.. .+|+.+|++||++|++.|+..|++.||.+|......
T Consensus 1 ~p~~~~~lG~~~~~----~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~-------------------------- 50 (265)
T d1ouva_ 1 DPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGV-------------------------- 50 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS--------------------------
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc--------------------------
Confidence 57788888888777 788888888888888888888888888888652211
Q ss_pred chhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHH
Q 009801 203 IEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSM 282 (525)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 282 (525)
..++.+|+.+++.++..+++.++..||.++..+ .....+.++|+.+++++.+.+...+.
T Consensus 51 --------------------~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~-~~~~~~~~~a~~~~~~a~~~g~~~a~ 109 (265)
T d1ouva_ 51 --------------------EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG-QGVSQNTNKALQYYSKACDLKYAEGC 109 (265)
T ss_dssp --------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------chhHHHHHHhhcccccccccchhhccccccccc-cccchhhHHHHHHHhhhhhhhhhhHH
Confidence 113334444555556777888888888887766 36667888888888888888888888
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMY 362 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 362 (525)
..||..+..+.....+...|+.++.+....++..+++.||.+|..+.+... +...+..+++.+.+.+++.++++||.+|
T Consensus 110 ~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~a~~~g~~~A~~~lg~~y 188 (265)
T d1ouva_ 110 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLKDSPGCFNAGNMY 188 (265)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCccc-ccccchhhhhccccccccccccchhhhc
Confidence 888888887777777888888888888888888888888888887666555 7888888888888888888888888888
Q ss_pred HcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009801 363 YKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLSRWAL 432 (525)
Q Consensus 363 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 432 (525)
..|.++.+++++|+.||+++++.+++.++++||.+|..|.|+.+|+++|++||++|++.++..|...|..
T Consensus 189 ~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~~ 258 (265)
T d1ouva_ 189 HHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQ 258 (265)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHT
T ss_pred ccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 8888878888888888888888888888888888888888888888888888888888888777665543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-27 Score=233.64 Aligned_cols=357 Identities=17% Similarity=0.116 Sum_probs=304.5
Q ss_pred cCCCCCCCccccCC--CCCCCCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCcc
Q 009801 66 NLDPGSWSPVFEPS--IDPGAINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRE 141 (525)
Q Consensus 66 ~~~~~~a~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~ 141 (525)
.|++.+|+..|+++ .+|+++.+++.+|.++.. .+++++|+..++++. +|.++.+++.+|.+|.. .
T Consensus 12 ~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~ 80 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ-------CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE----R 80 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh----h
Confidence 46778888888887 678889999999999987 889999999999965 67899999999999998 9
Q ss_pred CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHh
Q 009801 142 RNKGKAFLYHHFAAEG--GNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGAL 219 (525)
Q Consensus 142 ~d~~~A~~~~~~a~~~--~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (525)
+++++|+..+.++... .+...................+.............. ..........
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 144 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL----------------YCVRSDLGNL 144 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC----------------THHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------cccccccccc
Confidence 9999999999999764 567777778887777777777766666554332111 1112334445
Q ss_pred hhccCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCC
Q 009801 220 RKSRGEDDEAFQILEYQAQ--KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGV 295 (525)
Q Consensus 220 ~~~~~~~~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~ 295 (525)
....+....+...+.+... +.++.+...+|..+... +++++|+.+++++++. +++.++..+|.++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---- 215 (388)
T d1w3ba_ 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-----GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE---- 215 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----
T ss_pred ccccchhhhhHHHHHHhhccCcchhHHHHhhccccccc-----CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhc----
Confidence 5667777788887777644 47899999999999877 4999999999999875 678999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCC
Q 009801 296 ERNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRD 371 (525)
Q Consensus 296 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~ 371 (525)
.+++++|+..|+++.... .+..+..+|.++.. .+++++|+.+|+++++. +++.++..+|.++.. .++
T Consensus 216 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~ 286 (388)
T d1w3ba_ 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-----QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGS 286 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSC
T ss_pred cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Confidence 999999999999998764 78899999999987 56999999999999876 678999999999999 999
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 009801 372 VKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLY 447 (525)
Q Consensus 372 ~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~ 447 (525)
+.+|+..|+++... .+...+..++.++.. .+++++|+.+|+++++..| +.+++.+|.++...|++++|+.+|
T Consensus 287 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 287 VAEAEDCYNTALRLCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhhccCCccchhhhHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999876 678899999999998 9999999999999999875 678899999999999999999999
Q ss_pred HHHHHc--ChHHHHHHHHHHHhhhCC
Q 009801 448 SRMAEL--GYEVAQSNAAWILDKYGE 471 (525)
Q Consensus 448 ~~a~~~--~~~~a~~~la~~~~~~~~ 471 (525)
++|++. +++.++.++|.+|...||
T Consensus 363 ~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999986 578999999999987543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.1e-19 Score=169.92 Aligned_cols=199 Identities=15% Similarity=0.096 Sum_probs=161.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLY 315 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~ 315 (525)
+|.++.+++.+|.+|...+ ++++|+.+|+++++. +++.++..+|.+|.. .+++++|+..+++++.....
T Consensus 49 ~P~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~ 119 (323)
T d1fcha_ 49 DPKHMEAWQYLGTTQAENE-----QELLAISALRRCLELKPDNQTALMALAVSFTN----ESLQRQACEILRDWLRYTPA 119 (323)
T ss_dssp CTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSTT
T ss_pred CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHhhhccccccccccccccccccc----cccccccccchhhHHHhccc
Confidence 4577899999999998884 999999999999875 678999999999999 99999999999999865311
Q ss_pred -----------HHHHHHHHHHHh-CCCCCccCHHHHHHHHHHHHhC----CChhHHHHHHHHHHcCCCCcCCHHHHHHHH
Q 009801 316 -----------SAYNGIGYLYVK-GYGVEKKNYTKAKEYFEKAADN----EEAGGHYNLGVMYYKGIGVKRDVKLACKYF 379 (525)
Q Consensus 316 -----------~a~~~lg~~~~~-g~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~ 379 (525)
.....++..... +.....+.+.+|+..|+++++. .++.++..+|.++.. .+++++|+.+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 195 (323)
T d1fcha_ 120 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEYDKAVDCF 195 (323)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH----HHHHhhhhccc
Confidence 111111111100 0000124788999999999865 356788999999999 99999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 380 LVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 380 ~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++++.. +++.++..+|.+|.. .+++++|+.+|+++++.+ ++.+++.+|.++...|++++|+.+|++|++.
T Consensus 196 ~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 196 TAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhcccc----cccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999876 689999999999998 999999999999999886 4789999999999999999999999999975
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2e-19 Score=171.36 Aligned_cols=240 Identities=16% Similarity=0.129 Sum_probs=172.5
Q ss_pred CCcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHH--hcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHc--CCC
Q 009801 84 AINGSYYITISKMMSAVTNGDVRVMEEATSEVESAA--MEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAE--GGN 159 (525)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~~ 159 (525)
+....|.+|..++. .|++++|+..|+++. +|.++.+++.+|.+|.. .+++++|+.+|+++++ +++
T Consensus 18 ~~~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~ 86 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQ-------EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDN 86 (323)
T ss_dssp TCSSHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHhhhcccccc
Confidence 34556899999987 889999999999975 67889999999999999 8999999999999976 568
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..++..+|.+|...+++++|++.+++++...+........... . ....
T Consensus 87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------------------------~------~~~~ 134 (323)
T d1fcha_ 87 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE--------------------------G------AGGA 134 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------------
T ss_pred ccccccccccccccccccccccchhhHHHhccchHHHHHhhhh--------------------------h------hhhc
Confidence 9999999999999999999999999997754433211000000 0 0000
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-- 313 (525)
+.......++..... +.+.+|+..|+++++. .++.++..+|.++.. .+++++|+.+|++++...
T Consensus 135 ~~~~~~~~~~~~~~~------~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~ 204 (323)
T d1fcha_ 135 GLGPSKRILGSLLSD------SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEYDKAVDCFTAALSVRPN 204 (323)
T ss_dssp ------CTTHHHHHH------HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred ccccchhhHHHHHHh------hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH----HHHHhhhhcccccccccccc
Confidence 000011111112211 2667788888887764 245677778888887 778888888888877653
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
++.++..+|.++.. .|++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|++|++.
T Consensus 205 ~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 205 DYLLWNKLGATLAN-----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN----LGAHREAVEHFLEALNM 269 (323)
T ss_dssp CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhcccc-----cccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 67777777777766 45777777777777654 567777777777777 77777777777777764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=99.82 E-value=3.7e-20 Score=151.49 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=67.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCH
Q 009801 293 AGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDV 372 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~ 372 (525)
.||.+|+++|+.||+++++.+++.+++.|+... ..+.++|+++|+++++.+++.+++.||.+|..|.++.+|+
T Consensus 3 ~gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~~~-------~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 3 GTVKKDLKKAIQYYVKACELNEMFGCLSLVSNS-------QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTCT-------TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCcccCHHHHHHHHHHHHHCCChhhhhhhcccc-------ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhh
Confidence 344445555555555555555555554444321 1245555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChHHHH
Q 009801 373 KLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWSSLS 428 (525)
Q Consensus 373 ~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 428 (525)
++|+.||+++++.+++.++++||.+|..|.|+.+|.++|+.||++|++.+++.++.
T Consensus 76 ~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~ 131 (133)
T d1klxa_ 76 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 131 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55555555555555555555555555555555555555555555555555555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=99.82 E-value=8e-20 Score=149.46 Aligned_cols=132 Identities=27% Similarity=0.323 Sum_probs=120.9
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccC
Q 009801 256 LRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKN 335 (525)
Q Consensus 256 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~ 335 (525)
|.++++|+++|+.||+++++.+++.+++.||.. +..+.++|+.+|+++++.+++.+++.||.+|..|.++.+ |
T Consensus 2 G~gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~~------~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~-d 74 (133)
T d1klxa_ 2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSN------SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK-D 74 (133)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTC------TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC-C
T ss_pred CCCcccCHHHHHHHHHHHHHCCChhhhhhhccc------cccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccch-h
Confidence 357888999999999999999999999988753 367999999999999999999999999999999988776 9
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009801 336 YTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQL 394 (525)
Q Consensus 336 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 394 (525)
+++|+.||+++++.+++.++++||.+|..|.++.+|.++|+.||++|++.|++.++..|
T Consensus 75 ~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~l 133 (133)
T d1klxa_ 75 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 133 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC
T ss_pred hHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.8e-15 Score=142.76 Aligned_cols=228 Identities=11% Similarity=0.063 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHH
Q 009801 159 NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQ 238 (525)
Q Consensus 159 ~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 238 (525)
..+++..+|.++..++.+++|+..++++++ .+
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~------------------------------------------------ln 73 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------------------------------------LN 73 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------------------------------------HC
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHH------------------------------------------------HC
Confidence 356667777777778888888888888766 46
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--C
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ--L 314 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~ 314 (525)
|.+..+++..|.++...+ +++++|+.+++++++. ++..++.++|.++.. .+++++|+.+++++++.. +
T Consensus 74 P~~~~a~~~r~~~l~~l~----~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~----l~~~~eAl~~~~kal~~dp~n 145 (315)
T d2h6fa1 74 AANYTVWHFRRVLLKSLQ----KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW----LRDPSQELEFIADILNQDAKN 145 (315)
T ss_dssp TTCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTC
T ss_pred CCChHHHHHHHHHHHHhC----cCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh----hccHHHHHHHHhhhhhhhhcc
Confidence 678899999999988763 5799999999999875 789999999999999 999999999999999875 8
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCC--CCcCCHHHHHHHHHHHHHc--CCH
Q 009801 315 YSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGI--GVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 315 ~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~--~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
..++.++|.++.. .+++++|+.+++++++. .+..+++++|.++.... ...+++++|+..+.++++. ++.
T Consensus 146 ~~a~~~~~~~~~~-----~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~ 220 (315)
T d2h6fa1 146 YHAWQHRQWVIQE-----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 220 (315)
T ss_dssp HHHHHHHHHHHHH-----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCch
Confidence 9999999999987 56899999999999976 57889999999987622 1234578999999999887 688
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRWALESYL--KGDVGKAFLLYSRMAE 452 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~--~g~~~~A~~~~~~a~~ 452 (525)
.++++++.++.. ....++...++++++..+ ..++..++.++.. .++.+.+...+++|.+
T Consensus 221 ~~~~~l~~ll~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 221 SAWNYLKGILQD-----RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHHTT-----TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999998764 446788888888887753 3455566665543 2455556666666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.5e-15 Score=140.68 Aligned_cols=237 Identities=9% Similarity=-0.019 Sum_probs=192.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHcC--
Q 009801 239 KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVER-NYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 239 ~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~-- 313 (525)
++..+++..+|.++... +.+++|+..+++|++. .+..+++++|.++.. .+ ++++|+.+++++++..
T Consensus 40 p~~~~a~~~~~~~~~~~-----e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~----l~~~~~eal~~~~~al~~~p~ 110 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRD-----ERSERAFKLTRDAIELNAANYTVWHFRRVLLKS----LQKDLHEEMNYITAIIEEQPK 110 (315)
T ss_dssp HHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHHHh
Confidence 45578889999999888 4899999999999986 788999999999987 54 7999999999998874
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+..++.++|.++.. .+++++|+.+++++++. .+..+++++|.++.. .+++++|+.+|+++++. .+..
T Consensus 111 ~~~a~~~~~~~~~~-----l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al~~~~~al~~~p~n~~ 181 (315)
T d2h6fa1 111 NYQVWHHRRVLVEW-----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNS 181 (315)
T ss_dssp CHHHHHHHHHHHHH-----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHH
T ss_pred hhhHHHHHhHHHHh-----hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHCCccHH
Confidence 89999999999987 67999999999999976 588999999999999 99999999999999987 6889
Q ss_pred HHHHHHHHHHcCCC--CcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----ChHHHHHH
Q 009801 390 AFYQLAKMFHTGVG--LKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL----GYEVAQSN 461 (525)
Q Consensus 390 a~~~l~~~y~~g~g--~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~a~~~ 461 (525)
+++++|.++..... ..+.+++|+..+.++++..| ..+++.++.++.. ....++...++++++. .++.++..
T Consensus 182 a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (315)
T d2h6fa1 182 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAF 260 (315)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHH
Confidence 99999999875322 34458999999999999975 6778888887554 4468888889888765 35667777
Q ss_pred HHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 462 la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
++.+|..... .........+++|+.+++.-.+.
T Consensus 261 l~~~y~~~~~-------~~~~~~~~~~~ka~~l~~~l~~~ 293 (315)
T d2h6fa1 261 LVDIYEDMLE-------NQCDNKEDILNKALELCEILAKE 293 (315)
T ss_dssp HHHHHHHHHH-------TTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHh
Confidence 7777754211 12223355677787777764443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=4e-14 Score=135.11 Aligned_cols=263 Identities=9% Similarity=-0.030 Sum_probs=208.7
Q ss_pred ChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcCC--C-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh
Q 009801 123 DPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEGG--N-----IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFL 195 (525)
Q Consensus 123 ~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~-----~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~ 195 (525)
+++.....|.++.. .|++++|+.+|+++++.. + ..++..+|.+|...|++++|+..|+++++..+....
T Consensus 11 ~ae~~~lrA~~~~~----~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 86 (366)
T d1hz4a_ 11 HAEFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 86 (366)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 35566777888887 899999999999998742 2 357889999999999999999999999876443210
Q ss_pred ccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHh
Q 009801 196 ISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAAD 275 (525)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~ 275 (525)
.+....++..++.++... +++..|...+.+++.
T Consensus 87 ------------------------------------------~~~~~~~~~~~~~~~~~~-----~~~~~a~~~~~~al~ 119 (366)
T d1hz4a_ 87 ------------------------------------------WHYALWSLIQQSEILFAQ-----GFLQTAWETQEKAFQ 119 (366)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 011245677888888877 499999999999875
Q ss_pred c----C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCccCHHH
Q 009801 276 K----G------EPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-------LYSAYNGIGYLYVKGYGVEKKNYTK 338 (525)
Q Consensus 276 ~----~------~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~~ 338 (525)
. . ...+...+|.++.. .++++.+..+++++.... ...+...++..+.. .+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 190 (366)
T d1hz4a_ 120 LINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-----RGDLDN 190 (366)
T ss_dssp HHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-----HTCHHH
T ss_pred HhHhcccchhhHHHHHHHHHHHHHHH----hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh-----hhhHHH
Confidence 3 1 13467789999998 999999999999998642 45677778888775 558999
Q ss_pred HHHHHHHHHhC----C-----ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCC
Q 009801 339 AKEYFEKAADN----E-----EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG------HQKAFYQLAKMFHTGVG 403 (525)
Q Consensus 339 A~~~~~~a~~~----~-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~l~~~y~~g~g 403 (525)
+...+.++... . .+.++..++.++.. .+++++|..+++++.+.. ......++|.++..
T Consensus 191 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 263 (366)
T d1hz4a_ 191 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--- 263 (366)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH---
Confidence 99999888653 1 23456778899999 999999999999987652 24567788999998
Q ss_pred CcCCHHHHHHHHHHHHHc----C----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 404 LKKNLHMATALYKLVAER----G----PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 404 ~~~~~~~A~~~~~~a~~~----~----~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
.+++++|+.++++++.. + ...++..+|.++...|++++|+..+++|++.
T Consensus 264 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 264 -LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999854 2 2457889999999999999999999999875
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.7e-14 Score=131.93 Aligned_cols=80 Identities=8% Similarity=-0.168 Sum_probs=50.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--
Q 009801 238 QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ-- 313 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-- 313 (525)
+|+++.+++.+|.+|...+ ++++|+..|+++++. +++.++.++|.+|.. .+++++|+..|+++++..
T Consensus 67 ~p~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~ 137 (259)
T d1xnfa_ 67 RPDMPEVFNYLGIYLTQAG-----NFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPN 137 (259)
T ss_dssp CCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHhhhchHHHHHH-----HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH----HhhHHHHHHHHHHHHhhccc
Confidence 4556666677777776663 677777777776654 456666777777666 667777777777766553
Q ss_pred CHHHHHHHHHHHH
Q 009801 314 LYSAYNGIGYLYV 326 (525)
Q Consensus 314 ~~~a~~~lg~~~~ 326 (525)
+......++..+.
T Consensus 138 ~~~~~~~~~~~~~ 150 (259)
T d1xnfa_ 138 DPFRSLWLYLAEQ 150 (259)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3444444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=5.2e-15 Score=135.36 Aligned_cols=212 Identities=12% Similarity=0.022 Sum_probs=155.9
Q ss_pred CcHHHHHHHHHHHH------cCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCC
Q 009801 225 EDDEAFQILEYQAQ------KGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVE 296 (525)
Q Consensus 225 ~~~~A~~~~~~~~~------~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~ 296 (525)
+.+.|+..+++... +..+.+++.+|.+|...| ++++|+..|+++++. +++.+++.+|.+|.. .
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g-----~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~ 84 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG-----LRALARNDFSQALAIRPDMPEVFNYLGIYLTQ----A 84 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHhhccCCCCHHHHhhhchHHHH----H
Confidence 34556666666543 245679999999999985 999999999999875 789999999999999 9
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCCCcCCH
Q 009801 297 RNYTKALEWLTHAARQQ--LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIGVKRDV 372 (525)
Q Consensus 297 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~~~ 372 (525)
+++++|+..|+++++.. ++.++.++|.++.. .|++++|+..|+++++.. ++.....++..+.. .+..
T Consensus 85 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~ 155 (259)
T d1xnfa_ 85 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK----LDEK 155 (259)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCHH
T ss_pred HHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-----HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH----hhhH
Confidence 99999999999999864 78999999999987 579999999999998774 55666777777766 5554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009801 373 KLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRM 450 (525)
Q Consensus 373 ~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a 450 (525)
..+..................+...+.......+..+.+...+..+.... ...+++.+|.++...|++++|+.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (259)
T d1xnfa_ 156 QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235 (259)
T ss_dssp HHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444444443222222333333321112233444444444444433 3568889999999999999999999999
Q ss_pred HHcC
Q 009801 451 AELG 454 (525)
Q Consensus 451 ~~~~ 454 (525)
++..
T Consensus 236 l~~~ 239 (259)
T d1xnfa_ 236 VANN 239 (259)
T ss_dssp HTTC
T ss_pred HHcC
Confidence 9874
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.4e-13 Score=131.17 Aligned_cols=264 Identities=10% Similarity=-0.028 Sum_probs=200.4
Q ss_pred CcccHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHh--cCC-----hHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC
Q 009801 85 INGSYYITISKMMSAVTNGDVRVMEEATSEVESAAM--EGD-----PHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG 157 (525)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~-----~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 157 (525)
++.....|.+++. .|++++|+.+++++.+ +.+ ..++..+|.+|.. .|++++|+.+|+++++.
T Consensus 12 ae~~~lrA~~~~~-------~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~ 80 (366)
T d1hz4a_ 12 AEFNALRAQVAIN-------DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQM 80 (366)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 4445556776665 8889999999999764 333 3578889999998 99999999999999762
Q ss_pred ----C----CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHH
Q 009801 158 ----G----NIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEA 229 (525)
Q Consensus 158 ----~----~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 229 (525)
+ ...++..++..+...+++..|+..+.+++.........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~--------------------------------- 127 (366)
T d1hz4a_ 81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE--------------------------------- 127 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT---------------------------------
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc---------------------------------
Confidence 2 24677889999999999999999999987754432110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHcCCCCCCCHHHH
Q 009801 230 FQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK-------GEPQSMEFLGEIYARGAGVERNYTKA 302 (525)
Q Consensus 230 ~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~~~~~~~~~A 302 (525)
...........+|.++... ++++.|..+++++... ....+...++..+.. .+++.++
T Consensus 128 -------~~~~~~~~~~~la~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a 191 (366)
T d1hz4a_ 128 -------QLPMHEFLVRIRAQLLWAW-----ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNA 191 (366)
T ss_dssp -------TSTHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHH
T ss_pred -------hhhHHHHHHHHHHHHHHHh-----cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh----hhhHHHH
Confidence 0001234566788888777 4899999999888764 234677778888887 8889999
Q ss_pred HHHHHHHHHcC---------CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC------ChhHHHHHHHHHHcCCC
Q 009801 303 LEWLTHAARQQ---------LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE------EAGGHYNLGVMYYKGIG 367 (525)
Q Consensus 303 ~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~~ 367 (525)
...+.++.... ...+...++.++.. .+++++|..+++++++.. ....+.++|.+|..
T Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 263 (366)
T d1hz4a_ 192 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--- 263 (366)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH---
Confidence 99888886531 23456667777765 568999999999987652 23456778999999
Q ss_pred CcCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 368 VKRDVKLACKYFLVAANA--------GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAER 421 (525)
Q Consensus 368 ~~~~~~~A~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~ 421 (525)
.+++++|..++++++.. ....++..+|.+|.. .|++++|++.+++|++.
T Consensus 264 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 264 -LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ----AGRKSDAQRVLLDALKL 320 (366)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 99999999999988743 235678889999997 89999999999999875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=2.7e-14 Score=135.95 Aligned_cols=245 Identities=5% Similarity=-0.133 Sum_probs=181.4
Q ss_pred HcCCHHHHHHHHHHHHhcC-----CCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 009801 238 QKGNAGAMYKIGLFYYFGL-----RGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAA 310 (525)
Q Consensus 238 ~~~~~~a~~~Lg~~y~~~~-----~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~ 310 (525)
+|+++.++...+.++...+ ....+++.+|+.+++++++. .++.+++.+|.++..-. .+++++|+.++++++
T Consensus 59 ~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~al 136 (334)
T d1dcea1 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP--EPNWARELELCARFL 136 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS--SCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc--cccHHHHHHHHHHHH
Confidence 4456666666555543321 00123578999999999875 67889999998887611 346899999999998
Q ss_pred HcC--CHHHH-HHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc
Q 009801 311 RQQ--LYSAY-NGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA 385 (525)
Q Consensus 311 ~~~--~~~a~-~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 385 (525)
+.. +..++ ..+|.++.. .+++++|+.+++++++. .+..+++++|.++.. .+++++|...++++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 207 (334)
T d1dcea1 137 EADERNFHCWDYRRFVAAQA-----AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ----LHPQPDSGPQGRLPENV 207 (334)
T ss_dssp HHCTTCHHHHHHHHHHHHHT-----CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH----HSCCCCSSSCCSSCHHH
T ss_pred hhCchhhhhhhhHHHHHHHh-----ccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhHHh
Confidence 874 56665 466677765 45899999999999877 578899999999999 88888888777776665
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHH
Q 009801 386 GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELG--YEVAQSN 461 (525)
Q Consensus 386 ~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~a~~~ 461 (525)
..... .+...+.. .+..++|...|.+++...+ ..++..++..+...|++.+|+..+.++++.+ +..++..
T Consensus 208 ~~~~~--~~~~~~~~----l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 281 (334)
T d1dcea1 208 LLKEL--ELVQNAFF----TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 281 (334)
T ss_dssp HHHHH--HHHHHHHH----HCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHH--HHHHHHHH----hcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHH
Confidence 22211 11122222 3455678899999988864 4566678888899999999999999998774 6778889
Q ss_pred HHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 009801 462 AAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 462 la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
+|.++.. .+++++|+.+|+++++.+ ++..+..|+..+.
T Consensus 282 l~~~~~~----------------~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 282 LMRALDP----------------LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHCT----------------GGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH----------------CCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 9999987 789999999999999876 4666667776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.2e-13 Score=131.36 Aligned_cols=209 Identities=4% Similarity=-0.150 Sum_probs=151.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSM-EFLGEIYARGAGVERNYTKALEWLTHAARQQ 313 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~-~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 313 (525)
..|.++.+++.+|.++...+ ..++++|+.++++++.. .+..++ ..+|.++.. .+.+++|+.+++++++.+
T Consensus 102 ~~pk~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~Al~~~~~~i~~~ 174 (334)
T d1dcea1 102 VNPKSYGTWHHRCWLLSRLP---EPNWARELELCARFLEADERNFHCWDYRRFVAAQA----AVAPAEELAFTDSLITRN 174 (334)
T ss_dssp HCTTCHHHHHHHHHHHHTCS---SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----CCCHHHHHHHHHTTTTTT
T ss_pred hCCCcHHHHHHhhHHHHHhc---cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh----ccccHHHHHHHHHHHHcC
Confidence 34577888888888887652 24688999999998876 445664 467788877 888999999999988764
Q ss_pred --CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 009801 314 --LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQK 389 (525)
Q Consensus 314 --~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 389 (525)
+..++.++|.++.. .+++++|+..++++.+..... ..+...+.. .+...++...|.+++.. .+..
T Consensus 175 p~~~~a~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~----l~~~~~a~~~~~~~l~~~~~~~~ 243 (334)
T d1dcea1 175 FSNYSSWHYRSCLLPQ-----LHPQPDSGPQGRLPENVLLKE--LELVQNAFF----TDPNDQSAWFYHRWLLGRAEPLF 243 (334)
T ss_dssp CCCHHHHHHHHHHHHH-----HSCCCCSSSCCSSCHHHHHHH--HHHHHHHHH----HCSSCSHHHHHHHHHHSCCCCSS
T ss_pred CCCHHHHHHHHHHHHH-----hcCHHHHHHHHHHhHHhHHHH--HHHHHHHHH----hcchhHHHHHHHHHHHhCcchhh
Confidence 78899999999876 445656655555444331111 122222333 44455678888888766 4555
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCh--HHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAELGY--EVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~a~~~la~~ 465 (525)
++..++.++.. .+++++|+..+.++++.++ ..++..+|.++...|++++|+.+|+++++.++ ...+.+|+..
T Consensus 244 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~ 319 (334)
T d1dcea1 244 RCELSVEKSTV----LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 319 (334)
T ss_dssp SCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence 66777888876 7889999999999988875 56777899999999999999999999988753 4566667666
Q ss_pred Hh
Q 009801 466 LD 467 (525)
Q Consensus 466 ~~ 467 (525)
+.
T Consensus 320 ~~ 321 (334)
T d1dcea1 320 FL 321 (334)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=7e-14 Score=140.29 Aligned_cols=214 Identities=14% Similarity=0.116 Sum_probs=126.9
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHcCCCCCCCHHHHH
Q 009801 228 EAFQILEYQA--QKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE--PQSMEFLGEIYARGAGVERNYTKAL 303 (525)
Q Consensus 228 ~A~~~~~~~~--~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~~~~~~~~~A~ 303 (525)
+|+++|+++. +++.+++++++|.+|. ..+++++| |++++..+. +.++...+.++.. .+..++
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~-----~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~------~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWT-----SRQALQDL---YQKMLVTDLEYALDKKVEQDLWNH------AFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHH-----HHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHH------HTHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHH-----HHchHHHH---HHHHHHcChhhHHHHhHHHHHHHH------HHHHHH
Confidence 7888888874 5577788888887772 33445544 777776543 2333333333322 355677
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHH
Q 009801 304 EWLTHAARQQ-----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLAC 376 (525)
Q Consensus 304 ~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~ 376 (525)
..+++..+.. .......++.++.. .+.++.|+..++++.+. .+..++.++|..+.. .++..+|+
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a-----~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----~~~~~~A~ 140 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAA-----SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----QTHTSAIV 140 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHH-----HHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----CCCHHHHH
Confidence 7777776543 11122223333332 33667777766666544 466778888888888 88888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 009801 377 KYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL- 453 (525)
Q Consensus 377 ~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~- 453 (525)
..+++++......++.++|.++.. .+++++|+.+|++|++..| ..++++||.++...|++.+|+.+|.+|+..
T Consensus 141 ~~~~~al~~~~~~~~~~LG~l~~~----~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 141 KPQSSSCSYICQHCLVHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 888888887777888888888887 8888888888888888875 567888888888888888888888888865
Q ss_pred -ChHHHHHHHHHHHhh
Q 009801 454 -GYEVAQSNAAWILDK 468 (525)
Q Consensus 454 -~~~~a~~~la~~~~~ 468 (525)
..+.|..||+.++..
T Consensus 217 ~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 217 FPFPAASTNLQKALSK 232 (497)
T ss_dssp BCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 578888888887765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=8.2e-12 Score=115.87 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=131.7
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhh
Q 009801 141 ERNKGKAFLYHHFAAEGGNIQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALR 220 (525)
Q Consensus 141 ~~d~~~A~~~~~~a~~~~~~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (525)
..++++|.++|.+| |.+|...+++++|++.|.++++.....
T Consensus 30 ~~~~~~Aa~~y~~a------------a~~y~~~~~~~~A~~~y~kA~~~~~~~--------------------------- 70 (290)
T d1qqea_ 30 SYKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKA--------------------------- 70 (290)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHT---------------------------
T ss_pred cccHHHHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHHHHHc---------------------------
Confidence 33567777777766 567878888888888888877642211
Q ss_pred hccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcC
Q 009801 221 KSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARG 292 (525)
Q Consensus 221 ~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g 292 (525)
++.. +.+.++.++|.+|...+ ++++|+..|+++++. ++ ..++..+|.+|...
T Consensus 71 ---~~~~------------~~a~~~~~~g~~y~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 130 (290)
T d1qqea_ 71 ---GNED------------EAGNTYVEAYKCFKSGG-----NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (290)
T ss_dssp ---TCHH------------HHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCH------------HHHHHHHHHHHHHHHhC-----CcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH
Confidence 1111 12457778888887774 899999999988764 32 45677788877541
Q ss_pred CCCCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--C-------hhHH
Q 009801 293 AGVERNYTKALEWLTHAARQ----Q----LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--E-------AGGH 355 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~-------~~a~ 355 (525)
.+++++|+.+|+++++. + ...++.++|.++.. .|++++|+.+|++++... + ...+
T Consensus 131 ---~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~-----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 131 ---LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH-----cChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 47888888888888753 1 23456777777765 457777777777776542 1 1234
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 356 YNLGVMYYKGIGVKRDVKLACKYFLVAANAGH-------QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 356 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
...|.++.. .+++..|...++++.+... ......+...+..+ ....+++|+..|.++.+.++
T Consensus 203 ~~~~~~~l~----~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~--d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 203 LKKGLCQLA----ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG--DSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT--CTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHH----hccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCH
Confidence 566667766 6777777777777655421 11223344444431 23446666666665554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.1e-13 Score=135.49 Aligned_cols=201 Identities=11% Similarity=-0.018 Sum_probs=130.5
Q ss_pred ccchhhhhHhhhccCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcC----CH-HHH
Q 009801 210 NGAEENKGALRKSRGEDDEAFQILEYQAQK--GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKG----EP-QSM 282 (525)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~----~~-~a~ 282 (525)
.....+++.++...+++++| |++++.. ..+.++...+.++ +. .+.+++..+++..+.. .. ...
T Consensus 20 a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw-~~------~y~~~ie~~r~~~k~~~~~~~~~~~~ 89 (497)
T d1ya0a1 20 TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW-NH------AFKNQITTLQGQAKNRANPNRSEVQA 89 (497)
T ss_dssp TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH-HH------HTHHHHHHHHHHHSCSSCTTTTHHHH
T ss_pred HHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH-HH------HHHHHHHHHHHhcccccCccHHHHHH
Confidence 34467788888888888887 6665433 3333433333333 11 3567888888887642 12 223
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHH
Q 009801 283 EFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGV 360 (525)
Q Consensus 283 ~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 360 (525)
..++.++.. .+.++.|+..++++... .+..++.++|..+.. .++.++|+..+++++..+...++.++|.
T Consensus 90 ~~~~~l~~a----~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~LG~ 160 (497)
T d1ya0a1 90 NLSLFLEAA----SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK-----QTHTSAIVKPQSSSCSYICQHCLVHLGD 160 (497)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHTC------------------------------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh-----CCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334555555 67788888888887654 467788999999876 5699999999999998887889999999
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Q 009801 361 MYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG--PWSSLSRWALESYL 436 (525)
Q Consensus 361 ~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~ 436 (525)
++.. .+++++|+.+|++|++. ++..++++||.++.. .++..+|+.+|.+|+... .+.|..+|+.++..
T Consensus 161 l~~~----~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~----~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 161 IARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHH----cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999 99999999999999987 688999999999998 999999999999999886 47788899876654
Q ss_pred c
Q 009801 437 K 437 (525)
Q Consensus 437 ~ 437 (525)
.
T Consensus 233 ~ 233 (497)
T d1ya0a1 233 A 233 (497)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=4.1e-11 Score=111.01 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=158.3
Q ss_pred CChHhHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCccCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHhccc
Q 009801 103 GDVRVMEEATSEVESAAMEGDPHARSVLGFLYGMGMMRERNKGKAFLYHHFAAEG----GN----IQSKMAVAYTYLRQD 174 (525)
Q Consensus 103 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~la~~y~~~~ 174 (525)
....++++|..+|.++ |.+|.. .+++++|++.|++|++. ++ ..++.++|.+|...+
T Consensus 28 ~~~~~~~~Aa~~y~~a------------a~~y~~----~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~ 91 (290)
T d1qqea_ 28 SDSYKFEEAADLCVQA------------ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91 (290)
T ss_dssp CSHHHHHHHHHHHHHH------------HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CccccHHHHHHHHHHH------------HHHHHH----CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 4466789999888775 667887 88999999999999863 33 357889999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009801 175 MHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAGAMYKIGLFYYF 254 (525)
Q Consensus 175 ~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~a~~~Lg~~y~~ 254 (525)
++++|++.|+++++..+.. ++...+ ..++..+|.+|..
T Consensus 92 ~~~~A~~~~~~a~~~~~~~------------------------------~~~~~~------------~~~~~~l~~~~~~ 129 (290)
T d1qqea_ 92 NSVNAVDSLENAIQIFTHR------------------------------GQFRRG------------ANFKFELGEILEN 129 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHT------------------------------TCHHHH------------HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhHHhhhc------------------------------ccchhH------------HHHHHHHHHhHhh
Confidence 9999999999987754322 111111 4567788888864
Q ss_pred cCCCCccCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---------CHHH
Q 009801 255 GLRGLRRDRTKALMWFSKAADK----GE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ---------LYSA 317 (525)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a 317 (525)
.. +++++|+.+|+++++. ++ ..++.++|.+|.. .+++++|+.+|++++... ....
T Consensus 130 ~~----~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 130 DL----HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp TT----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 31 5999999999999864 22 3568889999999 999999999999998753 1244
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCC-------hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC
Q 009801 318 YNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEE-------AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG 386 (525)
Q Consensus 318 ~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~ 386 (525)
+..+|.++.. .+++..|...++++.+.+. ......|...+..+ ....+++|+..|.++.+.+
T Consensus 202 ~~~~~~~~l~-----~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~--d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 202 FLKKGLCQLA-----ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG--DSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHH-----TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT--CTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH-----hccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcC
Confidence 5677877765 4699999999999987632 22345566666652 2456899999998766664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.2e-11 Score=103.38 Aligned_cols=123 Identities=18% Similarity=0.113 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWAL 432 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~ 432 (525)
+++.|..+.. .+++++|+..|+++ ...++.+++++|.+|.. .+++++|+.+|++|++.+| +.+++++|.
T Consensus 8 l~~~g~~~~~----~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~----~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~ 78 (192)
T d1hh8a_ 8 LWNEGVLAAD----KKDWKGALDAFSAV-QDPHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQRGM 78 (192)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4566788888 88999999888864 33577888899999987 8899999999999988874 778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc------------------ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHH
Q 009801 433 ESYLKGDVGKAFLLYSRMAEL------------------GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (525)
Q Consensus 433 ~~~~~g~~~~A~~~~~~a~~~------------------~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (525)
++..+|++++|+..|++|+.. ....+++++|.++.. .+++++|+..
T Consensus 79 ~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~----------------~~~~~~A~~~ 142 (192)
T d1hh8a_ 79 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----------------KEEWKKAEEQ 142 (192)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH----------------CCCHHHHHHH
Confidence 999999999999999998753 125788999999988 7789999999
Q ss_pred HHHHHhCC
Q 009801 495 WWQASEQG 502 (525)
Q Consensus 495 ~~~a~~~~ 502 (525)
+++|++..
T Consensus 143 l~~A~~~~ 150 (192)
T d1hh8a_ 143 LALATSMK 150 (192)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 99999754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=8.1e-11 Score=101.52 Aligned_cols=121 Identities=19% Similarity=0.165 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 009801 319 NGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAK 396 (525)
Q Consensus 319 ~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~ 396 (525)
++.|..+.. .+++++|++.|.++ ...++.+++++|.+|.. .+++++|+.+|++|++. .++.+++++|.
T Consensus 9 ~~~g~~~~~-----~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~----~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~ 78 (192)
T d1hh8a_ 9 WNEGVLAAD-----KKDWKGALDAFSAV-QDPHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQRGM 78 (192)
T ss_dssp HHHHHHHHH-----TTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHH-----CCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 344555544 45677777776653 23456667777777777 77777777777777665 46667777777
Q ss_pred HHHcCCCCcCCHHHHHHHHHHHHHcC------------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 397 MFHTGVGLKKNLHMATALYKLVAERG------------------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 397 ~y~~g~g~~~~~~~A~~~~~~a~~~~------------------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
++.. .+++++|+..|++|+... ..+.++++|.++...|++++|+..+++|+..
T Consensus 79 ~~~~----~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 79 LYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHh----hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7766 677777777777776531 1356788999999999999999999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.1e-10 Score=89.10 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 391 FYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 391 ~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
+...|..+.. .+++++|+..|+++++.+| +.++..+|.++..+|++++|+..++++++. +++.+++++|.++
T Consensus 6 l~~~g~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 6 LKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence 3345666655 6677777777777776654 556666777777777777777777777654 4666777777777
Q ss_pred hhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 009801 467 DKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG--NEHAALLIGDAY 514 (525)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y 514 (525)
.. .+++++|+..|+++++.. +++++..++.+.
T Consensus 82 ~~----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 82 EF----------------LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HH----------------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HH----------------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 66 556677777777776643 566666666553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2e-09 Score=89.60 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW 430 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 430 (525)
+...|..|.. .+++++|+.+|+++++. +++.++.++|.++.. .+++++|+..|+++++.+| ..++..+
T Consensus 13 l~~~gn~~~~----~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~p~~~~a~~~~ 84 (159)
T d1a17a_ 13 LKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGYYRR 84 (159)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh----ccccchHHHHHHHHHHHcccchHHHHHH
Confidence 4455778888 88888888888888876 678888888888887 8888888888888888864 6788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
|.++..+|++++|+.++++++.. .++.++..++.+.
T Consensus 85 g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 85 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 88888888999998888888876 4677777766654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=9.3e-10 Score=86.29 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHH
Q 009801 355 HYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRW 430 (525)
Q Consensus 355 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 430 (525)
+...|..+.. .+++++|+..|.++++. .++.++.++|.+|.. .+++++|+..+.++++.+| +.+++++
T Consensus 6 l~~~g~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~ 77 (117)
T d1elwa_ 6 LKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGYSRK 77 (117)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchhhhhcccccccc----cccccccchhhhhHHHhccchhhHHHHH
Confidence 3456777777 77888888888887766 567777778888877 7788888888888877753 6677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
|.++..+|++++|+..|+++++. .++.++.+++.+
T Consensus 78 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 78 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888888888888765 466666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2e-09 Score=89.57 Aligned_cols=80 Identities=13% Similarity=-0.154 Sum_probs=62.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQ- 313 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~- 313 (525)
.+|+++.+++++|.+|...+ ++++|+..|+++++. .++.++..+|.++.. .+++++|+.+|++++...
T Consensus 39 ~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~----~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 39 LNPSNAIYYGNRSLAYLRTE-----CYGYALGDATRAIELDKKYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp HSTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHST
T ss_pred cchhhhhhhhhhHHHHHhcc-----ccchHHHHHHHHHHHcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Confidence 34567888888888888774 888888888888764 567888888888888 888888888888887763
Q ss_pred -CHHHHHHHHHHH
Q 009801 314 -LYSAYNGIGYLY 325 (525)
Q Consensus 314 -~~~a~~~lg~~~ 325 (525)
++.+...++.+.
T Consensus 110 ~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 110 HDKDAKMKYQECN 122 (159)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 677776666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=5.5e-10 Score=89.22 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
..+..+|..+.. .+++++|+.+|+++++.+| ..++.++|.++..+|++++|+..+++|++. .++.++.++|.
T Consensus 5 ~~~k~~G~~~~~----~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~ 80 (128)
T d1elra_ 5 LKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445678988887 8999999999999999975 678889999999999999999999999875 33444455555
Q ss_pred HHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 009801 465 ILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG-NEHAALLIGD 512 (525)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~ 512 (525)
+|...|+.... .+++++|+.+|++++... +++.+..+..
T Consensus 81 ~~~~lg~~~~~---------~~~~~~A~~~~~kal~~~~~~~~~~~l~~ 120 (128)
T d1elra_ 81 AYARIGNSYFK---------EEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120 (128)
T ss_dssp HHHHHHHHHHH---------TTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 55444433332 558999999999998754 6776666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=1.5e-09 Score=94.03 Aligned_cols=98 Identities=15% Similarity=0.040 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 009801 313 QLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQ 388 (525)
Q Consensus 313 ~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~ 388 (525)
++++.+...|..++. .|++++|+.+|++|++. .++.+++++|.+|.. .+++++|+.+|++|++. +++
T Consensus 2 ~~a~~l~~~Gn~~~~-----~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai~~~~~al~l~p~~~ 72 (201)
T d2c2la1 2 PSAQELKEQGNRLFV-----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSV 72 (201)
T ss_dssp CCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCH
T ss_pred hhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh----hhhhhhhhHHHHHHHHhCCCcH
Confidence 356667777777776 66888888888887755 567777788888887 78888888888887765 567
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP 423 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 423 (525)
.+++++|.+|.. .+++++|+.+|+++++..|
T Consensus 73 ~a~~~lg~~~~~----l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 73 KAHFFLGQCQLE----MESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCc
Confidence 777888888876 7788888888888776653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.01 E-value=1.3e-09 Score=84.75 Aligned_cols=91 Identities=11% Similarity=0.044 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHH
Q 009801 353 GGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLS 428 (525)
Q Consensus 353 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 428 (525)
+..+.+|..+.. .+++++|+..|+++++. .++.++.++|.++.. .+++++|+.+|+++++.+| ..+++
T Consensus 17 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~ 88 (112)
T d1hxia_ 17 ENPMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHA 88 (112)
T ss_dssp SCHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHH----HhhhHHHHHHHhhhcccccccchhhhhhhhhhhh----hhhHHHhhcccccccccccccccchH
Confidence 445788999999 99999999999999877 578999999999988 8999999999999999875 77888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009801 429 RWALESYLKGDVGKAFLLYSRMA 451 (525)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~a~ 451 (525)
.+|.++...|++++|+.++++.+
T Consensus 89 ~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 89 ALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999998875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=1.7e-09 Score=93.74 Aligned_cols=97 Identities=12% Similarity=-0.062 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hH
Q 009801 350 EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WS 425 (525)
Q Consensus 350 ~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~ 425 (525)
.++..+...|..|.. .+++++|+.+|++|++. .++.++.++|.+|.. .+++++|+.+|++|++.+| ..
T Consensus 2 ~~a~~l~~~Gn~~~~----~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai~~~~~al~l~p~~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCHH
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh----hhhhhhhhHHHHHHHHhCCCcHH
Confidence 356678899999999 99999999999999987 789999999999998 9999999999999999875 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009801 426 SLSRWALESYLKGDVGKAFLLYSRMAELG 454 (525)
Q Consensus 426 a~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 454 (525)
+++++|.++..+|++++|+.+|++|++..
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999763
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.99 E-value=3.4e-09 Score=82.23 Aligned_cols=90 Identities=12% Similarity=0.012 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHH
Q 009801 390 AFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWI 465 (525)
Q Consensus 390 a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~ 465 (525)
..+.+|..+.. .+++++|+..|++++..+| +.++..+|.++...|++++|+.+|+++++. .++.++.++|.+
T Consensus 18 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 18 NPMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 93 (112)
T ss_dssp CHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHH
Confidence 35778999988 9999999999999999975 789999999999999999999999999987 589999999999
Q ss_pred HhhhCCCccccCCCCCCCChHhHHHHHHHHHHHH
Q 009801 466 LDKYGEGSMCMGESGFCTDAERHQCAHSLWWQAS 499 (525)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 499 (525)
|.. .+++++|++.+++.+
T Consensus 94 y~~----------------~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTN----------------EHNANAALASLRAWL 111 (112)
T ss_dssp HHH----------------HHHHHHHHHHHHHHH
T ss_pred HHH----------------CCCHHHHHHHHHHHh
Confidence 999 889999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.7e-09 Score=83.11 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=67.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Q 009801 237 AQKGNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGE----PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ 312 (525)
Q Consensus 237 ~~~~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 312 (525)
.+|.++.+++++|.++... ...+++++|+..|++++..+. ..++++||.+|.. .|++++|+.+|+++++.
T Consensus 28 ~~p~~~~~~~n~a~~L~~s--~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~----~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 28 AGSVSKSTQFEYAWCLVRT--RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HSCCCHHHHHHHHHHHTTS--SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHh
Confidence 4568899999999998764 334577889999999987643 3478999999999 99999999999999876
Q ss_pred C--CHHHHHHHHHHHH
Q 009801 313 Q--LYSAYNGIGYLYV 326 (525)
Q Consensus 313 ~--~~~a~~~lg~~~~ 326 (525)
. +..+...++.+..
T Consensus 102 ~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 102 EPQNNQAKELERLIDK 117 (122)
T ss_dssp CTTCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH
Confidence 4 6788877776653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=4.4e-08 Score=82.09 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
.++.++|.+|.. .+++++|+.+++++++.+| +.+++++|.+++.+|++++|+..|+++++. +++.+...++.
T Consensus 63 ~~~~nla~~y~k----~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 63 ASHLNLAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh----hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456789999998 8999999999999999875 778999999999999999999999999887 57888888888
Q ss_pred HHhh
Q 009801 465 ILDK 468 (525)
Q Consensus 465 ~~~~ 468 (525)
+...
T Consensus 139 ~~~~ 142 (170)
T d1p5qa1 139 CQQR 142 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.2e-08 Score=80.13 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=84.1
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC----hHHHHHH
Q 009801 357 NLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP----WSSLSRW 430 (525)
Q Consensus 357 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l 430 (525)
+|...+.. .+++++|.+.|++++.. .++.+++++|.++.. ....+++++|+..|++++..++ ..+++++
T Consensus 4 ~l~n~~~~----~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L 78 (122)
T d1nzna_ 4 AVLNELVS----VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcC----HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 45566667 78899999999998876 678899999988863 1124567789999999988764 3478899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhh
Q 009801 431 ALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDK 468 (525)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~ 468 (525)
|.+|+..|++++|+.+|+++++. ++..|...++.+...
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999876 567788877776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.3e-08 Score=80.90 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--------
Q 009801 354 GHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP-------- 423 (525)
Q Consensus 354 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------- 423 (525)
.+-.+|..+.. .+++++|+.+|+++++. .++.++.++|.+|.. .+++++|+.+++++++.++
T Consensus 6 ~~k~~G~~~~~----~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~ 77 (128)
T d1elra_ 6 KEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDYRQ 77 (128)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH----cCchHHHHHHHHHHHHhCcccHHHHHH
Confidence 44567888888 88888888888888776 467788888888887 7888888888888877642
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 -WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 -~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..++.++|.++...+++++|+.+|++++..
T Consensus 78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 235667888888888888888888888765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.87 E-value=3.2e-08 Score=82.93 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHH
Q 009801 387 HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNA 462 (525)
Q Consensus 387 ~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~l 462 (525)
...++.++|.+|.. .+++++|+..|.++++.+| +.+++++|.++..+|++++|+..|+++++. +++.+...+
T Consensus 76 ~~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l 151 (169)
T d1ihga1 76 ALSCVLNIGACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 151 (169)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHh----hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45677889999998 9999999999999999875 779999999999999999999999999987 578888888
Q ss_pred HHHHhh
Q 009801 463 AWILDK 468 (525)
Q Consensus 463 a~~~~~ 468 (525)
+.+...
T Consensus 152 ~~~~~~ 157 (169)
T d1ihga1 152 LKVKQK 157 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887755
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=5.4e-07 Score=83.30 Aligned_cols=210 Identities=9% Similarity=-0.014 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHcC-------CC---CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Q 009801 263 RTKALMWFSKAADK--GEPQSMEFLGEIYARG-------AG---VERNYTKALEWLTHAARQ---QLYSAYNGIGYLYVK 327 (525)
Q Consensus 263 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g-------~~---~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~ 327 (525)
...+...|++|+.. .++..|..-+...... .. ..+..++|...|++|++. .+...+...+.+...
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45566677777664 5666666655543220 00 023467788888888864 245566777777765
Q ss_pred CCCCCccCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 009801 328 GYGVEKKNYTKAKEYFEKAADNEE---AGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGV 402 (525)
Q Consensus 328 g~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~ 402 (525)
.+++++|...|+++++... ..++..++.+..+ .++.++|...|+++++. .....+...+.....
T Consensus 112 -----~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~----~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~-- 180 (308)
T d2onda1 112 -----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-- 180 (308)
T ss_dssp -----TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH--
T ss_pred -----cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence 4588888888888887632 3356777888888 88888888888888876 355556666655433
Q ss_pred CCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--h----HHHHHHHHHHHhhhCCCcc
Q 009801 403 GLKKNLHMATALYKLVAERG--PWSSLSRWALESYLKGDVGKAFLLYSRMAELG--Y----EVAQSNAAWILDKYGEGSM 474 (525)
Q Consensus 403 g~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~----~~a~~~la~~~~~~~~~~~ 474 (525)
..++.+.|...|++++... ++..+..++......|+++.|+..|++|+... + ...+.....+-..
T Consensus 181 -~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~------ 253 (308)
T d2onda1 181 -CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN------ 253 (308)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH------
T ss_pred -hccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH------
Confidence 2578888888999888775 35667777777888889999999999888752 1 2233344444444
Q ss_pred ccCCCCCCCChHhHHHHHHHHHHHHh
Q 009801 475 CMGESGFCTDAERHQCAHSLWWQASE 500 (525)
Q Consensus 475 ~~~~~~~~~~~~~~~~A~~~~~~a~~ 500 (525)
.|+.+.+.+.++++.+
T Consensus 254 ----------~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 254 ----------IGDLASILKVEKRRFT 269 (308)
T ss_dssp ----------HSCHHHHHHHHHHHHH
T ss_pred ----------cCCHHHHHHHHHHHHH
Confidence 3456677778887765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.8e-08 Score=83.36 Aligned_cols=75 Identities=13% Similarity=-0.034 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCC
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQG 502 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 502 (525)
..+.++|.+|..+|++++|+.+++++++. .++.+++++|.++.. .+++++|+.+|+++++.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----------------~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----------------VNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHH----------------hhhHHHHHHHHHHHHHhC
Confidence 35678999999999999999999999986 589999999999999 778999999999999864
Q ss_pred --CHHHHHHHHHHHH
Q 009801 503 --NEHAALLIGDAYY 515 (525)
Q Consensus 503 --~~~a~~~lg~~y~ 515 (525)
++.+...++.++.
T Consensus 127 P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 127 PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 8999988888764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=1.4e-06 Score=80.41 Aligned_cols=211 Identities=11% Similarity=0.052 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcC---------CCCccCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcC
Q 009801 227 DEAFQILEYQAQ--KGNAGAMYKIGLFYYFGL---------RGLRRDRTKALMWFSKAADK---GEPQSMEFLGEIYARG 292 (525)
Q Consensus 227 ~~A~~~~~~~~~--~~~~~a~~~Lg~~y~~~~---------~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g 292 (525)
+.+...|++++. +.+++.++..+......+ ....+..++|...|++|++. .+...+..++.++..
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~- 111 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-
Confidence 456667888755 478888888776654321 00123568899999999964 456778889999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHcCCC
Q 009801 293 AGVERNYTKALEWLTHAARQQ---LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNE--EAGGHYNLGVMYYKGIG 367 (525)
Q Consensus 293 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~ 367 (525)
.++.++|...|++++... ...++...+.+... .+++++|...|+++++.. +...+...+......
T Consensus 112 ---~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~-----~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~-- 181 (308)
T d2onda1 112 ---RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-- 181 (308)
T ss_dssp ---TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT--
T ss_pred ---cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--
Confidence 999999999999999864 24456777777765 468999999999999774 566777777764331
Q ss_pred CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--h----HHHHHHHHHHHhcCC
Q 009801 368 VKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--W----SSLSRWALESYLKGD 439 (525)
Q Consensus 368 ~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~l~~~~~~~g~ 439 (525)
.++.+.|...|+++++. .++..+...+.+... .+++++|...|++++...+ + ..+..........|+
T Consensus 182 -~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~----~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 182 -SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp -SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred -ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence 68999999999999987 678888888888887 8999999999999998753 2 233344444556799
Q ss_pred HHHHHHHHHHHHHc
Q 009801 440 VGKAFLLYSRMAEL 453 (525)
Q Consensus 440 ~~~A~~~~~~a~~~ 453 (525)
.+.+...++++.+.
T Consensus 257 ~~~~~~~~~r~~~~ 270 (308)
T d2onda1 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.81 E-value=1.4e-07 Score=78.75 Aligned_cols=76 Identities=16% Similarity=0.087 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
..+.++|.+|.. .+++++|+.+++++++.+| ..+++++|.++..+|++++|+..|+++++. +++.+...++.
T Consensus 65 ~~~~Nla~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 65 AAFLNLAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHH----hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456788999998 9999999999999998874 778999999999999999999999999876 57778888888
Q ss_pred HHhh
Q 009801 465 ILDK 468 (525)
Q Consensus 465 ~~~~ 468 (525)
+...
T Consensus 141 ~~~~ 144 (168)
T d1kt1a1 141 CQKK 144 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7755
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.75 E-value=1.4e-07 Score=77.36 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHH
Q 009801 389 KAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAW 464 (525)
Q Consensus 389 ~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~ 464 (525)
..+.++|.+|.. .+++++|+.+++++++.+| ..+++++|.++..+|++++|+.+|+++++. +++.+...++.
T Consensus 68 ~~~~Nla~~~~~----l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHH----hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 466789999998 8999999999999999975 679999999999999999999999999887 57888888887
Q ss_pred HHhh
Q 009801 465 ILDK 468 (525)
Q Consensus 465 ~~~~ 468 (525)
+...
T Consensus 144 ~~~k 147 (153)
T d2fbna1 144 CVNK 147 (153)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.74 E-value=1.3e-07 Score=77.49 Aligned_cols=75 Identities=13% Similarity=-0.142 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC-
Q 009801 425 SSLSRWALESYLKGDVGKAFLLYSRMAEL--GYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ- 501 (525)
Q Consensus 425 ~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 501 (525)
..+.++|.+++.+|++++|+.+++++++. .+..+++++|.++.. .+++++|+.+|+++++.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~----------------lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----------------FGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHH----------------cCCHHHHHHHHHHHHHhC
Confidence 35678999999999999999999999987 578999999999999 77899999999999886
Q ss_pred -CCHHHHHHHHHHHH
Q 009801 502 -GNEHAALLIGDAYY 515 (525)
Q Consensus 502 -~~~~a~~~lg~~y~ 515 (525)
+++++...++.+..
T Consensus 132 P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 132 PNNLDIRNSYELCVN 146 (153)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 47888888887754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.74 E-value=6.2e-08 Score=81.11 Aligned_cols=133 Identities=17% Similarity=0.100 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 358 (525)
+......|..+.. .+++.+|+..|+++++.... .... . ...+.. .++...+.++.++
T Consensus 27 a~~~~~~~~~~~~----~~~y~~Ai~~y~~al~~~~~------~~~~-------~-~~~~~~-----~~~~~~~~~~~nl 83 (169)
T d1ihga1 27 SEDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEG------SRAA-------A-EDADGA-----KLQPVALSCVLNI 83 (169)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH------HHHH-------S-CHHHHG-----GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhh------hhhh-------h-hhHHHH-----HhChhhHHHHHHH
Confidence 4456677888887 88888888888887653100 0000 0 111100 0111245677889
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHH
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES 434 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 434 (525)
|.+|.. .+++++|+..|.++++. +++.+++++|.+|.. .+++++|+..|+++++.+| ..+...++.+.
T Consensus 84 a~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 84 GACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHh----hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999 99999999999999986 688999999999998 8999999999999999975 55666666665
Q ss_pred HhcCCHHH
Q 009801 435 YLKGDVGK 442 (525)
Q Consensus 435 ~~~g~~~~ 442 (525)
.......+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=3.4e-08 Score=73.74 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--ChH
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERG---------PWSSLSRWALESYLKGDVGKAFLLYSRMAEL--GYE 456 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~ 456 (525)
++.++.+|.++.. .+++++|+.||++|++.. ...++.++|.+++..|++++|+.+|+++++. +++
T Consensus 5 addc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~ 80 (95)
T d1tjca_ 5 AEDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence 4556777777776 777777777777777552 1456778888888888888888888888876 577
Q ss_pred HHHHHHHHHHh
Q 009801 457 VAQSNAAWILD 467 (525)
Q Consensus 457 ~a~~~la~~~~ 467 (525)
.+++|++++..
T Consensus 81 ~a~~Nl~~~~~ 91 (95)
T d1tjca_ 81 RANGNLKYFEY 91 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=4.2e-08 Score=73.25 Aligned_cols=76 Identities=11% Similarity=-0.090 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHH
Q 009801 424 WSSLSRWALESYLKGDVGKAFLLYSRMAELG---------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSL 494 (525)
Q Consensus 424 ~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 494 (525)
++.++.+|.+++..|+|++|+.||++|++.. ...++.++|.++.+ .+++++|+.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----------------~g~~~~A~~~ 68 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----------------QGDLDKALLL 68 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----------------cCChHHHHHH
Confidence 5678899999999999999999999998651 36789999999999 7789999999
Q ss_pred HHHHHhCC--CHHHHHHHHHHHH
Q 009801 495 WWQASEQG--NEHAALLIGDAYY 515 (525)
Q Consensus 495 ~~~a~~~~--~~~a~~~lg~~y~ 515 (525)
|+++++.+ +++++.+|+.+..
T Consensus 69 y~~aL~l~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 69 TKKLLELDPEHQRANGNLKYFEY 91 (95)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999864 8999999987653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.71 E-value=1.5e-07 Score=78.50 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhCCChhHHHHH
Q 009801 279 PQSMEFLGEIYARGAGVERNYTKALEWLTHAARQQLYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADNEEAGGHYNL 358 (525)
Q Consensus 279 ~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 358 (525)
+..+...|..++. .+++.+|+.+|++|+..- ........ ........+ ....+.++
T Consensus 15 a~~~~e~G~~~~~----~~~~~~A~~~Y~~al~~~------------~~~~~~~~-~~~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFK----GGKYVQAVIQYGKIVSWL------------EMEYGLSE-KESKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH------------TTCCSCCH-HHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH------------HHhhccch-hhhhhcchh-------HHHHHHhH
Confidence 5566777888888 888888888888876531 00000001 111111111 23467789
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHH
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALES 434 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 434 (525)
|.+|.. .+++.+|+.+++++++. ++..+++++|.++.. .+++++|+.+|+++++.+| ..+...++.+.
T Consensus 71 a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 71 AMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHH----hhhcccchhhhhhhhhcccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999 99999999999999986 688999999999998 9999999999999999875 45666666665
Q ss_pred HhcCCH
Q 009801 435 YLKGDV 440 (525)
Q Consensus 435 ~~~g~~ 440 (525)
...+.+
T Consensus 143 ~~~~~~ 148 (168)
T d1kt1a1 143 KKAKEH 148 (168)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 554433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.65 E-value=8.1e-08 Score=77.95 Aligned_cols=97 Identities=4% Similarity=-0.136 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC------CCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC-
Q 009801 370 RDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGV------GLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKG- 438 (525)
Q Consensus 370 ~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~------g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g- 438 (525)
+.+++|+..|+++++. +++.+++++|.++..-. ...+.+++|+..|++|++.+| +.+++++|.+|..+|
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence 3344444444444433 34444444444443100 012445667777777777654 566777777766554
Q ss_pred ----------CHHHHHHHHHHHHHc--ChHHHHHHHHHHH
Q 009801 439 ----------DVGKAFLLYSRMAEL--GYEVAQSNAAWIL 466 (525)
Q Consensus 439 ----------~~~~A~~~~~~a~~~--~~~~a~~~la~~~ 466 (525)
++++|+.+|++|++. ++..++..|+.+.
T Consensus 91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 91 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 367788888888766 4555665555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.56 E-value=2.5e-07 Score=76.14 Aligned_cols=87 Identities=15% Similarity=-0.067 Sum_probs=69.8
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------
Q 009801 395 AKMFHTGVGLKKNLHMATALYKLVAERGP--------------WSSLSRWALESYLKGDVGKAFLLYSRMAELG------ 454 (525)
Q Consensus 395 ~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~------ 454 (525)
|..+.. .+++++|+..|++|+++.+ ..++.++|.++..+|++++|+..++++++..
T Consensus 16 g~~~~~----~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~ 91 (156)
T d2hr2a1 16 AQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 91 (156)
T ss_dssp HHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence 555555 6788888888888886532 2467789999999999999999999998641
Q ss_pred -------hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 455 -------YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 455 -------~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
...+++++|.+|.. .+++++|+.+|++|++.
T Consensus 92 ~~~~~~~~~~a~~~~g~~~~~----------------lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 92 NQDEGKLWISAVYSRALALDG----------------LGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp TSTHHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHhhhHHHHHH----------------HHHHHHHHHHHHHHHHh
Confidence 24478999999998 67899999999999874
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.54 E-value=2.2e-07 Score=75.36 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCC------CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC--
Q 009801 335 NYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGI------GVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGV-- 402 (525)
Q Consensus 335 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~------~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~-- 402 (525)
.+++|+..|+++++. +++++++++|.++..-. ...+.+++|+..|++|++. +++.+++++|.+|..-.
T Consensus 12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~ 91 (145)
T d1zu2a1 12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 91 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc
Confidence 344455555554332 34445555554443200 0023445666666666655 45666666666664300
Q ss_pred -C----CcCCHHHHHHHHHHHHHcCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 403 -G----LKKNLHMATALYKLVAERGPWSSLS--RWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 403 -g----~~~~~~~A~~~~~~a~~~~~~~a~~--~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+ ..+++++|+++|+++++.+|....+ .|+.. .+|...+.++.++
T Consensus 92 ~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~ 142 (145)
T d1zu2a1 92 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQ 142 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHS
T ss_pred hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 0 1245789999999999998755443 44433 4556666655544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.54 E-value=2.5e-07 Score=76.16 Aligned_cols=87 Identities=13% Similarity=-0.024 Sum_probs=68.8
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC-
Q 009801 359 GVMYYKGIGVKRDVKLACKYFLVAANAG--------------HQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP- 423 (525)
Q Consensus 359 g~~y~~g~~~~~~~~~A~~~~~~a~~~~--------------~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~- 423 (525)
|..+.. .+++++|+..|+++++.. .+.++.++|.+|.. .+++++|+..+++++...+
T Consensus 16 g~~~~~----~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~----lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 16 AQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH----cCccchhhHhhhhhhhcccc
Confidence 666666 777888888888877641 13567788888887 8888888888888876421
Q ss_pred ------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 424 ------------WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 424 ------------~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+++++|.++..+|++++|+..|++|++.
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 236789999999999999999999999875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.00017 Score=59.91 Aligned_cols=116 Identities=13% Similarity=0.037 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCCHHHH
Q 009801 314 LYSAYNGIGYLYVKGYGVEKKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAGHQKAF 391 (525)
Q Consensus 314 ~~~a~~~lg~~~~~g~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 391 (525)
..+++...|..... .|++++|+..|.+|+.. |+....+. .... +.. ....++.....++
T Consensus 10 ~f~~~~~~g~~~~~-----~g~~e~A~~~~~~AL~l~rG~~l~~~~-----------~~~w--~~~-~r~~l~~~~~~a~ 70 (179)
T d2ff4a2 10 RFVAEKTAGVHAAA-----AGRFEQASRHLSAALREWRGPVLDDLR-----------DFQF--VEP-FATALVEDKVLAH 70 (179)
T ss_dssp HHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTT--HHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCcccccccCc-----------chHH--HHH-HHHHHHHHHHHHH
Confidence 35677778887776 77999999999999876 22211110 0000 000 0111223356788
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009801 392 YQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAFLLYSRMAE 452 (525)
Q Consensus 392 ~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~~~~~~a~~ 452 (525)
..++.++.. .+++++|+.+++++++.+| ..++..++.++...|++.+|+..|+++..
T Consensus 71 ~~la~~~~~----~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 71 TAKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 899999998 9999999999999999985 77899999999999999999999999854
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.64 E-value=4.7e-05 Score=67.72 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=87.8
Q ss_pred ccCHHHHHHHHHHHHhC--CChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCH
Q 009801 333 KKNYTKAKEYFEKAADN--EEAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNL 408 (525)
Q Consensus 333 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~ 408 (525)
.|++++|+..++++++. +++.+...||.+|.. .+++++|+..|+++++. ++..+...++.++.. .+..
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~----~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a----~~~~ 80 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----AQAR 80 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cccc
Confidence 56999999999999877 688999999999999 99999999999999987 567777777777764 4455
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 409 HMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 409 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
+++...+.+.....+ .......+..+...|++++|+..++++.+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 554444333333332 334556788899999999999999999875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.0002 Score=59.42 Aligned_cols=117 Identities=6% Similarity=-0.134 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHc
Q 009801 160 IQSKMAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQK 239 (525)
Q Consensus 160 ~~a~~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 239 (525)
..++...|......|++++|+..|.+++.+.+..+... . ..+.. .........+
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~---------------~~~~w---~~~~r~~l~~ 64 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L---------------RDFQF---VEPFATALVE 64 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G---------------TTSTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C---------------cchHH---HHHHHHHHHH
Confidence 35667778888888888888888888876422211100 0 00000 0011112344
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 009801 240 GNAGAMYKIGLFYYFGLRGLRRDRTKALMWFSKAADK--GEPQSMEFLGEIYARGAGVERNYTKALEWLTHAAR 311 (525)
Q Consensus 240 ~~~~a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~ 311 (525)
....++..++.++...| ++++|+.++++++.. .+..++..|+.++.. .|++.+|+..|+++.+
T Consensus 65 ~~~~a~~~la~~~~~~g-----~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 65 DKVLAHTAKAEAEIACG-----RASAVIAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-----CchHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence 45678899999998884 999999999998875 678999999999999 9999999999999754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.43 E-value=0.00016 Score=64.19 Aligned_cols=113 Identities=10% Similarity=-0.059 Sum_probs=87.9
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCHHHHH
Q 009801 369 KRDVKLACKYFLVAANA--GHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP--WSSLSRWALESYLKGDVGKAF 444 (525)
Q Consensus 369 ~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~~g~~~~A~ 444 (525)
.+++++|+..|+++++. +++.+...++.++.. .|++++|+..++++++.+| ..+...++.++...+..+++.
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~----~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 78999999999999987 789999999999998 9999999999999999986 455666777776666666655
Q ss_pred HHHHHHHHcC---hHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhC
Q 009801 445 LLYSRMAELG---YEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQ 501 (525)
Q Consensus 445 ~~~~~a~~~~---~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 501 (525)
..+.+....+ ...++...+.++.. .+++++|+..++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~----------------~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMV----------------SQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHhc
Confidence 5444433332 23445556666666 67899999999998864
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.81 E-value=0.0044 Score=46.64 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009801 388 QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGP---WSSLSRWALESYLKGDVGKAFLLYSRMAEL 453 (525)
Q Consensus 388 ~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~ 453 (525)
..+.|+.|+++..- ....+.++++..++.++..++ -++++.||..++++|+|++|+.+++++++.
T Consensus 35 ~qt~F~YAw~Lv~S-~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44556666555431 113455566666666665543 245566666666666666666666666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.64 E-value=0.004 Score=46.90 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcC--C-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHHcCChH
Q 009801 351 EAGGHYNLGVMYYKGIGVKRDVKLACKYFLVAANAG--H-QKAFYQLAKMFHTGVGLKKNLHMATALYKLVAERGPWS 425 (525)
Q Consensus 351 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 425 (525)
.+.+.|+.|+++..... ..+.++++..++.+.+.+ + .+++++||..|.. .+++++|..+++++++.+|.+
T Consensus 34 s~qt~F~YAw~Lv~S~~-~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp CHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTC
T ss_pred CcchHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHccCCCc
Confidence 34566777777765221 455667777777776543 2 3577777777776 777777777777777776543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=1.3 Score=41.19 Aligned_cols=60 Identities=7% Similarity=-0.152 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHHHHHHHhhhCCCccccCCCCCCCChHhHHHHHHHHHHHHhCCC
Q 009801 428 SRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEGSMCMGESGFCTDAERHQCAHSLWWQASEQGN 503 (525)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 503 (525)
...+..++..|....|...+..++...++.-+..++.+-.. .+.+..|+.-..++-..++
T Consensus 385 ~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~----------------~g~~~~aI~a~~~~~~~d~ 444 (450)
T d1qsaa1 385 MARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFN----------------NQWWDLSVQATIAGKLWDH 444 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------CCChhHHHHHHHHHHccCc
Confidence 34567788999999999998888877777788888888877 5677888876665533333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.22 E-value=17 Score=31.78 Aligned_cols=248 Identities=12% Similarity=0.036 Sum_probs=132.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhhhhccCCCCCchhhhhcccchhhhhHhhhccCCcHHHHHHHHHHHHcCCHH
Q 009801 164 MAVAYTYLRQDMHDKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKGALRKSRGEDDEAFQILEYQAQKGNAG 243 (525)
Q Consensus 164 ~~la~~y~~~~~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 243 (525)
-..|..+...|.|+.|...|...-. .......+...++++.|.+..++ .++++
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d------------------------~~rl~~~~v~l~~~~~avd~~~k---~~~~~ 70 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN------------------------FGRLASTLVHLGEYQAAVDGARK---ANSTR 70 (336)
T ss_dssp -----------CTTTHHHHHHHTTC------------------------HHHHHHHHHTTTCHHHHHHHHHH---HTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC------------------------HHHHHHHHHhhccHHHHHHHHHH---cCCHH
Confidence 3456666667777777777764311 11233344567778888777654 36777
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 009801 244 AMYKIGLFYYFGLRGLRRDRTKALMWFSKAADKGEPQSMEFLGEIYARGAGVERNYTKALEWLTHAARQ--QLYSAYNGI 321 (525)
Q Consensus 244 a~~~Lg~~y~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l 321 (525)
.+..+.....+.. ....| ..- ......++.-...+-..|.. .+.+++.+.+++.++.. .+......+
T Consensus 71 ~~k~~~~~l~~~~-----e~~la-~i~-~~~~~~~~d~l~~~v~~ye~----~~~~e~Li~~Le~~~~~~~~~~~~~~~L 139 (336)
T d1b89a_ 71 TWKEVCFACVDGK-----EFRLA-QMC-GLHIVVHADELEELINYYQD----RGYFEELITMLEAALGLERAHMGMFTEL 139 (336)
T ss_dssp HHHHHHHHHHHTT-----CHHHH-HHT-TTTTTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHhCc-----HHHHH-HHH-HHHhhcCHHHHHHHHHHHHH----cCChHHHHHHHHHHHcCCccchHHHHHH
Confidence 8888877776552 22222 110 01112455555666777887 88999999999988754 367777888
Q ss_pred HHHHHhCCCCCccCHHHHHHHHHHHHhC-CChhH---------HHHHHHHHHcCCCCcCCHHHHHHHHHH----------
Q 009801 322 GYLYVKGYGVEKKNYTKAKEYFEKAADN-EEAGG---------HYNLGVMYYKGIGVKRDVKLACKYFLV---------- 381 (525)
Q Consensus 322 g~~~~~g~~~~~~~~~~A~~~~~~a~~~-~~~~a---------~~~lg~~y~~g~~~~~~~~~A~~~~~~---------- 381 (525)
+.+|.. . +.++-.+++++.... +-+.+ +-.+..+|.. .+++++|+...-.
T Consensus 140 ~~lyak-----~-~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~----~~~~~~A~~~~i~~~~~~~~~~~ 209 (336)
T d1b89a_ 140 AILYSK-----F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK----YEEYDNAIITMMNHPTDAWKEGQ 209 (336)
T ss_dssp HHHHHT-----T-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH----TTCHHHHHHHHHHSTTTTCCHHH
T ss_pred HHHHHH-----h-ChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHh----cCCHHHHHHHHHHcchhhhhHHH
Confidence 888864 3 677777777664322 21211 2345667777 7777777654332
Q ss_pred ----HHHcCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChH
Q 009801 382 ----AANAGHQKAFYQLAKMFHTGVGLKKNLHMATALYKLVAE-RGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYE 456 (525)
Q Consensus 382 ----a~~~~~~~a~~~l~~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 456 (525)
..+..+++.++..-..|.. .+. ..+.-+-..+. .-++ .++-...-+.++..-...|++...+.++.
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~-----~~p-~~i~~lL~~v~~~~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n~~ 280 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLE-----FKP-LLLNDLLMVLSPRLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHNNK 280 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHH-----HCG-GGHHHHHHHHGGGCCH---HHHHHHHHHTTCTTTTHHHHHHHHTTCCH
T ss_pred HHHHHHccCChHHHHHHHHHHHH-----cCH-HHHHHHHHHhccCCCH---HHHHHHHHhcCCcHHHHHHHHHHHHcChH
Confidence 2233333333332222221 011 11111111111 1111 22333445667777788888887777777
Q ss_pred HHHHHHHHHHhh
Q 009801 457 VAQSNAAWILDK 468 (525)
Q Consensus 457 ~a~~~la~~~~~ 468 (525)
.....|+.+|-.
T Consensus 281 ~vn~al~~lyie 292 (336)
T d1b89a_ 281 SVNESLNNLFIT 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 777788888876
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