Citrus Sinensis ID: 009812

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
MLTEHKPLMRALRRSHTSSSSSPSSSNSSSPSSSSWIHLRSVLLVVASSSSSSSPVYSDRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI
cccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHc
cccccHHHHHHHHHHccccccccccccccccccccHEEEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHccccccEcccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHccEcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcc
mltehkplmralrrshtssssspsssnssspsssswiHLRSVLLVVASsssssspvysdrgslkspwsrrrrkhallpkqwktfftpdgklsegGVKFLKKVrsggvdpsiraeVWPFLLGVydlksskeerDSVKAEKRKEYENLRKECRKIIHRYEKssklkettgkssnedsgdlsqvfdspgledeassrrsvssdggspvaedldhpvydqspecsgllegederdksvltcedasagdtestdsdssedlenipllsvegaearhenpkessslskadgnskfytdedfATWQRIIRLDAvransewtiyspsQAAVSEMKAQRSAQIvglkdydhlepsriYHAARLEDHEAFWCFAGFMKKarhnfrldevgIRRQLSIVSKIIKCKDNHLYRHLeqlqaedcFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSawgrmrlrapptddLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI
mltehkplmralrrshtssssspsssnssspssssWIHLRSVLLVVAssssssspvysdrgslkspwsrrrrkhallpkqwktfftpdgklsegGVKFLKKvrsggvdpsiraevwpFLLGvydlksskeerdsvkaekrkeyenlrKECRKIIhryekssklkettgkssnedsgdlsqVFDSPGledeassrrsvssdggspvaedldhpvydQSPECSGLLEGEDERDKSVLTCEdasagdtestdsdssedleNIPLLSvegaearhenpkessslskadgnsKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI
MLTEHKPLMRALRRSHTssssspsssnssspssssWIHLRsvllvvassssssspvysDRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEAssrrsvssdggsPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEdasagdtestdsdssedLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI
***********************************WIHLRSVLLVV****************************ALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDL*******************************************************************************************************************************************************************FYTDEDFATWQRIIRLDAVRANSEWTIYSP*************AQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLH***
*******************************************************************************QWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDSGDLS**************************************************************************************************************YTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGI***********APPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI
***********************************WIHLRSVLLVV*************************RKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKS*************KEYENLRKECRKIIHRYEKSS****************LSQVFD**********************AEDLDHPVYDQSPECSGLLEGEDERDKSVLTCE******************ENIPLLSVEG*****************DGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQ***********AQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI
****HKPL**************************SWIHLRSVLLVVASS************************HALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEK******************************************************************************************************************************NSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLTEHKPLMRALRRSHTSSSSSPSSSNSSSPSSSSWIHLRSVLLVVASSSSSSSPVYSDRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query524 2.2.26 [Sep-21-2011]
P09379730 GTPase-activating protein yes no 0.259 0.186 0.282 1e-17
Q6BU76757 GTPase-activating protein yes no 0.278 0.192 0.259 2e-15
Q9UUH7743 GTPase-activating protein yes no 0.240 0.169 0.280 4e-14
Q6FWI1745 GTPase-activating protein yes no 0.333 0.234 0.218 2e-13
O431471006 Small G protein signaling yes no 0.744 0.387 0.228 2e-13
Q80U121005 Small G protein signaling yes no 0.746 0.389 0.235 3e-13
Q8TC07691 TBC1 domain family member no no 0.253 0.192 0.261 6e-13
Q9CXF4671 TBC1 domain family member no no 0.272 0.213 0.245 2e-12
P48365746 GTPase-activating protein yes no 0.270 0.190 0.254 8e-12
Q3MII6 688 TBC1 domain family member no no 0.162 0.123 0.333 3e-09
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function desciption
 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 84/156 (53%), Gaps = 20/156 (12%)

Query: 355 EDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFV 414
           +D  AFW F+ FM++   N+  D+ G+R QL  +  +++     LY+HLE+ ++ + FF 
Sbjct: 532 DDTLAFWAFSAFMERMERNYLRDQSGMRNQLLCLDHLVQFMLPSLYKHLEKTESTNLFFF 591

Query: 415 YRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAA 474
           +RM++V F+REL ++  L LWEV+W D                      +   +L+   A
Sbjct: 592 FRMLLVWFKRELLWDDVLRLWEVLWTDYL--------------------SSQFVLFVCLA 631

Query: 475 CVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLL 510
            + + + ++I+  +  DEI++  N ++  +D+ +LL
Sbjct: 632 ILDKHKDVMIDHLAGFDEILKYMNELSMTIDLDELL 667
Most effectively accelerate the intrinsic GTPase activity of YPT7. It is also active, but to a lesser extent, on YPT31, YPT32 and YPT1. YPT6 and SEC4.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|O43147|SGSM2_HUMAN Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4 Back     alignment and function description
>sp|Q80U12|SGSM2_MOUSE Small G protein signaling modulator 2 OS=Mus musculus GN=Sgsm2 PE=2 SV=2 Back     alignment and function description
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
225426598554 PREDICTED: GTPase-activating protein gyp 0.988 0.935 0.710 0.0
359474146591 PREDICTED: GTPase-activating protein gyp 0.938 0.832 0.680 0.0
255555739554 conserved hypothetical protein [Ricinus 0.967 0.915 0.625 0.0
225455274549 PREDICTED: small G protein signaling mod 0.956 0.912 0.648 1e-180
225455272546 PREDICTED: small G protein signaling mod 0.956 0.917 0.648 1e-180
356516109550 PREDICTED: GTPase-activating protein gyp 0.914 0.870 0.637 1e-177
356509190555 PREDICTED: GTPase-activating protein gyp 0.917 0.866 0.616 1e-172
225455270539 PREDICTED: small G protein signaling mod 0.881 0.857 0.625 1e-170
255554359544 conserved hypothetical protein [Ricinus 0.860 0.829 0.618 1e-165
449456417549 PREDICTED: LOW QUALITY PROTEIN: GTPase-a 0.862 0.823 0.631 1e-165
>gi|225426598|ref|XP_002280223.1| PREDICTED: GTPase-activating protein gyp7-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/560 (71%), Positives = 456/560 (81%), Gaps = 42/560 (7%)

Query: 1   MLTEHKPLMRALRRSHTSSSSSPSSSNSSSPSSSS-WIHLRSVLLVVASSSSSSSPVYSD 59
           MLT+ KP MRALRRS TSS SS S+S+S S SSSS WIHLR+VLLVVASSS    PV +D
Sbjct: 1   MLTQQKPFMRALRRSITSSPSSSSNSSSPSSSSSSSWIHLRTVLLVVASSS----PVSTD 56

Query: 60  RGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFL 119
           RG+LKSPWSRRRRKHALL KQWK+ FTPDGK ++GGVKFLKKVRSGGVDPSIR EVWPFL
Sbjct: 57  RGTLKSPWSRRRRKHALLAKQWKSLFTPDGKFTDGGVKFLKKVRSGGVDPSIRVEVWPFL 116

Query: 120 LGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDSGDLS 179
           LGVYD+KSS+EERDS++A+KRKEYENLRK+CR+I+ + + S KL+ETTG  SN+DS + S
Sbjct: 117 LGVYDVKSSREERDSIRAQKRKEYENLRKQCRRILKQSDTSIKLRETTGSCSNQDSEEFS 176

Query: 180 QVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECS-GLLEGEDERDKSVLTCE 238
           QV DS G ED  S+R S S++GG+P  ED  HPV +  P+ S  LLEG+ E  KS LTCE
Sbjct: 177 QVLDSSGSEDVVSARLSHSTEGGTPEEEDSVHPVCNVGPQTSDSLLEGDGE--KSGLTCE 234

Query: 239 DASAGDTESTDSDSSEDLENIPLLSVEGAEARH--ENPKESSSLSKADGNSKFYTDEDFA 296
           DASA  ++S+DSDSS ++++IPL + EG E     ++ KE+SS S+ +  SK   +EDFA
Sbjct: 235 DASASYSDSSDSDSSGEIDSIPLFAAEGTEENDLGDHAKENSSPSETESGSKLRMNEDFA 294

Query: 297 TWQRIIRLDAVRANSEWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARL-- 354
           TWQRIIRLDAVRAN+EW IYSPSQAAVSE+KA+R A+ VGLKDYDHLEP RI+HAARL  
Sbjct: 295 TWQRIIRLDAVRANAEWIIYSPSQAAVSEIKARRFAESVGLKDYDHLEPCRIFHAARLVA 354

Query: 355 ------------------------------EDHEAFWCFAGFMKKARHNFRLDEVGIRRQ 384
                                         EDH+AFWCF G+MKKARHNFRLDEVGIRRQ
Sbjct: 355 ILEAYALYDSEIGYCQGMSDLLSPIISVMEEDHDAFWCFVGYMKKARHNFRLDEVGIRRQ 414

Query: 385 LSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAA 444
           LSIVSKIIKCKD+HLYRHLE+LQAEDCFFVYRMVVVLFRREL+FEQTLCLWEV+WADQAA
Sbjct: 415 LSIVSKIIKCKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAA 474

Query: 445 IRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHL 504
           +RAGIAKS WGR+RLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEI+RECNSMAGHL
Sbjct: 475 VRAGIAKSTWGRIRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIIRECNSMAGHL 534

Query: 505 DVWKLLDDAHDLVVTLHAKI 524
           DVWKLLDDAHDLVVTLH K+
Sbjct: 535 DVWKLLDDAHDLVVTLHDKV 554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474146|ref|XP_002280252.2| PREDICTED: GTPase-activating protein gyp7-like isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555739|ref|XP_002518905.1| conserved hypothetical protein [Ricinus communis] gi|223541892|gb|EEF43438.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225455274|ref|XP_002273720.1| PREDICTED: small G protein signaling modulator 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225455272|ref|XP_002273689.1| PREDICTED: small G protein signaling modulator 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516109|ref|XP_003526739.1| PREDICTED: GTPase-activating protein gyp7-like [Glycine max] Back     alignment and taxonomy information
>gi|356509190|ref|XP_003523334.1| PREDICTED: GTPase-activating protein gyp7-like [Glycine max] Back     alignment and taxonomy information
>gi|225455270|ref|XP_002273781.1| PREDICTED: small G protein signaling modulator 2-like isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255554359|ref|XP_002518219.1| conserved hypothetical protein [Ricinus communis] gi|223542624|gb|EEF44162.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449456417|ref|XP_004145946.1| PREDICTED: LOW QUALITY PROTEIN: GTPase-activating protein gyp7-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.324 0.309 0.870 2.4e-146
TAIR|locus:2082901539 AT3G49350 [Arabidopsis thalian 0.324 0.315 0.847 1.2e-136
TAIR|locus:2168591577 AT5G53570 [Arabidopsis thalian 0.322 0.292 0.829 6.4e-134
TAIR|locus:2152901528 AT5G24390 [Arabidopsis thalian 0.324 0.321 0.777 1.3e-127
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.316 0.391 0.331 4.3e-30
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.164 0.202 0.431 1.4e-29
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.164 0.119 0.397 1.2e-28
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.164 0.115 0.397 1e-27
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.166 0.201 0.444 2.7e-27
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.166 0.199 0.444 6.7e-27
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 782 (280.3 bits), Expect = 2.4e-146, Sum P(3) = 2.4e-146
 Identities = 148/170 (87%), Positives = 156/170 (91%)

Query:   355 EDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFV 414
             +D  AFWCF GFM KARHNFRLDEVGIRRQLS+VSKIIK KD HLYRHLE L+AEDCFFV
Sbjct:   380 DDVLAFWCFVGFMSKARHNFRLDEVGIRRQLSMVSKIIKFKDIHLYRHLENLEAEDCFFV 439

Query:   415 YRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAA 474
             YRMVVVLFRRELTFEQTLCLWEV+WADQAAIR GIAK+ WGR+RLRAPPT+DLLLYAIAA
Sbjct:   440 YRMVVVLFRRELTFEQTLCLWEVMWADQAAIRTGIAKATWGRIRLRAPPTEDLLLYAIAA 499

Query:   475 CVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI 524
              VLQRRK IIEKYS MDEIM+ECNSMAGHLDVWKLLDDAHDLVV LH KI
Sbjct:   500 SVLQRRKTIIEKYSGMDEIMKECNSMAGHLDVWKLLDDAHDLVVNLHDKI 549
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2082901 AT3G49350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168591 AT5G53570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152901 AT5G24390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000523001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (553 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 4e-13
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 8e-13
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 3e-05
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 355 EDHEAFWCFAGFMKKARHNFRLDEV-GIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFF 413
           ++ +AFWC    M++   NF L ++ G++  L  + +++K  D  LY+HL+ L      +
Sbjct: 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLY 167

Query: 414 VYRMVVVLFRRELTFEQTLCLWEVIWAD 441
             R  + LF REL  E  L +W+V++A+
Sbjct: 168 ALRWFLTLFARELPLEIVLRIWDVLFAE 195

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 524
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 99.97
COG5210496 GTPase-activating protein [General function predic 99.97
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.95
KOG2223586 consensus Uncharacterized conserved protein, conta 99.94
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.91
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.88
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.86
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.85
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.84
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.74
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.64
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.41
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.35
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.25
KOG1648813 consensus Uncharacterized conserved protein, conta 99.21
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 98.88
KOG2224781 consensus Uncharacterized conserved protein, conta 98.38
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 95.09
PF149611296 BROMI: Broad-minded protein 94.37
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-46  Score=381.88  Aligned_cols=312  Identities=24%  Similarity=0.440  Sum_probs=245.6

Q ss_pred             CCCCCHHHHhh-hcCCCCcccchhHHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009812           73 KHALLPKQWKT-FFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECR  151 (524)
Q Consensus        73 ~~plt~e~W~~-~fd~dGrl~~~~~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw~  151 (524)
                      .+.++-..|.. ++++.|.+.+. -+++|.||+|||+.++|++||||||.+|.+.||.|+|++++.+||+||+++.++-.
T Consensus       402 ~kki~~n~~~~t~lne~gqiedd-~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrl  480 (781)
T KOG2224|consen  402 VKKIGTNAFLGTHLNEKGQIEDD-LKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRL  480 (781)
T ss_pred             hhhhhHHHHHHhhhhhcccchhH-HHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            34566667775 89999999976 68999999999999999999999999999999999999999999999999986533


Q ss_pred             -HHhhhhccccccccccCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCccc
Q 009812          152 -KIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDER  230 (524)
Q Consensus       152 -~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~  230 (524)
                       .|.+++..                 .|++....+++|||+||||+                        +.+|.|+|+|
T Consensus       481 ysmspeeh~-----------------~fwknvq~tvdkdvvrtdrn------------------------n~ff~gddnp  519 (781)
T KOG2224|consen  481 YSMSPEEHI-----------------AFWKNVQFTVDKDVVRTDRN------------------------NPFFCGDDNP  519 (781)
T ss_pred             hcCCHHHHH-----------------HHHhheEEEEecceeeccCC------------------------CCcccCCCCC
Confidence             56554442                 23333335579999999998                        4678888866


Q ss_pred             cccccccccCCCCCCCCCCCCCccccccccccccccccccCCCCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhc
Q 009812          231 DKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRAN  310 (524)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~  310 (524)
                      .+.                                                               .+++++.       
T Consensus       520 n~e---------------------------------------------------------------~mk~ill-------  529 (781)
T KOG2224|consen  520 NTE---------------------------------------------------------------SMKNILL-------  529 (781)
T ss_pred             cHH---------------------------------------------------------------HHHHHHH-------
Confidence            322                                                               2333332       


Q ss_pred             CccccCCcchhhhh---HH--------------hhhhhhhhcccChhhhhhhhhHHhhcccchhHHHHHHHHHHHhhhhc
Q 009812          311 SEWTIYSPSQAAVS---EM--------------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHN  373 (524)
Q Consensus       311 p~~~~f~~~~~~~~---~~--------------~~~~igY~QGM~~y~llaP~l~Y~~~~l~E~dAFwcF~~Lm~~~~~~  373 (524)
                       ++..|++..+|-+   ..              .-.-+|..|||+|  +++|++.-   .++|.|+||||++||.+.-..
T Consensus       530 -n~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsd--lvapilae---vldesdtfwcfvglmqna~fv  603 (781)
T KOG2224|consen  530 -NFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSD--LVAPILAE---VLDESDTFWCFVGLMQNAFFV  603 (781)
T ss_pred             -hheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchh--hhhhHHHh---hhccccchhhhhhhhcceEEE
Confidence             2445544221110   00              0012466666663  46665432   258888888888888764333


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCC--CcchhHHHHHHhccccCChhhHHHHHHHHHhchhhhhhcccc
Q 009812          374 FRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAE--DCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAK  451 (524)
Q Consensus       374 f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~--~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~~~~g~~~  451 (524)
                      -.+....|..+|..|++||+.+.|.+|+||+.+|-+  .++||.||++++|+||||-..++|||++.|++..        
T Consensus       604 ~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~airiweacwa~y~--------  675 (781)
T KOG2224|consen  604 CSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYL--------  675 (781)
T ss_pred             eCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhh--------
Confidence            345556788999999999999999999999999865  4799999999999999999999999999999873        


Q ss_pred             ccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhhh
Q 009812          452 SAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHA  522 (524)
Q Consensus       452 ~~~~~~~~~~~~~~~~llfv~aAiLl~~r~~IL~~~~~~deil~~ln~l~~~iDv~~lL~~A~~L~~~~~~  522 (524)
                                  ++.|++|+|+|||-.+.+.++.+....|+++-.|.+++..+|-+-+|++|+.|.++|+.
T Consensus       676 ------------tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~ll~qfr~  734 (781)
T KOG2224|consen  676 ------------TDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGLLHQFRL  734 (781)
T ss_pred             ------------HHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHHHHHHhh
Confidence                        56899999999999999999998889999999999999999999999999999999874

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 7e-06
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 5e-05
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 3e-04
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 6e-04
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 344 EPSRIYHAARLEDHEA--FWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYR 401
           +PS      ++ D EA  FWC    +++   N+   + GI RQ+  +S+++K  D  LY 
Sbjct: 181 DPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYN 240
Query: 402 HLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEV 437
           H +    E   F +R +  L  RE      + +W+ 
Sbjct: 241 HFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDT 276
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 6e-25
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 6e-09
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 1e-23
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 4e-10
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-15
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2qq8_A334 TBC1 domain family member 14; structural genomics 2e-05
2qq8_A334 TBC1 domain family member 14; structural genomics 6e-04
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  105 bits (262), Expect = 6e-25
 Identities = 32/164 (19%), Positives = 70/164 (42%), Gaps = 24/164 (14%)

Query: 357 HEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYR 416
            + +WC +  +   + N+   + GI+ ++ ++ +++   D  ++RHL+Q +     F +R
Sbjct: 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFR 248

Query: 417 MVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACV 476
            +  L  RE+    T+ LW+   ++                           LY  AA +
Sbjct: 249 WMNNLLMREVPLRCTIRLWDTYQSE-------------------PDGFSHFHLYVCAAFL 289

Query: 477 LQRRKLIIEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDL 516
           ++ RK I+E+     E++    ++        D+  LL +A+ L
Sbjct: 290 VRWRKEILEE-KDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL 332
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-45  Score=388.85  Aligned_cols=299  Identities=17%  Similarity=0.293  Sum_probs=230.8

Q ss_pred             HHHHhhhcCCCCcccchhHHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009812           78 PKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRY  157 (524)
Q Consensus        78 ~e~W~~~fd~dGrl~~~~~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~qw~~l~~~~  157 (524)
                      .++|.+++...+. .+. .++++ +.++||++++|++||++|||++|.+.  ++|+.+.++++.+|..++++|..-    
T Consensus         8 ~~kw~~lL~~~~~-~d~-~~Lr~-l~~~GIP~~lR~~vW~~LLg~~~~~~--~~~~~~l~~~~~~Y~~l~~~~~~~----   78 (396)
T 1fkm_A            8 ISKFDNILKDKTI-INQ-QDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSD----   78 (396)
T ss_dssp             HHHHHHHHSSCSB-CCH-HHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSS----
T ss_pred             HHHHHHHHcCCCC-CCH-HHHHH-HHHcCCCHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhc----
Confidence            4789999987652 333 45665 55689999999999999999999986  478889999999999999886310    


Q ss_pred             ccccccccccCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCccCccCCCcccccccccc
Q 009812          158 EKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTC  237 (524)
Q Consensus       158 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~Dv~rt~rs~~~~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~~~~~~~  237 (524)
                      .                                  .                               +            
T Consensus        79 ~----------------------------------~-------------------------------~------------   81 (396)
T 1fkm_A           79 Q----------------------------------H-------------------------------S------------   81 (396)
T ss_dssp             S----------------------------------C-------------------------------S------------
T ss_pred             c----------------------------------C-------------------------------c------------
Confidence            0                                  0                               0            


Q ss_pred             ccCCCCCCCCCCCCCccccccccccccccccccCCCCcccCcccccCCCCCCCCchhHHHHHHHHHHhhhhhcCccccCC
Q 009812          238 EDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYS  317 (524)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~p~~~~f~  317 (524)
                                                                              .-....++|.+||.||||++.+|.
T Consensus        82 --------------------------------------------------------~~~~~~~qI~~Dv~RT~p~~~~F~  105 (396)
T 1fkm_A           82 --------------------------------------------------------RDIPTWHQIEIDIPRTNPHIPLYQ  105 (396)
T ss_dssp             --------------------------------------------------------THHHHHHHHHHHGGGSSTTSGGGG
T ss_pred             --------------------------------------------------------ccHHHHHHHHHHhhhhCCCccccc
Confidence                                                                    001234679999999999999997


Q ss_pred             cchhhhhHHh--------hhhhhhhcccChhhhhhhhhHHhhc---------------c---cc-------hhHHHHHHH
Q 009812          318 PSQAAVSEMK--------AQRSAQIVGLKDYDHLEPSRIYHAA---------------R---LE-------DHEAFWCFA  364 (524)
Q Consensus       318 ~~~~~~~~~~--------~~~igY~QGM~~y~llaP~l~Y~~~---------------~---l~-------E~dAFwcF~  364 (524)
                      ...+.....+        ...+||||||++  +++|++..+..               .   ++       |++|||||+
T Consensus       106 ~~~~~~~L~rIL~aya~~np~iGY~QGmn~--i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~  183 (396)
T 1fkm_A          106 FKSVQNSLQRILYLWAIRHPASGYVQGIND--LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLT  183 (396)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTTCSCTTHHH--HHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCcccCcHH--HHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHH
Confidence            5432222222        237999999995  79998753311               0   12       999999999


Q ss_pred             HHHHhhhhcCCCChHHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCCcchhHHHHHHhccccCChhhHHHHHHHHHhchhh
Q 009812          365 GFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAA  444 (524)
Q Consensus       365 ~Lm~~~~~~f~~~~~gi~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~refp~~~vlrlWD~~~a~g~~  444 (524)
                      +||++++++|..++.|+...+..|..||+.+||+||+||+++|+++.+|+++||+|+|+++||+++++||||++|++|..
T Consensus       184 ~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~  263 (396)
T 1fkm_A          184 KLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQ  263 (396)
T ss_dssp             HHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999810


Q ss_pred             hh-----------hccccccccccccCC------------------------------CCCCcHHHHHHHHHHHHHHHHH
Q 009812          445 IR-----------AGIAKSAWGRMRLRA------------------------------PPTDDLLLYAIAACVLQRRKLI  483 (524)
Q Consensus       445 ~~-----------~g~~~~~~~~~~~~~------------------------------~~~~~~llfv~aAiLl~~r~~I  483 (524)
                      ..           ++-....-...+...                              .+...+++|+|+|+|+.+|+.|
T Consensus       264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~L  343 (396)
T 1fkm_A          264 EVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQL  343 (396)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHHHHHHHHTHHHH
T ss_pred             cccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHH
Confidence            00           000000000000000                              0113789999999999999999


Q ss_pred             HhhcCCHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHhhh
Q 009812          484 IEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDLVVTLHA  522 (524)
Q Consensus       484 L~~~~~~deil~~ln~l~~~----iDv~~lL~~A~~L~~~~~~  522 (524)
                      |+  ++|++++++|+++|..    .|++.+|..|..+...+++
T Consensus       344 l~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~  384 (396)
T 1fkm_A          344 ME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKD  384 (396)
T ss_dssp             TT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             Hh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhc
Confidence            98  8999999999999864    6899999999988877764
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 524
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 7e-14
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 6e-04
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (165), Expect = 7e-14
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 380 GIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIW 439
           GI RQ+  +S+++K  D  LY H +    E   F +R +  L  RE      + +W+   
Sbjct: 4   GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 63

Query: 440 AD 441
           ++
Sbjct: 64  SE 65
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.89
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.87
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.6e-23  Score=195.35  Aligned_cols=66  Identities=18%  Similarity=0.372  Sum_probs=51.4

Q ss_pred             HHHhhhcCCCCcccchhHHHHHHHhcCCCCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009812           79 KQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKE  149 (524)
Q Consensus        79 e~W~~~fd~dGrl~~~~~~l~k~V~~gGi~p~lR~evW~fLLG~y~~~sT~~ER~~~~~~~~~eY~~lk~q  149 (524)
                      .+|..++.+ ..+.+. .++++. .++|||+++|+.||++|||++|.+++  +++....+++++|..++++
T Consensus         8 ~~~~~~l~~-~~~i~~-~~lr~l-~~~Gip~~lR~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~~~~~   73 (194)
T d1fkma1           8 SKFDNILKD-KTIINQ-QDLRQI-SWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKH   73 (194)
T ss_dssp             HHHHHHHSS-CSBCCH-HHHHHH-HTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc-cCCCCH-HHHHHH-HHcCCChHHHHHHHHHHHhhcCCchh--hHHHHHHHHhhhhhhhhhh
Confidence            568888864 445544 567655 56899999999999999999999886  5666778888888776644
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure