Citrus Sinensis ID: 009804

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
MDSVALSSPSPSPSSLKSRFLQKPSQNSKQLSSSVSFSSSSSSSSSSCSDFRSPTKAISMAAASNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKEEELLTQIVNEDKKEEELPTKIPDISTEDNLVKKEIAA
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEEEEEEccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccEEEccHHcHHHHHHccccEEccccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHcccccccccccEEEEcccccHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEcHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHc
cccHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEccccccEEcccHHHHHHcccccccccccccccccEEEEEEEEcccccccHHEEEcccccccccHcccccccEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccEEEccHHHcccHHccccEEEcccccccHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHcccccEEEccccccccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHcccccEEEEEEEcccEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccEEEcccccccccccHHHHHHHcc
mdsvalsspspspsslksrflqkpsqnskqlsssvsfsssssssssscsdfrsptKAISMAAAsnngnsqrkivtgpagyvledvphlsdyipdlptypnplqdnpaysvVKQYFVhvddtvpqkvvvhkdsprgthfrragprqkvyfesDEVYACIVTcgglcpglnTVIREIVYSLYYMYGVKRVlgidggyrgfyakntialtpkgvndihkrggtvlgtsrgghdtskIVDSIqdrginqvyiiggdgtqkgASVIYEEVRRRGLKVVVAGipktidndipvpLLTWFIAMYATLASrdvdcclipespfyleghggLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSAtqqdasgnKLLQDVGLWLSQKIKDHFAKekkmpinlkyidptymiravpsnasdnVYCTLLAQSCVhgamagytgytsglvngrqtyipFYRIIEKQHHVVITDRMWARLLsstnqpsfmnhkdviedKKEEELLTQIVNedkkeeelptkipdistednlvKKEIAA
mdsvalsspspspsslksrflqkpsqnskqlsssvsfsssssssssscsDFRSPTKAISMAaasnngnsqRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPqkvvvhkdsprgthfrragprqkvyfESDEVYACIVTCgglcpglnTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTialtpkgvndiHKRGgtvlgtsrgghdtSKIVDSIQDRGINQVyiiggdgtqkGASVIYEEVRRRGLKVvvagipktidndipvpLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHfakekkmpinlkyidpTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSstnqpsfmnhkdvieDKKEEELLTQivnedkkeeelptkipdistednlvkkeiaa
MDSVALsspspspssLKSRFLQKPSQNSKQLsssvsfsssssssssscsDFRSPTKAISMAAASNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKEEELLTQIVNEDKKEEELPTKIPDISTEDNLVKKEIAA
************************************************************************IVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKD****THFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAE*************KLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLS********************************************************
**************************************************************************TGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDL******************LQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSF*************************************************
******************************************************TKAISMAAASNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKEEELLTQIVNEDKKEEELPTKIPDISTEDNLVKKEIAA
****************************************************************NNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKEEELLTQIV*EDKKE*ELPTK*****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDSVALSSPSPSPSSLKSRFLQKPSQNSKQLSSSVSFSSSSSSSSSSCSDFRSPTKAISMAAASNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKEEELLTQIVNEDKKEEELPTKIPDISTEDNLVKKEIAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query525 2.2.26 [Sep-21-2011]
Q94AA4489 6-phosphofructokinase 3 O yes no 0.8 0.858 0.773 0.0
Q9C5J7485 6-phosphofructokinase 7 O no no 0.790 0.855 0.769 0.0
Q9M0F9473 6-phosphofructokinase 1 O no no 0.796 0.883 0.740 0.0
Q9M076462 6-phosphofructokinase 6 O no no 0.786 0.893 0.737 0.0
Q9FKG3530 6-phosphofructokinase 4, no no 0.798 0.790 0.647 1e-175
Q9FIK0444 6-phosphofructokinase 2 O no no 0.714 0.844 0.471 1e-107
Q8VYN6537 6-phosphofructokinase 5, no no 0.737 0.720 0.415 2e-90
Q59126341 Pyrophosphate--fructose 6 N/A no 0.413 0.636 0.309 1e-20
P65690343 6-phosphofructokinase OS= yes no 0.521 0.798 0.279 3e-18
P65691343 6-phosphofructokinase OS= yes no 0.521 0.798 0.279 3e-18
>sp|Q94AA4|K6PF3_ARATH 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1 Back     alignment and function desciption
 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/459 (77%), Positives = 388/459 (84%), Gaps = 39/459 (8%)

Query: 68  NSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVV 127
           +S+ KI+ G  GYVLEDVPHLSDY+P LPTYPNPLQDNPAYSVVKQYFV  DD+VPQK+V
Sbjct: 6   SSKPKIINGSCGYVLEDVPHLSDYLPGLPTYPNPLQDNPAYSVVKQYFVDADDSVPQKIV 65

Query: 128 VHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKR 187
           VHKD PRG HFRRAGPRQKVYFESDEV+ACIVTCGGLCPGLNTVIREIV SL YMYGVKR
Sbjct: 66  VHKDGPRGIHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREIVSSLSYMYGVKR 125

Query: 188 VLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVY 247
           +LGIDGGYRGFYAKNT++L  K VNDIHKRGGT+LGTSRGGHDT+KIVDSIQDRGINQVY
Sbjct: 126 ILGIDGGYRGFYAKNTVSLDSKVVNDIHKRGGTILGTSRGGHDTTKIVDSIQDRGINQVY 185

Query: 248 IIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV-------------------- 287
           IIGGDGTQ+GASVI+EE+RRRGLKV V GIPKTIDNDIPV                    
Sbjct: 186 IIGGDGTQRGASVIFEEIRRRGLKVAVIGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245

Query: 288 ---------------PLL---TWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIET 329
                           L+   + FIAMYATLASRDVDCCLIPESPFYLEG GGLFEYIE 
Sbjct: 246 AHVEAESIENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGEGGLFEYIEK 305

Query: 330 RLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKM 389
           RLKE+GHMV+VIAEGAGQDL+++S+ S T +DASGNKLL+DVGLWLSQ IKDHF  +KKM
Sbjct: 306 RLKESGHMVLVIAEGAGQDLMSKSMESMTLKDASGNKLLKDVGLWLSQSIKDHF-NQKKM 364

Query: 390 PINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYR 449
            +NLKYIDPTYMIRAVPSNASDNVYCTLLAQS VHGAMAGYTGY SGLVNGRQTYIPFYR
Sbjct: 365 VMNLKYIDPTYMIRAVPSNASDNVYCTLLAQSAVHGAMAGYTGYISGLVNGRQTYIPFYR 424

Query: 450 IIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKE 488
           I EKQ+HVVITDRMWARLLSSTNQPSF+  KDV ++K++
Sbjct: 425 ITEKQNHVVITDRMWARLLSSTNQPSFLGPKDVFDNKEK 463

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9C5J7|K6PF7_ARATH 6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0F9|K6PF1_ARATH 6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M076|K6PF6_ARATH 6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKG3|K6PF4_ARATH 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1 Back     alignment and function description
>sp|Q9FIK0|K6PF2_ARATH 6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYN6|K6PF5_ARATH 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1 Back     alignment and function description
>sp|Q59126|PFP_AMYME Pyrophosphate--fructose 6-phosphate 1-phosphotransferase OS=Amycolatopsis methanolica GN=pfp PE=1 SV=2 Back     alignment and function description
>sp|P65690|K6PF_MYCTU 6-phosphofructokinase OS=Mycobacterium tuberculosis GN=pfkA PE=3 SV=1 Back     alignment and function description
>sp|P65691|K6PF_MYCBO 6-phosphofructokinase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=pfkA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
224091357498 predicted protein [Populus trichocarpa] 0.841 0.887 0.765 0.0
255546259 632 phosphofructokinase, putative [Ricinus c 0.971 0.806 0.7 0.0
225445037539 PREDICTED: 6-phosphofructokinase 3-like 0.942 0.918 0.698 0.0
224122506492 predicted protein [Populus trichocarpa] 0.819 0.873 0.769 0.0
356515641507 PREDICTED: 6-phosphofructokinase 3-like 0.847 0.877 0.751 0.0
357500949505 6-phosphofructokinase [Medicago truncatu 0.836 0.869 0.762 0.0
297738727491 unnamed protein product [Vitis vinifera] 0.843 0.902 0.755 0.0
449435798492 PREDICTED: 6-phosphofructokinase 7-like 0.860 0.918 0.743 0.0
356520834536 PREDICTED: 6-phosphofructokinase 3-like 0.811 0.794 0.767 0.0
356507939509 PREDICTED: 6-phosphofructokinase 3-like 0.874 0.901 0.723 0.0
>gi|224091357|ref|XP_002309230.1| predicted protein [Populus trichocarpa] gi|222855206|gb|EEE92753.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/486 (76%), Positives = 409/486 (84%), Gaps = 44/486 (9%)

Query: 64  SNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVP 123
           ++N  S+ KI+TG  GYVLEDVPH +DYIPDL TY NPLQDNPA+ VVKQYFVHVDD+VP
Sbjct: 2   ASNDVSKPKIITGDFGYVLEDVPHFTDYIPDLSTYSNPLQDNPAFCVVKQYFVHVDDSVP 61

Query: 124 QKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMY 183
           QK+VVHKDSPRG HFRRAGPRQKVYF+SDEV+ACIVTCGGLCPGLNTVIREIVYSLY+MY
Sbjct: 62  QKIVVHKDSPRGIHFRRAGPRQKVYFDSDEVHACIVTCGGLCPGLNTVIREIVYSLYHMY 121

Query: 184 GVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGI 243
           GV  VLGIDGGYRGFYA+NTIALTPK VNDIHKRGGT+LGTSRGGHDTSKIVDSIQDRGI
Sbjct: 122 GVTTVLGIDGGYRGFYARNTIALTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGI 181

Query: 244 NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTW----------- 292
           NQVYIIGGDGTQKGASVI+EE+RRRGLKVVVAGIPKTIDNDIPV   ++           
Sbjct: 182 NQVYIIGGDGTQKGASVIFEEIRRRGLKVVVAGIPKTIDNDIPVIDKSFGFDTAVEEAQR 241

Query: 293 ---------------------------FIAMYATLASRDVDCCLIPESPFYLEGHGGLFE 325
                                      FIAMYATLASRDVDCCLIPESPFYL+G GGLFE
Sbjct: 242 AINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLDGKGGLFE 301

Query: 326 YIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAK 385
           YIE +LKENGHMVIVIAEGAGQ+LL+ES++S  QQDASGNKLLQDVGLW+SQ IKD+F++
Sbjct: 302 YIEKQLKENGHMVIVIAEGAGQELLSESMQSRNQQDASGNKLLQDVGLWISQGIKDYFSR 361

Query: 386 EKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYI 445
           +K M INLKYIDPTYMIRAVPSNASDNVY TLLAQS VHGAMAGYTG+TSGLVNGRQTYI
Sbjct: 362 QKTMAINLKYIDPTYMIRAVPSNASDNVYSTLLAQSAVHGAMAGYTGFTSGLVNGRQTYI 421

Query: 446 PFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKEEELLTQIVNEDKKEEEL 505
           PFYRIIEKQ+ VVITDRMWARLLSSTNQPSFM+ KDVIEDK      T+ ++ +KKEE+ 
Sbjct: 422 PFYRIIEKQNKVVITDRMWARLLSSTNQPSFMSDKDVIEDK------TECISGEKKEEDP 475

Query: 506 PTKIPD 511
            T+  D
Sbjct: 476 ATQFLD 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546259|ref|XP_002514189.1| phosphofructokinase, putative [Ricinus communis] gi|223546645|gb|EEF48143.1| phosphofructokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225445037|ref|XP_002283274.1| PREDICTED: 6-phosphofructokinase 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224122506|ref|XP_002330498.1| predicted protein [Populus trichocarpa] gi|222872432|gb|EEF09563.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515641|ref|XP_003526507.1| PREDICTED: 6-phosphofructokinase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357500949|ref|XP_003620763.1| 6-phosphofructokinase [Medicago truncatula] gi|355495778|gb|AES76981.1| 6-phosphofructokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297738727|emb|CBI27972.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435798|ref|XP_004135681.1| PREDICTED: 6-phosphofructokinase 7-like [Cucumis sativus] gi|449489822|ref|XP_004158426.1| PREDICTED: 6-phosphofructokinase 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356520834|ref|XP_003529065.1| PREDICTED: 6-phosphofructokinase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356507939|ref|XP_003522720.1| PREDICTED: 6-phosphofructokinase 3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
TAIR|locus:2165046485 PFK7 "phosphofructokinase 7" [ 0.426 0.461 0.839 1.4e-103
TAIR|locus:2136849489 PFK3 "phosphofructokinase 3" [ 0.419 0.449 0.859 2.3e-103
TAIR|locus:2118249473 PFK1 "phosphofructokinase 1" [ 0.428 0.475 0.817 1.9e-99
TAIR|locus:2134108462 PFK6 "phosphofructokinase 6" [ 0.428 0.487 0.808 1.7e-98
TAIR|locus:2041208537 PFK5 "phosphofructokinase 5" [ 0.342 0.335 0.486 2.6e-89
TAIR|locus:2151571530 PFK4 "phosphofructokinase 4" [ 0.398 0.394 0.741 3.9e-83
TAIR|locus:2160897444 PFK2 "phosphofructokinase 2" [ 0.518 0.612 0.418 1.7e-52
TIGR_CMR|CHY_1349361 CHY_1349 "phosphofructokinase" 0.272 0.396 0.339 2.4e-20
UNIPROTKB|P65690343 pfkA "6-phosphofructokinase" [ 0.270 0.413 0.374 9.6e-20
TIGR_CMR|CHY_1143321 CHY_1143 "6-phosphofructokinas 0.230 0.376 0.390 1.3e-18
TAIR|locus:2165046 PFK7 "phosphofructokinase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 188/224 (83%), Positives = 206/224 (91%)

Query:    64 SNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVP 123
             S+  +++ KIV GP GY+L+DVPHL DY+PDLPTYPNPLQDNPAYSVVKQYFVH DD+VP
Sbjct:     2 SSPRSNKPKIVNGPGGYILQDVPHLIDYLPDLPTYPNPLQDNPAYSVVKQYFVHADDSVP 61

Query:   124 QKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMY 183
             +KVVVHKD PRG HFRRAGPRQKVYFESDEV+ACIVTCGGLCPGLNTVIRE+V SL YMY
Sbjct:    62 EKVVVHKDGPRGVHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREVVSSLSYMY 121

Query:   184 GVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGI 243
             GVKR+LGIDGGYRGFYAKNTI L  K VNDIHKRGGT++GTSRGGHDT+KIVDSIQDRGI
Sbjct:   122 GVKRILGIDGGYRGFYAKNTIPLNSKVVNDIHKRGGTIIGTSRGGHDTNKIVDSIQDRGI 181

Query:   244 NQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV 287
             NQVYIIGGDGTQ+GASVI+EE+RRR LKV V GIPKTIDNDIPV
Sbjct:   182 NQVYIIGGDGTQRGASVIFEEIRRRRLKVAVVGIPKTIDNDIPV 225
GO:0003872 "6-phosphofructokinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005945 "6-phosphofructokinase complex" evidence=IEA;ISS
GO:0006096 "glycolysis" evidence=IEA;ISS;IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2136849 PFK3 "phosphofructokinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118249 PFK1 "phosphofructokinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134108 PFK6 "phosphofructokinase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041208 PFK5 "phosphofructokinase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151571 PFK4 "phosphofructokinase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160897 PFK2 "phosphofructokinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1349 CHY_1349 "phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P65690 pfkA "6-phosphofructokinase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1143 CHY_1143 "6-phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AA4K6PF3_ARATH2, ., 7, ., 1, ., 1, 10.77340.80.8588yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.110.991
3rd Layer2.7.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VI.935.1
6-phosphofructokinase (EC-2.7.1.11) (467 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VIII.2574.1
glucose-6-phosphate isomerase (EC-5.3.1.9) (569 aa)
     •• 0.933
gw1.II.3030.1
glucose-6-phosphate isomerase (EC-5.3.1.9) (542 aa)
     •• 0.919
gw1.XI.1644.1
hypothetical protein (551 aa)
  •  • •0.910
estExt_fgenesh4_pg.C_1660043
SubName- Full=Putative uncharacterized protein; (562 aa)
  •  • •0.910
fgenesh4_pg.C_LG_V001718
SubName- Full=Putative uncharacterized protein; (617 aa)
  •  • •0.910
gw1.127.161.1
hypothetical protein (339 aa)
     •• 0.910
eugene3.00020029
pyrophosphate--fructose-6-phosphate 1-phosphotransferase (617 aa)
  •  • •0.910
estExt_Genewise1_v1.C_LG_XIV0740
transketolase (EC-2.2.1.1) (635 aa)
     •• 0.905
eugene3.00021349
SubName- Full=Putative uncharacterized protein; (745 aa)
     •• 0.904
fgenesh4_pm.C_LG_X000906
transketolase (EC-2.2.1.1) (656 aa)
     •• 0.903

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
PLN02564484 PLN02564, PLN02564, 6-phosphofructokinase 0.0
PRK06830443 PRK06830, PRK06830, diphosphate--fructose-6-phosph 1e-160
PTZ00286459 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Prov 1e-150
PLN02884411 PLN02884, PLN02884, 6-phosphofructokinase 1e-131
COG0205347 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate 5e-48
PRK03202320 PRK03202, PRK03202, 6-phosphofructokinase; Provisi 8e-34
TIGR02483324 TIGR02483, PFK_mixed, phosphofructokinase 3e-30
cd00363338 cd00363, PFK, Phosphofructokinase, a key regulator 5e-28
TIGR02482301 TIGR02482, PFKA_ATP, 6-phosphofructokinase 2e-21
cd00763317 cd00763, Bacterial_PFK, Phosphofructokinase, a key 3e-21
pfam00365279 pfam00365, PFK, Phosphofructokinase 9e-20
PRK14071360 PRK14071, PRK14071, 6-phosphofructokinase; Provisi 1e-18
PTZ00287 1419 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi 3e-11
TIGR02478746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 1e-10
PRK14072416 PRK14072, PRK14072, 6-phosphofructokinase; Provisi 3e-10
TIGR02477539 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosp 3e-09
cd00765 550 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a 2e-07
PTZ00468 1328 PTZ00468, PTZ00468, phosphofructokinase family pro 2e-07
cd00764762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 4e-07
PRK07085 555 PRK07085, PRK07085, diphosphate--fructose-6-phosph 4e-07
PRK06555403 PRK06555, PRK06555, pyrophosphate--fructose-6-phos 5e-07
TIGR02478 746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 6e-07
PRK06555403 PRK06555, PRK06555, pyrophosphate--fructose-6-phos 2e-06
cd00764 762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 4e-05
PLN03028 610 PLN03028, PLN03028, pyrophosphate--fructose-6-phos 1e-04
PLN02251568 PLN02251, PLN02251, pyrophosphate-dependent phosph 0.001
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase Back     alignment and domain information 
 Score =  915 bits (2367), Expect = 0.0
 Identities = 366/478 (76%), Positives = 397/478 (83%), Gaps = 38/478 (7%)

Query: 67  GNSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKV 126
           G+S+ KIVTG AGYVLEDVPHL+DY+PDLPTYPNPLQDNPAYSVVKQYFV+ DDTV QK+
Sbjct: 1   GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60

Query: 127 VVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVK 186
           VVHKDSPRGTHFRRAGPRQKVYFESDEV ACIVTCGGLCPGLNTVIREIV  L YMYGV 
Sbjct: 61  VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120

Query: 187 RVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQV 246
           R+LGIDGGYRGFY++NTI LTPK VNDIHKRGGT+LGTSRGGHDTSKIVDSIQDRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180

Query: 247 YIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIP-------------------- 286
           YIIGGDGTQKGASVIYEE+RRRGLKV VAGIPKTIDNDIP                    
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240

Query: 287 ---------------VPLL---TWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIE 328
                          V L+   + FIAMYATLASRDVDCCLIPESPFYLEG GGLFE+IE
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIE 300

Query: 329 TRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKK 388
            RLKENGHMVIV+AEGAGQDL+AES+ S+  QDASGNKLL DVGLWLSQKIKDHF K KK
Sbjct: 301 KRLKENGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKK 360

Query: 389 MPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFY 448
           MPINLKYIDPTYMIRA+PSNASDNVYCTLLA S VHGAMAGYTG+T G VNGR  YIPFY
Sbjct: 361 MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFY 420

Query: 449 RIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDKKEEELLTQIVNEDKKEEELP 506
           RI EKQ+ VVITDRMWARLLSSTNQPSF++ KDV+E K+E+E   ++ +      ++ 
Sbjct: 421 RITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKREDEEAEKLDDGPLSSIDVT 478

Length = 484
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase Back     alignment and domain information
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase Back     alignment and domain information
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 525
PLN02564484 6-phosphofructokinase 100.0
PRK06830443 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
PTZ00286459 6-phospho-1-fructokinase; Provisional 100.0
PLN02884411 6-phosphofructokinase 100.0
PRK14072416 6-phosphofructokinase; Provisional 100.0
PRK06555403 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
PRK14071360 6-phosphofructokinase; Provisional 100.0
TIGR02483324 PFK_mixed phosphofructokinase. Members of this fam 100.0
cd00363338 PFK Phosphofructokinase, a key regulatory enzyme i 100.0
cd00763317 Bacterial_PFK Phosphofructokinase, a key regulator 100.0
TIGR02477539 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp 100.0
cd00765550 Pyrophosphate_PFK Phosphofructokinase, a key regul 100.0
TIGR02482301 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin 100.0
PRK07085555 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
PRK03202320 6-phosphofructokinase; Provisional 100.0
PLN02251568 pyrophosphate-dependent phosphofructokinase 100.0
PLN03028610 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
COG0205347 PfkA 6-phosphofructokinase [Carbohydrate transport 100.0
TIGR02478 745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
cd00764 762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
TIGR02478745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
cd00764762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
PF00365282 PFK: Phosphofructokinase; InterPro: IPR000023 The 100.0
PTZ002871419 6-phosphofructokinase; Provisional 100.0
KOG2440666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
PTZ004681328 phosphofructokinase family protein; Provisional 100.0
KOG2440 666 consensus Pyrophosphate-dependent phosphofructo-1- 99.97
COG3199355 Predicted inorganic polyphosphate/ATP-NAD kinase [ 93.5
cd06281269 PBP1_LacI_like_5 Ligand-binding domain of uncharac 91.98
PRK04761246 ppnK inorganic polyphosphate/ATP-NAD kinase; Revie 91.7
PRK00561259 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 91.52
PRK04885265 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 89.84
PF01513285 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me 89.7
PRK14077287 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 87.85
PRK03501264 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 86.58
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 85.98
PRK14075256 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 85.93
PRK10014342 DNA-binding transcriptional repressor MalI; Provis 85.55
cd06301272 PBP1_rhizopine_binding_like Periplasmic binding pr 85.15
cd01542259 PBP1_TreR_like Ligand-binding domain of DNA transc 84.16
PF00532279 Peripla_BP_1: Periplasmic binding proteins and sug 84.05
cd01538288 PBP1_ABC_xylose_binding Periplasmic xylose-binding 83.53
cd01574264 PBP1_LacI Ligand-binding domain of DNA transcripti 83.1
cd06310273 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi 82.44
PLN02929301 NADH kinase 82.37
PRK02231272 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 82.11
PRK04539296 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 82.01
PRK01911292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 81.75
cd06302298 PBP1_LsrB_Quorum_Sensing Periplasmic binding domai 81.2
PRK02649305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 81.18
PRK03378292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 80.99
COG1609333 PurR Transcriptional regulators [Transcription] 80.78
TIGR01917431 gly_red_sel_B glycine reductase, selenoprotein B. 80.33
TIGR01918431 various_sel_PB selenoprotein B, glycine/betaine/sa 80.07
cd06298268 PBP1_CcpA_like Ligand-binding domain of the catabo 80.05
>PLN02564 6-phosphofructokinase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-112  Score=909.57  Aligned_cols=419  Identities=86%  Similarity=1.357  Sum_probs=398.6

Q ss_pred             CCCCceecCCCcccccCCCcccccCCCCCCCCCCCCCCCCCCccceeeeccCCccccchhcccCCCccccccccCCccce
Q 009804           68 NSQRKIVTGPAGYVLEDVPHLSDYIPDLPTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSPRGTHFRRAGPRQKV  147 (525)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~~l~~~~p~~p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~~~~~f~~aGpr~~~  147 (525)
                      .++.|+++|++||+||+||||+||+|++|+++||++.++.|+.+..+||+++++|+.++..+...++..+|++||||+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~agpr~~i   81 (484)
T PLN02564          2 SSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTHFRRAGPRQKV   81 (484)
T ss_pred             CCcCccccCCCceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCccceecCCcceE
Confidence            46789999999999999999999999999999999999999999999999999999999888666778999999999999


Q ss_pred             eccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCC
Q 009804          148 YFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRG  227 (525)
Q Consensus       148 ~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~  227 (525)
                      ||+|+++|||||||||+|||||+|||++|+.+...|++.+||||++||+||+++++++|+++.|++|+++|||+|||||+
T Consensus        82 ~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~  161 (484)
T PLN02564         82 YFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRG  161 (484)
T ss_pred             EEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCC
Confidence            99999999999999999999999999999999877888899999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc------------------
Q 009804          228 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL------------------  289 (525)
Q Consensus       228 ~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD------------------  289 (525)
                      ++++++++++|++++||+||+||||||+++|++|+++++++|++|+||||||||||||++||                  
T Consensus       162 ~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~  241 (484)
T PLN02564        162 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA  241 (484)
T ss_pred             cchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999                  


Q ss_pred             --------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCCCCcc
Q 009804          290 --------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDL  349 (525)
Q Consensus       290 --------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa~~~~  349 (525)
                                          +|||||++++||+++||+|||||+||+++++.+|+++|++|+++++|+|||||||+++.+
T Consensus       242 i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~  321 (484)
T PLN02564        242 AHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDL  321 (484)
T ss_pred             HHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccch
Confidence                                999999999999977999999999999999999999999999999999999999999988


Q ss_pred             hhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcC
Q 009804          350 LAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAG  429 (525)
Q Consensus       350 ~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG  429 (525)
                      +.+.+....++|+|||++|+|++.||+++|+++|+.+.++.+++||++|||+|||++|+++|++||++||+.|||++|+|
T Consensus       322 ~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG  401 (484)
T PLN02564        322 IAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAG  401 (484)
T ss_pred             hhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence            87654334569999999999999999999999995455667889999999999999999999999999999999999999


Q ss_pred             CCceEEEEECCeEEEechhHHhhhcCcCCcchHHHHHHHhccCCCCCcCcccccchH
Q 009804          430 YTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPSFMNHKDVIEDK  486 (525)
Q Consensus       430 ~tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~~l~~tgqp~f~~~~~~~~~~  486 (525)
                      +||+||+++|++++++||++++..+|+|++++++|+++|++||||+|+.+++....+
T Consensus       402 ~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~  458 (484)
T PLN02564        402 YTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAK  458 (484)
T ss_pred             CCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhh
Confidence            999999999999999999999999999999999999999999999999977654443

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PTZ00286 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>PLN02884 6-phosphofructokinase Back     alignment and domain information
>PRK14072 6-phosphofructokinase; Provisional Back     alignment and domain information
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>PRK14071 6-phosphofructokinase; Provisional Back     alignment and domain information
>TIGR02483 PFK_mixed phosphofructokinase Back     alignment and domain information
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02482 PFKA_ATP 6-phosphofructokinase Back     alignment and domain information
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PRK03202 6-phosphofructokinase; Provisional Back     alignment and domain information
>PLN02251 pyrophosphate-dependent phosphofructokinase Back     alignment and domain information
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes [] Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] Back     alignment and domain information
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed Back     alignment and domain information
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 Back     alignment and domain information
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional Back     alignment and domain information
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines Back     alignment and domain information
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PLN02929 NADH kinase Back     alignment and domain information
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs Back     alignment and domain information
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>COG1609 PurR Transcriptional regulators [Transcription] Back     alignment and domain information
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B Back     alignment and domain information
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family Back     alignment and domain information
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
2hig_A487 Crystal Structure Of Phosphofructokinase Apoenzyme 5e-57
1mto_A319 Crystal Structure Of A Phosphofructokinase Mutant F 1e-13
3pfk_A319 Phosphofructokinase. Structure And Control Length = 2e-12
6pfk_A319 Phosphofructokinase, Inhibited T-State Length = 319 2e-12
1pfk_A320 Crystal Structure Of The Complex Of Phosphofructoki 9e-12
4a3s_A319 Crystal Structure Of Pfk From Bacillus Subtilis Len 2e-10
1zxx_A319 The Crystal Structure Of Phosphofructokinase From L 3e-09
1kzh_A 555 Structure Of A Pyrophosphate-dependent Phosphofruct 4e-09
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. Length = 487 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (556), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/409 (34%), Positives = 212/409 (51%), Gaps = 53/409 (12%)
Query: 141 AGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYA 200
           A  R +++F   E    IVTCGG+CPGLN VIR I  +   +Y VKRV+G   GY G   
Sbjct: 85  AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 201 KNT---IALTPKGVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 257
           K +   I L    V +IH  GGT+LG+SRG  D  ++VD+++  G+N ++ +GGDGTQ+G
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204
Query: 258 ASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPLLTWFI------------AMYA------- 298
           A VI +E +RRG+ + V G+PKTIDND+     T+              A YA       
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264
Query: 299 -----TLASRD--------------VDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVI 339
                 L  RD               + CL+PE+P   +    +   +E R   +   VI
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVI 321
Query: 340 VIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHF-AKEKKMP-INLKYID 397
           ++AEG GQD      R +   DASGNK L D+G+ L++K+K    A + + P   +KYID
Sbjct: 322 IVAEGFGQDWG----RGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYID 377
Query: 398 PTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHV 457
           P+YMIRA P +A+D ++C  LA   VH AMAG TG    + +     +P       +  +
Sbjct: 378 PSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVL 437
Query: 458 VITDRMWARLLSST-NQPSFMNHKDVIEDKKEEELLTQIVNEDKKEEEL 505
            +  ++W ++   T +  S +     +E ++E E + +  N D+  EEL
Sbjct: 438 DLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINR--NRDRLHEEL 484
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From Bacillus Stearothermophilus Bound With Fructose-6-Phosphate Length = 319 Back     alignment and structure
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control Length = 319 Back     alignment and structure
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State Length = 319 Back     alignment and structure
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase From Escherichia Coli With Its Reaction Products Length = 320 Back     alignment and structure
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis Length = 319 Back     alignment and structure
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From Lactobacillus Delbrueckii Length = 319 Back     alignment and structure
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase From The Lyme Disease Spirochete Borrelia Burgdorferi Length = 555 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 1e-169
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 2e-77
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 1e-39
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 2e-39
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 1e-38
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 8e-35
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 5e-32
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 6e-28
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 1e-31
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 4e-25
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 1e-30
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 1e-26
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 2e-30
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 9e-27
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 4e-30
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 8e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Length = 487 Back     alignment and structure
 Score =  487 bits (1255), Expect = e-169
 Identities = 154/499 (30%), Positives = 232/499 (46%), Gaps = 68/499 (13%)

Query: 60  MAAASNNGNSQRKIVTGPAGYVLEDVPHLSDYIPDLP--TYPNPLQDNPAYSVVKQYFVH 117
           MA  S +  + + +       +L  V      +  LP   YPNP +   +       F  
Sbjct: 1   MAVESRSRVTSKLVKAH--RAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRD 54

Query: 118 VDDTVPQKVVV-------HKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNT 170
             D +             +  S        A  R +++F   E    IVTCGG+CPGLN 
Sbjct: 55  KTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLND 114

Query: 171 VIREIVYSLYYMYGVKRVLGIDGGYRGFY---AKNTIALTPKGVNDIHKRGGTVLGTSRG 227
           VIR I  +   +Y VKRV+G   GY G     ++  I L    V +IH  GGT+LG+SRG
Sbjct: 115 VIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRG 174

Query: 228 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPV 287
             D  ++VD+++  G+N ++ +GGDGTQ+GA VI +E +RRG+ + V G+PKTIDND+  
Sbjct: 175 PQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSF 234

Query: 288 PLLTW--------------------------------------FIAMYATLASRDVDCCL 309
              T+                                      FIA  A +AS   + CL
Sbjct: 235 SHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICL 294

Query: 310 IPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQ 369
           +PE+P   +    +   +E R   +   VI++AEG GQD    S       DASGNK L 
Sbjct: 295 VPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGRGS----GGYDASGNKKLI 347

Query: 370 DVGLWLSQKIKDHFAK--EKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAM 427
           D+G+ L++K+K        +     +KYIDP+YMIRA P +A+D ++C  LA   VH AM
Sbjct: 348 DIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAM 407

Query: 428 AGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSST-NQPSFMNHKDVIEDK 486
           AG TG    + +     +P       +  + +  ++W ++   T +  S +     +E +
Sbjct: 408 AGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIR 467

Query: 487 KEEELLTQIVNEDKKEEEL 505
           +E E +    N D+  EEL
Sbjct: 468 RELEAIN--RNRDRLHEEL 484
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Length = 555 Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Length = 319 Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320 Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319 Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Length = 419 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 100.0
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 100.0
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 100.0
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 100.0
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 100.0
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 100.0
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 100.0
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 100.0
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 100.0
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 100.0
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
2an1_A292 Putative kinase; structural genomics, PSI, protein 92.13
3l49_A291 ABC sugar (ribose) transporter, periplasmic substr 91.28
2i2c_A272 Probable inorganic polyphosphate/ATP-NAD kinase 1; 91.12
3tb6_A298 Arabinose metabolism transcriptional repressor; tr 90.46
3m9w_A313 D-xylose-binding periplasmic protein; xylose bindi 88.7
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 87.46
3rot_A297 ABC sugar transporter, periplasmic sugar binding; 87.13
3k4h_A292 Putative transcriptional regulator; structural gen 86.76
3egc_A291 Putative ribose operon repressor; structural genom 86.55
3o74_A272 Fructose transport system repressor FRUR; dual tra 86.13
3gv0_A288 Transcriptional regulator, LACI family; transcript 86.12
3jy6_A276 Transcriptional regulator, LACI family; NYSGXRC, P 85.45
1z0s_A278 Probable inorganic polyphosphate/ATP-NAD kinase; A 84.31
3uug_A330 Multiple sugar-binding periplasmic receptor CHVE; 83.58
2qv7_A337 Diacylglycerol kinase DGKB; alpha-beta domain 1, b 82.07
2bon_A332 Lipid kinase; DAG kinase, transferase; 1.90A {Esch 81.07
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-91  Score=749.35  Aligned_cols=388  Identities=36%  Similarity=0.599  Sum_probs=353.8

Q ss_pred             CCCcccccCCCcccccCCCC--CCCCCCCCCCCCCCccceeeeccCCccccchhcccCCC-------ccccccccCCccc
Q 009804           76 GPAGYVLEDVPHLSDYIPDL--PTYPNPLQDNPAYSVVKQYFVHVDDTVPQKVVVHKDSP-------RGTHFRRAGPRQK  146 (525)
Q Consensus        76 ~~~~~~~~~v~~l~~~~p~~--p~~~spl~~~~~~~~~~~~fv~~~~~V~~~~~~~~~~~-------~~~~f~~aGpr~~  146 (525)
                      ...-+.|++|+.+.-.+|.|  |++||||..++.    ..+||+++|+|+.++....+..       +..+|++||||++
T Consensus        15 ~~~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~   90 (487)
T 2hig_A           15 KAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSR   90 (487)
T ss_dssp             ECTTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSE
T ss_pred             ccccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcce
Confidence            34568899999998888877  889999976554    6889999999999877643311       2347999999999


Q ss_pred             eeccCCCeEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhcc---CCeEeCChhhhhcccccCccccc
Q 009804          147 VYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYA---KNTIALTPKGVNDIHKRGGTVLG  223 (525)
Q Consensus       147 ~~f~~~~~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~---~~~i~Lt~~~v~~i~~~GGtiLG  223 (525)
                      +||+|+.+||||+||||+|||||++||++++.+...|++.+||||++||+||++   +++++|+|++|++|+++|||+||
T Consensus        91 i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLG  170 (487)
T 2hig_A           91 IHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILG  170 (487)
T ss_dssp             ESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSC
T ss_pred             eeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeec
Confidence            999999999999999999999999999999999876786799999999999964   69999999999999999999999


Q ss_pred             ccCCCCcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc--------------
Q 009804          224 TSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL--------------  289 (525)
Q Consensus       224 SsR~~~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD--------------  289 (525)
                      |+|++++.++++++|++++||+||+||||||+++|++|+++++++|++|+||||||||||||++||              
T Consensus       171 TsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~e  250 (487)
T 2hig_A          171 SSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQ  250 (487)
T ss_dssp             CCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             ------------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHcCCcEEEEEecCC
Q 009804          290 ------------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKENGHMVIVIAEGA  345 (525)
Q Consensus       290 ------------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~~g~~VIVVAEGa  345 (525)
                                              +|||||++||||+++||+|||||+||+++   +++++|++|+++++|+|||||||+
T Consensus       251 aId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGa  327 (487)
T 2hig_A          251 AIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGF  327 (487)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTT
T ss_pred             HHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCC
Confidence                                    99999999999995599999999999998   899999999998999999999999


Q ss_pred             CCcchhHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceee---EeeEeCCCccccCCCCCcchHHHHHHHHHHH
Q 009804          346 GQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPI---NLKYIDPTYMIRAVPSNASDNVYCTLLAQSC  422 (525)
Q Consensus       346 ~~~~~~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~---~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~A  422 (525)
                      ++.++..    ...+|++||++|++++.+|+++|+++++. .+..+   ++|+++|||+|||++||++||+||++||+.|
T Consensus       328 g~~~~~~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~-~g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~A  402 (487)
T 2hig_A          328 GQDWGRG----SGGYDASGNKKLIDIGVILTEKVKAFLKA-NKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLA  402 (487)
T ss_dssp             TGGGCCC------CBCTTSCBCCCCHHHHHHHHHHHHHHT-TTTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred             ccccccc----ccccccccCcchhHHHHHHHHHHHHHHhh-cCccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHH
Confidence            8765432    24589999999999999999999999852 12223   7799999999999999999999999999999


Q ss_pred             HHHHHcCCCceEEEEECCeEEEechhHHhhhcCcCCcchHHHHHHHhccCCCC
Q 009804          423 VHGAMAGYTGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLSSTNQPS  475 (525)
Q Consensus       423 V~~a~aG~tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~~l~~tgqp~  475 (525)
                      |+++++|++|+|||+++++++++||+++++..|+++++++||++++..++|+.
T Consensus       403 V~~l~~G~tg~mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~  455 (487)
T 2hig_A          403 VHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG  455 (487)
T ss_dssp             HHHHHTTEESEEEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred             HHHHHcCCCCEEEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999999999999999986
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Back     alignment and structure
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Back     alignment and structure
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis} Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp} Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} Back     alignment and structure
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A* Back     alignment and structure
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} Back     alignment and structure
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis} Back     alignment and structure
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Back     alignment and structure
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A* Back     alignment and structure
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Back     alignment and structure
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 525
d1pfka_320 c.89.1.1 (A:) ATP-dependent phosphofructokinase {E 3e-44
d4pfka_319 c.89.1.1 (A:) ATP-dependent phosphofructokinase {B 3e-42
d2f48a1550 c.89.1.1 (A:4-553) Pyrophosphate-dependent phospho 3e-40
d2f48a1550 c.89.1.1 (A:4-553) Pyrophosphate-dependent phospho 3e-15
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: ATP-dependent phosphofructokinase
species: Escherichia coli [TaxId: 562]

 Score =  156 bits (396), Expect = 3e-44
 Identities = 69/321 (21%), Positives = 118/321 (36%), Gaps = 23/321 (7%)

Query: 158 IVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKR 217
           ++T GG  PG+N  IR +V S     G++ V+GI  GY G Y    + L    V+D+  R
Sbjct: 7   VLTSGGDAPGMNAAIRGVVRSALT-EGLE-VMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64

Query: 218 GGTVLGTSRGGHDTSK-----IVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKV 272
           GGT LG++R      +      +++++ RGI+ + +IGGDG+  GA  + E         
Sbjct: 65  GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFP----- 119

Query: 273 VVAGIPKTIDNDIP---VPLLTWFIAMYATLASRDVDCCLIPESPFY---LEGHGGLFEY 326
              G+P TIDNDI      +  +        A   +              + G       
Sbjct: 120 -CIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLT 178

Query: 327 IETRLKENGHMVIVIAEGAGQDLLAESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKE 386
           +   +      V+V      ++ L   I+ A       + ++             HF  E
Sbjct: 179 LAAAIAGGCEFVVVPEVEFSREDLVNEIK-AGIAKGKKHAIVAITEHMCDVDELAHF-IE 236

Query: 387 KKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIP 446
           K+     +     ++ R       D +  + +    +   +AGY G   G+ N +  +  
Sbjct: 237 KETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHD 296

Query: 447 FYRIIEKQHHVVITDRMWARL 467
               IE           W   
Sbjct: 297 IIDAIENMKRPF--KGDWLDC 315
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319 Back     information, alignment and structure
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550 Back     information, alignment and structure
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
d4pfka_319 ATP-dependent phosphofructokinase {Bacillus stearo 100.0
d2f48a1550 Pyrophosphate-dependent phosphofructokinase {Lyme 100.0
d1pfka_320 ATP-dependent phosphofructokinase {Escherichia col 100.0
d1dbqa_282 Purine repressor (PurR), C-terminal domain {Escher 86.89
d1jyea_271 Lac-repressor (lacR) core (C-terminal domain) {Esc 86.3
d1z0sa1249 Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa 84.67
d1byka_255 Trehalose repressor, C-terminal domain {Escherichi 82.8
d8abpa_305 L-arabinose-binding protein {Escherichia coli [Tax 81.83
d1u0ta_302 Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob 81.52
d1qopa_267 Trp synthase alpha-subunit {Salmonella typhimurium 81.4
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: ATP-dependent phosphofructokinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.7e-68  Score=543.01  Aligned_cols=274  Identities=29%  Similarity=0.437  Sum_probs=250.3

Q ss_pred             eEEEEEcCCCChhhHHHHHHHHHHHHHHhcCCeEEEEEccchhhhccCCeEeCChhhhhcccccCcccccccCCC-----
Q 009804          154 VYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGG-----  228 (525)
Q Consensus       154 ~~iaIvtsGG~~PGlN~vIr~lv~~l~~~~g~~~V~Gi~~G~~GL~~~~~i~Lt~~~v~~i~~~GGtiLGSsR~~-----  228 (525)
                      +||||+||||+|||||++|+++++.+.. ++ .+|||+++||+||+++++++|+++++++|+++|||+|||+|++     
T Consensus         2 krIaIl~sGG~~pgiNa~i~~~v~~~~~-~~-~~v~g~~~G~~Gl~~~~~~~l~~~~~~~~~~~gGt~lgs~r~~~~~~~   79 (319)
T d4pfka_           2 KRIGVLTSGGDSPGMNAAIRSVVRKAIY-HG-VEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTE   79 (319)
T ss_dssp             CEEEEEEESSCCTTHHHHHHHHHHHHHH-TT-CEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCSCTTCCCCCTTSSSH
T ss_pred             CEEEEECcCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEccchHHhcCCCcccCCHHHHHHHHhcCccccccCCCCccccc
Confidence            5999999999999999999999999975 66 5999999999999999999999999999999999999999985     


Q ss_pred             CcHHHHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHcCCceeEEEeeccccCCCCCCc-------------------
Q 009804          229 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVVVAGIPKTIDNDIPVPL-------------------  289 (525)
Q Consensus       229 ~d~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~e~~~~~g~~i~VIgIPKTIDNDI~gtD-------------------  289 (525)
                      +++++++++|++++||+||+|||||||++|++|+++    +  ++||||||||||||++||                   
T Consensus        80 ~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~L~~~----~--~~vvgIPkTIDNDl~~td~t~Gf~TA~~~~~~~i~~l  153 (319)
T d4pfka_          80 EGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH----G--FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI  153 (319)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHT----T--CCEEEEEBCSSCCCTTCSSCBTHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHhccceEEEecCchHHHHHHHHHhc----c--CceeeeeeeccCCcCCccccccHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999874    4  679999999999999999                   


Q ss_pred             ------------------hhhHHHHHHhhhcCCccEEEcCCCCCCccchhhHHHHHHHHHHc-CCcEEEEEecCCCCcch
Q 009804          290 ------------------LTWFIAMYATLASRDVDCCLIPESPFYLEGHGGLFEYIETRLKE-NGHMVIVIAEGAGQDLL  350 (525)
Q Consensus       290 ------------------~sG~IAl~aaLAs~~ad~iLIPE~pf~leg~~~lle~I~~rl~~-~g~~VIVVAEGa~~~~~  350 (525)
                                        +|||||++++||+ ++|+|||||.||+++   ++++.|++++++ +++++||||||+..   
T Consensus       154 ~~~a~s~~rv~ivEvMGR~aG~lA~~~~la~-~a~~iliPE~~~~~~---~~~~~i~~~~~~~k~~~ivvvsEG~~~---  226 (319)
T d4pfka_         154 RDTATSHERTYVIEVMGRHAGDIALWSGLAG-GAETILIPEADYDMN---DVIARLKRGHERGKKHSIIIVAEGVGS---  226 (319)
T ss_dssp             HHHHHHTTCEEEEEECCSSCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEETTTCC---
T ss_pred             HhhcccCcceEEEEecCCCCcHHHHHhhccC-CCcEEEecCCCCCHH---HHHHHHHHHHhhcCCeeEEEEecccch---
Confidence                              9999999999999 799999999999988   899999998877 68999999999965   


Q ss_pred             hHHhhhhccccccCCccchhHHHHHHHHHHHHhCCCCceeeEeeEeCCCccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 009804          351 AESIRSATQQDASGNKLLQDVGLWLSQKIKDHFAKEKKMPINLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGY  430 (525)
Q Consensus       351 ~~~~~~~~~~DasGn~~L~dig~~La~~Ik~~~~~~~~~~~~lkyi~pgY~qRg~~psa~Dr~~a~~LG~~AV~~a~aG~  430 (525)
                                           +..+.+.+++..+.      .+|+.+|||+|||++|+++||.+|++||+.||+++++|+
T Consensus       227 ---------------------~~~~~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~  279 (319)
T d4pfka_         227 ---------------------GVDFGRQIQEATGF------ETRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGK  279 (319)
T ss_dssp             ---------------------HHHHHHHHHHHHCC------CEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ---------------------hhhhhhhhhhhcCc------eeEEeecCchhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence                                 23456777777663      357889999999999999999999999999999999999


Q ss_pred             CceEEEEECCeEEEechhHHhhhcCcCCcchHHHHHHHh
Q 009804          431 TGYTSGLVNGRQTYIPFYRIIEKQHHVVITDRMWARLLS  469 (525)
Q Consensus       431 tg~mVgi~n~~~~~vPL~~v~~~~k~v~~~~~~w~~~l~  469 (525)
                      +|+||+++|+++.++||+++++.+|.++++...+.+.|+
T Consensus       280 sg~mv~i~~~~~~~vpl~~v~~~~k~v~~~l~~~~~~l~  318 (319)
T d4pfka_         280 GGRCVGIQNNQLVDHDIAEALANKHTIDQRMYALSKELS  318 (319)
T ss_dssp             CSEEEEEETTEEEEEEHHHHTTSCCCCCHHHHHHHHHHT
T ss_pred             CCeEEEEECCEEEEEcHHHHHhcCCCCCHHHHHHHHhcC
Confidence            999999999999999999999999999876555566554
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure