Citrus Sinensis ID: 009807

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
MTEVLQSSPSHHFPSPSSSSSTPCAPNNYNSSSSSSDNSKGVLGSNLCIADVVQEREQEDQERELEQEQEQEQEEEEEEEEEEEERERGEGDQLSLLTLLVATFRKSLVGCSIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVESIPVSRLEPSDENGHQSSSDLYPVDTKDLAEEFDGEEKVFVSAEPSLESPPHATQPDSMTGTSFHSFLASIENIIPAGTLSLADSCPCDVISQVNSLTNGLQEDGFAGSSRGVQTNISKIKTGLSSSSSLKKGTRKLNEQSVASAAGPVEKSKGAGIVGLINSRTELFEAWR
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcc
ccEEEEccccccccccccccccccccccccccccccccccccccccccccHEEcccccccccccccccHHHHccccccccccccHHcccccccccHHHHHHHHHHHHcEEEcccccccHHHcccccccEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHcc
mtevlqsspshhfpspssssstpcapnnynssssssdnskgvlgsnlciADVVQEREQEDQERELEQEQEQEQEEEEEEEEEEEErergegdqLSLLTLLVATFRKSLVgcsigkelcsmeiglptnvRHVAHVTfdrfngflglpvefepevprrapsasanvfgvSTESMQlsfdsrgnsvPTILLLMQRHLYAQGGLQAEGIFrinaengqeEYVRDQlnrgmvpdniDVHCLAGLIKAWFRelptgvldslspeqVMQAQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAmvfapnmtqmsdpLTALMYAVQVMNFLKTLIIKTLKEREDSlvesipvsrlepsdenghqsssdlypvdtkdlaeefdgeekvfvsaepslespphatqpdsmtgtsFHSFLASIENiipagtlsladscpcdvisQVNSltnglqedgfagssrgvqtNISKiktglssssslkkgtrkLNEQSVasaagpvekskgagIVGLINSRTELFEAWR
mtevlqsspshhfpspssssstpCAPNNYNSSSSSSDNSKGVLGSNLCIADVVQEREQEDQERELEQeqeqeqeeeeeeeeeeeerergegdqlsLLTLLVATFRKSLVGCSIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLvesipvsrlepsdenghqsssdlypVDTKDLAEEFDGEEKVFVSAEPSLESPPHATQPDSMTGTSFHSFLASIENIIPAGTLSLADSCPCDVISQVNSLTNGLQEDGfagssrgvqtniskiktglssssslkkgTRKLNEQsvasaagpvekskgagivglinsrtelfeawr
MTEVLQsspshhfpspsssssTPCAPnnynssssssdnsKGVLGSNLCIADVVqereqedqereleqeqeqeqeeeeeeeeeeeerergegdqlSLLTLLVATFRKSLVGCSIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVESIPVSRLEPSDENGHQSSSDLYPVDTKDLAEEFDGEEKVFVSAEPSLESPPHATQPDSMTGTSFHSFLASIENIIPAGTLSLADSCPCDVISQVNSLTNGLQEDGFAGSSRGVQTNiskiktglssssslkkgtRKLNEQSVASAAGPVEKSKGAGIVGLINSRTELFEAWR
*********************************************NLCIADV*****************************************LSLLTLLVATFRKSLVGCSIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFE******************************NSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDS*************ECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLK***********************************************************************FHSFLASIENIIPAGTLSLADSCPCDVISQVNSLTN*********************************************************IVGLIN**********
**************************************************************************************************LLVATFRKSLVGCSIGKE*************HV***TF******************************V*TESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSL******************************************************************************************************************************************************************************
****************************************GVLGSNLCIADVVQ*************************************DQLSLLTLLVATFRKSLVGCSIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSP**********ECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVESIPVSR**************LYPVDTKDLAEEFDGEEKVF*******************TGTSFHSFLASIENIIPAGTLSLADSCPCDVISQVNSLTNGLQEDGFAGSSRGVQTNISKIKTG************************PVEKSKGAGIVGLINSRTELFEAWR
**********************************************LCIADVVQ*RE********EQ************************DQLSLLTLLVATFRKSLVGCSIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKERED**************************************************************************************************************************************************************AGIVGLINSRTELF*AWR
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MTEVLQSSPSHHFPSPSSSSSTPCAPNNYNSSSSSSDNSKGVLGSNLCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQLSLLTLLVATFRKSLVGCSIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVESIPVSRLEPSDENGHQSSSDLYPVDTKDLAEEFDGEEKVFVSAEPSLESPPHATQPDSMTGTSFHSFLASIENIIPAGTLSLADSCPCDVISQVNSLTNGLQEDGFAGSSRGVQTNISKIKTGLSSSSSLKKGTRKLNEQSVASAAGPVEKSKGAGIVGLINSRTELFEAWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query525 2.2.26 [Sep-21-2011]
Q54Y72338 Rho GTPase-activating pro yes no 0.335 0.520 0.357 7e-24
Q55GP8684 Rho GTPase-activating pro no no 0.299 0.229 0.322 4e-16
Q101641275 Probable Rho-type GTPase- yes no 0.318 0.130 0.274 4e-15
Q8N264 748 Rho GTPase-activating pro no no 0.340 0.239 0.295 3e-14
Q5U2Z7 748 Rho GTPase-activating pro no no 0.340 0.239 0.295 6e-14
Q8C4V1 747 Rho GTPase-activating pro yes no 0.394 0.277 0.278 7e-14
Q54QF4 909 Mental retardation GTPase no no 0.291 0.168 0.280 1e-12
Q2M1Z3 1444 Rho GTPase-activating pro no no 0.289 0.105 0.282 1e-11
Q54MI9970 Rho GTPase-activating pro no no 0.253 0.137 0.244 1e-11
Q54QB91312 Rho GTPase-activating pro no no 0.299 0.119 0.274 2e-11
>sp|Q54Y72|GACA_DICDI Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1 Back     alignment and function desciption
 Score =  112 bits (280), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 109/179 (60%), Gaps = 3/179 (1%)

Query: 164 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLN 223
           VFGV   +++   +  G  VP IL LM+R L   GGLQ EGIFR+  E  + + +++ +N
Sbjct: 143 VFGVDPNTLE-HVEDEGFRVPYILALMKRSLIDNGGLQQEGIFRLAGEQTEIKRLKEAMN 201

Query: 224 RGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLVRLLPPTEAAL 283
           R     + D++ +A LIK W+RELPT +L+S+  E++  +   +EC +  + LP  + +L
Sbjct: 202 RNDFTSSTDINTVASLIKIWYRELPTPILNSIPTEKIFYSTDIDECVQSAKNLPEPQKSL 261

Query: 284 LDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQM--SDPLTALMYAVQVMNFLKTLI 340
           LDW ++L+  V+     NKM A+N+A+V APN+  +  S+P+  L+ + + + FL  ++
Sbjct: 262 LDWLMHLLLMVSSFSDVNKMTAQNLAIVVAPNLYDVSSSNPMEGLVLSQKCVQFLHNVL 320
Rho GTPase-activating protein involved in the signal transduction pathway.
Dictyostelium discoideum (taxid: 44689)
>sp|Q55GP8|GACO_DICDI Rho GTPase-activating protein gacO OS=Dictyostelium discoideum GN=gacO PE=3 SV=1 Back     alignment and function description
>sp|Q10164|RGA2_SCHPO Probable Rho-type GTPase-activating protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rga2 PE=1 SV=1 Back     alignment and function description
>sp|Q8N264|RHG24_HUMAN Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2 Back     alignment and function description
>sp|Q5U2Z7|RHG24_RAT Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q54QF4|MGP4_DICDI Mental retardation GTPase activating protein homolog 4 OS=Dictyostelium discoideum GN=mgp4 PE=3 SV=1 Back     alignment and function description
>sp|Q2M1Z3|RHG31_HUMAN Rho GTPase-activating protein 31 OS=Homo sapiens GN=ARHGAP31 PE=1 SV=2 Back     alignment and function description
>sp|Q54MI9|GACK_DICDI Rho GTPase-activating protein gacK OS=Dictyostelium discoideum GN=gacK PE=3 SV=1 Back     alignment and function description
>sp|Q54QB9|GACG_DICDI Rho GTPase-activating protein gacG OS=Dictyostelium discoideum GN=gacG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
224088543515 predicted protein [Populus trichocarpa] 0.942 0.961 0.647 0.0
225440851533 PREDICTED: uncharacterized protein LOC10 0.813 0.801 0.709 1e-179
147806401533 hypothetical protein VITISV_014711 [Viti 0.813 0.801 0.709 1e-179
255578957405 gtpase activating protein, putative [Ric 0.771 1.0 0.751 1e-176
449462952505 PREDICTED: uncharacterized protein LOC10 0.834 0.867 0.684 1e-173
297740129389 unnamed protein product [Vitis vinifera] 0.735 0.992 0.721 1e-164
356505384493 PREDICTED: uncharacterized protein LOC10 0.817 0.870 0.685 1e-164
3695059493 rac GTPase activating protein 1 [Lotus j 0.815 0.868 0.662 1e-162
359479553 813 PREDICTED: uncharacterized protein LOC10 0.788 0.509 0.688 1e-161
356572576500 PREDICTED: uncharacterized protein LOC10 0.931 0.978 0.606 1e-161
>gi|224088543|ref|XP_002308467.1| predicted protein [Populus trichocarpa] gi|222854443|gb|EEE91990.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/545 (64%), Positives = 411/545 (75%), Gaps = 50/545 (9%)

Query: 1   MTEVLQSSPSHHFPSPSSSSSTPCAPNNYNSSSSSSDNSKGVLGSNLCIADVVQEREQED 60
           MTEVLQSSP HHFPSPSSS+STPC                 V  +++ I    Q+++   
Sbjct: 1   MTEVLQSSPPHHFPSPSSSTSTPCV----------------VSTNDVDIPHQHQQQQHHT 44

Query: 61  QERELEQEQEQEQEEEEEEEEEEEERERGEGDQLSLLTLLVATFRKSLVGCSI-----GK 115
             R           E  ++EE  +ERER EGDQ+S++ LL+A FR+S+VGCS+      K
Sbjct: 45  HNRP---------HEILDQEEGSKERER-EGDQVSIVELLLAAFRRSIVGCSVTASTGSK 94

Query: 116 ELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLS 175
            LC MEIG+PTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASA VFGVSTESMQLS
Sbjct: 95  GLCKMEIGVPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLS 154

Query: 176 FDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNIDVHC 235
           +DSRGNSVPTIL++MQRHLYAQGGLQAEGIFRI A N QEEYVRDQLN G++PD IDVHC
Sbjct: 155 YDSRGNSVPTILMMMQRHLYAQGGLQAEGIFRITAGNSQEEYVRDQLNGGVIPDGIDVHC 214

Query: 236 LAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLVRLLPPTEAALLDWAINLMADVA 295
           LAGLIKAWFRELPT VLDSLSPEQVMQ QSEEECARL  LLPPTEAALLDWA+NLMADVA
Sbjct: 215 LAGLIKAWFRELPTSVLDSLSPEQVMQCQSEEECARLAGLLPPTEAALLDWAVNLMADVA 274

Query: 296 QMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDSLVESI 355
           QMEH NKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLK LII+TL+ER++S+++S+
Sbjct: 275 QMEHLNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKNLIIRTLRERDESVIDSV 334

Query: 356 PVSRLEPSDENGHQSSSDLYPVDTKDLAEEFDGEEKVFVSAEPSLESPPHATQPDS---- 411
           PVSRLEP+D NG+QS+S     + +D  EE +  EK FV+ EP+ ESP   +Q DS    
Sbjct: 335 PVSRLEPTDGNGNQSASQPSCEEDEDATEENEW-EKAFVAEEPAFESPSQPSQDDSSTMD 393

Query: 412 -----------MTGTSFHSFLASIENIIPAGTLSLADSCPCDVISQVNSLTNGLQEDGFA 460
                      M G++   FL+SIEN IP G  SL D+CPC+V+SQVN+L N   E G  
Sbjct: 394 GSQPSQDDSSTMDGSA--GFLSSIEN-IPGGRWSLVDNCPCEVVSQVNALKNEHHEGGHT 450

Query: 461 GSSRGVQTNISKIKTGLSSSSSLKKGTRKLNEQSVASAAGPVEKSKGAGIVGLINSRTEL 520
             + GVQT   K KTG SS+S+LK+G++K+ EQ +  AAGPVEK +G GIVG IN +TEL
Sbjct: 451 YKTGGVQTRSCKSKTGQSSNSTLKRGSKKVKEQLIVRAAGPVEKGEGTGIVGHINPKTEL 510

Query: 521 FEAWR 525
           FEAWR
Sbjct: 511 FEAWR 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440851|ref|XP_002282200.1| PREDICTED: uncharacterized protein LOC100258031 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147806401|emb|CAN67621.1| hypothetical protein VITISV_014711 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578957|ref|XP_002530331.1| gtpase activating protein, putative [Ricinus communis] gi|223530135|gb|EEF32047.1| gtpase activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449462952|ref|XP_004149199.1| PREDICTED: uncharacterized protein LOC101203345 [Cucumis sativus] gi|449515573|ref|XP_004164823.1| PREDICTED: uncharacterized LOC101203345 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297740129|emb|CBI30311.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356505384|ref|XP_003521471.1| PREDICTED: uncharacterized protein LOC100783118 [Glycine max] Back     alignment and taxonomy information
>gi|3695059|gb|AAC62624.1| rac GTPase activating protein 1 [Lotus japonicus] Back     alignment and taxonomy information
>gi|359479553|ref|XP_002273863.2| PREDICTED: uncharacterized protein LOC100243219 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356572576|ref|XP_003554444.1| PREDICTED: uncharacterized protein LOC100798669 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
TAIR|locus:2176392466 AT5G22400 [Arabidopsis thalian 0.554 0.624 0.794 8.2e-123
TAIR|locus:2080762435 AT3G11490 [Arabidopsis thalian 0.565 0.682 0.718 1.4e-120
TAIR|locus:2062770455 ROPGAP3 "ROP guanosine triphos 0.537 0.619 0.674 4.1e-97
TAIR|locus:2199948331 AT1G08340 [Arabidopsis thalian 0.512 0.812 0.672 1e-93
TAIR|locus:2139330430 AT4G03100 [Arabidopsis thalian 0.617 0.753 0.578 7e-93
DICTYBASE|DDB_G0278381338 gacA "papD-like domain-contain 0.363 0.565 0.338 1.9e-28
FB|FBgn00388531330 RhoGAP93B "Rho GTPase activati 0.424 0.167 0.297 5.5e-14
DICTYBASE|DDB_G0267568684 gacO "RhoGAP domain-containing 0.299 0.229 0.322 9.7e-14
UNIPROTKB|F6UTR9513 ARHGAP8 "Uncharacterized prote 0.403 0.413 0.300 1.7e-13
UNIPROTKB|D6RCP5 622 ARHGAP24 "Rho GTPase-activatin 0.493 0.416 0.264 3e-13
TAIR|locus:2176392 AT5G22400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1173 (418.0 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
 Identities = 232/292 (79%), Positives = 252/292 (86%)

Query:    95 SLLTLLVATFRKSLVGC-SIGKELCSMEIGLPTNVRHVAHVTFDRFNGFLGLPVEFEPEV 153
             SLL LLVA FR+SL+ C S  +ELCSMEIG PTNVRHVAHVTFDRFNGFLGLPVEFEPEV
Sbjct:    89 SLLALLVAIFRRSLISCKSNRRELCSMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEV 148

Query:   154 PRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENG 213
             PRRAPSASA VFGVSTESMQLS+DSRGN VPTILLLMQ  LY+QGGLQAEGIFR+ AEN 
Sbjct:   149 PRRAPSASATVFGVSTESMQLSYDSRGNCVPTILLLMQNCLYSQGGLQAEGIFRLTAENS 208

Query:   214 QEEYVRDQLNRGMVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECARLV 273
             +EE VR+QLNRG +P+ IDVHCLAGLIKAWFRELPT VLDSLSPEQVMQ Q+EEE   LV
Sbjct:   209 EEEAVREQLNRGFIPERIDVHCLAGLIKAWFRELPTSVLDSLSPEQVMQCQTEEENVELV 268

Query:   274 RLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVM 333
             RLLPPTEAALLDWAINLMADV Q EH NKMN+RN+AMVFAPNMTQM DPLTALMYAVQVM
Sbjct:   269 RLLPPTEAALLDWAINLMADVVQYEHLNKMNSRNIAMVFAPNMTQMDDPLTALMYAVQVM 328

Query:   334 NFLKTLIIKTLKEREDSLVESIPVSRLEPSDENGHQSSSDLYPVDTKDLAEE 385
             NFLKTLI KTL+ER+DS+VE      LEPSDE+GHQS S     +T + +EE
Sbjct:   329 NFLKTLIEKTLRERQDSVVEQAHAFPLEPSDESGHQSPSQSLAFNTSEQSEE 380
GO:0005622 "intracellular" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0030675 "Rac GTPase activator activity" evidence=ISS
TAIR|locus:2080762 AT3G11490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062770 ROPGAP3 "ROP guanosine triphosphatase (GTPase)-activating protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199948 AT1G08340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139330 AT4G03100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278381 gacA "papD-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0038853 RhoGAP93B "Rho GTPase activating protein at 93B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267568 gacO "RhoGAP domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F6UTR9 ARHGAP8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D6RCP5 ARHGAP24 "Rho GTPase-activating protein 24" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021595001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (389 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
smart00324174 smart00324, RhoGAP, GTPase-activator protein for R 3e-34
pfam00620152 pfam00620, RhoGAP, RhoGAP domain 7e-32
cd00159169 cd00159, RhoGAP, RhoGAP: GTPase-activator protein 2e-30
cd04389187 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase- 4e-22
cd04400190 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas 3e-18
cd04404195 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA 2e-17
cd04402192 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP 2e-16
cd04386203 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP 2e-16
cd04385184 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase- 7e-16
cd04390199 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24 9e-16
cd04393189 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP 2e-15
cd04377186 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA 2e-14
cd04398192 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas 2e-14
cd04381182 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP 2e-13
cd04391216 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP 3e-13
cd04394202 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA 2e-12
cd04372194 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA 3e-12
cd04407186 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho 4e-12
cd04395196 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP 1e-11
cd04376206 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G 2e-10
cd04392208 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP 1e-09
pfam0078659 pfam00786, PBD, P21-Rho-binding domain 3e-09
cd04383188 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas 6e-09
cd04384195 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas 6e-09
cd04406186 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho 1e-07
cd04373185 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase- 5e-07
cd0013242 cd00132, CRIB, PAK (p21 activated kinase) Binding 1e-06
cd04382193 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA 4e-06
smart0028536 smart00285, PBD, P21-Rho-binding domain 9e-06
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 9e-06
cd04375220 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase- 1e-05
cd04403187 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_ 2e-05
cd04387196 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac 2e-05
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 3e-05
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 3e-05
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 4e-05
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 2e-04
cd04396225 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho 2e-04
cd04379207 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase- 3e-04
pfam04712481 pfam04712, Radial_spoke, Radial spokehead-like pro 5e-04
pfam03344715 pfam03344, Daxx, Daxx Family 8e-04
cd0109346 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) 9e-04
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.002
pfam09756189 pfam09756, DDRGK, DDRGK domain 0.002
pfam13904261 pfam13904, DUF4207, Domain of unknown function (DU 0.003
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.004
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases Back     alignment and domain information 
 Score =  126 bits (320), Expect = 3e-34
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 182 SVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNI----DVHCLA 237
            +P I+     +L  +G L  EGI+R++    + + +RD  + G  PD      DVH +A
Sbjct: 2   PIPIIVEKCIEYLEKRG-LDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVA 60

Query: 238 GLIKAWFRELPTGVL-DSLSPE--QVMQAQSEEE----CARLVRLLPPTEAALLDWAINL 290
           GL+K + RELP  ++   L  E  +  + + E E       L+ LLPP   A L + +  
Sbjct: 61  GLLKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAH 120

Query: 291 MADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTA-LMYAVQVMNFLKTLI 340
           +  VA+    NKM ARN+A+VF P + +  D   A L         ++ LI
Sbjct: 121 LNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDIRHQNTVIEFLI 171

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain Back     alignment and domain information
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain Back     alignment and domain information
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway Back     alignment and domain information
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|238526 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain Back     alignment and domain information
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 525
KOG4270577 consensus GTPase-activator protein [Signal transdu 100.0
cd04383188 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato 100.0
cd04390199 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas 100.0
cd04408200 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator 100.0
cd04372194 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase- 100.0
cd04407186 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas 100.0
cd04386203 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa 100.0
cd04389187 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator 100.0
cd04384195 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato 100.0
cd04403187 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G 100.0
cd04391216 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac 100.0
cd04375220 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator 100.0
cd04394202 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase- 100.0
cd04378203 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas 100.0
cd04409211 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato 100.0
cd04396225 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas 100.0
cd04406186 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas 100.0
cd04404195 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase- 100.0
cd04402192 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac 100.0
cd04387196 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr 100.0
cd04393189 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac 100.0
cd04381182 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa 100.0
cd04373185 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator 100.0
cd04379207 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator 100.0
cd04395196 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac 100.0
cd04397213 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato 100.0
cd04377186 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase- 100.0
cd04398192 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato 100.0
cd04400190 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato 100.0
cd04376206 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti 100.0
cd04385184 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator 100.0
cd04388200 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr 100.0
cd04382193 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase- 100.0
cd04392208 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac 100.0
cd04399212 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato 100.0
cd04380220 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato 100.0
cd04374203 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein 100.0
KOG2200674 consensus Tumour suppressor protein p122-RhoGAP/DL 100.0
smart00324174 RhoGAP GTPase-activator protein for Rho-like GTPas 99.97
KOG4407 1973 consensus Predicted Rho GTPase-activating protein 99.97
cd00159169 RhoGAP RhoGAP: GTPase-activator protein (GAP) for 99.97
KOG42691112 consensus Rac GTPase-activating protein BCR/ABR [S 99.96
KOG1450650 consensus Predicted Rho GTPase-activating protein 99.95
PF00620151 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members 99.95
KOG1451812 consensus Oligophrenin-1 and related Rho GTPase-ac 99.94
KOG2710412 consensus Rho GTPase-activating protein [Signal tr 99.94
KOG4406467 consensus CDC42 Rho GTPase-activating protein [Sig 99.93
KOG1453918 consensus Chimaerin and related Rho GTPase activat 99.92
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.89
KOG3564604 consensus GTPase-activating protein [General funct 99.89
KOG1452442 consensus Predicted Rho GTPase-activating protein 99.77
KOG4724 741 consensus Predicted Rho GTPase-activating protein 99.75
KOG42711100 consensus Rho-GTPase activating protein [Signal tr 99.69
cd04401198 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato 99.63
cd04405235 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas 99.51
KOG3565640 consensus Cdc42-interacting protein CIP4 [Cytoskel 99.21
KOG4370514 consensus Ral-GTPase effector RLIP76 [Signal trans 99.18
PF08101420 DUF1708: Domain of unknown function (DUF1708); Int 98.29
KOG4724741 consensus Predicted Rho GTPase-activating protein 97.68
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 96.6
KOG1453918 consensus Chimaerin and related Rho GTPase activat 96.49
KOG1449 670 consensus Predicted Rho GTPase-activating protein 92.09
KOG1449 670 consensus Predicted Rho GTPase-activating protein 89.45
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-43  Score=383.33  Aligned_cols=242  Identities=56%  Similarity=0.860  Sum_probs=226.6

Q ss_pred             ccccccccCCCcccccccceEeeeccc---ccCCCccCCCCCCCCCCCCCCCccccchhhhhhhhcCCCCCCCHHHHHHH
Q 009807          115 KELCSMEIGLPTNVRHVAHVTFDRFNG---FLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQ  191 (525)
Q Consensus       115 ~~~~~~~igwp~~i~~~a~it~~r~~~---~~gl~~~~~~~~p~~~~~~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i  191 (525)
                      .+.|.++++|++.+.+..+++|+++.+   |+|++.++.+..+++.+.+...+|||+++.++..++..+..||.|+..+.
T Consensus        94 ~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~  173 (577)
T KOG4270|consen   94 EEECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQ  173 (577)
T ss_pred             HHhhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccchhhhhcchHHhhhcccccCCCcchhhhHhhh
Confidence            578999999999999999999999999   99999999999999999999999999999999999888888999999999


Q ss_pred             H-HHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCCC--CChhhhhHHHHHHHHhCCCCCCCCCCHHHHHHhh----
Q 009807          192 R-HLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDN--IDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQ----  264 (525)
Q Consensus       192 ~-~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~~--~Dvh~vAslLK~fLReLPePLlp~~l~~~ll~~~----  264 (525)
                      . +||.++|++.|||||++|...+++.||++||.|..+..  +|||++|++||.||||||+||+++.+|.+|++..    
T Consensus       174 ~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~  253 (577)
T KOG4270|consen  174 SGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCEN  253 (577)
T ss_pred             hhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccC
Confidence            9 88899999999999999999999999999999988876  9999999999999999999999999999988653    


Q ss_pred             ---hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHHhhhccccCCCChhHHHHHHHHHHHHHHHHHH
Q 009807          265 ---SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLII  341 (525)
Q Consensus       265 ---~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAiVFaP~Llr~~d~~~~l~~~~~v~~~l~~LI~  341 (525)
                         +.+.++.++.+||+.|+.+|+|||.||+.|++++++|||+++||||||||||+|+.++.++++++.+++++++.+|+
T Consensus       254 e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~lie  333 (577)
T KOG4270|consen  254 EDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGLIE  333 (577)
T ss_pred             HHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHHHH
Confidence               22346778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccccCCC
Q 009807          342 KTLKEREDSLVESIP  356 (525)
Q Consensus       342 ~ll~e~~~~if~~~p  356 (525)
                      .+|.+++..+-..+.
T Consensus       334 ~~l~~~~~~~~g~~~  348 (577)
T KOG4270|consen  334 KTLEERDTSFPGELE  348 (577)
T ss_pred             HHHHhhhccCCcccc
Confidence            999998777654444

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins Back     alignment and domain information
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms] Back     alignment and domain information
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only] Back     alignment and domain information
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] Back     alignment and domain information
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation Back     alignment and domain information
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3564 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins Back     alignment and domain information
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins Back     alignment and domain information
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton] Back     alignment and domain information
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms] Back     alignment and domain information
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
1xa6_A466 Crystal Structure Of The Human Beta2-Chimaerin Leng 5e-09
3eap_A271 Crystal Structure Of The Rhogap Domain Of Arhgap11a 3e-08
3iug_A229 Crystal Structure Of The Rhogap Domain Of Rics Leng 2e-07
2osa_A202 The Rho-Gap Domain Of Human N-Chimaerin Length = 20 4e-07
3cxl_A463 Crystal Structure Of Human Chimerin 1 (Chn1) Length 4e-07
2ee5_A219 Solution Structure Of The N-Teruminus Extended Rhog 5e-07
1ow3_A242 Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With 6e-07
1grn_B203 Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX 7e-07
2ee4_A209 Solution Structure Of The Rhogap Domain From Human 8e-07
1am4_A199 Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S 9e-07
1tx4_A198 RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 1e-06
2ngr_B234 Transition State Complex For Gtp Hydrolysis By Cdc4 4e-06
3msx_B201 Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With 6e-05
3fk2_A246 Crystal Structure Of The Rhogap Domain Of Human Glu 6e-04
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 184 PTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPDNI------DVHCLA 237
           P ++ +  R + A+G L++EG++R++      E V+   +R     +I      D++ + 
Sbjct: 289 PMVVDICIREIEARG-LKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIIT 347
Query: 238 GLIKAWFRELPTGVLDSLSPEQVMQA-------QSEEECARLVRLLPPTEAALLDWAINL 290
           G +K +FR+LP  V+   +  + + A       +  E    ++ LLPP     L + +  
Sbjct: 348 GALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIH 407
Query: 291 MADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIKTLKEREDS 350
           +  V   E  N MNA N+ +VF P  T M  P  + +  +  M + K LI++ L E ED 
Sbjct: 408 LKKVTMNEKDNFMNAENLGIVFGP--TLMRPPEDSTLTTLHDMRYQK-LIVQILIENEDV 464
Query: 351 L 351
           L
Sbjct: 465 L 465
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271 Back     alignment and structure
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229 Back     alignment and structure
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202 Back     alignment and structure
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463 Back     alignment and structure
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219 Back     alignment and structure
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242 Back     alignment and structure
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203 Back     alignment and structure
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209 Back     alignment and structure
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199 Back     alignment and structure
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 Back     alignment and structure
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234 Back     alignment and structure
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201 Back     alignment and structure
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 100.0
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 100.0
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 100.0
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 100.0
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 100.0
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 100.0
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 100.0
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 100.0
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 100.0
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 100.0
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 100.0
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 100.0
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 100.0
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 100.0
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 100.0
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 100.0
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Back     alignment and structure
Probab=100.00  E-value=3.5e-39  Score=309.74  Aligned_cols=172  Identities=24%  Similarity=0.337  Sum_probs=150.4

Q ss_pred             CCCCccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCCCCC---CCChhhh
Q 009807          160 ASANVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGMVPD---NIDVHCL  236 (525)
Q Consensus       160 ~~~~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~~~~---~~Dvh~v  236 (525)
                      .+.++||++|+++... ......||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|...+   ..|+|++
T Consensus         4 ~~~~vFG~~L~~~~~~-~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~   81 (198)
T 1tx4_A            4 LPNQQFGVSLQHLQEK-NPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP   81 (198)
T ss_dssp             CTTCCTTSCHHHHHHH-STTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred             CCCCccCCcHHHHHhh-CCCCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence            4678999999998532 222358999999999999 6899999999999999999999999999987543   3589999


Q ss_pred             hHHHHHHHHhCCCCCCCCCCHHHHHHhh------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhHH
Q 009807          237 AGLIKAWFRELPTGVLDSLSPEQVMQAQ------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAM  310 (525)
Q Consensus       237 AslLK~fLReLPePLlp~~l~~~ll~~~------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLAi  310 (525)
                      |++||.|||+||+||+|.++|+.|+++.      +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+
T Consensus        82 a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~  161 (198)
T 1tx4_A           82 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV  161 (198)
T ss_dssp             HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHh
Confidence            9999999999999999999999999864      4567899999999999999999999999999999999999999999


Q ss_pred             hhhccccCCCChhHHHHHHHHHH
Q 009807          311 VFAPNMTQMSDPLTALMYAVQVM  333 (525)
Q Consensus       311 VFaP~Llr~~d~~~~l~~~~~v~  333 (525)
                      ||||+|++++++...+.......
T Consensus       162 vf~P~Ll~~~~~~~~~~~~~~~~  184 (198)
T 1tx4_A          162 VFGPNLLWAKDAAITLKAINPIN  184 (198)
T ss_dssp             HHHHHHCCCSSHHHHHHTHHHHH
T ss_pred             hhcccccCCCCccccHHHHHHHH
Confidence            99999999988655444333333
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Back     alignment and structure
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 525
d1tx4a_196 a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi 2e-30
d1xa6a1196 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d 4e-29
d1pbwa_184 a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu 1e-22
d1f7ca_191 a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI 7e-21
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 0.003
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 0.003
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-30
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 164 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLN 223
            FGVS + +Q   +     +P +L     +L     L  EGIFR +A       V+ + N
Sbjct: 6   QFGVSLQHLQ-EKNPEQEPIPIVLRETVAYLQ-AHALTTEGIFRRSANTQVVREVQQKYN 63

Query: 224 RG---MVPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQAQSEEECAR------LVR 274
            G          +H  A ++K + RELP  +L       V+   + +E  R      +++
Sbjct: 64  MGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 123

Query: 275 LLPPTEAALLDWAINLMADVAQMEHFNKMNARNVAMVFAPNMTQMSDPLTALMYAVQVMN 334
            LP     +L +    +  ++     NKM   N+A+VF PN+    D    L     +  
Sbjct: 124 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINT 183

Query: 335 FLKTLI 340
           F K L+
Sbjct: 184 FTKFLL 189
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
d1xa6a1196 Beta-chimaerin, C-terminal domain {Human (Homo sap 100.0
d1tx4a_196 p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96 100.0
d1f7ca_191 Graf {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
d1pbwa_184 p85 alpha subunit RhoGAP domain {Human (Homo sapie 100.0
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-38  Score=296.45  Aligned_cols=156  Identities=23%  Similarity=0.401  Sum_probs=140.5

Q ss_pred             CccccchhhhhhhhcCCCCCCCHHHHHHHHHHHHcCCCCcCCceecCCCcchHHHHHHHHhcCC-CC-----CCCChhhh
Q 009807          163 NVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEYVRDQLNRGM-VP-----DNIDVHCL  236 (525)
Q Consensus       163 ~vFGv~Le~l~~~~~~~~~~VP~iL~~~i~~L~e~~GL~~EGIFRvsGs~~~V~~Lr~~ld~g~-~~-----~~~Dvh~v  236 (525)
                      ++||++|+.+..   +.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||.+. ..     ...|+|++
T Consensus         1 kiFg~~L~~~~~---~~~~~iP~iv~~~i~~l-~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~v   76 (196)
T d1xa6a1           1 KVYCCDLTTLVK---AHNTQRPMVVDICIREI-EARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINII   76 (196)
T ss_dssp             CCTTSCHHHHHH---HHTCSSCHHHHHHHHHH-HHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHH
T ss_pred             CccCCCHHHHHH---hcCCCCChHHHHHHHHH-HHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHH
Confidence            489999999843   34678999999999999 7899999999999999999999999999852 21     24699999


Q ss_pred             hHHHHHHHHhCCCCCCCCCCHHHHHHhh-------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHhhhcccCCCChhhhH
Q 009807          237 AGLIKAWFRELPTGVLDSLSPEQVMQAQ-------SEEECARLVRLLPPTEAALLDWAINLMADVAQMEHFNKMNARNVA  309 (525)
Q Consensus       237 AslLK~fLReLPePLlp~~l~~~ll~~~-------~~e~l~~ll~~LP~~nr~lL~~Li~fL~~V~~~s~~NkMt~~NLA  309 (525)
                      |++||+|||+||+||+|.++|+.++.+.       +.+.++.++..||+.|+.+|.||+.||++|+.+++.|||++.|||
T Consensus        77 a~~lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA  156 (196)
T d1xa6a1          77 TGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLG  156 (196)
T ss_dssp             HHHHHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHH
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhh
Confidence            9999999999999999999999998863       345688899999999999999999999999999999999999999


Q ss_pred             HhhhccccCCCCh
Q 009807          310 MVFAPNMTQMSDP  322 (525)
Q Consensus       310 iVFaP~Llr~~d~  322 (525)
                      +||||+|+++++.
T Consensus       157 ~~f~P~l~~~~~~  169 (196)
T d1xa6a1         157 IVFGPTLMRPPED  169 (196)
T ss_dssp             HHHTTTSCCCCCS
T ss_pred             HHhccccccCCCc
Confidence            9999999998753
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure