Citrus Sinensis ID: 009819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
Protein Sequence
MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccccccccccEEEEEcccccccEEEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccHHHHHHHHHHHccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHccccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEcccEEEEEEcccccEcEEccEEEEccccccccEEEEEEEccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEccccHHHHHHHHccccccccccEEEEEcccccccHHHccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEccHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccccccccccHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccHHHHHcccEEEEcccccHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHccccccccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
mwncgigpiktyLRYNALSFFFLQVRELswlqwhpfsvsssplegkyhSSVLIKVLGEWTENLRDYILSksesdsqvgppppvpppeghpppvhppqgpvrnlMYENLILVAGgiseanphvgpplpvpppqgapppgpplqeegpppqgphppvpppqgpppplpppkgnlmyENLIVVAGgisetepqvgppppvpppqgsppqrpppsrhpllpptkitasvegpyghevpyHLMYENLILVAGGIGISPFLAILSDILHRInegksclprnVLIVWAVKKSNELSLLSNfykesicpffsdklnLETFIYVtreteppleegelhktmsssiypvpsgcAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILyvnpfnihSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWErkssarenykddsievdnaqnvgtmahndirkkdtksstnilygsrpdfkeifgstskkwghvdvgvivcgppslqssVAKEIrshslmrechdpifhfhshsfdl
Flexible Loop (DISEMBL)
MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTREteppleegelHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKddsievdnaqnvgtmahndirkkdtksstnilygsrPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Low Complexity Region (SEG)
MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSqvgppppvpppeghpppvhppqgpvRNLMYENLILVAGGISEANphvgpplpvpppqgapppgpplqeegpppqgphppvpppqgpppplpppKGNLMYENLIVVAGGISETEpqvgppppvpppqgsppqrpppsrhpllppTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Disordered region (IsUnstruct)
*WNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL*********************************NLMYENLILVAGGI********************************************************LMYENLIVVAGG****************************************SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR*****************SIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWER***************************************ILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS*************LMRECHDPIFHF*******
Disordered Region (DISOPRED)
*WNCGI*PIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL*************PVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG********************************************PKGNLMYENLIVVAGGISETEPQVG***************************KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI*PFFSDKLNLETFIYVTRET**********************************NVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHL*********************************KKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Disordered Region (DISEMBL)
MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKS**************PEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP*****************************PPPPLPPPKGNLMYENLIVVAGGISET************************RHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Disordered Region (DISPRO)
*WNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK********PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSS*************************IRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	524	2.2.26 [Sep-21-2011]
Q8RWS6	738	Ferric reduction oxidase	yes	no	0.656	0.466	0.535	1e-105
Q3KTM0	747	Ferric reduction oxidase	no	no	0.658	0.461	0.534	1e-104
Q9FLW2	707	Ferric reduction oxidase	no	no	0.566	0.420	0.307	7e-25
Q8W110	699	Ferric reduction oxidase	no	no	0.564	0.423	0.283	7e-22
P92949	725	Ferric reduction oxidase	no	no	0.526	0.380	0.247	1e-14
Q9LMM2	704	Probable ferric reduction	no	no	0.503	0.375	0.271	3e-13
Q8VY13	728	Ferric reduction oxidase	no	no	0.209	0.151	0.382	1e-09
F4I4K7	717	Ferric reduction oxidase	no	no	0.181	0.132	0.346	6e-06

>sp|Q8RWS6|FRO6_ARATH Ferric reduction oxidase 6 OS=Arabidopsis thaliana GN=FRO6 PE=2 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/368 (53%), Positives = 253/368 (68%), Gaps = 24/368 (6%)

Query: 167 PPKGNLMYENLIVVAGG-ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 225
           P  GN     LI V GG  ++   Q+           +  Q   P  +P     KIT  V
Sbjct: 385 PLDGNHHVAVLIKVLGGWTAKLRDQLSNLYEAE----NQDQLISPQSYP-----KITTCV 435

Query: 226 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS 285
           EGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+VWA+K S
Sbjct: 436 EGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVVWAIKNS 495

Query: 286 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YPVPSGCA 344
           +ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P  +GC+
Sbjct: 496 DELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLPRTNGCS 555

Query: 345 MSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVL 404
           MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ CMV  VL
Sbjct: 556 MSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGCMVASVL 615

Query: 405 IFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHN----DIR----KKDTKSS 456
           IFGG V+ FWH WE K+   E   +D ++++     G   HN    +++    ++D ++ 
Sbjct: 616 IFGGLVVVFWHRWEHKTGEVEANGNDKVDLN-----GEETHNPSAAELKGLAIEEDVQNY 670

Query: 457 TNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFH 516
           T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+FH
Sbjct: 671 TTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPLFH 730

Query: 517 FHSHSFDL 524
           F+SHSFDL
Sbjct: 731 FNSHSFDL 738

Ferric chelate reductase involved in iron uptake by shoot and leaf cells. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 6EC: .EC: 1EC: .EC: 7

>sp|Q3KTM0|FRO7_ARATH Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1

 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/367 (53%), Positives = 251/367 (68%), Gaps = 22/367 (5%)

Query: 167 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 226
           P  GN     LI V GG +    ++           +  Q   P  +P     KIT  VE
Sbjct: 394 PLDGNHHVAVLIKVLGGWT---AKLRDQLSTLYEAENQDQLISPESYP-----KITTCVE 445

Query: 227 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN 286
           GPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK CLP  VL+VWA+K S+
Sbjct: 446 GPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKDCLPGKVLVVWAIKNSD 505

Query: 287 ELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YPVPSGCAM 345
           ELSLLS     SIC FFS KLNLE  IYVTR++EP LE+G +HK +  S+  P  +GC+M
Sbjct: 506 ELSLLSAIDIPSICHFFSKKLNLEIHIYVTRQSEPCLEDGMVHKVVHPSVKTPWTNGCSM 565

Query: 346 SVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLI 405
           SVLVGTG+N+WSGLY+I ST+GFI ++ L++I Y+N +NI +WWYKGLLF+ CMV  VLI
Sbjct: 566 SVLVGTGDNIWSGLYLIISTIGFIAMITLVDIFYINKYNITTWWYKGLLFVVCMVASVLI 625

Query: 406 FGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHN----DIR----KKDTKSST 457
           FGG V+ FWH WE K+   E   +D ++++     G   HN    +++    ++D ++ T
Sbjct: 626 FGGLVVVFWHRWEHKTGEVEANGNDKVDLN-----GEETHNPSAAELKGLAIEEDVQNYT 680

Query: 458 NILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHF 517
            I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+FHF
Sbjct: 681 TIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPLFHF 740

Query: 518 HSHSFDL 524
           +SHSFDL
Sbjct: 741 NSHSFDL 747

Ferric chelate reductase involved in iron mobilization from the cytosol into the chloroplast. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. Might be involved iron homeostasis in trichomes.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9FLW2|FRO5_ARATH Ferric reduction oxidase 5 OS=Arabidopsis thaliana GN=FRO5 PE=2 SV=1

 Score =  115 bits (289), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 169/338 (50%), Gaps = 41/338 (12%)

Query: 197 VPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG---HEVPYHLMYENLILVAGGIGISP 253
           V   QGS  Q+     H       +  S EGPYG    +V  H   ++LILV GG G++P
Sbjct: 380 VIRKQGSWTQKLYT--HLSSSIDSLEVSTEGPYGPNSFDVSRH---DSLILVGGGSGVTP 434

Query: 254 FLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFI 313
           F++++ +++ +     + LP NVL+V A K  ++L+ L   +   I      KLNL    
Sbjct: 435 FISVIRELIFQSQNRSTKLP-NVLLVCAFKNYHDLAFLDLIFPSDISVSDISKLNLRIEA 493

Query: 314 YVTRETEPPLEEGELHKTMSSSIY-PVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILV 372
           Y+TRE + P E  + HK + +  + P P    +S ++G  N +W G+ ++SS V F++L+
Sbjct: 494 YITREDKKP-ETTDDHKLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLI 552

Query: 373 ALLNILYVNPFN-----IHSWWYKGL--LFLACMVGGVLIFGGTVIGFWHLWERKSSARE 425
            ++   Y+ P +     I+++ Y+ L  +FL C    V IF  + I F  LW RK   +E
Sbjct: 553 GIVTRYYIYPVDHNTGSIYNFTYRVLWVMFLGC----VCIFISSSIIF--LW-RKKENKE 605

Query: 426 NYKDDSIEVDNAQNV------GTMAHNDIRK------KDTKSSTNILYGSRPDFKEIFGS 473
             KD   +V + +        G+  H   R+      +    +T++ +GS+P+ K+I   
Sbjct: 606 GDKDSKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILFE 665

Query: 474 TSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECH 511
                G  DVGV+VCGP  ++  VAK I S  L +  H
Sbjct: 666 AE---GSEDVGVMVCGPKKMRHEVAK-ICSSGLAKNLH 699

Ferric chelate reductase probably involved in iron reduction in shoots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. May act in iron metabolism in reproductive organs.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8W110|FRO4_ARATH Ferric reduction oxidase 4 OS=Arabidopsis thaliana GN=FRO4 PE=2 SV=1

 Score =  105 bits (263), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 167/339 (49%), Gaps = 43/339 (12%)

Query: 197 VPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG---HEVPYHLMYENLILVAGGIGISP 253
           V   QGS  Q+     H       +  S EGPYG    +V  H    +LILV+GG GI+P
Sbjct: 372 VIRRQGSWTQKLYT--HLSSSIDSLEVSTEGPYGPNSFDVSRH---NSLILVSGGSGITP 426

Query: 254 FLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFI 313
           F++++ +++ +     + LP +VL+V + K  ++L+ L   +   +      +LNL    
Sbjct: 427 FISVIRELISQSQNKSTKLP-DVLLVCSFKHYHDLAFLDLIFPLDMSASDISRLNLRIEA 485

Query: 314 YVTRETEPPLEEGELHKTMSSSIY-PVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILV 372
           Y+TRE + P E  + H+ + +  + P P    +S ++G  N +W G+ ++SS V F++L+
Sbjct: 486 YITREDKKP-ETTDDHRLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLI 544

Query: 373 ALLNILYVNPFN-----IHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENY 427
            ++   Y+ P +     I+++ Y+GL      +G   IF  + + F  LW +K    +N 
Sbjct: 545 GIVTRYYIYPVDHNTGSIYNFSYRGL--WDMFLGSACIFISSSVVF--LWRKK----QNK 596

Query: 428 KDDSIEVDNAQNV---------GTMAHNDIRK------KDTKSSTNILYGSRPDFKEIFG 472
           + D    +  Q+V         G+  H   R+      +    +T++ +GS+P+ K+I  
Sbjct: 597 EGDKEFKNQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILL 656

Query: 473 STSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECH 511
                 G  DVGV+VCGP  ++  VAK I S  L +  H
Sbjct: 657 EAE---GSEDVGVMVCGPRKMRHEVAK-ICSSGLAKNLH 691

Ferric chelate reductase. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|P92949|FRO2_ARATH Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 155/331 (46%), Gaps = 55/331 (16%)

Query: 220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 279
           ++  SVEGPYG      L +E L++V GG GI+PF++++ D++   ++ ++C    + ++
Sbjct: 422 RLAVSVEGPYGPASADFLRHEALVMVCGGSGITPFISVIRDLIAT-SQKETCKIPKITLI 480

Query: 280 WAVKKSNELSLLSNFYKESICPF------FSDKLNLETFIYVTRETEPPLEEGELHKTMS 333
            A KKS+E+S+L     + + P        S  +N++   ++TR+ +   +E +  K  +
Sbjct: 481 CAFKKSSEISML-----DLVLPLSGLETELSSDINIKIEAFITRDNDAG-DEAKAGKIKT 534

Query: 334 SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSW 388
               P  S  ++S ++G  + +W G  + SS + F+I++ ++   Y+ P +     I+S 
Sbjct: 535 LWFKPSLSDQSISSILGPNSWLWLGAILASSFLIFMIIIGIITRYYIYPIDHNTNKIYSL 594

Query: 389 WYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTM----- 443
             K ++++  +   ++      +    LW +K       K   +E    QNV        
Sbjct: 595 TSKTIIYILVISVSIMATCSAAM----LWNKK-------KYGKVESKQVQNVDRPSPTSS 643

Query: 444 -----AHNDIRKKDTK------SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS 492
                 +N +R+ ++         TN+ +G RP+ K++            VGV+VCGP  
Sbjct: 644 PTSSWGYNSLREIESTPQESLVQRTNLHFGERPNLKKLLLDVEGS----SVGVLVCGPKK 699

Query: 493 LQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 523
           ++  VA EI S  L         HF S SF 
Sbjct: 700 MRQKVA-EICSSGLAEN-----LHFESISFS 724

Flavocytochrome that transfers electrons across the plasma membrane to reduce ferric iron chelates to form soluble ferrous iron in the rhizosphere. May be involved in the delivery of iron to developing pollen grains. Acts also as a copper-chelate reductase. Involved in glycine betaine-mediated chilling tolerance and reactive oxygen species accumulation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9LMM2|FRO1_ARATH Probable ferric reduction oxidase 1 OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 144/287 (50%), Gaps = 23/287 (8%)

Query: 220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 279
           ++  SVEGPYG      L +E+L++V+GG GI+PF++I+ D+ +  +  K  +P+  LI 
Sbjct: 415 RLAVSVEGPYGPSSTDFLRHESLVMVSGGSGITPFISIVRDLFYMSSTHKCKIPKMTLIC 474

Query: 280 WAVKKSNELSLLSNFYKES-ICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYP 338
            A K S++LS+L      S +    +  ++++   +VTRE +  ++E   ++ +  + + 
Sbjct: 475 -AFKNSSDLSMLDLILPTSGLTTDMASFVDIQIKAFVTREEKTSVKESTHNRNIIKTRHF 533

Query: 339 VPSGCAMSVLVGTGNNVWSGLYVI--SSTVGFIILVALLNILYVNPFNIHS----WWYKG 392
            P+     +    G N W  L  I  SS + FI+++A++   +++P + +S    W YK 
Sbjct: 534 KPNVSDQPISPILGPNSWLCLAAILSSSFMIFIVIIAIITRYHIHPIDQNSEKYTWAYKS 593

Query: 393 LLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKD 452
           L++L  +   V+      +    LW +K    + Y  +   VDN   V   +     ++ 
Sbjct: 594 LIYLVSISITVVTTSTAAM----LWNKK----KYYAKNDQYVDNLSPVIIESSP---QQL 642

Query: 453 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAK 499
              ST+I YG RP+  ++            VG++VCGP  ++  VAK
Sbjct: 643 ISQSTDIHYGERPNLNKLLVGLKGS----SVGILVCGPKKMRQKVAK 685

Ferric chelate reductase involved in iron reduction in roots (By similarity). May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8VY13|FRO8_ARATH Ferric reduction oxidase 8, mitochondrial OS=Arabidopsis thaliana GN=FRO8 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 5/115 (4%)

Query: 221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
           I   VEGPYG      L Y+NL LVAGGIGI+PFL+IL ++  + N  KS  P+ V +V+
Sbjct: 404 IIVRVEGPYGPASVDFLRYDNLFLVAGGIGITPFLSILKELASK-NRLKS--PKRVQLVF 460

Query: 281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSS 335
           AV+   +L++L         P ++  LNL+  ++VT+E +P      L + ++ S
Sbjct: 461 AVRTFQDLNMLLPIASIIFNPIYN--LNLKLKVFVTQEKKPSNGTTTLQEFLAQS 513

Ferric chelate reductase probably involved in iron reduction in leaf veins for transport. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|F4I4K7|FRO3_ARATH Ferric reduction oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=FRO3 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
           +  SVEGPYG     +L +++L++V+GG GI+PF++I+ D+L+  +      P+  LI  
Sbjct: 437 LAVSVEGPYGPASTDYLRHDSLVMVSGGSGITPFISIIRDLLYVSSTNAYKTPKITLIC- 495

Query: 281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 318
           A K S++LS+L+     S     S  ++++   +VTRE
Sbjct: 496 AFKNSSDLSMLNLILPNS--TEISSFIDIQIKAFVTRE 531

Ferric chelate reductase involved in iron reduction in roots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
255556713	735	ferric-chelate reductase, putative [Rici	0.671	0.478	0.612	1e-124
359486141	735	PREDICTED: ferric reduction oxidase 7, c	0.593	0.423	0.663	1e-122
297739426	735	unnamed protein product [Vitis vinifera]	0.593	0.423	0.663	1e-122
224057952	734	predicted protein [Populus trichocarpa]	0.576	0.411	0.663	1e-118
357448309	740	NADPH oxidase [Medicago truncatula] gi|8	0.583	0.413	0.663	1e-116
356555827	732	PREDICTED: probable ferric reductase tra	0.576	0.412	0.651	1e-113
449431912	740	PREDICTED: ferric reduction oxidase 7, c	0.578	0.409	0.598	1e-105
356532942	734	PREDICTED: uncharacterized protein LOC10	0.547	0.391	0.644	1e-105
110739950	479	FRO2-like protein [Arabidopsis thaliana]	0.656	0.718	0.535	1e-103
8978270	721	FRO2-like protein; NADPH oxidase-like [A	0.656	0.477	0.535	1e-103

>gi|255556713|ref|XP_002519390.1| ferric-chelate reductase, putative [Ricinus communis] gi|223541457|gb|EEF43007.1| ferric-chelate reductase, putative [Ricinus communis]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/359 (61%), Positives = 264/359 (73%), Gaps = 7/359 (1%)

Query: 166 PPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 225
            P  G      LI V G    TE   G        + +  Q  P   HP     KITA V
Sbjct: 384 SPLDGKYHLTILIKVLG--KWTEKLRGNVKNRSEAEVAELQDQPSQPHP-----KITACV 436

Query: 226 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS 285
           EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSD+LHRINE ++CLP+N+L+ WA+KKS
Sbjct: 437 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDVLHRINEERACLPKNILVTWAIKKS 496

Query: 286 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAM 345
           +EL LLS    ESICP+FSDKLNLE  IYVTRET   LEEG +HK  +SS+     GC M
Sbjct: 497 SELPLLSTIDMESICPYFSDKLNLEVHIYVTRETYAQLEEGLVHKATNSSVITSSKGCGM 556

Query: 346 SVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLI 405
           SVLVGTG+N+WSGLYVI S++GF+IL+ L+++ Y+N + IHSWWYKGLLF+ACMV  +L+
Sbjct: 557 SVLVGTGDNIWSGLYVIISSMGFVILLGLVDVYYINEYGIHSWWYKGLLFIACMVVSILV 616

Query: 406 FGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRP 465
           FGG V+G WHLWE K SA E  KD+ ++    +N   +A+ D+  K+  SST I YGSRP
Sbjct: 617 FGGCVVGLWHLWEMKMSALEENKDNGLKTREVKNNENVANKDLYGKNYASSTMIQYGSRP 676

Query: 466 DFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL 524
           DFKEIFGS SK+WGHVDVGVIVCGPP+L +SVA+EIRS +L RE HDP+FH+HSHSFDL
Sbjct: 677 DFKEIFGSISKRWGHVDVGVIVCGPPNLGTSVAREIRSQNLRRESHDPVFHYHSHSFDL 735

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486141|ref|XP_002266723.2| PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Vitis vinifera]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 256/312 (82%), Gaps = 1/312 (0%)

Query: 214 PLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLP 273
           P  P +KITASVEGPYGHE PYHLMYENL+LVAGGIGISPFLAILSDILH   E K+CLP
Sbjct: 424 PFQPHSKITASVEGPYGHESPYHLMYENLVLVAGGIGISPFLAILSDILHSARENKTCLP 483

Query: 274 RNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMS 333
           RN+LI+WA+KKSNELSLLS    ESICP FSDK+N+E  IYVTRE+EPPLEEG+++KT++
Sbjct: 484 RNILIIWAIKKSNELSLLSTVDMESICPSFSDKVNIEIQIYVTRESEPPLEEGKINKTVN 543

Query: 334 SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGL 393
           SS++PV SG  +SVLVGTGNN+WSG+YVI   +GF++ + LLNI Y+NPF I+SWWYKGL
Sbjct: 544 SSVFPVLSGRGLSVLVGTGNNIWSGIYVILPVLGFVLFMDLLNIYYINPFGINSWWYKGL 603

Query: 394 LFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV-GTMAHNDIRKKD 452
           LF+ CMV  V+IFGG V+GFWHLWER+ S  E  +D+ +++   Q++ G+M   +  ++ 
Sbjct: 604 LFVLCMVASVVIFGGAVVGFWHLWERRISESEELEDNQMKIGMVQHINGSMEDKESSQES 663

Query: 453 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHD 512
              ++ I YG RPDFKEIFGS S++WGHVDVGVIVCGPP+LQ+SVAKE RS ++ R CHD
Sbjct: 664 LAGTSTIQYGCRPDFKEIFGSISERWGHVDVGVIVCGPPTLQASVAKECRSQNIRRRCHD 723

Query: 513 PIFHFHSHSFDL 524
           PIFHF+SHSFDL
Sbjct: 724 PIFHFNSHSFDL 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739426|emb|CBI29608.3| unnamed protein product [Vitis vinifera]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 256/312 (82%), Gaps = 1/312 (0%)

Query: 214 PLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLP 273
           P  P +KITASVEGPYGHE PYHLMYENL+LVAGGIGISPFLAILSDILH   E K+CLP
Sbjct: 424 PFQPHSKITASVEGPYGHESPYHLMYENLVLVAGGIGISPFLAILSDILHSARENKTCLP 483

Query: 274 RNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMS 333
           RN+LI+WA+KKSNELSLLS    ESICP FSDK+N+E  IYVTRE+EPPLEEG+++KT++
Sbjct: 484 RNILIIWAIKKSNELSLLSTVDMESICPSFSDKVNIEIQIYVTRESEPPLEEGKINKTVN 543

Query: 334 SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGL 393
           SS++PV SG  +SVLVGTGNN+WSG+YVI   +GF++ + LLNI Y+NPF I+SWWYKGL
Sbjct: 544 SSVFPVLSGRGLSVLVGTGNNIWSGIYVILPVLGFVLFMDLLNIYYINPFGINSWWYKGL 603

Query: 394 LFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV-GTMAHNDIRKKD 452
           LF+ CMV  V+IFGG V+GFWHLWER+ S  E  +D+ +++   Q++ G+M   +  ++ 
Sbjct: 604 LFVLCMVASVVIFGGAVVGFWHLWERRISESEELEDNQMKIGMVQHINGSMEDKESSQES 663

Query: 453 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHD 512
              ++ I YG RPDFKEIFGS S++WGHVDVGVIVCGPP+LQ+SVAKE RS ++ R CHD
Sbjct: 664 LAGTSTIQYGCRPDFKEIFGSISERWGHVDVGVIVCGPPTLQASVAKECRSQNIRRRCHD 723

Query: 513 PIFHFHSHSFDL 524
           PIFHF+SHSFDL
Sbjct: 724 PIFHFNSHSFDL 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057952|ref|XP_002299406.1| predicted protein [Populus trichocarpa] gi|222846664|gb|EEE84211.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 249/312 (79%), Gaps = 10/312 (3%)

Query: 217 PPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 276
           P  KITASVEGPYGHE PYHLMYENLILVAGGIGISPFLAILSDILHR+NEG+ CLPRN+
Sbjct: 429 PRPKITASVEGPYGHEAPYHLMYENLILVAGGIGISPFLAILSDILHRVNEGRPCLPRNI 488

Query: 277 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI 336
           LIVWAVK+SNEL LLS    ESICP+F DKLNLE  IYVTRE++PPLEEG++H    SS+
Sbjct: 489 LIVWAVKRSNELPLLSTMDLESICPYFYDKLNLEISIYVTRESDPPLEEGDIHNVTVSSV 548

Query: 337 YPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFL 396
            P+  GC MSVLVGTG+++WSGLYVISSTVGF+I + +L I Y+NP +I +WWYKGLLF 
Sbjct: 549 CPMSKGCGMSVLVGTGDSIWSGLYVISSTVGFVISLGILYIFYINPCSISTWWYKGLLFF 608

Query: 397 ACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHND----IRKKD 452
            CM+  V+IFGG V+G WHLWE+K SARE Y+      +N    G + HN+    + +K+
Sbjct: 609 GCMLASVVIFGGLVVGLWHLWEKKISAREEYE------ENRLKPGMVQHNEDAVNLFQKN 662

Query: 453 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHD 512
             S T I YGSRPDFK+IFGS S+ WG+ DVGVI+CGPP+L++SVA+EIRS +L RE H 
Sbjct: 663 HTSITTIQYGSRPDFKDIFGSISEHWGYADVGVIICGPPTLETSVAREIRSRNLKRESHH 722

Query: 513 PIFHFHSHSFDL 524
           P+FHFHSH+FDL
Sbjct: 723 PVFHFHSHAFDL 734

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448309|ref|XP_003594430.1| NADPH oxidase [Medicago truncatula] gi|87241054|gb|ABD32912.1| Ferric reductase-like transmembrane component [Medicago truncatula] gi|355483478|gb|AES64681.1| NADPH oxidase [Medicago truncatula]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/309 (66%), Positives = 249/309 (80%), Gaps = 3/309 (0%)

Query: 217 PPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 276
           P   +TASVEGPYGHEVPYHLMYENLILVAGGIG+SPFLAILSDILHR+ EGK C PRN+
Sbjct: 434 PHMVVTASVEGPYGHEVPYHLMYENLILVAGGIGLSPFLAILSDILHRVREGKPCRPRNI 493

Query: 277 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI 336
           LIVWAVKKSNEL LLS    E+ICP FSDK+N+   I+VTRE++PPLEEG  +K + S  
Sbjct: 494 LIVWAVKKSNELPLLSTVDMETICPCFSDKVNINVHIFVTRESDPPLEEGYNYKPIKSLC 553

Query: 337 -YPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLF 395
            +P+PS   MS LVGTGNN WSGLYVISST+GF+IL+ALLNI Y+NP  +  WWYKGLL 
Sbjct: 554 PFPMPSDYGMSGLVGTGNNFWSGLYVISSTLGFVILLALLNIYYINPVGVVIWWYKGLLL 613

Query: 396 LACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKS 455
           + CMV  V+IFGG V+GFW++WE++SS ++  K ++I+VD  +  G++ H D+ + +   
Sbjct: 614 VVCMVASVVIFGGIVVGFWNMWEKQSSLKD--KSNNIKVDKIEQNGSVDHKDLTQYNIAK 671

Query: 456 STNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIF 515
            T I YGSRPDFKEIF S S+KWGHVDVG++VCGPP+LQSSVA+EIRSHSL R+ + PIF
Sbjct: 672 LTTIRYGSRPDFKEIFESMSEKWGHVDVGILVCGPPTLQSSVAQEIRSHSLTRQPYHPIF 731

Query: 516 HFHSHSFDL 524
           HFHSHSFDL
Sbjct: 732 HFHSHSFDL 740

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555827|ref|XP_003546231.1| PREDICTED: probable ferric reductase transmembrane component-like [Glycine max]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/304 (65%), Positives = 242/304 (79%), Gaps = 2/304 (0%)

Query: 221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
           IT SVEGPYGHEVPYHLMYENLILVAGGIG+SPFLAILSDILHR+ EGK C  RN+L+VW
Sbjct: 431 ITTSVEGPYGHEVPYHLMYENLILVAGGIGLSPFLAILSDILHRVREGKPCQSRNILLVW 490

Query: 281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 340
           AVKKSNEL LLS    +SICP FSDK+N++  IYVTRE++PP+EEG  +K + SS  P+ 
Sbjct: 491 AVKKSNELPLLSTIDMQSICPSFSDKVNIDIHIYVTRESDPPVEEGYSYKPIKSSFCPMA 550

Query: 341 SGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMV 400
           S C MSVLVGTG+NVWSGLYVISSTVGF+IL+ALL + Y+ PF+I +WWYKGLL++ CMV
Sbjct: 551 SDCGMSVLVGTGDNVWSGLYVISSTVGFVILLALLYVYYIAPFHIETWWYKGLLYVICMV 610

Query: 401 GGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNIL 460
             V+IFGG+V+  WH+WE+++S ++N  D   +VD     G++      +     ST I 
Sbjct: 611 ASVVIFGGSVVAMWHIWEKQNSLKDNSNDT--KVDKIHQNGSLTPKAPSQVSIAKSTVIR 668

Query: 461 YGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSH 520
           YGSRPDFKEI+ S S+KWG VDVG+IVCGP +LQ+SVA+EIRSHS+ R+ H PIFHFHSH
Sbjct: 669 YGSRPDFKEIYESMSEKWGLVDVGIIVCGPSTLQTSVAEEIRSHSMTRQRHHPIFHFHSH 728

Query: 521 SFDL 524
           SFDL
Sbjct: 729 SFDL 732

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431912|ref|XP_004133744.1| PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Cucumis sativus]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/306 (59%), Positives = 231/306 (75%), Gaps = 3/306 (0%)

Query: 221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
           +T SVEGPYGHE PYHLMYENLILVAGGIGISPFLAILSD+LHRI +GK+CLP+ +L+VW
Sbjct: 436 MTVSVEGPYGHESPYHLMYENLILVAGGIGISPFLAILSDVLHRIRDGKTCLPKKILVVW 495

Query: 281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 340
           A+K S+EL LLS    +SICPFF+DKLN++  IYVTR+++PP  EGE+  +  SSI P+ 
Sbjct: 496 AIKTSDELPLLSTLNVDSICPFFADKLNIDISIYVTRQSQPP-SEGEIQGSKVSSICPLS 554

Query: 341 SGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMV 400
            G  MSVLVGTG+NVWSGLYVI ST+G + LV  +++ Y+NPF+I  WWYKGLLFL CMV
Sbjct: 555 KGSNMSVLVGTGDNVWSGLYVIFSTLGLVFLVGFMDLFYINPFHIIKWWYKGLLFLLCMV 614

Query: 401 GGVLIFGGTVIGFWHLWERKSSAR--ENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTN 458
             V++FGG V+  W LWE+  S++   ++ +D   VD      + A  D+      +ST 
Sbjct: 615 ASVVLFGGLVVALWSLWEQYISSKGTSDHNNDIENVDEESPKHSFAQKDLNSNALATSTT 674

Query: 459 ILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFH 518
           I YG RP+F+EI GS S+ WG VD+GV++CGP +LQSSVAK IRSH++ R  H PIFHFH
Sbjct: 675 IEYGLRPNFEEILGSVSENWGKVDIGVLICGPSTLQSSVAKAIRSHNMGRRSHHPIFHFH 734

Query: 519 SHSFDL 524
           SHSFDL
Sbjct: 735 SHSFDL 740

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532942|ref|XP_003535028.1| PREDICTED: uncharacterized protein LOC100804994 [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/290 (64%), Positives = 232/290 (80%), Gaps = 3/290 (1%)

Query: 221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
           IT SVEGPYGHEVPYHLMYENLILVAGGIG+SPFLAILSDILHR+ EGK C PRN+L+VW
Sbjct: 432 ITTSVEGPYGHEVPYHLMYENLILVAGGIGLSPFLAILSDILHRVREGKPCQPRNILLVW 491

Query: 281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 340
           AVKKSNEL LLS    ESICP FS+K+N++  IYVTRE++PPLEEG  +K + SS  P+ 
Sbjct: 492 AVKKSNELPLLSTIDMESICPSFSNKVNIDIHIYVTRESDPPLEEGYSYKPIKSSFCPMA 551

Query: 341 SGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMV 400
           S C MSVLVGTG+N WSGLYVISSTVGF+IL+ALL + YV PF+I +WWY+GLL++ CMV
Sbjct: 552 SDCGMSVLVGTGDNFWSGLYVISSTVGFVILLALLYVYYVTPFHIETWWYRGLLYVICMV 611

Query: 401 GGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDT-KSSTNI 459
             V+IFGG+V+  WH+WE+++S ++  K +  +VD     G++A  D  +  +   ST I
Sbjct: 612 ASVVIFGGSVVAMWHIWEKQNSLKD--KSNDTKVDKIHQNGSLATKDQSQDSSIAKSTVI 669

Query: 460 LYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRE 509
            YGSRP+FKEI+ S S+KWG VDVGVIVCGP +LQ+SVA+EIRSHS+ R+
Sbjct: 670 HYGSRPNFKEIYDSISEKWGLVDVGVIVCGPSTLQTSVAEEIRSHSMTRQ 719

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110739950|dbj|BAF01880.1| FRO2-like protein [Arabidopsis thaliana]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/368 (53%), Positives = 253/368 (68%), Gaps = 24/368 (6%)

Query: 167 PPKGNLMYENLIVVAGG-ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 225
           P  GN     LI V GG  ++   Q+           +  Q   P  +P     KIT  V
Sbjct: 126 PLDGNHHVAVLIKVLGGWTAKLRDQLSNLYEAE----NQDQLISPQSYP-----KITTCV 176

Query: 226 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS 285
           EGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+VWA+K S
Sbjct: 177 EGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVVWAIKNS 236

Query: 286 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YPVPSGCA 344
           +ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P  +GC+
Sbjct: 237 DELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLPRTNGCS 296

Query: 345 MSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVL 404
           MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ CMV  VL
Sbjct: 297 MSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGCMVASVL 356

Query: 405 IFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHN----DIR----KKDTKSS 456
           IFGG V+ FWH WE K+   E   +D ++++     G   HN    +++    ++D ++ 
Sbjct: 357 IFGGLVVVFWHRWEHKTGEVEANGNDKVDLN-----GEETHNPSAAELKGLAIEEDVQNY 411

Query: 457 TNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFH 516
           T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+FH
Sbjct: 412 TTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPLFH 471

Query: 517 FHSHSFDL 524
           F+SHSFDL
Sbjct: 472 FNSHSFDL 479

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8978270|dbj|BAA98161.1| FRO2-like protein; NADPH oxidase-like [Arabidopsis thaliana]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/368 (53%), Positives = 253/368 (68%), Gaps = 24/368 (6%)

Query: 167 PPKGNLMYENLIVVAGG-ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 225
           P  GN     LI V GG  ++   Q+           +  Q   P  +P     KIT  V
Sbjct: 368 PLDGNHHVAVLIKVLGGWTAKLRDQLSNLYEAE----NQDQLISPQSYP-----KITTCV 418

Query: 226 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS 285
           EGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+VWA+K S
Sbjct: 419 EGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVVWAIKNS 478

Query: 286 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YPVPSGCA 344
           +ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P  +GC+
Sbjct: 479 DELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLPRTNGCS 538

Query: 345 MSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVL 404
           MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ CMV  VL
Sbjct: 539 MSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGCMVASVL 598

Query: 405 IFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHN----DIR----KKDTKSS 456
           IFGG V+ FWH WE K+   E   +D ++++     G   HN    +++    ++D ++ 
Sbjct: 599 IFGGLVVVFWHRWEHKTGEVEANGNDKVDLN-----GEETHNPSAAELKGLAIEEDVQNY 653

Query: 457 TNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFH 516
           T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+FH
Sbjct: 654 TTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPLFH 713

Query: 517 FHSHSFDL 524
           F+SHSFDL
Sbjct: 714 FNSHSFDL 721

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
TAIR|locus:2157027	738	FRO6 "ferric reduction oxidase	0.580	0.411	0.590	1.3e-124
TAIR|locus:2157032	747	FRO7 "ferric reduction oxidase	0.580	0.406	0.590	1.5e-123
TAIR|locus:2178677	699	FRO4 "ferric reduction oxidase	0.551	0.413	0.280	1.1e-36
TAIR|locus:2025366	704	FRO1 "AT1G01590" [Arabidopsis	0.503	0.375	0.275	3.2e-28
TAIR|locus:2025351	725	FRO2 "AT1G01580" [Arabidopsis	0.547	0.395	0.257	1.6e-26
TAIR|locus:2157697	728	FRO8 "ferric reduction oxidase	0.183	0.131	0.415	1.6e-13
ZFIN|ZDB-GENE-040426-1380	571	cybb "cytochrome b-245, beta p	0.175	0.161	0.262	7.6e-12
UNIPROTKB|F5GWU5	303	CYBB "Cytochrome b-245 heavy c	0.080	0.138	0.386	1.2e-11
TAIR|locus:2168113	886	AT5G60010 [Arabidopsis thalian	0.093	0.055	0.411	2.2e-11
DICTYBASE|DDB_G0291117	1142	noxC "flavocytochrome b large	0.106	0.049	0.396	3.1e-11

TAIR|locus:2157027 FRO6 "ferric reduction oxidase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
 Identities = 183/310 (59%), Positives = 235/310 (75%)

Query:   220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 279
             KIT  VEGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+V
Sbjct:   430 KITTCVEGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVV 489

Query:   280 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YP 338
             WA+K S+ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P
Sbjct:   490 WAIKNSDELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLP 549

Query:   339 VPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLAC 398
               +GC+MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ C
Sbjct:   550 RTNGCSMSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGC 609

Query:   399 MVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIR----KKDTK 454
             MV  VLIFGG V+ FWH WE K+   E   +D +++ N +     +  +++    ++D +
Sbjct:   610 MVASVLIFGGLVVVFWHRWEHKTGEVEANGNDKVDL-NGEETHNPSAAELKGLAIEEDVQ 668

Query:   455 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPI 514
             + T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+
Sbjct:   669 NYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPL 728

Query:   515 FHFHSHSFDL 524
             FHF+SHSFDL
Sbjct:   729 FHFNSHSFDL 738

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2157032 FRO7 "ferric reduction oxidase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 1.5e-123, Sum P(2) = 1.5e-123
 Identities = 183/310 (59%), Positives = 234/310 (75%)

Query:   220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 279
             KIT  VEGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK CLP  VL+V
Sbjct:   439 KITTCVEGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKDCLPGKVLVV 498

Query:   280 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY-P 338
             WA+K S+ELSLLS     SIC FFS KLNLE  IYVTR++EP LE+G +HK +  S+  P
Sbjct:   499 WAIKNSDELSLLSAIDIPSICHFFSKKLNLEIHIYVTRQSEPCLEDGMVHKVVHPSVKTP 558

Query:   339 VPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLAC 398
               +GC+MSVLVGTG+N+WSGLY+I ST+GFI ++ L++I Y+N +NI +WWYKGLLF+ C
Sbjct:   559 WTNGCSMSVLVGTGDNIWSGLYLIISTIGFIAMITLVDIFYINKYNITTWWYKGLLFVVC 618

Query:   399 MVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIR----KKDTK 454
             MV  VLIFGG V+ FWH WE K+   E   +D +++ N +     +  +++    ++D +
Sbjct:   619 MVASVLIFGGLVVVFWHRWEHKTGEVEANGNDKVDL-NGEETHNPSAAELKGLAIEEDVQ 677

Query:   455 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPI 514
             + T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+
Sbjct:   678 NYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPL 737

Query:   515 FHFHSHSFDL 524
             FHF+SHSFDL
Sbjct:   738 FHFNSHSFDL 747

GO:0005506 "iron ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IMP;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

TAIR|locus:2178677 FRO4 "ferric reduction oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 88/314 (28%), Positives = 162/314 (51%)

Query:   221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
             +  S EGPYG        + +LILV+GG GI+PF++++ +++ +     + LP +VL+V 
Sbjct:   394 LEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELISQSQNKSTKLP-DVLLVC 452

Query:   281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY-PV 339
             + K  ++L+ L   +   +      +LNL    Y+TRE + P E  + H+ + +  + P 
Sbjct:   453 SFKHYHDLAFLDLIFPLDMSASDISRLNLRIEAYITREDKKP-ETTDDHRLLQTKWFKPQ 511

Query:   340 PSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGLL 394
             P    +S ++G  N +W G+ ++SS V F++L+ ++   Y+ P +     I+++ Y+GL 
Sbjct:   512 PLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSYRGLW 571

Query:   395 FLACMVGGVLIF-GGTVIGFWHLWERKSSARENYKDD--SIEVDN-AQNVGTMAHNDIRK 450
              +   +G   IF   +V+  W   + K   +E +K+   S+E      + G+  H   R+
Sbjct:   572 DM--FLGSACIFISSSVVFLWRKKQNKEGDKE-FKNQVQSVEFQTPTSSPGSWFHGHERE 628

Query:   451 KDTK------SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSH 504
              ++        +T++ +GS+P+ K+I        G  DVGV+VCGP  ++  VAK I S 
Sbjct:   629 LESVPYQSIVQATSVHFGSKPNLKKILLEAE---GSEDVGVMVCGPRKMRHEVAK-ICSS 684

Query:   505 SLMRECHDPIFHFH 518
              L +  H     F+
Sbjct:   685 GLAKNLHFEAISFN 698

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

TAIR|locus:2025366 FRO1 "AT1G01590" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 79/287 (27%), Positives = 149/287 (51%)

Query:   220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 279
             ++  SVEGPYG      L +E+L++V+GG GI+PF++I+ D+ +  +  K  +P+  LI 
Sbjct:   415 RLAVSVEGPYGPSSTDFLRHESLVMVSGGSGITPFISIVRDLFYMSSTHKCKIPKMTLIC 474

Query:   280 WAVKKSNELSLLSNFYKES-ICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYP 338
              A K S++LS+L      S +    +  ++++   +VTRE +  ++E   ++ +  + + 
Sbjct:   475 -AFKNSSDLSMLDLILPTSGLTTDMASFVDIQIKAFVTREEKTSVKESTHNRNIIKTRHF 533

Query:   339 VPSGCAMSVLVGTGNNVWSGLYVI--SSTVGFIILVALLNILYVNPFNIHS----WWYKG 392
              P+     +    G N W  L  I  SS + FI+++A++   +++P + +S    W YK 
Sbjct:   534 KPNVSDQPISPILGPNSWLCLAAILSSSFMIFIVIIAIITRYHIHPIDQNSEKYTWAYKS 593

Query:   393 LLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKD 452
             L++L   +   ++   T    W+  ++K  A    K+D   VDN   V  +  +  ++  
Sbjct:   594 LIYLVS-ISITVVTTSTAAMLWN--KKKYYA----KNDQY-VDNLSPV--IIESSPQQLI 643

Query:   453 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAK 499
             ++S T+I YG RP+  ++            VG++VCGP  ++  VAK
Sbjct:   644 SQS-TDIHYGERPNLNKLLVGLKGS----SVGILVCGPKKMRQKVAK 685

GO:0000293 "ferric-chelate reductase activity" evidence=ISS;IMP

GO:0005506 "iron ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2025351 FRO2 "AT1G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
 Identities = 82/318 (25%), Positives = 159/318 (50%)

Query:   220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 279
             ++  SVEGPYG      L +E L++V GG GI+PF++++ D++   ++ ++C    + ++
Sbjct:   422 RLAVSVEGPYGPASADFLRHEALVMVCGGSGITPFISVIRDLI-ATSQKETCKIPKITLI 480

Query:   280 WAVKKSNELSLLSNFYKES-ICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYP 338
              A KKS+E+S+L      S +    S  +N++   ++TR+ +   +E +  K  +    P
Sbjct:   481 CAFKKSSEISMLDLVLPLSGLETELSSDINIKIEAFITRDNDAG-DEAKAGKIKTLWFKP 539

Query:   339 VPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGL 393
               S  ++S ++G  + +W G  + SS + F+I++ ++   Y+ P +     I+S   K +
Sbjct:   540 SLSDQSISSILGPNSWLWLGAILASSFLIFMIIIGIITRYYIYPIDHNTNKIYSLTSKTI 599

Query:   394 LFLACMVGGVLIFGGTVIGFWHLWERKSSAR-ENYKDDSIEVDNAQNVGTMA--HNDIRK 450
             +++  +V  V I          LW +K   + E+ +  +++  +  +  T +  +N +R+
Sbjct:   600 IYI--LVISVSIMATCSAAM--LWNKKKYGKVESKQVQNVDRPSPTSSPTSSWGYNSLRE 655

Query:   451 KDTKSS------TNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSH 504
              ++         TN+ +G RP+ K++            VGV+VCGP  ++  VA EI S 
Sbjct:   656 IESTPQESLVQRTNLHFGERPNLKKLLLDVEGS----SVGVLVCGPKKMRQKVA-EICSS 710

Query:   505 SLMRECHDPIFHFHSHSF 522
              L         HF S SF
Sbjct:   711 GLAEN-----LHFESISF 723

GO:0000293 "ferric-chelate reductase activity" evidence=ISS;IDA;IMP

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0015688 "iron chelate transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2157697 FRO8 "ferric reduction oxidase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 42/101 (41%), Positives = 62/101 (61%)

Query:   221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
             I   VEGPYG      L Y+NL LVAGGIGI+PFL+IL ++  + N  KS  P+ V +V+
Sbjct:   404 IIVRVEGPYGPASVDFLRYDNLFLVAGGIGITPFLSILKELASK-NRLKS--PKRVQLVF 460

Query:   281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEP 321
             AV+   +L++L         P ++  LNL+  ++VT+E +P
Sbjct:   461 AVRTFQDLNMLLPIASIIFNPIYN--LNLKLKVFVTQEKKP 499

GO:0005506 "iron ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-040426-1380 cybb "cytochrome b-245, beta polypeptide (chronic granulomatous disease)" [Danio rerio (taxid:7955)]

 Score = 108 (43.1 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
 Identities = 26/99 (26%), Positives = 51/99 (51%)

Query:   224 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHR-INEGKSCLPRNVLIVWAV 282
             +V+GP+G        YE ++LV  GIG++PF ++L  + ++ + E ++   + +   W  
Sbjct:   390 AVDGPFGTASEDVFRYEAVMLVGAGIGVTPFASVLKSVWYKHVQENQNVFTKKIYFYWLC 449

Query:   283 KKSNELSLLSNFYKESICPFFSDKLNLETF----IYVTR 317
              ++      ++   +S+    SDK N+  F    IY+TR
Sbjct:   450 PETQAFEWFADLL-QSLEKQMSDK-NMSDFLSYNIYLTR 486

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F5GWU5 CYBB "Cytochrome b-245 heavy chain" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
 Identities = 17/44 (38%), Positives = 33/44 (75%)

Query:    20 FFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 63
             + F++  ++S L+WHPF+++S+P E  +  S+ I+++G+WTE L
Sbjct:    57 YIFVKCPKVSKLEWHPFTLTSAPEEDFF--SIHIRIVGDWTEGL 98

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=IEA

TAIR|locus:2168113 AT5G60010 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query:    14 RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR 64
             +Y +  + F++  +LS  +WHPFS++S+P  G  + SV I+ LG+WT  LR
Sbjct:   581 KYKSGMYMFVKCPDLSKFEWHPFSITSAP--GDDYLSVHIRALGDWTTELR 629

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016175 "superoxide-generating NADPH oxidase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050664 "oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

DICTYBASE|DDB_G0291117 noxC "flavocytochrome b large subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 113 (44.8 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query:    15 YNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSE 72
             Y    +  + V  +S LQWHPF+++SSPLE K +  V I+V G WT+ L  ++  K +
Sbjct:   830 YKPGQYLLINVPHISKLQWHPFTMTSSPLEDKIY--VHIRVTGNWTKKLFRWLSIKKQ 885

GO:0050661 "NADP binding" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0043020 "NADPH oxidase complex" evidence=ISS

GO:0042554 "superoxide anion generation" evidence=ISS

GO:0030587 "sorocarp development" evidence=IMP

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0020037 "heme binding" evidence=ISS

GO:0016175 "superoxide-generating NADPH oxidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011355001 SubName- Full=Chromosome undetermined scaffold_301, whole genome shotgun sequence; (735 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	524
PLN02631	699	PLN02631, PLN02631, ferric-chelate reductase	2e-27
PLN02292	702	PLN02292, PLN02292, ferric-chelate reductase	7e-27
PLN02844	722	PLN02844, PLN02844, oxidoreductase/ferric-chelate	2e-24
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	6e-18
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-12
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	5e-12
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-12
PLN02844	722	PLN02844, PLN02844, oxidoreductase/ferric-chelate	3e-11
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	4e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-11
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-10
pfam08030	149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	3e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-09
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-09
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-09
pfam08022	103	pfam08022, FAD_binding_8, FAD-binding domain	8e-09
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-07
PLN02292	702	PLN02292, PLN02292, ferric-chelate reductase	3e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	9e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-06
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-06
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	5e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	9e-06
PLN02631	699	PLN02631, PLN02631, ferric-chelate reductase	1e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-05
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-05
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	3e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	4e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-05
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	6e-05
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	6e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	7e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	7e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-05
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-04
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	3e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	5e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	5e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	6e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	7e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	8e-04
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	9e-04
PRK08345	289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	9e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
COG4097	438	COG4097, COG4097, Predicted ferric reductase [Inor	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
TIGR03354	396	TIGR03354, VI_FHA, type VI secretion system FHA do	0.002
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.003
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.003
PRK00054	250	PRK00054, PRK00054, dihydroorotate dehydrogenase e	0.003
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
pfam08030	149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	0.004
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.004
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.004
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	0.004
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	0.004

>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase

 Score =  115 bits (290), Expect = 2e-27
 Identities = 96/323 (29%), Positives = 168/323 (52%), Gaps = 38/323 (11%)

Query: 221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
           +  S EGPYG        + +LILV+GG GI+PF++++ +++ +     + LP +VL+V 
Sbjct: 394 LEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLP-DVLLVC 452

Query: 281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY-PV 339
           + K  ++L+ L   +   I      +LNL    Y+TRE + P E  + H+ + +  + P 
Sbjct: 453 SFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP-ETTDDHRLLQTKWFKPQ 511

Query: 340 PSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGL- 393
           P    +S ++G  N +W G+ ++SS V F++L+ ++   Y+ P +     I+++ Y+GL 
Sbjct: 512 PLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSYRGLW 571

Query: 394 -LFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQ------NVGTMAHN 446
            +FL    G V IF  + I F  LW RK   +E  K+   +V + +      + G+  H 
Sbjct: 572 DMFL----GSVCIFISSSIVF--LW-RKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHG 624

Query: 447 DIRKKDT------KSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKE 500
             R+ ++        +T++ +GS+P+ K+I        G  DVGV+VCGP  ++  VAK 
Sbjct: 625 HERELESVPYQSIVQATSVHFGSKPNLKKILLEAE---GSEDVGVMVCGPRKMRHEVAK- 680

Query: 501 IRSHSLMRECHDPIFHFHSHSFD 523
           I S  L +       HF + SF+
Sbjct: 681 ICSSGLAKN-----LHFEAISFN 698

Length = 699

>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase

 Score =  114 bits (287), Expect = 7e-27
 Identities = 90/319 (28%), Positives = 159/319 (49%), Gaps = 46/319 (14%)

Query: 220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 279
           ++  SVEGPYG      L +E+L++V+GG GI+PF++I+ D+++  +     +P+  LI 
Sbjct: 412 RLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLIC 471

Query: 280 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFI------YVTRETEPPLEEGELHKTMS 333
            A K S++LS+L     + I P    +  L +FI      +VTRE E  ++E   +  + 
Sbjct: 472 -AFKNSSDLSML-----DLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTGNMNII 525

Query: 334 SSIY--PVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPF----NIHS 387
            +++  P  S   +S ++G  + +W    + SS + FII++A++   ++ P     N ++
Sbjct: 526 KTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPIDQNSNKYT 585

Query: 388 WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHND 447
             YK L++L  +   V+      +    LW +K   +++ +    +VDN  +   +  + 
Sbjct: 586 LAYKSLIYLLVISISVVATSTAAM----LWNKKKYYKKSSQ----QVDNVDSPREIESSP 637

Query: 448 IRKKDTKSSTNILYGSRPDFKEIF----GSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRS 503
             ++     TNI YG RP+  ++     GS+        VGV+VCGP  ++  VAK I S
Sbjct: 638 --QQLLVQRTNIHYGERPNLNKLLVGLKGSS--------VGVLVCGPKKMRQKVAK-ICS 686

Query: 504 HSLMRECHDPIFHFHSHSF 522
             L         HF S SF
Sbjct: 687 SGLAEN-----LHFESISF 700

Length = 702

>gnl|CDD|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase

 Score =  107 bits (268), Expect = 2e-24
 Identities = 85/333 (25%), Positives = 146/333 (43%), Gaps = 44/333 (13%)

Query: 221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
           I  ++EGPYG      L Y++L+LVAGGIGI+PFL+IL +I    +  +   P+ V +++
Sbjct: 405 IPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIA-SQSSSRYRFPKRVQLIY 463

Query: 281 AVKKSNELSLLSNFYKESICPFF----SDKLNLETFIYVTRETEPPLEEGELHKTMSS-S 335
            VKKS ++ LL+      I        S++LNL+  ++VT+E +P     EL    S   
Sbjct: 464 VVKKSQDICLLN-----PISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQ 518

Query: 336 IYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYV-----NPFNIHSW-- 388
                + C+   + G  + +W    V  +++ F++ +  LN +++     +   +     
Sbjct: 519 TVNFSTKCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAAS 578

Query: 389 ------------WYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDN 436
                       W   LL +   +  +     T +     W R    ++     S +   
Sbjct: 579 GEMKTAKEKTPSWVVDLLLIVSFIIAITC--STFVAIILRWRRL---KKEIPRVSQKQGI 633

Query: 437 AQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSS 496
               G+M     ++        I +G RP+F++IF    K+    D+GV+VCGP +++ S
Sbjct: 634 KPEEGSM----EKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKES 689

Query: 497 VAKEIRSHSL-----MRECHDPIFHFHSHSFDL 524
           VA   R  S              F FHS +F L
Sbjct: 690 VASMCRLKSQCFNVGDDGKRKMYFSFHSLNFTL 722

Length = 722

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 82.4 bits (204), Expect = 6e-18
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 217 PPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 276
               +   VEGPYG      L Y+N++LVAGG GI+  L IL D+L R +  K+   R V
Sbjct: 84  GGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSS--KTSRTRRV 141

Query: 277 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR 317
            +VW V+   +L     ++ + +      +++ E  IYVTR
Sbjct: 142 KLVWVVRDREDLE----WFLDELRAAQELEVDGEIEIYVTR 178

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.4 bits (172), Expect = 2e-12
 Identities = 50/168 (29%), Positives = 58/168 (34%), Gaps = 33/168 (19%)

Query: 79   PPPPVPPPEGHPPPVHP----PQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 134
            PPPP P PE  P  +      P GP            A   S A P    P P   P G 
Sbjct: 2701 PPPPPPTPEPAPHALVSATPLPPGPA----------AARQASPALP--AAPAPPAVPAGP 2748

Query: 135  PPPGPPLQEEGPP----PQGPHPPVPPPQGPPPPLPPPKGNLMYENL------------- 177
              PG P +   PP    P  P PP  P  GPP  L  P    + E+              
Sbjct: 2749 ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808

Query: 178  IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 225
              V    +   P   P  P+PPP  + P  PPP   P  P   +  SV
Sbjct: 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856

Length = 3151

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 19/113 (16%)

Query: 8   PIKTYLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDY 66
           P     ++      +L    L S+ Q HPF+++SSP + +   S++I+    +T  L   
Sbjct: 18  PKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRK 77

Query: 67  ILSKSESDSQVGPPPPV----PPPEGHPPPVHPPQGPVRNLMYENLILVAGGI 115
            L         G    V    P        +           Y+N++LVAGG 
Sbjct: 78  ALKSPGG----GVSLKVLVEGPYGSSSEDLLS----------YDNVLLVAGGS 116

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 37/167 (22%), Positives = 47/167 (28%), Gaps = 14/167 (8%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
             P P P P   P     PQ P + ++    +       +  P +  P     PQG PP 
Sbjct: 128 TAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPR 187

Query: 138 GPPLQEEGPPPQGP----HPPVPPPQGPPPPLPPPKGNLMYE--------NLIVVAGGIS 185
                ++GPP Q P     P   P Q  P    P       +                  
Sbjct: 188 QAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ 247

Query: 186 ETEPQVGPPPPVPPPQGSPPQRPPPSRH--PLLPPTKITASVEGPYG 230
                   PPP P P     Q P P     P   PT      +G   
Sbjct: 248 FPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNA 294

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 68.0 bits (166), Expect = 8e-12
 Identities = 45/154 (29%), Positives = 52/154 (33%), Gaps = 22/154 (14%)

Query: 79   PPPPVPPP-EGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
            P  P+PPP    P    PP GP    +     +  GG     P    P   P    A P 
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP----AAPA 2879

Query: 138  GPPLQE-EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPP 196
             PP++    P           P   P   P P+               +   PQ  P PP
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQ---------------APPPPQPQPQPP 2924

Query: 197  VPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 230
             PPPQ  PP  PPP   P L PT   A    P G
Sbjct: 2925 -PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957

Length = 3151

>gnl|CDD|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 10/105 (9%)

Query: 13  LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSE 72
           L+Y   S  F+++  +S  QWHPFS++SS     +  SV+IK  G WT +L + I ++ +
Sbjct: 337 LKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELD 396

Query: 73  SDSQVGPPPPVPPPEGHPPPVHPPQGP--VRNLMYENLILVAGGI 115
           S++      PV         +  P GP  V  L Y++L+LVAGGI
Sbjct: 397 SETNQMNCIPV--------AIEGPYGPASVDFLRYDSLLLVAGGI 433

Length = 722

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 224 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK 283
            V GP G           ++L+AGGIGI+PF ++L  +              + +++  +
Sbjct: 82  EVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKP------GGEITLLYGAR 135

Query: 284 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEG 326
              +L      + + +     +  N    + ++RE+E  L  G
Sbjct: 136 TPADL-----LFLDELEELAKEGPNFRLVLALSRESEAKLGPG 173

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 65.0 bits (158), Expect = 7e-11
 Identities = 47/145 (32%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 80   PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
            PP   P      P  P + PVR L    +       S A P   P  P  PPQ   PP P
Sbjct: 2866 PPSRSPA---AKPAAPARPPVRRLARPAV--SRSTESFALP---PDQPERPPQPQAPPPP 2917

Query: 140  PLQEEGPPPQGPHPPVPPPQGPPPPLPP---------PKGNLMYENLIVVAGGISETEPQ 190
              Q + PPP  P PP PPP  P PPL P         P G +    L  +  G     P+
Sbjct: 2918 QPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV-PR 2976

Query: 191  VGPPPPVPPPQGSPPQRPPPSRHPL 215
               P P P  +      PP + H L
Sbjct: 2977 FRVPQPAPSREAPASSTPPLTGHSL 3001

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 35/167 (20%), Positives = 44/167 (26%), Gaps = 19/167 (11%)

Query: 76  QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 135
           Q  P  P PP +  P  + P Q                   + +P    P    P     
Sbjct: 167 QQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQA 226

Query: 136 PPGPPLQEEGPPPQGPHPPVPPP----QGPPPPLPPPKGNLMYENLIVVAGGISETEPQV 191
           P  PPL  + P    P      P    Q PPPP  PP+                +     
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQ-------------QQPPQPQ 273

Query: 192 GPPPPVPPPQGSP--PQRPPPSRHPLLPPTKITASVEGPYGHEVPYH 236
             PPP   P   P  PQ       P   P  +    +       P  
Sbjct: 274 AQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQF 320

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 239 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 298
           YEN++LVAGGIGI+PF++IL D+ ++    K+   + +   WAV+  + L    +   E 
Sbjct: 1   YENVLLVAGGIGITPFISILKDLGNKS---KALKTKKIKFYWAVRDLSSLEWFKDVLNEL 57

Query: 299 ICPFFSDKLNLETFIYVTRETE 320
                 +  N+E  IY+T E E
Sbjct: 58  EE--LKELGNIEIHIYLTGEYE 77

Length = 149

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 44/165 (26%), Positives = 48/165 (29%), Gaps = 26/165 (15%)

Query: 68   LSKSESDSQVGPPPPVPPPEGHPPP---VHPPQGPVRNLMYENLILVAGGISEANPHVGP 124
            L +  SD    PPPP+PP      P   V PP+   R          A       P   P
Sbjct: 2540 LEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRP------SEPAVTSRARRPDA-P 2592

Query: 125  PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 184
            P    P       G P    GP P  P PP      PPPP P P  N    +        
Sbjct: 2593 PQSARPRAPVDDRGDP---RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP 2649

Query: 185  SETEPQVGPP----------PPVPPPQGSPPQRPPPSRHPLLPPT 219
                    P                   SPPQRP   R     PT
Sbjct: 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRP---RRRAARPT 2691

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 60.1 bits (145), Expect = 2e-09
 Identities = 36/164 (21%), Positives = 45/164 (27%), Gaps = 35/164 (21%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
           P P+ PP   P     P                     A P    P    PP  AP    
Sbjct: 701 PTPMRPPAAPPGRAQRPAA---------------ATGRARPPAAAPGRARPPAAAPGRAR 745

Query: 140 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 199
           P       P        PP   P    PP             G  +   P   PP P   
Sbjct: 746 P-------PAAAPGRARPPAAAPGRARPPAA---------APGAPTPQPPPQAPPAPQQR 789

Query: 200 PQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLI 243
           P+G+P  +PPP       PT +        G + P   +   L+
Sbjct: 790 PRGAPTPQPPPQ----AGPTSMQLMPRAAPGQQGPTKQILRQLL 829

Length = 991

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 35/146 (23%), Positives = 43/146 (29%), Gaps = 36/146 (24%)

Query: 75  SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 134
           +   PP P   P+  PP   P    +   M                   PP P  PPQ  
Sbjct: 226 APAQPPLPPQLPQQPPPLQQPQFPGLSQQM-------------------PPPPPQPPQQQ 266

Query: 135 PPPGPPLQEEGPPPQGPHPPVP-PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 193
             P  P  +  PPPQ    P P  PQG   PLPPP+                +  P V  
Sbjct: 267 QQPPQPQAQ--PPPQNQPTPHPGLPQGQNAPLPPPQQ--------------PQLLPLVQQ 310

Query: 194 PPPVPPPQGSPPQRPPPSRHPLLPPT 219
           P           Q    S+      +
Sbjct: 311 PQGQQRGPQFREQLVQLSQQQREALS 336

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|219702 pfam08022, FAD_binding_8, FAD-binding domain

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 10 KTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILS 69
          K   +Y    + F+    +S+LQ HPF+++S+P + K   SV IK  G WT+ L  Y+ S
Sbjct: 25 KKPFKYKPGQYIFINFPPISFLQSHPFTITSAPEDDKL--SVHIKAKGGWTKKLAKYLSS 82

Query: 70 KSESD 74
            E++
Sbjct: 83 SPENN 87

Length = 103

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 36/143 (25%), Positives = 40/143 (27%), Gaps = 29/143 (20%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
            P P   P   P P   PQ P                        PP P  PPQ    P 
Sbjct: 220 LPAPSQAPAQPPLPPQLPQQPPPL---------QQPQFPGLSQQMPPPPPQPPQQQQQPP 270

Query: 139 PPLQEEGPPPQGPHPPVP-PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 197
            P  +  PPPQ    P P  PQG   PLPPP+                +  P V  P   
Sbjct: 271 QPQAQ--PPPQNQPTPHPGLPQGQNAPLPPPQQ--------------PQLLPLVQQPQGQ 314

Query: 198 PP---PQGSPPQRPPPSRHPLLP 217
                 +    Q     R  L  
Sbjct: 315 QRGPQFREQLVQLSQQQREALSQ 337

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 24/138 (17%), Positives = 27/138 (19%), Gaps = 35/138 (25%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP-- 135
             P   P P    P       P                + A      P P P P      
Sbjct: 404 AAPAAAPAPAAAAPAAAAAPAP----------------AAAPQPAPAPAPAPAPPSPAGN 447

Query: 136 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 195
            P        P       P P P   P P   P                    P   P P
Sbjct: 448 APAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP-----------------APAPPAAPAP 490

Query: 196 PVPPPQGSPPQRPPPSRH 213
              P   + P  P  +  
Sbjct: 491 AAAPAAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 27/144 (18%), Positives = 30/144 (20%), Gaps = 30/144 (20%)

Query: 75  SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 134
           +              P     P               A   + A      P P P P  A
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAP----------AAAAAPAPAAAPQPAPAPAPAPA 440

Query: 135 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 194
           PP        G  P  P    P  Q  P P   P                         P
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP--------------------EPTAAP 480

Query: 195 PPVPPPQGSPPQRPPPSRHPLLPP 218
            P PP   +P   P     P  P 
Sbjct: 481 APAPPAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 30/137 (21%), Positives = 33/137 (24%), Gaps = 36/137 (26%)

Query: 74  DSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 133
             Q    PP    +   P   PP+  V                   P    P PV  P  
Sbjct: 87  SPQHQYQPPYASAQPRQPVQQPPEAQVPPQ------------HAPRPAQPAPQPVQQPAY 134

Query: 134 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 193
            P P  PLQ    P      P P P    P                        +    P
Sbjct: 135 QPQPEQPLQ---QPVSPQVAPAPQPVHSAPQPA---------------------QQAFQP 170

Query: 194 PPPVPPPQGSPPQRPPP 210
             PV  PQ  P   P P
Sbjct: 171 AEPVAAPQPEPVAEPAP 187

Length = 333

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 42/166 (25%), Positives = 46/166 (27%), Gaps = 11/166 (6%)

Query: 78   GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
            GPP  +  P            P      +    V    +   P   P  P+PPP  A P 
Sbjct: 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837

Query: 138  GPPLQEEGPPPQ-------GPHPPVP--PPQGPPPPLPPPKGNLMYENLIVVAGGISETE 188
             PP     PPP         P   V   PP   P   P          L   A   S TE
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRS-TE 2896

Query: 189  PQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 234
                PP   P     P   PPP   P  PP         P     P
Sbjct: 2897 SFALPPDQ-PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 42/151 (27%), Positives = 45/151 (29%), Gaps = 28/151 (18%)

Query: 79   PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
            P PP  P  G P  +  P              VA           P  P  PP     P 
Sbjct: 2769 PAPPAAPAAGPPRRLTRPA-------------VASLSESRESLPSPWDPADPPAAVLAPA 2815

Query: 139  PPLQEEGPPPQGPHPPVPPP----QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 194
              L    PP   P  P+PPP       PPP P P    +     V  GG     P    P
Sbjct: 2816 AAL----PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

Query: 195  PPVPPPQGSPP----QRPPPSRHPL---LPP 218
               P     PP     RP  SR      LPP
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPP 2902

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 32/166 (19%), Positives = 40/166 (24%), Gaps = 7/166 (4%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
               P        P V  P+   +++   +      G         P  P P P  A P 
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 197
            P       P   P    P  Q   P   PP+           A   S       P PP 
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQA-------AQGASAPSPAADDPVPLPPE 744

Query: 198 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLI 243
           P     P   P     P  P      +   P         M E+  
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDA 790

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 19/131 (14%), Positives = 23/131 (17%), Gaps = 20/131 (15%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
            P    P   P        P                + A          PP    P P  
Sbjct: 383 RPEAAAPAAAPVAQ-AAAAPAP--------------AAAPAAAASAPAAPPAAAPPAPVA 427

Query: 140 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 199
                 P       P      P PP          E + +      E       P P   
Sbjct: 428 APAAAAPAAAPAAAPAAVALAPAPPAQAAP-----ETVAIPVRVAPEPAVASAAPAPAAA 482

Query: 200 PQGSPPQRPPP 210
           P  +       
Sbjct: 483 PAAARLTPTEE 493

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 30/127 (23%), Positives = 41/127 (32%), Gaps = 3/127 (2%)

Query: 46  KYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHP---PPVHPPQGPVRN 102
           K+ ++ + K L E  +      L + + D+ V          G         P   P  +
Sbjct: 132 KWKAARIHKALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSS 191

Query: 103 LMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP 162
               +        S  +    PP P       PPP P       PP GP  P PPP    
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251

Query: 163 PPLPPPK 169
           PPL   K
Sbjct: 252 PPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 46/172 (26%), Positives = 58/172 (33%), Gaps = 42/172 (24%)

Query: 79   PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISE-ANPHVG---PPLP------- 127
            P P  PP      P   P  PV   ++  ++    G+ E A+   G   PPLP       
Sbjct: 2504 PDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAA 2563

Query: 128  ----VPPPQGAP-PPGPPLQEE----GPPPQGPHPPVP-----PPQGPPPPLPPPKGNLM 173
                VPPP+ AP P  P +         PPQ   P  P      P+GP PP P P     
Sbjct: 2564 PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP---- 2619

Query: 174  YENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 225
                               PPPP P P  + P   PP   P     +   + 
Sbjct: 2620 -------------DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 31/161 (19%), Positives = 39/161 (24%), Gaps = 20/161 (12%)

Query: 75   SQVGPPPPVPPPEG-HPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 133
                      PP+        P  G + +L                    PP P P P+ 
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSL------------------ADPPPPPPTPEP 2710

Query: 134  APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 193
            AP          P P       P     P P   P G          A   +   P   P
Sbjct: 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPP-AP 2769

Query: 194  PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 234
             PP  P  G P +   P+   L    +   S   P      
Sbjct: 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA 2810

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 33/158 (20%), Positives = 41/158 (25%), Gaps = 18/158 (11%)

Query: 79   PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
              P  PPP   P    P   P   +               +            Q + PP 
Sbjct: 2622 HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681

Query: 139  PPLQEEGPPPQGPHPPV--PPPQGPPP-PLPPPKGNLMYENLIVVAGGISETEPQVGP-P 194
             P +    P  G    +  PPP  P P P P    +         A   +       P P
Sbjct: 2682 RPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

Query: 195  PPVP--------------PPQGSPPQRPPPSRHPLLPP 218
            P VP              PP  + P  P P   P   P
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 19/103 (18%), Positives = 20/103 (19%), Gaps = 1/103 (0%)

Query: 111 VAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ-EEGPPPQGPHPPVPPPQGPPPPLPPPK 169
           VAGG               P     P          P P     P P P   P P  P  
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 170 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 212
                             +P   P     P     P  P    
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA 489

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 20/145 (13%), Positives = 27/145 (18%), Gaps = 36/145 (24%)

Query: 69  SKSESDSQVGPPPPVPPPEGHPPPV-HPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 127
            K+ +  +   P   P  +    P                                    
Sbjct: 378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAP----------------------AAAASAPA 415

Query: 128 VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 187
            PP    P P        P       P      P PP                       
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP-------------ETVAI 462

Query: 188 EPQVGPPPPVPPPQGSPPQRPPPSR 212
             +V P P V     +P   P  +R
Sbjct: 463 PVRVAPEPAVASAAPAPAAAPAAAR 487

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/151 (17%), Positives = 31/151 (20%), Gaps = 1/151 (0%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGP-PLPVPPPQGAPPP 137
           P  P   P            P R       +  A   S   P   P P P P    A   
Sbjct: 403 PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAA 462

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 197
            P      P                 P P       +E L       +  +P   P   V
Sbjct: 463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

Query: 198 PPPQGSPPQRPPPSRHPLLPPTKITASVEGP 228
                 P    P      L P    A     
Sbjct: 523 AESIPDPATADPDDAFETLAPAPAAAPAPRA 553

Length = 700

>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 17/105 (16%)

Query: 13  LRYNALSFFFLQVRELSWLQWHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDYILSKS 71
           L Y+  S  F+ +  +S LQWHPF++ SSS LE +   SV+IK  G+W+  L   + S  
Sbjct: 350 LMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPE-KLSVMIKSQGKWSTKLYHMLSSSD 408

Query: 72  ESDSQVGPPPPVPPPEGHPPPVHPPQGPVRN--LMYENLILVAGG 114
           + D                  V  P GP     L +E+L++V+GG
Sbjct: 409 QIDRLA-------------VSVEGPYGPASTDFLRHESLVMVSGG 440

Length = 702

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 31/147 (21%), Positives = 36/147 (24%), Gaps = 10/147 (6%)

Query: 77  VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPP 136
              PP  PPP          +         + +  A    E +P    P    PP   PP
Sbjct: 64  RFEPPTGPPPGP-GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP 122

Query: 137 PGPPLQEEGP------PPQGPHPPVPPPQGPPPPLPPPK---GNLMYENLIVVAGGISET 187
           P  P     P       P G   P P    P     P              +      ET
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182

Query: 188 EPQVGPPPPVPPPQGSPPQRPPPSRHP 214
                 PP  PPP   P    P     
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRR 209

Length = 1352

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.3 bits (123), Expect = 9e-07
 Identities = 23/116 (19%), Positives = 26/116 (22%), Gaps = 21/116 (18%)

Query: 113 GGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 172
           G      P    P   P P  A    P   +     Q   P  P     P   PP     
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ---PSAPQSATQPAGTPPT---- 426

Query: 173 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 228
                      +S          PV PP  +P    P              S  GP
Sbjct: 427 -----------VSV---DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGP 468

Length = 614

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 30/150 (20%), Positives = 37/150 (24%), Gaps = 17/150 (11%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
                P   G   P  PP  P            A     A     P  P P P   PP G
Sbjct: 665 GGDGWPAKAGGAAPAAPPPAP------------APAAPAAPAGAAPAQPAPAPAATPPAG 712

Query: 139 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 198
                   PPQ       P      P+P P      E         +  +P   P P   
Sbjct: 713 QADDPAAQPPQAAQGASAPSPAADDPVPLP-----PEPDDPPDPAGAPAQPPPPPAPAPA 767

Query: 199 PPQGSPPQRPPPSRHPLLPPTKITASVEGP 228
               + P   PPS    +      +  +  
Sbjct: 768 AAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 19/97 (19%), Positives = 22/97 (22%)

Query: 72  ESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP 131
            + +   P P   P      P  PP       +             A P      P PP 
Sbjct: 394 VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453

Query: 132 QGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 168
           Q AP          P P        P   P      P
Sbjct: 454 QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 29/141 (20%), Positives = 37/141 (26%), Gaps = 25/141 (17%)

Query: 73  SDSQVGPPPPVPPPEGHPP---PVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP 129
           S         +P P+ +           GPV   M       A     +    G P+  P
Sbjct: 633 SGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGM------PAHTARPSRVARGDPVR-P 685

Query: 130 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEP 189
               A    P     G PP G     PPP  P    P P G+               +  
Sbjct: 686 TAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGS---------------SLI 730

Query: 190 QVGPPPPVPPPQGSPPQRPPP 210
                PP P P G+       
Sbjct: 731 ASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 23/98 (23%), Positives = 25/98 (25%), Gaps = 13/98 (13%)

Query: 71  SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 130
           S+  S     P  P P   P        P                S       PP P  P
Sbjct: 185 SDPPSSSPGVPSFPSPPEDPSSPSDSSLP-------------PAPSSFQSDTPPPSPESP 231

Query: 131 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 168
              +PPPGP      P  Q P      P  P     P 
Sbjct: 232 TNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 32/166 (19%), Positives = 39/166 (23%), Gaps = 19/166 (11%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVA---------GGISEANPHVGPPLPVP 129
            PP  P                          +A          G + A        P  
Sbjct: 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAA 460

Query: 130 ---PPQGAPPPGPPLQEEGPPPQGPHP-PVPPPQGPPP--PLPP-PKGNLMYENLIVVAG 182
              P    P P        P    P   P P    PPP   LPP        +     AG
Sbjct: 461 AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAG 520

Query: 183 GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 228
            ++E+ P    P    P        P P+  P       T  V  P
Sbjct: 521 WVAESIPD---PATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 24/112 (21%), Positives = 30/112 (26%), Gaps = 16/112 (14%)

Query: 117 EANPHVGPPLPVPPP--QGAPPPGPPLQEEGPPPQG-----PHPPVPPPQGPPPPLPPPK 169
           +A+   GP   + P   Q A  P P       P          P  P     P   PP  
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427

Query: 170 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLL-PPTK 220
                              P    P  V P Q    ++ P S+   L P T 
Sbjct: 428 SVDP--------PAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTL 471

Length = 614

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 35/169 (20%), Positives = 42/169 (24%), Gaps = 20/169 (11%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
           PP   P    P      Q P  +             S+  P     +   P Q  P   P
Sbjct: 74  PPAPAPQSPQPDQQQQSQAPPSHQYP----------SQLPPQ---QVQSVPQQPTPQQEP 120

Query: 140 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV-- 197
                  P   P       Q  PPP  P +                  + Q  P      
Sbjct: 121 YYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLY 180

Query: 198 -----PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYEN 241
                  PQ  PP  P PS   + PP       +  YG   P   MY  
Sbjct: 181 PEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG 229

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 30/177 (16%), Positives = 34/177 (19%), Gaps = 30/177 (16%)

Query: 63  LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV 122
           LR       +S    GP      P   P P                           P  
Sbjct: 358 LRMLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAA----------------APAPAA 401

Query: 123 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQ-----GPPPPLPPPKGNLMYENL 177
            P  P   P  A                P       Q         P P P         
Sbjct: 402 PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA-------- 453

Query: 178 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 234
              A   +   P    P PV     + P R  P+  P           E P     P
Sbjct: 454 -PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 22/111 (19%), Positives = 25/111 (22%), Gaps = 13/111 (11%)

Query: 120 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV 179
                      P  + P  P       PP+ P  P      P P                
Sbjct: 176 DADPASASPSDPPSSSPGVPSFP---SPPEDPSSPSDSSLPPAPSSFQSDT--------- 223

Query: 180 VAGGISETEPQVGPPPPVPPPQGSPPQRPPPS-RHPLLPPTKITASVEGPY 229
                        PP P  PP     Q PP S   P  P    T +  G  
Sbjct: 224 PPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 26/147 (17%), Positives = 34/147 (23%), Gaps = 31/147 (21%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
           P   P      P    P+                                P + AP   P
Sbjct: 454 PAAAPAA-AARPAAAGPRPV-----------------------AAAAAAAPARAAPAAAP 489

Query: 140 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG---NLMYENLIVVAGGISETEPQVGPPPP 196
              ++ PPP    PP      P  P   P G     + +          ET        P
Sbjct: 490 APADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549

Query: 197 VPPPQGSP----PQRPPPSRHPLLPPT 219
            P    +       RPP +    LP  
Sbjct: 550 APRAAAATEPVVAPRPPRASASGLPDM 576

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 25/110 (22%), Positives = 29/110 (26%), Gaps = 22/110 (20%)

Query: 125 PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 184
           P+P P P       P      P P     P        PP  P                 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTR--PKAAAAANIPPKEP----------------- 402

Query: 185 SETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 234
                +   PPPVPP   +PP    P   P L    I    +  Y    P
Sbjct: 403 ---VRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 222 TASVEGPYGHEVPYHLMY--ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 279
             +VEGPYG    +         I +AGGIGI+PFLA+L   L    +      R V + 
Sbjct: 79  RVTVEGPYGR---FTFDDRRARQIWIAGGIGITPFLALLEA-LAARGD-----ARPVTLF 129

Query: 280 WAVKKSNELSLL 291
           + V+   +   L
Sbjct: 130 YCVRDPEDAVFL 141

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 37/203 (18%), Positives = 50/203 (24%), Gaps = 40/203 (19%)

Query: 68  LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVR-------------------------- 101
           LS  E  ++    PP  PP   PP    P+ P R                          
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235

Query: 102 ---NLMYENLILVAGGISEA-NPHVGP-PLPVPPPQGAPP----PGPPLQEEGPPPQGPH 152
              +   E+     G  +E   P   P  LP    + +        P        P+   
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERS 295

Query: 153 PPVPPPQGPPPPLPPPKGNLMYENLI--VVAGGISETEPQVGPPPPVPPPQGSP---PQR 207
           P   P      P P         +      +   S +          P P  S    P R
Sbjct: 296 PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355

Query: 208 PPPSRHPLLPPTKITASVEGPYG 230
           PPP   P  P  +   S      
Sbjct: 356 PPPPADPSSPRKRPRPSRAPSSP 378

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 26/157 (16%), Positives = 32/157 (20%), Gaps = 24/157 (15%)

Query: 76  QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 135
            VGP P     EG P P                                  P  P   A 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPE-----------------------EAARPAAPAAPAA 623

Query: 136 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 195
           P  P        P        P    P   P         +        +       PPP
Sbjct: 624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683

Query: 196 PVPPPQGSPPQRPPPSR-HPLLPPTKITASVEGPYGH 231
              P   + P    P++  P    T      + P   
Sbjct: 684 APAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720

Length = 824

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 25/90 (27%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 76  QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 135
               PPP     G PP          +     L  V+      NP +  P P  P   AP
Sbjct: 184 GAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVS-----FNPFLPGPSPAQPS--AP 236

Query: 136 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPL 165
           P   P     P  Q   PP  PP  P  P+
Sbjct: 237 PASIPAPPIPPVIQYVAPPPVPPPQPIIPI 266

Length = 582

>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 13  LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSE 72
           L Y   S  FL V  +S LQWHPF+++SS    K   SV+I+  G WT+ L  ++ S  +
Sbjct: 333 LHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSID 392

Query: 73  S--DSQVGPPPP 82
           S   S  GP  P
Sbjct: 393 SLEVSTEGPYGP 404

Length = 699

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 30/140 (21%), Positives = 40/140 (28%), Gaps = 12/140 (8%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
             P P  PP+    P  P    + ++ Y+         S    +   P+   P    PPP
Sbjct: 647 VFPTPHQPPQVEITPYKPTWTQIGHIPYQP--------SPTGANTMLPIQWAPGTMQPPP 698

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 197
             P      PP  P      P        PP            A       P    P   
Sbjct: 699 RAP--TPMRPPAAPPGRAQRPAAATGRARPPAAA--PGRARPPAAAPGRARPPAAAPGRA 754

Query: 198 PPPQGSPPQRPPPSRHPLLP 217
            PP  +P +  PP+  P  P
Sbjct: 755 RPPAAAPGRARPPAAAPGAP 774

Length = 991

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 21/108 (19%)

Query: 227 GPYGH----EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 282
            P G     EVP     + L L+A G GI+PFL++L D+       K      +++V  V
Sbjct: 88  KPTGFLTLDEVP---PGKRLWLLATGTGIAPFLSMLRDLEIWERFDK------IVLVHGV 138

Query: 283 KKSNELSLLSNF--YKESICPFFSDKLNLETFIYVTRETEPPLEEGEL 328
           + + EL+         +                 V+RE E     G +
Sbjct: 139 RYAEELAYQDEIEALAKQYNG------KFRYVPIVSREKENGALTGRI 180

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 21/122 (17%), Positives = 25/122 (20%), Gaps = 4/122 (3%)

Query: 114 GISEANPHVGPPLPVPPPQGA-PPPGPPLQEEGPPPQGPH--PPVPPPQGPPPPLPPPKG 170
            +  A     P    P    A P   P      P           P P   P P P P  
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443

Query: 171 NLMYENLIVVAGGISETEPQVGP-PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPY 229
                             P   P P P   P+ +    P P   P         +     
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 230 GH 231
             
Sbjct: 504 AG 505

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 17/97 (17%), Positives = 21/97 (21%), Gaps = 9/97 (9%)

Query: 139 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 198
           P    E   P     P  P    P   P  +           A   +         P  P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQA--------AAAPAPAAAPAAAASAPAAP 417

Query: 199 PPQGSPPQR-PPPSRHPLLPPTKITASVEGPYGHEVP 234
           P    P     P +  P   P    A+V         
Sbjct: 418 PAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Length = 618

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 28/99 (28%), Positives = 31/99 (31%), Gaps = 17/99 (17%)

Query: 112 AGGISEANPHVGPPLPVPPPQGAPP-PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 170
           A  ++ A P      P PPP         P     PPP  P  P  P    P   PPP  
Sbjct: 26  ASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPP 85

Query: 171 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPP 209
                            +P   PPPPV P    PP   P
Sbjct: 86  ----------------ADPNAPPPPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 27/153 (17%), Positives = 32/153 (20%), Gaps = 38/153 (24%)

Query: 69  SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 128
           S +        PPP  PP   PPP   P                  +SE    VG P P 
Sbjct: 105 SPTPPGPSSPDPPPPTPPPASPPPSPAP-----------------DLSEMLRPVGSPGPP 147

Query: 129 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP--PPLPPPKGNLMYENLIVVAGGISE 186
           P          P              +P             P                  
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP----------------- 190

Query: 187 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 219
              +  P  P       PP+R  P       P 
Sbjct: 191 --AEPPPSTPPAAASPRPPRRSSPISASASSPA 221

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 24/123 (19%), Positives = 32/123 (26%), Gaps = 31/123 (25%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
           P P P P         P              V    + +        P        PP  
Sbjct: 362 PVPAPQPAKPTAAAPSP--------------VRPTPAPSTR------PKAAAAANIPPKE 401

Query: 140 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 199
           P++E   PP  P  PV PP    P   P            +       + +    PP PP
Sbjct: 402 PVRETATPPPVPPRPVAPPVPHTPESAPK-----------LTRAAIPVDEKPKYTPPAPP 450

Query: 200 PQG 202
            + 
Sbjct: 451 KEE 453

Length = 585

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 114 GISEANPHVGPPLPVPPPQ-GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 172
           G+ +      PP P      G PPP PP + E   P  P  P  PP  P P  P      
Sbjct: 49  GLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108

Query: 173 M 173
           +
Sbjct: 109 V 109

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 25/124 (20%), Positives = 33/124 (26%), Gaps = 7/124 (5%)

Query: 87  EGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 146
             HP     P    R+  +       G   +       P+P   P  AP P P      P
Sbjct: 372 RHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAP--P 429

Query: 147 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQV----GPPPPVPPPQG 202
           PP  P  P   P     P PPP+                +   +         P  PP  
Sbjct: 430 PPATP-LPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGA 488

Query: 203 SPPQ 206
              +
Sbjct: 489 DLAE 492

Length = 3151

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 22/117 (18%)

Query: 1   MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWT 60
                + P    L + A  F FL+     W + HPF++SS+P +        IK LG++T
Sbjct: 9   TTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAP-DPDGRLRFTIKALGDYT 67

Query: 61  ENLRDYILSKSESDSQVGPPPPVPPPEGH--PPPVHPPQGPVRNLMYENLILVAGGI 115
             L + +        + G    V  P G          Q           I +AGGI
Sbjct: 68  RRLAERL--------KPGTRVTVEGPYGRFTFDDRRARQ-----------IWIAGGI 105

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 28/89 (31%), Positives = 29/89 (32%), Gaps = 26/89 (29%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
           PPP PP      P      P                        PP P  PP  AP P  
Sbjct: 43  PPPPPPSTAAAAPAPAAPPP------------------------PPPPAAPP--APQPDD 76

Query: 140 PLQEEGPPPQGPHPPVPPPQGPPPPLPPP 168
           P     PPP  P+ P PPP  P  P PP 
Sbjct: 77  PNAAPPPPPADPNAPPPPPVDPNAPPPPA 105

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (110), Expect = 4e-05
 Identities = 22/101 (21%), Positives = 25/101 (24%), Gaps = 2/101 (1%)

Query: 120 PHVGPPLPVPPPQGAPPPG--PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 177
           P    P P  PPQ A P                P  P  PP     P   P   L     
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 178 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 218
            ++A        Q         P  +   RP  S    L  
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLAS 461

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 27/104 (25%), Positives = 31/104 (29%), Gaps = 16/104 (15%)

Query: 108 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 167
           L L +   S +N    PP P   P   P P PPL +       P PP PPP         
Sbjct: 508 LNLESQSGSASNTAKTPPPPQKSPP-PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNA 566

Query: 168 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS 211
           P                        PPP    P  SP +   P 
Sbjct: 567 P---------------AQIPADSSPPPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 24/125 (19%), Positives = 28/125 (22%), Gaps = 27/125 (21%)

Query: 127 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVP----PPQGPPPPLPPPKGNLMYENLIVVAG 182
           P  P   AP   P  Q        P          P  PP   PP               
Sbjct: 381 PARPEAAAPAAAPVAQA--AAAPAPAAAPAAAASAPAAPPAAAPPAPVA---APAAAAPA 435

Query: 183 GISETEPQVGPPPPVPPPQ----------------GSPPQRPPPSRHPLLPPTKITASVE 226
                 P      P PP Q                      P P+  P     ++T + E
Sbjct: 436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP--AAARLTPTEE 493

Query: 227 GPYGH 231
           G   H
Sbjct: 494 GDVWH 498

Length = 618

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 33/173 (19%), Positives = 43/173 (24%), Gaps = 26/173 (15%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP-- 137
           PPP P       P    +        +        +           P P P  AP P  
Sbjct: 442 PPPPPRARPGSTP-ACARRARAQRARDAGPEYVDPLGALRRLPAGAAPPPEPAAAPSPAT 500

Query: 138 -------GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 190
                  GPP      PP+        P   PP   PP+                  EP 
Sbjct: 501 YYTRMGGGPPR----LPPRNRATETLRPDWGPPAAAPPEQM-----------EDPYLEPD 545

Query: 191 VGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS-VEGPYGHEVPYHLMYENL 242
                       +    P  +  P   P     S  E P   E+P   +Y+N 
Sbjct: 546 DDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIPTPRVYQNP 598

Length = 694

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 34/148 (22%), Positives = 42/148 (28%), Gaps = 27/148 (18%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
           PP V P +  PP   PP              V    S     +  P   P     P  GP
Sbjct: 552 PPKVSPSDRGPPKASPP--------------VMAPPSTGPRVMATPSTGPRDMAPPSTGP 597

Query: 140 PLQE---EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG----------ISE 186
             Q    +GPP  GPH   PP   P    P      + E L+  + G             
Sbjct: 598 RQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMRAGR 657

Query: 187 TEPQVGPPPPVPPPQGSPPQRPPPSRHP 214
               +   P       +    P PS  P
Sbjct: 658 DGSGIQQEPSSRRQPATQSTPPRPSWLP 685

Length = 1000

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 32/141 (22%), Positives = 40/141 (28%), Gaps = 13/141 (9%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
           P P  PPP    P   P   P + L      L AG   + N   G P   PP   A P G
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQAL----QALPAGDQQQHNTPTGSPAANPPATFALPAG 106

Query: 139 PPLQ----EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV-----VAGGISETEP 189
           P       E G       P +        PL  P      + L        +G +   + 
Sbjct: 107 PAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQ 166

Query: 190 QVGPPPPVPPPQGSPPQRPPP 210
                      Q    + PP 
Sbjct: 167 SAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 45.5 bits (107), Expect = 7e-05
 Identities = 31/151 (20%), Positives = 40/151 (26%), Gaps = 4/151 (2%)

Query: 76  QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 135
           Q G P   P PEG+P      Q     + Y   +       +         P   P  AP
Sbjct: 367 QTGEPVIAPAPEGYPQQ---SQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAP 423

Query: 136 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 195
            P  P Q+    P    P                    Y+         ++ EP    P 
Sbjct: 424 APEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQ-EPLYQQPQ 482

Query: 196 PVPPPQGSPPQRPPPSRHPLLPPTKITASVE 226
           PV       P+       P  PP      VE
Sbjct: 483 PVEQQPVVEPEPVVEETKPARPPLYYFEEVE 513

Length = 1355

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 95  PPQGPVRNLMYENLILVAGGISEANPHVG----PPLPVPPPQGAPPPGPPLQEEGPPPQG 150
            P  PV  L+ + L  +  G             P  P  PP  A PP PP     P    
Sbjct: 362 APGAPVSELL-DRLEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAA- 419

Query: 151 PHPPVPPPQGPPPPLPP 167
              P P P  P    PP
Sbjct: 420 --RPAPAPAPPAAAAPP 434

Length = 576

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 107 NLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGP 161
           + +   G    A    G     PPP   PP  P      PPP+   PP  PP+GP
Sbjct: 892 DQVFGPGTGRVATAPGGDAASAPPPGAGPPAPPQ---AVPPPRTTQPPAAPPRGP 943

Length = 991

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 21/148 (14%), Positives = 26/148 (17%), Gaps = 18/148 (12%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 139
            P    P    PP  P   P        +       S A   +              P P
Sbjct: 391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

Query: 140 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 199
                  P     P    P+                                    P P 
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAP------------------ARAAPAAAPAPA 492

Query: 200 PQGSPPQRPPPSRHPLLPPTKITASVEG 227
               PP    P       P +  A+  G
Sbjct: 493 DDDPPPWEELPPEFASPAPAQPDAAPAG 520

Length = 700

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 27/123 (21%), Positives = 34/123 (27%), Gaps = 18/123 (14%)

Query: 101 RNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG 160
           R ++ E  I   GG         PP  +P          P     P  + P     P   
Sbjct: 167 REMLVELQIGGRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLP 226

Query: 161 PPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 220
            P P  P                     P   P PP+PP        P P   P++P   
Sbjct: 227 GPSPAQPS------------------APPASIPAPPIPPVIQYVAPPPVPPPQPIIPIQH 268

Query: 221 ITA 223
           I A
Sbjct: 269 IRA 271

Length = 582

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 17/157 (10%), Positives = 26/157 (16%), Gaps = 13/157 (8%)

Query: 70  KSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP 129
            +       PP    P         P                    +   P    P   P
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVA----------PPQAPAVPPPPASAPQQAP 411

Query: 130 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEP 189
                      L       +           P         N   E L  V         
Sbjct: 412 AVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVR---PAPSA 468

Query: 190 QVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 226
               P      +          + P+  P  +  ++E
Sbjct: 469 LEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALE 505

Length = 647

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 23/89 (25%)

Query: 133 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 192
           GAP P         P      P  PP    PP+PP                      +  
Sbjct: 380 GAPAPPSAAWGAPTPA----APAAPPPAAAPPVPPA------------------APARPA 417

Query: 193 PPPPVPPPQGSPPQRPP-PSRHPLLPPTK 220
              P P P       PP  S  P    + 
Sbjct: 418 AARPAPAPAPPAAAAPPARSADPAAAASA 446

Length = 576

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 23/152 (15%), Positives = 30/152 (19%), Gaps = 22/152 (14%)

Query: 73  SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP- 131
           +  Q   P   P             G                     P+  P    P   
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGF----------------PPRAPYASPASYAPEQE 191

Query: 132 QGAPPPGPPLQEEGPPPQGPHPPVPPPQGP-----PPPLPPPKGNLMYENLIVVAGGISE 186
           +   P      E     +    P P    P       P PPP    ++            
Sbjct: 192 RDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDA 251

Query: 187 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 218
               + P  P P      P   P      L P
Sbjct: 252 PVVPIRPSAPGPLAAQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 26/147 (17%), Positives = 31/147 (21%), Gaps = 30/147 (20%)

Query: 74  DSQVGPPPPVPPPEGHPPPVHPPQGP-VRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 132
           D   G P P PP   H      P+ P      YE       G   A+             
Sbjct: 89  DPSAGEPAPPPP---HARRTSEPELPRPGRRPYEGY-----GGPRADDRPPGLPRQDQLP 140

Query: 133 GAPPPGPPLQEEG-----PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 187
            A P  P  Q+       P     +       G PP  P                  S  
Sbjct: 141 TARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYA----------------SPA 184

Query: 188 EPQVGPPPPVPPPQGSPPQRPPPSRHP 214
                      P     P+     R  
Sbjct: 185 SYAPEQERDREPYDAGRPEYDQRRRDY 211

Length = 617

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 225 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 284
           V GP G+      + + ++L+AGG GI+P  AI  ++  + +         V +++  + 
Sbjct: 93  VRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGD------ANKVTLLYGART 146

Query: 285 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 318
           + +L        + +     ++L  +    VT +
Sbjct: 147 AKDL-----LLLDEL-----EELAEKEVHPVTDD 170

Length = 252

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 28/149 (18%), Positives = 37/149 (24%), Gaps = 25/149 (16%)

Query: 118 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 177
           A+   G          A           P  + P  P P P     P  PPK        
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP------- 86

Query: 178 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-----SVEGPYG-- 230
              A   +       PP                   PL       A     S+E P    
Sbjct: 87  ---AAAAAAAAAPAAPPAA-AAAAAPAAAAVEDEVTPLRGAAAAVAKNMDASLEVPTATS 142

Query: 231 -HEVPYHLMYENLILV------AGGIGIS 252
              VP  L+ +N I++        G  +S
Sbjct: 143 VRAVPAKLLIDNRIVINNHLKRTRGGKVS 171

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 11/95 (11%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV-PPPQGAPPP 137
             P  PP    P PV  P               A  ++ A P    P  V  P + AP P
Sbjct: 412 SAPAAPPAAAPPAPVAAPA-AAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP 470

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 172
                             P         P  +G++
Sbjct: 471 AVA------SAAPAPAAAPA---AARLTPTEEGDV 496

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 26/126 (20%), Positives = 33/126 (26%), Gaps = 3/126 (2%)

Query: 112 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK-- 169
             G +  +   G    +            +       +   P  PPP             
Sbjct: 27  TPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRS 86

Query: 170 GNLMYENLIVVAGGISETEP-QVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 228
                 + +  A    E  P   GP  P PPP   PP  PPPS  P L          GP
Sbjct: 87  TPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGP 146

Query: 229 YGHEVP 234
                P
Sbjct: 147 PPAASP 152

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 20/103 (19%), Positives = 25/103 (24%)

Query: 69  SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 128
            +               P   P     P     +   ++    AGG +        P P 
Sbjct: 818 KRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPP 877

Query: 129 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGN 171
            P        PP      PP G   P P P       P P G 
Sbjct: 878 EPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGG 920

Length = 1352

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 32/136 (23%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP- 137
           P  P P P   P P  P     R    E         +  N + G  +P  P    PPP 
Sbjct: 283 PVEPEPLPVPAPVPPTPEDDNPRPTDDEF--------AVPNFNEGLDVPDNPQDPVPPPN 334

Query: 138 ----GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE-PQVG 192
               G P +E   PP     P      P PP  P   N  + + +         + P+  
Sbjct: 335 EGKDGNPNEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQE 394

Query: 193 PPPPVPPPQGSPPQRP 208
           P  P    +  P   P
Sbjct: 395 PNIPEDSNKEVPEDVP 410

Length = 576

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 132 QGAPPPGPPLQEEGPPPQGPHPPV-PPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 190
             +P   P ++++ P P  P P   P P  P  P   P      E     +    E +P 
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPA-----ELPSPASAPTPEQQPP 435

Query: 191 VGPPPPVPPPQGSPPQRPPPSRHPLLP 217
           V    P+PP   SP    P +     P
Sbjct: 436 VARSAPLPP---SPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 12/89 (13%)

Query: 71  SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 130
                    P PV  P   P P  P Q PV                   P      P P 
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQ------------VAPAPQPVHSAPQPA 164

Query: 131 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQ 159
            Q   P  P    +  P   P P +  P+
Sbjct: 165 QQAFQPAEPVAAPQPEPVAEPAPVMDKPK 193

Length = 333

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 25/122 (20%), Positives = 31/122 (25%), Gaps = 22/122 (18%)

Query: 120 PHVGPPLP------VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLM 173
           P+ GPPL             +    P    +        PP   P  P  P PP      
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPE----- 202

Query: 174 YENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEV 233
                        + P     PP P    S    P P       P    A+   P   +V
Sbjct: 203 -----------DPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251

Query: 234 PY 235
           P 
Sbjct: 252 PP 253

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 26/88 (29%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
             P    PP   P    PP                     A P  G P P PPPQ   PP
Sbjct: 729 AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAP--GAPTPQPPPQA--PP 784

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPL 165
            P  +     P+G   P PPPQ  P  +
Sbjct: 785 APQQR-----PRGAPTPQPPPQAGPTSM 807

Length = 991

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 29/124 (23%), Positives = 32/124 (25%), Gaps = 22/124 (17%)

Query: 118 ANPHVGPPL----PVPPPQG-APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 172
            N             P PQ    PP    Q   P  Q P   VPP   P P  P P+   
Sbjct: 71  VNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ--- 127

Query: 173 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS--RHPLLPPTKITASVEGPYG 230
                          +P   P P  P  Q   PQ  P     H    P +       P  
Sbjct: 128 ------------PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVA 175

Query: 231 HEVP 234
              P
Sbjct: 176 APQP 179

Length = 333

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 22/91 (24%), Positives = 27/91 (29%), Gaps = 9/91 (9%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
             P + P      P  PP+G                   A P + P    PP     P  
Sbjct: 51  DEPDMMPAATQALPTQPPEGAAE---------AVRAGDAAAPSLDPATVAPPNTPVEPEP 101

Query: 139 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 169
            P++   P P     P P PQ      P PK
Sbjct: 102 APVEPPKPKPVEKPKPKPKPQQKVEAPPAPK 132

Length = 226

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 19/102 (18%), Positives = 24/102 (23%), Gaps = 21/102 (20%)

Query: 122 VGPPLPVPPPQGAPPPGPP---------LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 172
            G  +P  PP+ AP PG P              P P        P Q P    P  +   
Sbjct: 168 SGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQ- 226

Query: 173 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 214
                          +  V P     P   +         H 
Sbjct: 227 -----------QQPQQQPVQPAQQPTPQNPAQQPPQTEQGHK 257

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 20/135 (14%), Positives = 28/135 (20%), Gaps = 10/135 (7%)

Query: 82  PVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL 141
                    PP  P      +   ++       +                + A PP    
Sbjct: 417 AAAATRAEAPPAAPAPPATADRG-DDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475

Query: 142 QEEGPPPQGPHP----PVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 197
               P    P      P P    P    P    +         A           P P  
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA---AASREDAPAAAAPPAPEA 532

Query: 198 PPPQGSPPQRPPPSR 212
            PP  +P    P +R
Sbjct: 533 RPP--TPAAAAPAAR 545

Length = 830

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 24/136 (17%)

Query: 107 NLILVAGGISEANPHVGPPLPVPPPQGAPP--PGPPLQEE--------------GPPPQG 150
             +        A                 P   G     +              G  P+ 
Sbjct: 73  AAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKP 132

Query: 151 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGIS-----ETEPQVGPPPPVPPPQGSPP 205
              P   P+  P P  P +  L  E +                PQ   P  +PP Q + P
Sbjct: 133 EPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFP 192

Query: 206 QR---PPPSRHPLLPP 218
           Q+     P  +P  P 
Sbjct: 193 QQGPPEQPPGYPQPPQ 208

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 16/100 (16%), Positives = 19/100 (19%), Gaps = 5/100 (5%)

Query: 69  SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 128
             + +     P    P  +   P   PPQ                          P  P 
Sbjct: 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASA-----PSPAADDPVPLPPEPDDPP 749

Query: 129 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 168
            P      P PP            PP  PP          
Sbjct: 750 DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789

Length = 824

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 10/48 (20%), Positives = 12/48 (25%)

Query: 120 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 167
           P V  P   P  Q          ++ P      P    P   PP    
Sbjct: 207 PTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 120 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV 179
                 LP P PQ  PPP PP      PP+    P  P Q    P    + + + E L+ 
Sbjct: 260 LPRATRLPEPEPQPPPPPPPP-----EPPEPEEEPDEPDQ--TDPDDGEETDQIPEELMF 312

Query: 180 VA 181
            A
Sbjct: 313 DA 314

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 222 TASVEGPYGHEVPYHLMY-ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 280
              V GPYG+  P   M   +L+L+AGG+G++P  ++L   L+ ++        N+ +++
Sbjct: 90  IVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVL---LYAMDNRWKY--GNITLIY 144

Query: 281 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 340
             K   +L     FY E I    ++  N++    VTR+ E P      H      I  V 
Sbjct: 145 GAKYYEDLL----FYDELIKD-LAEAENVKIIQSVTRDPEWP----GCHGLPQGFIERVC 195

Query: 341 SGCAMSVLVGTGNNV 355
            G    +      + 
Sbjct: 196 KGVVTDLFREANTDP 210

Length = 289

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 21/126 (16%), Positives = 27/126 (21%), Gaps = 15/126 (11%)

Query: 118 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG----PHPPVPPPQGPPPPLPPPKGNLM 173
                      P    A       +     P G      P  PP     PP      +  
Sbjct: 796 FRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSK 855

Query: 174 YENLI--VVAGGISETEPQVGPPPPVPPPQGSPPQR---------PPPSRHPLLPPTKIT 222
            +       A G +       P P   P   +PP+          P P   P        
Sbjct: 856 SKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGP 915

Query: 223 ASVEGP 228
               GP
Sbjct: 916 MPPGGP 921

Length = 1352

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 120 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV 179
           PH     P+  P   P      Q++   PQ P  P P  Q P  P+ P       +  + 
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA 799

Query: 180 VAGGISETEPQVGP--------PPPVPPPQGSPPQRPPPSR------HPLL 216
                 + +  V P         P  P PQ   PQ+P   +      HPLL
Sbjct: 800 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLL 850

Length = 1355

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 16/92 (17%), Positives = 18/92 (19%), Gaps = 23/92 (25%)

Query: 116 SEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYE 175
           S  + H   P P   P    P   P  +         P   P Q    P P         
Sbjct: 192 SHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNP------ 245

Query: 176 NLIVVAGGISETEPQVGPPPPVPPPQGSPPQR 207
                               P    QG    R
Sbjct: 246 -----------------AQQPPQTEQGHKRSR 260

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 225 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 284
           +EGP G           LIL+AGG G +P  +IL  +L + ++      R + + W  + 
Sbjct: 84  IEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGSK------RPIHLYWGART 137

Query: 285 SNELSLLS 292
             +L L  
Sbjct: 138 EEDLYLDE 145

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 85  PPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 144
           P EG      P   P       N +       E         P          G PL + 
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRL-------EKEVRSLRSAPTAAA---TAAGAPLPDF 395

Query: 145 GPPPQGPHPPVPPPQGPPPPLPPP 168
            P P+GP  P P      PPL  P
Sbjct: 396 DPRPRGPPAPEPARSAEAPPLVAP 419

Length = 504

>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWA 281
              V+GPYG    +       + +AGGIGI+PF+++L  +  R ++        V + + 
Sbjct: 299 KLEVDGPYGK-FDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD------PPVHLFYC 351

Query: 282 VKKSNE 287
            +   E
Sbjct: 352 SRNWEE 357

Length = 438

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 2/82 (2%)

Query: 135 PPPGPPLQ--EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 192
           P P   L+  +EGPP  G     PP  G  P  P              AGG +     V 
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP 437

Query: 193 PPPPVPPPQGSPPQRPPPSRHP 214
                     +P   P P+   
Sbjct: 438 DAAAAAAAPPAPAAAPQPAVRL 459

Length = 598

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 27/167 (16%), Positives = 33/167 (19%), Gaps = 14/167 (8%)

Query: 80  PPPVPPPEGHPPPVHPPQGP-VRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
                   G    +           +               P  GP    P  +    P 
Sbjct: 30  DAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPT 89

Query: 139 PPL-----------QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 187
             L               PP      P PPP  PP   PP     + E L  V       
Sbjct: 90  WSLSTLAPASPAREGSPTPPGPSSPDP-PPPTPPPASPPPSPAPDLSEMLRPVGSP-GPP 147

Query: 188 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 234
                P     P   +            L   + TA        E P
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 23/111 (20%), Positives = 27/111 (24%), Gaps = 24/111 (21%)

Query: 124 PPLPVPPPQGAPPPG-PPLQEEGPPPQGPHPPVPP----PQGPPPPLPPPKGNLMYENLI 178
            P P  P   AP P  P       P       +PP     +   PP  PP          
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP---------- 414

Query: 179 VVAGGISETEPQVGPPPPVPPP---QGSPPQRPPPSRHPLLPPTKITASVE 226
                     P V   P   P       P    P    P  P  +  A + 
Sbjct: 415 ------RPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIA 459

Length = 585

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 47/196 (23%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 64  RDYILSKSESDSQVGPPPPVPPPEGHPPP-VHPP--QGPV------RNLMYENLILVAGG 114
           R+  L  + S   + PPP  P P+       HPP  QGP        NL     +     
Sbjct: 333 REQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSS 392

Query: 115 ISEANPHVGPPLPVP-PPQGAPPPGPPLQEEG-------PPPQGPHPPVPPPQGPPPPLP 166
           +   +P    P P+   PQ  P    P Q          PP    HP      GPP   P
Sbjct: 393 LPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQS-P 451

Query: 167 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 226
             +               S   P +GPPP +P    + P R      P       +    
Sbjct: 452 FAQHPF-----------TSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCA 500

Query: 227 GPYGHEVPYHLMYENL 242
           GP     P  +  E L
Sbjct: 501 GPGPPLPPIQIKEEPL 516

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 41/155 (26%), Positives = 46/155 (29%), Gaps = 21/155 (13%)

Query: 80  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPL------PVPPPQG 133
             P  PP        PPQG                   A     P        P   PQ 
Sbjct: 189 LAPSAPPPTPSAQAVPPQGS------------PIAAQPAPQPQQPSPLSLISAPSLHPQR 236

Query: 134 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 193
            P P PPLQ +    Q P PP P  + P      P G  M   L    G +    P   P
Sbjct: 237 LPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGP-GPPMPHAL--QQGPVFLQHPSSNP 293

Query: 194 PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 228
           P P    Q   P  P PS+      T  + S   P
Sbjct: 294 PQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQP 328

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 21/102 (20%), Positives = 26/102 (25%), Gaps = 23/102 (22%)

Query: 117 EANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP------QGPHPPVPPPQGPPPPLPPPKG 170
                 GPP P P P     P   L +E            P  P P     P    P   
Sbjct: 120 SLPTAGGPPTPDPAPLAQLDPLKALDQEPLSAADLDDLSAPLFP-PLDARLPAFAAPIDA 178

Query: 171 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 212
               E  +            V P  P+P P+ +P        
Sbjct: 179 ----EPTM------------VPPFVPLPAPEPAPAPASQAPS 204

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 396

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 70  KSESDSQVGPPPPVPPPEGH--PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 127
           K     +V   P  P P+G    P V P    V  L  +    VA  I +A       + 
Sbjct: 31  KKHRQDEVAAIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVD 90

Query: 128 ----VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 168
                 PP  + P G P+  + P P  P    P    P  P P P
Sbjct: 91  PQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKP 135

Length = 226

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 24/104 (23%), Positives = 27/104 (25%), Gaps = 18/104 (17%)

Query: 69  SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 128
           S+S S S     PP P     PP   PP                            P P 
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTA----------------TAPPPTPPPP 555

Query: 129 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 172
           PP         P Q   P    P PP+P    P P        +
Sbjct: 556 PPTATQASSNAPAQI--PADSSPPPPIPEEPTPSPTKDSSPEEI 597

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 17/94 (18%), Positives = 19/94 (20%), Gaps = 19/94 (20%)

Query: 76  QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 135
           +          +  PPP   P  P                    P    P P        
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPP-------------------APTPPLPQPTATAPPPT 551

Query: 136 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 169
           PP PP          P         PPP    P 
Sbjct: 552 PPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585

Length = 620

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 20/100 (20%), Positives = 25/100 (25%), Gaps = 10/100 (10%)

Query: 129 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE 188
           P PQ  PP     Q   P P         P G       P G+         A       
Sbjct: 51  PSPQAPPPVAQLPQP-LPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAG 109

Query: 189 PQVGPPP----PVPPPQG-----SPPQRPPPSRHPLLPPT 219
           P +   P    PV  P       +      P++   L   
Sbjct: 110 PTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQL 149

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 23/114 (20%), Positives = 30/114 (26%), Gaps = 7/114 (6%)

Query: 111 VAGGISEANPHVGPP---LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 167
           VA    + +P   PP   LP P PQ  P         G   Q   P   P   PP     
Sbjct: 44  VAEFPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFAL 103

Query: 168 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQR---PPPSRHPLLPP 218
           P G      +    G +   +  V             P +       +     P
Sbjct: 104 PAGPAG-PTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAP 156

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 22/93 (23%), Positives = 23/93 (24%), Gaps = 25/93 (26%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
           G P P     G P P   P  P                        PP   PP   A P 
Sbjct: 380 GAPAPPSAAWGAPTPA-APAAP------------------------PPAAAPPVPPAAPA 414

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 170
            P      P P  P    PP +   P      G
Sbjct: 415 RPAAARPAPAPAPPAAAAPPARSADPAAAASAG 447

Length = 576

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 39/155 (25%), Positives = 50/155 (32%), Gaps = 9/155 (5%)

Query: 69  SKSESDSQVGPPPPVPPPEGHPP---PVHPPQGPVRNLMYENLILVAGGISEANPHVGPP 125
           + + S     P     PP+G P    P   PQ P    +     L    +   +P   P 
Sbjct: 188 ALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHP---PL 244

Query: 126 LPVPPPQGAP-PPGPPLQEEGPPPQGPHPPVPPP--QGPPPPLPPPKGNLMYENLIVVAG 182
            P    Q +P PP P  +       GP PP+P    QGP     P         L     
Sbjct: 245 QPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQV 304

Query: 183 GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLP 217
                  Q  P    PP Q +   + PP   PL P
Sbjct: 305 PPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPP 339

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 16/83 (19%)

Query: 110 LVAGGISEANPHVGP----------PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQ 159
           +V   ++ A+    P                      P          P  P  P   P 
Sbjct: 258 IVRAFLTWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAA----AAAPAPPPNPPATPP 313

Query: 160 GPPPPLPPPKGNLMYENLIVVAG 182
            PP      +G+     ++VV  
Sbjct: 314 EPPA--RRGRGSAALWFVVVVLA 334

Length = 656

>gnl|CDD|234601 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 225 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAI 257
           + GP G+      +   ++LV GGIG++P   +
Sbjct: 88  IRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYEL 120

Length = 250

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 244 LVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 303
           ++AGG GI+P  ++L      + +        V +V+  +  ++L       +E +    
Sbjct: 1   MIAGGTGIAPLYSVL---KALLEDED---GTEVYLVYGNRTEDDL-----LLREEL-EEL 48

Query: 304 SDKLNLETFIYVTRETE 320
           + K      + V+R  +
Sbjct: 49  AKKYPNLKVVAVSRTDD 65

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 125  PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 184
                P P G  PP P   +  P P    P + P +    P+ P         ++    G+
Sbjct: 2492 AGAAPDPGGGGPPDP---DAPPAPSRLAPAILPDEPVGEPVHP--------RMLTWIRGL 2540

Query: 185  SE--TEPQVGPPPPVPP--PQGSPPQRPPPSRHPLLPP 218
             E  ++    PPPP+PP  P  +P +  PP R    P 
Sbjct: 2541 EELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPS 2578

Length = 3151

>gnl|CDD|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 453 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRS 503
           + +     +G RP++KE+    +K+  +  +GV  CGPPSL      E+R+
Sbjct: 102 SGTRVEFHFG-RPNWKEVLKDIAKQHPNNSIGVFCCGPPSL----VDELRN 147

Length = 149

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 31/135 (22%), Positives = 41/135 (30%), Gaps = 13/135 (9%)

Query: 115 ISEA-NPHVGPPL----PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG--PPPPLPP 167
           ISE  +  +G P+     V P  G P P PP       P+ P P   P +G   P     
Sbjct: 70  ISETLSRELGRPIRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDR 129

Query: 168 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPP---PSRHPLLPPTKITAS 224
           P G    + L          + +  P            Q+     P R P   P      
Sbjct: 130 PPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPE 189

Query: 225 VE---GPYGHEVPYH 236
            E    PY    P +
Sbjct: 190 QERDREPYDAGRPEY 204

Length = 617

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 127 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 186
           P  PP    PPG  L    PPP      VPP   P    P P+        ++ A  +  
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHP 234

Query: 187 TEPQVGPPPPVPPPQGSPPQRP--PPSRHPLLP 217
                  PP  P        +P  P SRHP   
Sbjct: 235 QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSS 267

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 24/96 (25%), Positives = 26/96 (27%), Gaps = 28/96 (29%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
           G  P     E  P     P GP                       G P P   P   PP 
Sbjct: 124 GANPVTATGEPVPQMPASPPGP----------------------EGEPQPGNTPVSFPPQ 161

Query: 138 GPPLQEEGPPPQGPHP---PVPPPQGPPPPLPPPKG 170
           G       PPP   +P     PPPQ     +P P  
Sbjct: 162 G---SVAVPPPTAFYPGNGVTPPPQVTYQSVPVPNR 194

Length = 475

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 23/87 (26%), Positives = 25/87 (28%), Gaps = 8/87 (9%)

Query: 127 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 186
             PP    P   PP+ +  PP     PPV      PPP  P                   
Sbjct: 29  FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAA--------PPPDPEPPV 80

Query: 187 TEPQVGPPPPVPPPQGSPPQRPPPSRH 213
             P   P P  PP     P  PPP   
Sbjct: 81  PGPAGPPSPLAPPAPARKPPLPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	524
PLN02844	722	oxidoreductase/ferric-chelate reductase	100.0
PLN02631	699	ferric-chelate reductase	100.0
PLN02292	702	ferric-chelate reductase	100.0
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	100.0
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.96
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.93
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.91
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	99.9
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.9
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	99.9
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	99.9
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	99.9
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	99.9
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	99.9
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	99.89
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	99.89
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	99.89
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	99.89
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	99.89
PRK08051	232	fre FMN reductase; Validated	99.89
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	99.89
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	99.88
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	99.88
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	99.88
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	99.88
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	99.88
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	99.88
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.88
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	99.87
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.87
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	99.87
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.86
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.85
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.85
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	99.85
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	99.85
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	99.83
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	99.83
PRK10926	248	ferredoxin-NADP reductase; Provisional	99.82
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	99.82
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	99.82
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.82
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.81
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.81
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	99.81
PRK05713	312	hypothetical protein; Provisional	99.81
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	99.81
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	99.81
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	99.79
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	99.78
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.78
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	99.78
PRK05802	320	hypothetical protein; Provisional	99.77
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.77
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.76
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	99.76
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	99.75
PTZ00274	325	cytochrome b5 reductase; Provisional	99.75
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	99.75
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	99.73
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	99.73
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	99.69
PLN02252	888	nitrate reductase [NADPH]	99.69
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.69
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.63
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.63
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.61
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.6
cd06193	235	siderophore_interacting Siderophore interacting pr	99.58
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.54
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.53
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	99.52
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.5
cd06203	398	methionine_synthase_red Human methionine synthase	99.44
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	99.39
PRK06214	530	sulfite reductase; Provisional	99.32
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.23
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.22
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	99.22
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.15
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.08
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.4
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	98.36
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	98.36
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	98.34
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.86
KOG3378	385	consensus Globins and related hemoproteins [Energy	97.48
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	92.74
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	86.24
PHA03378	991	EBNA-3B; Provisional	85.29
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	83.18

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=100.00  E-value=9.4e-62  Score=541.80  Aligned_cols=361  Identities=30%  Similarity=0.531  Sum_probs=282.1

Q ss_pred             ecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 009819            8 PIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPE   87 (524)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (524)
                      ++...++|+||||+||+++.++++|||||||+|+|+.+++.++++||+.|+||++|++++....+.+..           
T Consensus       332 ~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~~-----------  400 (722)
T PLN02844        332 PKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSETN-----------  400 (722)
T ss_pred             ECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCCC-----------
Confidence            455689999999999999999999999999999886556789999999999999999988654221000           


Q ss_pred             CCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           88 GHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP  167 (524)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (524)
                                                                                                      
T Consensus       401 --------------------------------------------------------------------------------  400 (722)
T PLN02844        401 --------------------------------------------------------------------------------  400 (722)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEec
Q 009819          168 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAG  247 (524)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAG  247 (524)
                                                                  ..     .++++.|+||||.+..+...+++++||||
T Consensus       401 --------------------------------------------~~-----~~~~v~VeGPYG~~s~~~~~~~~lVLIAG  431 (722)
T PLN02844        401 --------------------------------------------QM-----NCIPVAIEGPYGPASVDFLRYDSLLLVAG  431 (722)
T ss_pred             --------------------------------------------cc-----cceEEEEECCccCCCCCccCCCeEEEEEc
Confidence                                                        00     12589999999998766667899999999


Q ss_pred             CcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCCCCCCC--cc
Q 009819          248 GIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPL--EE  325 (524)
Q Consensus       248 GiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~~~~--~~  325 (524)
                      |+||||++|+++++.++.+.. ....++|+|+|++|+.+|+.|++++..++..+. .+..++++++|+||+.....  ++
T Consensus       432 GiGITPfLSiLrdl~~~~~~~-~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~-~~~~~lkl~iyVTRE~~~~~rl~~  509 (722)
T PLN02844        432 GIGITPFLSILKEIASQSSSR-YRFPKRVQLIYVVKKSQDICLLNPISSLLLNQS-SNQLNLKLKVFVTQEEKPNATLRE  509 (722)
T ss_pred             CcCHHHHHHHHHHHHhccccc-cCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhH-HHhcCceEEEEECCCCCCCCchhh
Confidence            999999999999998642211 123468999999999999999998875543221 23348999999999876422  11


Q ss_pred             cccccccc--cccCCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhheeeCCCCCch----------------
Q 009819          326 GELHKTMS--SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHS----------------  387 (524)
Q Consensus       326 ~~i~~~~~--~~~~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~v~p~~~~s----------------  387 (524)
                      ...+.++.  .++.|   +.+++++||++||+|++++|++||++|+++++++++||| |.|..+                
T Consensus       510 ~i~~~~~~~~~~~~~---~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~  585 (722)
T PLN02844        510 LLNQFSQVQTVNFST---KCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFI-PSEHKSHSGVKMAASGEMKTAK  585 (722)
T ss_pred             HhhccchhhhcCCCC---CCCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEEe-ccccccccchhccccccccccc
Confidence            00000111  12222   456799999999999999999999999999999999999 555333                


Q ss_pred             ----hhHHHHHHHHHHhhheeeccceeeeehhhhhhhhccccc-CCCCcccccccccccccccccccccCCCcccccccC
Q 009819          388 ----WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSAREN-YKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYG  462 (524)
Q Consensus       388 ----~~~~~~l~l~~m~~gV~v~g~~vi~~w~~~~~~~~~~~s-~~~~~ie~~~p~~~~~~~~~~~~~~~L~~~~~V~~G  462 (524)
                          ||++++++++||++||++ ||+|+.+|+ |+|++++.+. .+++.++.    ....++    ....+.+..++|||
T Consensus       586 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~g  655 (722)
T PLN02844        586 EKTPSWVVDLLLIVSFIIAITC-STFVAIILR-WRRLKKEIPRVSQKQGIKP----EEGSME----KRGPVLEEHEIHFG  655 (722)
T ss_pred             CCCchHHHHHHHHHHHHHHhee-cceEeEeee-ccccccCCccccccccCCC----CCcccc----ccccccccceeecC
Confidence                999999999999999988 999999999 7777655443 22222221    111222    22334567899999


Q ss_pred             CCCChHHHHHhhhcccCCceEEEEEeCChhhHHHHHHHHHhccc-----cccCCCceEEEEEeeccC
Q 009819          463 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSL-----MRECHDPIFHFHSHSFDL  524 (524)
Q Consensus       463 ~RPdl~~I~~~~~~~~~~~~VGVfvCGP~sL~~~Va~~c~~~n~-----~~~~~~~~f~fHsEsF~L  524 (524)
                      +|||++|||.++.+++++++|||+||||++||++||++||++|.     .+.+.++.|||||.||+|
T Consensus       656 ~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f~l  722 (722)
T PLN02844        656 GRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNFTL  722 (722)
T ss_pred             CCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeecccCC
Confidence            99999999999999999999999999999999999999999997     456667889999999997

>PLN02631 ferric-chelate reductase

Probab=100.00  E-value=4.3e-61  Score=534.43  Aligned_cols=354  Identities=31%  Similarity=0.526  Sum_probs=284.3

Q ss_pred             CCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 009819           10 KTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGH   89 (524)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (524)
                      .+.++|+||||+||+++..+.+|||||||+|+|++++++++++||+.|+||++|++.+....                  
T Consensus       330 ~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~g------------------  391 (699)
T PLN02631        330 TPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSI------------------  391 (699)
T ss_pred             CCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcCC------------------
Confidence            45799999999999999999999999999999875568999999999999999998774210                  


Q ss_pred             CCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           90 PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK  169 (524)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (524)
                                                                                                      
T Consensus       392 --------------------------------------------------------------------------------  391 (699)
T PLN02631        392 --------------------------------------------------------------------------------  391 (699)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEecCc
Q 009819          170 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGI  249 (524)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGi  249 (524)
                                                                       ..+++.+|||||.+..+..+++++||||||+
T Consensus       392 -------------------------------------------------~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGs  422 (699)
T PLN02631        392 -------------------------------------------------DSLEVSTEGPYGPNSFDVSRHNSLILVSGGS  422 (699)
T ss_pred             -------------------------------------------------CeeEEEEECCCCCCCCCcCCCCcEEEEEeCc
Confidence                                                             1247999999998765555788999999999


Q ss_pred             ChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCCCCCCCcccccc
Q 009819          250 GISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELH  329 (524)
Q Consensus       250 GITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~~~~~~~~i~  329 (524)
                      ||||++|++++++++..+. ..+.++|+|+|++|+.+|+.+.+++..........+..++++++|+||+++.. ++++..
T Consensus       423 GITP~lSiL~~ll~~~~~~-~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~~~-~~~~~~  500 (699)
T PLN02631        423 GITPFISVIRELIFQSQNP-STKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP-ETTDDH  500 (699)
T ss_pred             ChHhHHHHHHHHHhccccc-ccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCCCCc-cccccc
Confidence            9999999999998753211 12345899999999999998666654321111112345899999999987654 323333


Q ss_pred             cc-cccccCCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhheeeCCCC-----CchhhHHHHHHHHHHhhhe
Q 009819          330 KT-MSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGLLFLACMVGGV  403 (524)
Q Consensus       330 ~~-~~~~~~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~v~p~~-----~~s~~~~~~l~l~~m~~gV  403 (524)
                      +. ...|++|.++|++++.+.|++||+|++++|++||++|++++|++++|||+|.|     .++||.++++.++..  ++
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~--~~  578 (699)
T PLN02631        501 RLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSYRGLWDMFLG--SV  578 (699)
T ss_pred             ccccccccccCCCCCCceeeecCCccHHHHHHHHHHHHHHHHHHHhhheeEecccCCCCCcccchHHHHHHHHHHH--Hh
Confidence            32 45679999999999999999999999999999999999999999999999999     567999999999443  34


Q ss_pred             eec-cceeeeehhhhhhhhccccc-CCCCccccccc-cccc------ccccccccccCCCcccccccCCCCChHHHHHhh
Q 009819          404 LIF-GGTVIGFWHLWERKSSAREN-YKDDSIEVDNA-QNVG------TMAHNDIRKKDTKSSTNILYGSRPDFKEIFGST  474 (524)
Q Consensus       404 ~v~-g~~vi~~w~~~~~~~~~~~s-~~~~~ie~~~p-~~~~------~~~~~~~~~~~L~~~~~V~~G~RPdl~~I~~~~  474 (524)
                      +|| |+.++.+||.+++.+.+++. ++++.+|+.+| ..++      ..+.++.+.+.+.+.+++|||+|||+++||.  
T Consensus       579 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~--  656 (699)
T PLN02631        579 CIFISSSIVFLWRKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILL--  656 (699)
T ss_pred             heeccceeeeeechhhccccccchhhccccccCCCCCCCCcccccccchhhhcccccccccceeeeecCCCCHHHHHH--
Confidence            445 88899999987776544332 46677775554 2223      5566777888888999999999999999998  


Q ss_pred             hcccCCceEEEEEeCChhhHHHHHHHHHhccccccCCCceEEEEEeecc
Q 009819          475 SKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD  523 (524)
Q Consensus       475 ~~~~~~~~VGVfvCGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF~  523 (524)
                       ++..+++|||+||||++|+++||++|++.+.      ..|||||.||+
T Consensus       657 -~~~~~~~vgvlv~gp~~~~~~va~~c~s~~~------~~~~f~s~sf~  698 (699)
T PLN02631        657 -EAEGSEDVGVMVCGPRKMRHEVAKICSSGLA------KNLHFEAISFN  698 (699)
T ss_pred             -hccCCCceeEEEECcHHHHHHHHHHHhcCCC------cceeEEeeccc
Confidence             4455679999999999999999999999762      45999999997

>PLN02292 ferric-chelate reductase

Probab=100.00  E-value=6.9e-61  Score=533.50  Aligned_cols=347  Identities=29%  Similarity=0.481  Sum_probs=282.3

Q ss_pred             CCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 009819           10 KTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGH   89 (524)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (524)
                      ...++|+||||+||+++.++.+||||||++|+|++++++++++||+.|+||++|++.+...+..                
T Consensus       347 ~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~gd~i----------------  410 (702)
T PLN02292        347 NPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSSSDQI----------------  410 (702)
T ss_pred             CCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCCCCcc----------------
Confidence            3468999999999999999999999999999986556789999999999999999887433110                


Q ss_pred             CCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           90 PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK  169 (524)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (524)
                                                                                                      
T Consensus       411 --------------------------------------------------------------------------------  410 (702)
T PLN02292        411 --------------------------------------------------------------------------------  410 (702)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEecCc
Q 009819          170 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGI  249 (524)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGi  249 (524)
                                                                       .++++.|+||||.+..+...+++++|||||+
T Consensus       411 -------------------------------------------------~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGi  441 (702)
T PLN02292        411 -------------------------------------------------DRLAVSVEGPYGPASTDFLRHESLVMVSGGS  441 (702)
T ss_pred             -------------------------------------------------ccceEEEECCccCCccccccCCcEEEEEecc
Confidence                                                             1247999999999876555678999999999


Q ss_pred             ChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc-CCcccCCCceEEEEEEcCCCCCCCccccc
Q 009819          250 GISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI-CPFFSDKLNLETFIYVTRETEPPLEEGEL  328 (524)
Q Consensus       250 GITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell-~~~~~~~~~l~I~IyVTr~~~~~~~~~~i  328 (524)
                      ||||+++++++++++..+ ..++.++++|+|++|+.+|+.|++++.+++. ....++..++++++|+|++++++.+.+..
T Consensus       442 GITP~lsil~~L~~~~~~-~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~  520 (702)
T PLN02292        442 GITPFISIIRDLIYTSST-ETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTG  520 (702)
T ss_pred             CHHHHHHHHHHHHhcccc-ccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCccccc
Confidence            999999999999875221 1122478999999999999999887776642 11122456899999999988766544445


Q ss_pred             cccccccc--CCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhheeeCCCC----CchhhHHHHHHHHHHhhh
Q 009819          329 HKTMSSSI--YPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN----IHSWWYKGLLFLACMVGG  402 (524)
Q Consensus       329 ~~~~~~~~--~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~v~p~~----~~s~~~~~~l~l~~m~~g  402 (524)
                      +++|+++.  +|.+++++++++||++||+|++++|++||++|++++|++++|||+|.|    .++||.++++.+++||+|
T Consensus       521 ~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (702)
T PLN02292        521 NMNIIKTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPIDQNSNKYTLAYKSLIYLLVISIS  600 (702)
T ss_pred             chhhhhhhcCCCCCCCCceEEEeCCCchHHHHHHHHHHHHHHHHHHHHhheeEeccccCCCCCCccHHHHHHHHHHHHHH
Confidence            66776554  555569999999999999999999999999999999999999999999    455999999999999999


Q ss_pred             eeeccceeeeehhhhhhhhccc-ccCCCCcccccccccccccccccccccCCCcccccccCCCCChHHHHHhhhcccCCc
Q 009819          403 VLIFGGTVIGFWHLWERKSSAR-ENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHV  481 (524)
Q Consensus       403 V~v~g~~vi~~w~~~~~~~~~~-~s~~~~~ie~~~p~~~~~~~~~~~~~~~L~~~~~V~~G~RPdl~~I~~~~~~~~~~~  481 (524)
                      |++ |+.++.+||.   +++++ +..+.+..       ....+.++.+.+.+.+.+++|||+|||+++||    ++++++
T Consensus       601 i~~-~~~~~~~w~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~----~~~~~~  665 (702)
T PLN02292        601 VVA-TSTAAMLWNK---KKYYKKSSQQVDNV-------DSPREIESSPQQLLVQRTNIHYGERPNLNKLL----VGLKGS  665 (702)
T ss_pred             hhh-hhhHHHhhcc---cccccchhcccccc-------ccccccccCcccccccceeeeccCCCCHHHHH----HhcCCC
Confidence            998 8888889986   22222 22222222       12356667788888899999999999999999    455689


Q ss_pred             eEEEEEeCChhhHHHHHHHHHhccccccCCCceEEEEEeecc
Q 009819          482 DVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD  523 (524)
Q Consensus       482 ~VGVfvCGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF~  523 (524)
                      +|||+||||++|+++||++|++.+.      ..|||||.||+
T Consensus       666 ~vgvlv~gp~~~~~~va~~c~s~~~------~~~~~~s~sf~  701 (702)
T PLN02292        666 SVGVLVCGPKKMRQKVAKICSSGLA------ENLHFESISFS  701 (702)
T ss_pred             ceeEEEECcHHHHHHHHHHHhcCCC------cceeEEeeccc
Confidence            9999999999999999999999762      45999999997

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.4e-39  Score=362.47  Aligned_cols=266  Identities=31%  Similarity=0.524  Sum_probs=203.1

Q ss_pred             EEEeecC-CCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCC
Q 009819            4 CGIGPIK-TYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPP   82 (524)
Q Consensus         4 ~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~   82 (524)
                      .++..+| +.|+|++|||+|++||.++.+|||||||+|+|  ++++++++||+.|+||++|++++.+.+... +.     
T Consensus       370 i~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~-~~-----  441 (646)
T KOG0039|consen  370 LELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKALGDWTEKLRNAFSEVSQPP-ES-----  441 (646)
T ss_pred             EEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEecCcHHHHHHHHHhhhcccc-cc-----
Confidence            4566666 69999999999999999999999999999999  348999999999999999999998532210 00     


Q ss_pred             CCCCCCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           83 VPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP  162 (524)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (524)
                                                                                                      
T Consensus       442 --------------------------------------------------------------------------------  441 (646)
T KOG0039|consen  442 --------------------------------------------------------------------------------  441 (646)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccE
Q 009819          163 PPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENL  242 (524)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~v  242 (524)
                                                            ++        . .     ..+++.||||||....+..+|+++
T Consensus       442 --------------------------------------~~--------~-~-----~~~~i~IdGPYG~~s~d~~~~e~~  469 (646)
T KOG0039|consen  442 --------------------------------------DK--------S-Y-----PFPKILIDGPYGAPSQDVFKYEVL  469 (646)
T ss_pred             --------------------------------------cc--------c-c-----cCceEEEECCCCCCchhhhhcceE
Confidence                                                  00        0 0     125899999999999899999999


Q ss_pred             EEEecCcChHHHHHHHHHHHHHhhcCC----------CCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEE
Q 009819          243 ILVAGGIGISPFLAILSDILHRINEGK----------SCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETF  312 (524)
Q Consensus       243 VLIAGGiGITP~lSiL~~Ll~~~~~~~----------~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~  312 (524)
                      +||+||+|+||++|++++++.+.+.+.          ..+.++++|+|.+|+..++.|+.+++.+....  ....-++++
T Consensus       470 vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~--~~~~~~e~~  547 (646)
T KOG0039|consen  470 VLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEY--DSSGVIELH  547 (646)
T ss_pred             EEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHHH--HhcCCchhh
Confidence            999999999999999999998865443          23678899999999999999999999885431  123348899


Q ss_pred             EEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhheeeCCCCCchhhHHH
Q 009819          313 IYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKG  392 (524)
Q Consensus       313 IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~v~p~~~~s~~~~~  392 (524)
                      .|+|+.....+...    ++                                                            
T Consensus       548 ~~~t~~~~~~d~~~----~~------------------------------------------------------------  563 (646)
T KOG0039|consen  548 NYVTSSYEEGDARS----AL------------------------------------------------------------  563 (646)
T ss_pred             eehhHhHhhhhhhh----HH------------------------------------------------------------
Confidence            99987544211110    00                                                            


Q ss_pred             HHHHHHHhhheeeccceeeeehhhhhhhhcccccCCCCcccccccccccccccccccccCCCcccccccCCCCChHHHHH
Q 009819          393 LLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFG  472 (524)
Q Consensus       393 ~l~l~~m~~gV~v~g~~vi~~w~~~~~~~~~~~s~~~~~ie~~~p~~~~~~~~~~~~~~~L~~~~~V~~G~RPdl~~I~~  472 (524)
                          +-|+                 ++...++   ...++                 .+++.  ..+|+| ||||+++|+
T Consensus       564 ----~~~~-----------------~~~~~~~---~~~di-----------------~~g~~--~~~~~g-RPn~~~~~~  599 (646)
T KOG0039|consen  564 ----IQMV-----------------QKLLHAK---NGVDI-----------------VTGLK--VETHFG-RPNWKEVFK  599 (646)
T ss_pred             ----HHHH-----------------Hhhcccc---cCccc-----------------cccce--eeeeCC-CCCHHHHHH
Confidence                0000                 0000011   01111                 12222  577887 999999999


Q ss_pred             hhhcccCCceEEEEEeCChhhHHHHHHHHHhccccccCCCceEEEEEeec
Q 009819          473 STSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF  522 (524)
Q Consensus       473 ~~~~~~~~~~VGVfvCGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF  522 (524)
                      ++++.+++.+||||+|||++|.+++++.|++++..   ..+.|+||+|+|
T Consensus       600 ~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~---~~~~~~f~~E~F  646 (646)
T KOG0039|consen  600 EIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSS---TATRFEFHKENF  646 (646)
T ss_pred             HHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccc---cCceeeeeeccC
Confidence            99999998889999999999999999999998764   346799999998

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.96  E-value=4.1e-28  Score=232.70  Aligned_cols=140  Identities=31%  Similarity=0.535  Sum_probs=111.5

Q ss_pred             CCCccCCCcEEEEEeCCC-CCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 009819           11 TYLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGH   89 (524)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (524)
                      ..++|+||||+||+++.. +.++||||||+|++.+..++++|+||+.+++|.++.+.+.......               
T Consensus        21 ~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~~~~~---------------   85 (210)
T cd06186          21 KPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKSPGGG---------------   85 (210)
T ss_pred             CCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhCcCCC---------------
Confidence            478999999999999998 7889999999999865357899999999445556666655331100               


Q ss_pred             CCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           90 PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK  169 (524)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (524)
                                                                                                      
T Consensus        86 --------------------------------------------------------------------------------   85 (210)
T cd06186          86 --------------------------------------------------------------------------------   85 (210)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEecCc
Q 009819          170 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGI  249 (524)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGi  249 (524)
                                                                       ...++.|+||||.+......+++++|||||+
T Consensus        86 -------------------------------------------------~~~~v~v~GP~G~~~~~~~~~~~~vliagG~  116 (210)
T cd06186          86 -------------------------------------------------VSLKVLVEGPYGSSSEDLLSYDNVLLVAGGS  116 (210)
T ss_pred             -------------------------------------------------ceeEEEEECCCCCCccChhhCCeEEEEeccc
Confidence                                                             1247999999999974445789999999999


Q ss_pred             ChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH
Q 009819          250 GISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK  296 (524)
Q Consensus       250 GITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~  296 (524)
                      ||||+++++++++.+.++  ....++|+|+|++|+.+++.|+.+++.
T Consensus       117 GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~~~~~l~  161 (210)
T cd06186         117 GITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEWFLDELR  161 (210)
T ss_pred             cHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHHHHHHHH
Confidence            999999999999876321  113578999999999999889988775

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=99.93  E-value=3.8e-24  Score=206.64  Aligned_cols=152  Identities=28%  Similarity=0.444  Sum_probs=117.2

Q ss_pred             CeeEEEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCC
Q 009819            1 MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPP   80 (524)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~   80 (524)
                      +|++.+.+.+..+.|+||||++|+++..+..++|||||+|.|.+ ++.++|+||+.|.+|+.|.+.+...          
T Consensus         9 ~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~G~~t~~l~~~l~~G----------   77 (216)
T cd06198           9 TTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKALGDYTRRLAERLKPG----------   77 (216)
T ss_pred             eEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeCChHHHHHHHhCCCC----------
Confidence            36677777665589999999999998766788999999999854 3689999999999999887543211          


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           81 PPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG  160 (524)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (524)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (216)
T cd06198          78 --------------------------------------------------------------------------------   77 (216)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccc
Q 009819          161 PPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYE  240 (524)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~  240 (524)
                                                                                  -+|.|+||||.+.... .++
T Consensus        78 ------------------------------------------------------------~~v~i~gP~G~~~~~~-~~~   96 (216)
T cd06198          78 ------------------------------------------------------------TRVTVEGPYGRFTFDD-RRA   96 (216)
T ss_pred             ------------------------------------------------------------CEEEEECCCCCCcccc-cCc
Confidence                                                                        1578999999986654 378


Q ss_pred             cEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEc
Q 009819          241 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  316 (524)
Q Consensus       241 ~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVT  316 (524)
                      +++|||||+||||+++|+++++.+   .   ..++++|+|++|+.+++.+. +.++++..    +. +++++++.+
T Consensus        97 ~~vlia~GtGiap~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~~-~~l~~l~~----~~-~~~~~~~~~  160 (216)
T cd06198          97 RQIWIAGGIGITPFLALLEALAAR---G---DARPVTLFYCVRDPEDAVFL-DELRALAA----AA-GVVLHVIDS  160 (216)
T ss_pred             eEEEEccccCHHHHHHHHHHHHhc---C---CCceEEEEEEECCHHHhhhH-HHHHHHHH----hc-CeEEEEEeC
Confidence            999999999999999999998764   1   14689999999999987554 44455422    22 566665444

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.91  E-value=4.5e-24  Score=219.74  Aligned_cols=141  Identities=27%  Similarity=0.423  Sum_probs=111.7

Q ss_pred             ecCCCCccCCCcEEEEEeCCCC-CccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009819            8 PIKTYLRYNALSFFFLQVRELS-WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPP   86 (524)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (524)
                      -.+..+ |+||||.||.+.... ..--|||||+++. ++ ++++|.||..||+|++|.|-++..                
T Consensus       237 l~~~~~-~qaGQFAfLk~~~~~~~~~~HPFTIa~s~-~~-sel~FsIK~LGD~Tk~l~dnLk~G----------------  297 (438)
T COG4097         237 LQGPWL-YQAGQFAFLKIEIEEFRMRPHPFTIACSH-EG-SELRFSIKALGDFTKTLKDNLKVG----------------  297 (438)
T ss_pred             cCCccc-ccCCceEEEEeccccccCCCCCeeeeeCC-CC-ceEEEEehhhhhhhHHHHHhccCC----------------
Confidence            445666 999999999998754 4568999999884 44 489999999999999999866432                


Q ss_pred             CCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           87 EGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLP  166 (524)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (524)
                                                                                                      
T Consensus       298 --------------------------------------------------------------------------------  297 (438)
T COG4097         298 --------------------------------------------------------------------------------  297 (438)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEe
Q 009819          167 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVA  246 (524)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIA  246 (524)
                                                                            -++.||||||.|..+. .-.+.|+||
T Consensus       298 ------------------------------------------------------~k~~vdGPYG~F~~~~-g~~~QVWIA  322 (438)
T COG4097         298 ------------------------------------------------------TKLEVDGPYGKFDFER-GLNTQVWIA  322 (438)
T ss_pred             ------------------------------------------------------ceEEEecCcceeeccc-CCcccEEEe
Confidence                                                                  1699999999996653 224599999


Q ss_pred             cCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEE
Q 009819          247 GGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFI  313 (524)
Q Consensus       247 GGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~I  313 (524)
                      ||||||||+|+++.+..+.      ..+.|+|+|++|+.++..+.++ ++.+    +++.+++.+|+
T Consensus       323 GGIGITPFis~l~~l~~~~------s~~~V~L~Y~~~n~e~~~y~~e-Lr~~----~qkl~~~~lHi  378 (438)
T COG4097         323 GGIGITPFISMLFTLAERK------SDPPVHLFYCSRNWEEALYAEE-LRAL----AQKLPNVVLHI  378 (438)
T ss_pred             cCcCcchHHHHHHhhcccc------cCCceEEEEEecCCchhHHHHH-HHHH----HhcCCCeEEEE
Confidence            9999999999999987641      2568999999999999865554 4443    23567788887

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=99.90  E-value=8.9e-23  Score=200.49  Aligned_cols=89  Identities=26%  Similarity=0.294  Sum_probs=68.2

Q ss_pred             EEEEe-CcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819          222 TASVE-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~Vd-GPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell  299 (524)
                      .+.+. ||||.+..+.. ..++++|||||+||||+++|+++++..   +   ..++|+|+|++|+.+++. +.++++++.
T Consensus        82 ~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~---~---~~~~v~l~~~~r~~~d~~-~~~el~~l~  154 (241)
T cd06195          82 TIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW---E---RFDKIVLVHGVRYAEELA-YQDEIEALA  154 (241)
T ss_pred             EEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh---C---CCCcEEEEEccCCHHHhh-hHHHHHHHH
Confidence            58889 99999865543 468999999999999999999998754   1   246899999999999985 455555543


Q ss_pred             CCcccCCCceEEEEEEcCCCC
Q 009819          300 CPFFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~~  320 (524)
                      .   ....++++++++|+.+.
T Consensus       155 ~---~~~~~~~~~~~~s~~~~  172 (241)
T cd06195         155 K---QYNGKFRYVPIVSREKE  172 (241)
T ss_pred             h---hcCCCEEEEEEECcCCc
Confidence            2   11457899888887543

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=99.90  E-value=1.1e-22  Score=198.76  Aligned_cols=67  Identities=24%  Similarity=0.447  Sum_probs=53.8

Q ss_pred             EEEEeCcccCCCCCc---cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819          222 TASVEGPYGHEVPYH---LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN  293 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~---~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e  293 (524)
                      ++.|+||||.+....   ..+++++||||||||||+++|+++++...     ...++|+|+|++|+.+++.+.++
T Consensus       105 ~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~-----~~~~~v~l~~~~r~~~~~~~~~e  174 (220)
T cd06197         105 EVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSR-----NTTWDITLLWSLREDDLPLVMDT  174 (220)
T ss_pred             eEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcc-----cCCCcEEEEEEecchhhHHHHHH
Confidence            688999999987543   34678999999999999999999988641     12468999999999998754333

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.90  E-value=1.3e-22  Score=197.19  Aligned_cols=87  Identities=14%  Similarity=0.274  Sum_probs=67.1

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|.||||.+.......++++|||||+||||+++|++++++.   +   ..++++|+|++|+.+++.+.+ +++++.+ 
T Consensus        86 ~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~~~-~l~~l~~-  157 (231)
T cd06215          86 ELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDT---R---PDADIVFIHSARSPADIIFAD-ELEELAR-  157 (231)
T ss_pred             EEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhc---C---CCCcEEEEEecCChhhhhHHH-HHHHHHH-
Confidence            5889999999865443468999999999999999999998764   1   246799999999999986544 4455422 


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                         +..++++++++|+.+
T Consensus       158 ---~~~~~~~~~~~~~~~  172 (231)
T cd06215         158 ---RHPNFRLHLILEQPA  172 (231)
T ss_pred             ---HCCCeEEEEEEccCC
Confidence               345788888888644

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.90  E-value=2e-22  Score=196.72  Aligned_cols=87  Identities=21%  Similarity=0.366  Sum_probs=67.1

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|+||||.+......+++++|||||+||||+++|+++++..   +   ..++++|+|++|+.+++.|. ++++++.  
T Consensus        86 ~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~~-~~l~~l~--  156 (232)
T cd06212          86 PVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAAS---G---SDRPVRFFYGARTARDLFYL-EEIAALG--  156 (232)
T ss_pred             EEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhc---C---CCCcEEEEEeccchHHhccH-HHHHHHH--
Confidence            5889999999976544568999999999999999999998864   1   24579999999999998654 4445432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....+++++.++++..
T Consensus       157 --~~~~~~~~~~~~s~~~  172 (232)
T cd06212         157 --EKIPDFTFIPALSESP  172 (232)
T ss_pred             --HhCCCEEEEEEECCCC
Confidence              2345688877777643

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=99.90  E-value=1.1e-23  Score=193.23  Aligned_cols=80  Identities=44%  Similarity=0.689  Sum_probs=60.1

Q ss_pred             cccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCC
Q 009819          239 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  318 (524)
Q Consensus       239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~  318 (524)
                      |+++||||||+||||+++++++++.+.+++ ....++|+|+|++|+.+++.|+.++++++.+....  .++++++|+|+.
T Consensus         1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~-~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~--~~~~~~iyvT~~   77 (156)
T PF08030_consen    1 YDNVVLVAGGSGITPILPILRDLLQRQNRG-SSRTRRIKLVWVVRDADELEWFSPELNELLELDRL--GNVEVHIYVTRE   77 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT------EEEEEEEES-TTTTHHHHHHHHHHHHHHHH--TSEEEEEEETT-
T ss_pred             CCEEEEEecCcCHHHHHHHHHHHHHhhccc-cccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc--ccceEEEEEcCC
Confidence            689999999999999999999999876522 34578999999999999999999888776442222  589999999998


Q ss_pred             CCC
Q 009819          319 TEP  321 (524)
Q Consensus       319 ~~~  321 (524)
                      ...
T Consensus        78 ~~~   80 (156)
T PF08030_consen   78 SSA   80 (156)
T ss_dssp             ---
T ss_pred             ccc
Confidence            763

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=99.90  E-value=1.4e-22  Score=196.98  Aligned_cols=87  Identities=23%  Similarity=0.374  Sum_probs=67.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|.||||.+......+++++|||||+||||+++++++++.+.      ..++++|+|++|+.+++.|. ++++++.  
T Consensus        81 ~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~-~~l~~l~--  151 (224)
T cd06189          81 LVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDLYLD-ELLEAWA--  151 (224)
T ss_pred             EEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhccCH-HHHHHHH--
Confidence            58899999999765445789999999999999999999998651      24679999999999998554 4445532  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        .+..++++++++++.+
T Consensus       152 --~~~~~~~~~~~~s~~~  167 (224)
T cd06189         152 --EAHPNFTYVPVLSEPE  167 (224)
T ss_pred             --HhCCCeEEEEEeCCCC
Confidence              2346788888887643

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=99.90  E-value=3e-22  Score=195.73  Aligned_cols=86  Identities=26%  Similarity=0.330  Sum_probs=66.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|.||||.+......+++++|||||+||||+++|+++++.+   .   ..++++|+|++|+.+++.+ .++++++.  
T Consensus        91 ~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~-~~~l~~l~--  161 (236)
T cd06210          91 RLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEW---G---EPQEARLFFGVNTEAELFY-LDELKRLA--  161 (236)
T ss_pred             EEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhc---C---CCceEEEEEecCCHHHhhh-HHHHHHHH--
Confidence            5889999999865544567899999999999999999998764   1   2357999999999999855 44455542  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        ....++++++++++.
T Consensus       162 --~~~~~~~~~~~~s~~  176 (236)
T cd06210         162 --DSLPNLTVRICVWRP  176 (236)
T ss_pred             --HhCCCeEEEEEEcCC
Confidence              244678888888764

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=99.89  E-value=5.4e-22  Score=195.43  Aligned_cols=87  Identities=23%  Similarity=0.367  Sum_probs=68.0

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|+||||.+......+++++|||||+||||+++++++++.+   .   ..++++|+|++|+.+++. +.++++++.  
T Consensus        96 ~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~---~---~~~~i~l~~~~r~~~~~~-~~~~l~~l~--  166 (247)
T cd06184          96 VLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE---G---PGRPVTFIHAARNSAVHA-FRDELEELA--  166 (247)
T ss_pred             EEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc---C---CCCcEEEEEEcCchhhHH-HHHHHHHHH--
Confidence            6889999999866543568999999999999999999999864   1   246799999999999975 455555542  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....++++++++++..
T Consensus       167 --~~~~~~~~~~~~s~~~  182 (247)
T cd06184         167 --ARLPNLKLHVFYSEPE  182 (247)
T ss_pred             --hhCCCeEEEEEECCCC
Confidence              2346788888888653

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=99.89  E-value=4.7e-22  Score=193.95  Aligned_cols=88  Identities=25%  Similarity=0.355  Sum_probs=68.4

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|+||||.+.......++++|||||+||||+++|+++++...      ..++++|+|++|+.+++.|. ++++++.  
T Consensus        85 ~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~------~~~~v~l~~~~r~~~~~~~~-~el~~l~--  155 (231)
T cd06191          85 TVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA------PESDFTLIHSARTPADMIFA-QELRELA--  155 (231)
T ss_pred             EEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEecCCHHHHhHH-HHHHHHH--
Confidence            58899999998655445578999999999999999999987641      24679999999999998654 4445532  


Q ss_pred             cccCCCceEEEEEEcCCCC
Q 009819          302 FFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~~  320 (524)
                        ....++++++++|+++.
T Consensus       156 --~~~~~~~~~~~~s~~~~  172 (231)
T cd06191         156 --DKPQRLRLLCIFTRETL  172 (231)
T ss_pred             --HhCCCeEEEEEECCCCC
Confidence              23567999998887643

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=99.89  E-value=1.1e-21  Score=189.78  Aligned_cols=86  Identities=27%  Similarity=0.422  Sum_probs=66.3

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|.||||.+......+++++|||||+||||+++|++++..+   +   ..++|+|+|++|+.+++.+.+++ +++.  
T Consensus        81 ~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~---~---~~~~v~l~~~~~~~~~~~~~~~l-~~~~--  151 (224)
T cd06187          81 RVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRR---G---EPRPVHLFFGARTERDLYDLEGL-LALA--  151 (224)
T ss_pred             EEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhc---C---CCCCEEEEEecCChhhhcChHHH-HHHH--
Confidence            5889999999876544468899999999999999999998764   1   24689999999999998665544 3332  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        .+..++++++++++.
T Consensus       152 --~~~~~~~~~~~~~~~  166 (224)
T cd06187         152 --ARHPWLRVVPVVSHE  166 (224)
T ss_pred             --HhCCCeEEEEEeCCC
Confidence              244568887777754

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.89  E-value=9.1e-22  Score=191.71  Aligned_cols=86  Identities=22%  Similarity=0.340  Sum_probs=64.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+.... ..++++|||||+||||+++|+++++++   +   ..++++|+|++|+.+++.+.+ +++++.. 
T Consensus        84 ~v~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~---~---~~~~i~l~~~~r~~~~~~~~~-~l~~l~~-  154 (227)
T cd06213          84 RLTVRGPFGDFWLRP-GDAPILCIAGGSGLAPILAILEQARAA---G---TKRDVTLLFGARTQRDLYALD-EIAAIAA-  154 (227)
T ss_pred             EEEEeCCCcceEeCC-CCCcEEEEecccchhHHHHHHHHHHhc---C---CCCcEEEEEeeCCHHHhccHH-HHHHHHH-
Confidence            588999999997543 447899999999999999999998764   1   245799999999999985544 4444321 


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        ....+++++.+++++
T Consensus       155 --~~~~~~~~~~~~s~~  169 (227)
T cd06213         155 --RWRGRFRFIPVLSEE  169 (227)
T ss_pred             --hccCCeEEEEEecCC
Confidence              123467887777764

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=99.89  E-value=7.5e-22  Score=193.81  Aligned_cols=87  Identities=24%  Similarity=0.420  Sum_probs=67.2

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+.......++++|||||+||||+++++++++++   +   ..++|+|+|++|+.+++ ++.++++++.  
T Consensus        92 ~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~-~~~~~l~~l~--  162 (238)
T cd06211          92 ELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLER---G---DTRKITLFFGARTRAEL-YYLDEFEALE--  162 (238)
T ss_pred             EEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhc---C---CCCcEEEEEecCChhhh-ccHHHHHHHH--
Confidence            5889999999976543457899999999999999999998764   1   13579999999999998 4555555542  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....+++++..+++..
T Consensus       163 --~~~~~~~~~~~~s~~~  178 (238)
T cd06211         163 --KDHPNFKYVPALSREP  178 (238)
T ss_pred             --HhCCCeEEEEEECCCC
Confidence              2345688888787653

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>PRK08051 fre FMN reductase; Validated

Probab=99.89  E-value=7.9e-22  Score=193.60  Aligned_cols=86  Identities=23%  Similarity=0.266  Sum_probs=66.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.++......+++||||||+||||+++|+++++..   +   ..++++|+|++|+.+++ ++.++++++.  
T Consensus        85 ~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~---~---~~~~v~l~~g~r~~~~~-~~~~el~~l~--  155 (232)
T PRK08051         85 EIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQ---G---PNRPITLYWGGREEDHL-YDLDELEALA--  155 (232)
T ss_pred             EEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHh---C---CCCcEEEEEEeccHHHh-hhhHHHHHHH--
Confidence            6889999999976544567899999999999999999999864   1   24679999999999998 4555555543  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        .+..+++++..+++.
T Consensus       156 --~~~~~~~~~~~~~~~  170 (232)
T PRK08051        156 --LKHPNLHFVPVVEQP  170 (232)
T ss_pred             --HHCCCcEEEEEeCCC
Confidence              234568887776653

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=99.89  E-value=1.7e-21  Score=186.96  Aligned_cols=153  Identities=20%  Similarity=0.295  Sum_probs=118.0

Q ss_pred             eEEEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHHHHhcCCCCCCCCCCC
Q 009819            3 NCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSKSESDSQVGPP   80 (524)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~~~~~~~~~~~~~~~~   80 (524)
                      +..+.+.. .++|.||||+.|+++.-+...+|||||+|.|.+ .+.++|+||..  |.+|+.|.+.   + ..       
T Consensus        12 ~~~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~~G~~s~~l~~~---~-~G-------   78 (223)
T cd00322          12 LFRLQLPN-GFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVPGGPFSAWLHDL---K-PG-------   78 (223)
T ss_pred             EEEEecCC-CCCcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeCCCchhhHHhcC---C-CC-------
Confidence            34444333 689999999999998766778999999999865 46899999998  9999888754   1 10       


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           81 PPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG  160 (524)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (524)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (223)
T cd00322          79 --------------------------------------------------------------------------------   78 (223)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccc
Q 009819          161 PPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYE  240 (524)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~  240 (524)
                                                                                  -++.|+||+|.++.....++
T Consensus        79 ------------------------------------------------------------~~v~i~gP~G~~~~~~~~~~   98 (223)
T cd00322          79 ------------------------------------------------------------DEVEVSGPGGDFFLPLEESG   98 (223)
T ss_pred             ------------------------------------------------------------CEEEEECCCcccccCcccCC
Confidence                                                                        16889999999965445678


Q ss_pred             cEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCCC
Q 009819          241 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       241 ~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~  319 (524)
                      +++|||||+||||+++|++++....      ..++++|+|++|+.+++.+.+ +++++.    ....++++++++++..
T Consensus        99 ~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~-el~~l~----~~~~~~~~~~~~~~~~  166 (223)
T cd00322          99 PVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFLD-ELEELA----KEGPNFRLVLALSRES  166 (223)
T ss_pred             cEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHHH-HHHHHH----HhCCCeEEEEEecCCC
Confidence            9999999999999999999987641      246799999999999885544 444432    2345788888887643

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.88  E-value=1.9e-21  Score=191.30  Aligned_cols=86  Identities=22%  Similarity=0.396  Sum_probs=66.0

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+......+++++|||||+||||++++++++....      ..++++++|++|+.+++. +.++++++.  
T Consensus       105 ~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~------~~~~i~l~~~~r~~~~~~-~~~el~~l~--  175 (243)
T cd06216         105 VVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG------PTADVVLLYYARTREDVI-FADELRALA--  175 (243)
T ss_pred             EEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEEcCChhhhH-HHHHHHHHH--
Confidence            58899999997654434689999999999999999999987641      246799999999999874 445555542  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        ++..++++++++|+.
T Consensus       176 --~~~~~~~~~~~~s~~  190 (243)
T cd06216         176 --AQHPNLRLHLLYTRE  190 (243)
T ss_pred             --HhCCCeEEEEEEcCC
Confidence              234568888877753

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=99.88  E-value=1.4e-21  Score=190.30  Aligned_cols=86  Identities=21%  Similarity=0.327  Sum_probs=66.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|+||||.+.... ..++++|||||+||||+++++++++...      ..++++|+|++|+.+++.+.+ +++++.  
T Consensus        86 ~v~v~gP~G~~~~~~-~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~~~~~~~~~-~l~~l~--  155 (228)
T cd06209          86 RLTLTGPLGSFYLRE-VKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTRDADLVELD-RLEALA--  155 (228)
T ss_pred             EEEEECCcccceecC-CCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCCHHHhccHH-HHHHHH--
Confidence            578999999987643 3478999999999999999999987641      245799999999999986544 444432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....++++++++++.+
T Consensus       156 --~~~~~~~~~~~~s~~~  171 (228)
T cd06209         156 --ERLPGFSFRTVVADPD  171 (228)
T ss_pred             --HhCCCeEEEEEEcCCC
Confidence              2445789988888644

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=99.88  E-value=2.7e-21  Score=188.49  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=67.4

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|+||||.++......++++|||||+||||+++|++++++...    ....+++|+|++|+.+++.+ .++++++.+ 
T Consensus        80 ~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~----~~~~~v~l~~~~r~~~~~~~-~~el~~l~~-  153 (232)
T cd06190          80 ELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY----LSDRPVDLFYGGRTPSDLCA-LDELSALVA-  153 (232)
T ss_pred             EEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc----CCCCeEEEEEeecCHHHHhh-HHHHHHHHH-
Confidence            578999999997654446789999999999999999999876411    12468999999999999865 445555432 


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                         ...++++++++++..
T Consensus       154 ---~~~~~~~~~~~s~~~  168 (232)
T cd06190         154 ---LGARLRVTPAVSDAG  168 (232)
T ss_pred             ---hCCCEEEEEEeCCCC
Confidence               345788888877643

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=99.88  E-value=1.8e-21  Score=188.52  Aligned_cols=87  Identities=20%  Similarity=0.334  Sum_probs=67.0

Q ss_pred             EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|+||||.++... ..+++++|||||+||||+++++++++.+   +   ..++|+|+|++|+.+++. +.++++++. 
T Consensus        79 ~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~---~---~~~~v~l~~~~r~~~~~~-~~~el~~l~-  150 (222)
T cd06194          79 ALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQ---G---HQGEIRLVHGARDPDDLY-LHPALLWLA-  150 (222)
T ss_pred             EEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhc---C---CCccEEEEEecCChhhcc-CHHHHHHHH-
Confidence            578999999997653 4567899999999999999999998764   1   246799999999999985 445555542 


Q ss_pred             CcccCCCceEEEEEEcCCC
Q 009819          301 PFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~  319 (524)
                         ....+++++.++++..
T Consensus       151 ---~~~~~~~~~~~~~~~~  166 (222)
T cd06194         151 ---REHPNFRYIPCVSEGS  166 (222)
T ss_pred             ---HHCCCeEEEEEEccCC
Confidence               2345788877777643

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=99.88  E-value=2e-21  Score=196.28  Aligned_cols=87  Identities=14%  Similarity=0.294  Sum_probs=66.5

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+... ...+++||||||+||||+++|+++++....     ..++|+|+|++|+.+++.+.+ +++++.  
T Consensus       134 ~v~i~gP~G~f~l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~-----~~~~v~l~~g~r~~~d~~~~~-el~~l~--  204 (283)
T cd06188         134 KVTASGPFGEFFIK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK-----SKRKISFWYGARSLKELFYQE-EFEALE--  204 (283)
T ss_pred             EEEEECcccccccc-CCCCcEEEEEecccHhHHHHHHHHHHhcCC-----CCceEEEEEecCCHHHhhHHH-HHHHHH--
Confidence            68899999999765 345789999999999999999999876411     136899999999999985544 445432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....++++++++|+..
T Consensus       205 --~~~~~~~~~~~~s~~~  220 (283)
T cd06188         205 --KEFPNFKYHPVLSEPQ  220 (283)
T ss_pred             --HHCCCeEEEEEECCCC
Confidence              2345788888777643

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.88  E-value=3.1e-21  Score=187.88  Aligned_cols=86  Identities=21%  Similarity=0.342  Sum_probs=65.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|.||||.+.......++++|||||+||||+++++++++..   +   ..++++|+|++|+.+++.+ .++++++.  
T Consensus        90 ~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~---~---~~~~i~l~~~~r~~~~~~~-~~el~~~~--  160 (235)
T cd06217          90 LLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDL---G---WPVPFRLLYSARTAEDVIF-RDELEQLA--  160 (235)
T ss_pred             EEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhc---C---CCceEEEEEecCCHHHhhH-HHHHHHHH--
Confidence            5889999999865433457899999999999999999998764   1   2467999999999999854 44444432  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        .+..++++++++|+.
T Consensus       161 --~~~~~~~~~~~~s~~  175 (235)
T cd06217         161 --RRHPNLHVTEALTRA  175 (235)
T ss_pred             --HHCCCeEEEEEeCCC
Confidence              234568888888764

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.88  E-value=3e-21  Score=199.52  Aligned_cols=86  Identities=22%  Similarity=0.423  Sum_probs=67.5

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|+||||.++......++++|||||+||||+++|+++++..   +   ..++|+|+|++|+.+++ +++++++++.  
T Consensus       187 ~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~---~---~~~~i~l~~g~r~~~dl-~~~e~l~~~~--  257 (339)
T PRK07609        187 ILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAK---G---IQRPVTLYWGARRPEDL-YLSALAEQWA--  257 (339)
T ss_pred             EEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhc---C---CCCcEEEEEecCChHHh-ccHHHHHHHH--
Confidence            5889999999976544567899999999999999999999864   1   24579999999999997 4555555432  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        .+..+++++.++++.
T Consensus       258 --~~~~~~~~~~~~s~~  272 (339)
T PRK07609        258 --EELPNFRYVPVVSDA  272 (339)
T ss_pred             --HhCCCeEEEEEecCC
Confidence              234578888888874

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=99.87  E-value=4.3e-21  Score=202.08  Aligned_cols=86  Identities=17%  Similarity=0.300  Sum_probs=67.2

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|.||||.+..+....+++|||||||||||+++|+++++.+.      ..++|+|+|++|+.+++.+ .++++++.  
T Consensus       244 ~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~eL~~l~--  314 (399)
T PRK13289        244 VLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHAARNGGVHAF-RDEVEALA--  314 (399)
T ss_pred             EEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEEeCChhhchH-HHHHHHHH--
Confidence            58899999998765445678999999999999999999987641      2468999999999999854 55555542  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        ....+++++.++++.
T Consensus       315 --~~~~~~~~~~~~s~~  329 (399)
T PRK13289        315 --ARHPNLKAHTWYREP  329 (399)
T ss_pred             --HhCCCcEEEEEECCC
Confidence              244578888888754

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.87  E-value=3.7e-21  Score=198.77  Aligned_cols=84  Identities=12%  Similarity=0.220  Sum_probs=63.1

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|.||+|.|.......++++|||||+||||+++|+++++..   +   ..++|+|+|++|+.+++.+.+ +++++.  
T Consensus        94 ~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~---~---~~~~v~l~y~~r~~~~~~~~~-el~~l~--  164 (332)
T PRK10684         94 YLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKN---R---PQADVQVIFNVRTPQDVIFAD-EWRQLK--  164 (332)
T ss_pred             EEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhc---C---CCCCEEEEEeCCChHHhhhHH-HHHHHH--
Confidence            6889999999875544557899999999999999999998764   1   246899999999999986554 444432  


Q ss_pred             cccCCCceEEEEEEc
Q 009819          302 FFSDKLNLETFIYVT  316 (524)
Q Consensus       302 ~~~~~~~l~I~IyVT  316 (524)
                        .+..+++++++.+
T Consensus       165 --~~~~~~~~~~~~~  177 (332)
T PRK10684        165 --QRYPQLNLTLVAE  177 (332)
T ss_pred             --HHCCCeEEEEEec
Confidence              2344566665544

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=99.87  E-value=2.1e-20  Score=190.14  Aligned_cols=88  Identities=24%  Similarity=0.464  Sum_probs=66.6

Q ss_pred             EEEEeCcccCCCCC-ccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~-~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|+||||.++.. ....++++||||||||||+++|+++++.+.     ...++|+|+|++|+.+++.+.+ +++++. 
T Consensus        90 ~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~-----~~~~~v~l~~~~r~~~d~~~~d-eL~~l~-  162 (289)
T PRK08345         90 IVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR-----WKYGNITLIYGAKYYEDLLFYD-ELIKDL-  162 (289)
T ss_pred             EEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC-----CCCCcEEEEEecCCHHHhhHHH-HHHHHH-
Confidence            58899999985432 223468999999999999999999987641     1246899999999999986544 444432 


Q ss_pred             CcccCCCceEEEEEEcCCC
Q 009819          301 PFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~  319 (524)
                         ....+++++.++++++
T Consensus       163 ---~~~~~~~~~~~~s~~~  178 (289)
T PRK08345        163 ---AEAENVKIIQSVTRDP  178 (289)
T ss_pred             ---hcCCCEEEEEEecCCC
Confidence               2456799999998754

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=99.86  E-value=6e-20  Score=176.32  Aligned_cols=66  Identities=21%  Similarity=0.325  Sum_probs=53.1

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  297 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e  297 (524)
                      ++.|+||||.+.... ..++++|||||+||||+++|++++.+.        .++++++|++|+.+++.+.+ ++++
T Consensus        82 ~v~i~gP~g~f~~~~-~~~~~v~ia~GtGiap~~~il~~~~~~--------~~~v~l~~~~r~~~~~~~~~-~l~~  147 (211)
T cd06185          82 ELEVSAPRNLFPLDE-AARRHLLIAGGIGITPILSMARALAAR--------GADFELHYAGRSREDAAFLD-ELAA  147 (211)
T ss_pred             EEEEcCCccCCcCCC-CCCcEEEEeccchHhHHHHHHHHHHhC--------CCCEEEEEEeCCCcchhHHH-HHhh
Confidence            588999999986543 457899999999999999999998653        24799999999999886544 3443

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.85  E-value=1.7e-20  Score=194.89  Aligned_cols=85  Identities=24%  Similarity=0.379  Sum_probs=66.3

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.++... ..++++|||||+||||+++|+++++.+   +   ..++++|+|++|+.+++.+.++ ++++.  
T Consensus       193 ~v~i~gP~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~---~---~~~~v~l~~g~r~~~dl~~~~e-l~~~~--  262 (340)
T PRK11872        193 EILFEAPLGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQ---G---CSPPVHLYYGVRHAADLCELQR-LAAYA--  262 (340)
T ss_pred             EEEEEcCcceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHc---C---CCCcEEEEEecCChHHhccHHH-HHHHH--
Confidence            588999999997643 447899999999999999999998764   1   2357999999999999865544 44432  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        ....+++++.++++.
T Consensus       263 --~~~~~~~~~~~~s~~  277 (340)
T PRK11872        263 --ERLPNFRYHPVVSKA  277 (340)
T ss_pred             --HHCCCcEEEEEEeCC
Confidence              244678888888754

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.85  E-value=4.1e-20  Score=191.94  Aligned_cols=88  Identities=19%  Similarity=0.264  Sum_probs=64.8

Q ss_pred             EEEEeCcccCCCCCcc--ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819          222 TASVEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~--~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell  299 (524)
                      +|.|.||+|.+..+..  ..++++|||||+||||+++|+++++.+   +   ..++|+|+|++|+.+++.+.++ ++++.
T Consensus        90 ~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~---~---~~~~v~l~~~~r~~~d~~~~~e-l~~l~  162 (352)
T TIGR02160        90 TLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA---E---PRSTFTLVYGNRRTASVMFAEE-LADLK  162 (352)
T ss_pred             EEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc---C---CCceEEEEEEeCCHHHHHHHHH-HHHHH
Confidence            5789999999865432  247899999999999999999998764   1   1468999999999999865544 44432


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                      +   ....+++++.++++..
T Consensus       163 ~---~~~~~~~~~~~~s~~~  179 (352)
T TIGR02160       163 D---KHPQRFHLAHVLSREP  179 (352)
T ss_pred             H---hCcCcEEEEEEecCCC
Confidence            1   1122578877777643

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=99.85  E-value=5.4e-20  Score=180.08  Aligned_cols=87  Identities=24%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             EEEEeCcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      ++.|.||+|.+..... .+++++|||||+||||+++++++++...      ..++++|+|++|+.+++.+ .++++++.+
T Consensus        90 ~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~~  162 (241)
T cd06214          90 TLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE------PASRVTLVYGNRTEASVIF-REELADLKA  162 (241)
T ss_pred             EEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC------CCCcEEEEEEeCCHHHhhH-HHHHHHHHH
Confidence            5789999999876544 4789999999999999999999987641      1457999999999999854 445555421


Q ss_pred             CcccCCCceEEEEEEcCC
Q 009819          301 PFFSDKLNLETFIYVTRE  318 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~  318 (524)
                         ....+++++.++|+.
T Consensus       163 ---~~~~~~~~~~~~~~~  177 (241)
T cd06214         163 ---RYPDRLTVIHVLSRE  177 (241)
T ss_pred             ---hCcCceEEEEEecCC
Confidence               122367777777653

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=99.85  E-value=8.1e-20  Score=181.38  Aligned_cols=67  Identities=25%  Similarity=0.467  Sum_probs=53.6

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  297 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e  297 (524)
                      +|.|+||||..+......++++|||||+||||+++|++++...        .++++|+|++|+.+++.+.+ ++++
T Consensus        81 ~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~~~-eL~~  147 (246)
T cd06218          81 ELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--------GIKVTVLLGFRSADDLFLVE-EFEA  147 (246)
T ss_pred             EEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--------CCceEEEEEccchhhhhhHH-HHHh
Confidence            6889999997544333568999999999999999999998763        25799999999999975544 4444

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=99.83  E-value=1.5e-19  Score=180.13  Aligned_cols=121  Identities=21%  Similarity=0.380  Sum_probs=81.0

Q ss_pred             EEEEeCcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      ++.|+||||.++.... .++++||||||+||||+++|+++++.+.     ...++++|+|++|+.+++.+ .+.++++. 
T Consensus        80 ~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~-----~~~~~i~Li~~~r~~~~~~~-~~~L~~l~-  152 (253)
T cd06221          80 TVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNR-----EDYGKVTLLYGARTPEDLLF-KEELKEWA-  152 (253)
T ss_pred             EEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhcc-----ccCCcEEEEEecCChHHcch-HHHHHHHH-
Confidence            5889999999654322 5689999999999999999999998641     12468999999999999854 55555543 


Q ss_pred             CcccCCCceEEEEEEcCCCCC-CCcccccccccccccCCCCCCCceeeeeCCCCch
Q 009819          301 PFFSDKLNLETFIYVTRETEP-PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV  355 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~~~-~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~  355 (524)
                         .. .++++++++++..+. ....+.+.. .+......+ .....++||+..++
T Consensus       153 ---~~-~~~~~~~~~s~~~~~~~~~~g~v~~-~l~~~~~~~-~~~~vyicGp~~mv  202 (253)
T cd06221         153 ---KR-SDVEVILTVDRAEEGWTGNVGLVTD-LLPELTLDP-DNTVAIVCGPPIMM  202 (253)
T ss_pred             ---hc-CCeEEEEEeCCCCCCccCCccccch-hHHhcCCCc-CCcEEEEECCHHHH
Confidence               23 578888888865431 111222221 122111122 34568999998743

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=99.83  E-value=7e-19  Score=174.74  Aligned_cols=65  Identities=22%  Similarity=0.493  Sum_probs=52.6

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHH
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  294 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~el  294 (524)
                      ++.|+||||..+......++++|||||+||||++++++++..+        .++++|+|++|+.+++.+.+++
T Consensus        85 ~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~~~el  149 (250)
T PRK00054         85 ELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK--------GVEVTTVLGARTKDEVIFEEEF  149 (250)
T ss_pred             EEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc--------CCcEEEEEEcCCHHHhhhHHHH
Confidence            6889999998543323567999999999999999999998753        3479999999999998654443

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=99.82  E-value=5.2e-19  Score=175.94  Aligned_cols=87  Identities=24%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             EEEEeCcccCCCC-Ccc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819          222 TASVEGPYGHEVP-YHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPYG~~~~-~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell  299 (524)
                      +|.|.||+|+++. +.. ..++++||||||||||+++|++++...   +   ..++++|+|++|+.+++.+ .++++++.
T Consensus        87 ~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~---~---~~~~v~l~~g~r~~~d~~~-~~el~~l~  159 (248)
T PRK10926         87 EVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDL---E---RFKNLVLVHAARYAADLSY-LPLMQELE  159 (248)
T ss_pred             EEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhh---C---CCCcEEEEEeCCcHHHHHH-HHHHHHHH
Confidence            6889998855433 322 336899999999999999999998643   1   2457999999999999855 44445532


Q ss_pred             CCcccCC-CceEEEEEEcCCC
Q 009819          300 CPFFSDK-LNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~-~~l~I~IyVTr~~  319 (524)
                      +    .. .+++++..+++++
T Consensus       160 ~----~~~~~~~v~~~~s~~~  176 (248)
T PRK10926        160 Q----RYEGKLRIQTVVSRET  176 (248)
T ss_pred             H----hCcCCEEEEEEECCCC
Confidence            1    22 4688888888743

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=99.82  E-value=2.8e-19  Score=173.57  Aligned_cols=125  Identities=21%  Similarity=0.302  Sum_probs=84.2

Q ss_pred             EEEEeCcccCCCCCcccc-ccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYHLMY-ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~-~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      ++.|+||||.+....... +++||||||+||||+++++++++.+.     ...++|+|+|++|+.+++ ++.++++++..
T Consensus        86 ~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-----~~~~~i~l~~~~r~~~~~-~~~~~l~~~~~  159 (234)
T cd06183          86 TVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP-----EDKTKISLLYANRTEEDI-LLREELDELAK  159 (234)
T ss_pred             EEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc-----CcCcEEEEEEecCCHHHh-hhHHHHHHHHH
Confidence            588999999986543333 78999999999999999999987641     124689999999999987 45555555421


Q ss_pred             CcccCCCceEEEEEEcCCCC-CCCcccccccccccccCCC-CCCCceeeeeCCCCch
Q 009819          301 PFFSDKLNLETFIYVTRETE-PPLEEGELHKTMSSSIYPV-PSGCAMSVLVGTGNNV  355 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~-ps~~s~s~i~G~~s~~  355 (524)
                         ....++++++++|+.++ +....+.++.+++....+. +......++||+..++
T Consensus       160 ---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~  213 (234)
T cd06183         160 ---KHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMI  213 (234)
T ss_pred             ---hCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHH
Confidence               11357889888887543 2222333333333333322 2345678999998643

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=99.82  E-value=4.7e-19  Score=175.95  Aligned_cols=85  Identities=9%  Similarity=0.072  Sum_probs=61.2

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCc-hHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~-dl~wl~ell~ell~  300 (524)
                      +|.|.||.|..+......+++||||||+|||||++|+++++..   +    ..+++|+|++|+.+ ++.+ .++++++. 
T Consensus        92 ~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~---~----~~~~~l~~g~r~~~~d~~~-~~el~~~~-  162 (245)
T cd06200          92 SVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARA---G----RHRNWLLFGERQAAHDFFC-REELEAWQ-  162 (245)
T ss_pred             EEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c----CCCeEEEEecCCccccHhH-HHHHHHHH-
Confidence            6889998765444323457899999999999999999998754   1    24689999999984 7654 44555542 


Q ss_pred             CcccCCCceEEEEEEcCC
Q 009819          301 PFFSDKLNLETFIYVTRE  318 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~  318 (524)
                         .....++++++++++
T Consensus       163 ---~~~~~~~~~~~~s~~  177 (245)
T cd06200         163 ---AAGHLARLDLAFSRD  177 (245)
T ss_pred             ---HCCCcceEEEEEccC
Confidence               234567777777764

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.82  E-value=6.4e-19  Score=187.40  Aligned_cols=87  Identities=15%  Similarity=0.395  Sum_probs=66.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||+|.++.. ...++++|||||+||||+++|+++++.+.+     ..++++|+|++|+.+++.+.++ ++++.  
T Consensus       258 ~v~v~gP~G~f~~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~-----~~~~v~L~~g~r~~~d~~~~~e-l~~l~--  328 (409)
T PRK05464        258 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYVED-FDQLA--  328 (409)
T ss_pred             EEEEEccccCcEec-CCCceEEEEEeccChhHHHHHHHHHHhCCC-----CCceEEEEEecCCHHHhhHHHH-HHHHH--
Confidence            58899999999765 355789999999999999999998876421     2468999999999999865554 44432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....++++++.+++..
T Consensus       329 --~~~~~~~~~~~~s~~~  344 (409)
T PRK05464        329 --AENPNFKWHVALSDPL  344 (409)
T ss_pred             --HhCCCeEEEEEEcCCC
Confidence              2456788888777543

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.81  E-value=8e-19  Score=186.46  Aligned_cols=87  Identities=15%  Similarity=0.342  Sum_probs=66.3

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.|+||||.++.. ...++++|||||+||||+++|+++++.+.+     ..++++|+|++|+.+++.+.+ +++++.  
T Consensus       254 ~v~i~gP~G~f~l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~-----~~~~v~l~~g~R~~~dl~~~~-el~~l~--  324 (405)
T TIGR01941       254 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYQE-DFDQLE--  324 (405)
T ss_pred             EEEEEeccCCCeec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC-----CCCeEEEEEecCCHHHHhHHH-HHHHHH--
Confidence            58899999999764 345789999999999999999998775411     245799999999999986544 444432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....++++++++++..
T Consensus       325 --~~~~~~~~~~~~s~~~  340 (405)
T TIGR01941       325 --AENPNFVWHVALSDPQ  340 (405)
T ss_pred             --HhCCCeEEEEEeCCCC
Confidence              2456788888877643

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.81  E-value=2.3e-18  Score=169.22  Aligned_cols=61  Identities=25%  Similarity=0.578  Sum_probs=50.3

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN  293 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e  293 (524)
                      ++.|+||||..+..  .+++++|||||+||||+++|+++++.+         ++++|+|++|+.+++.+.++
T Consensus        73 ~v~i~gP~G~~f~~--~~~~~vliAgGtGitP~~sil~~~~~~---------~~i~l~~~~r~~~d~~~~~e  133 (233)
T cd06220          73 KLGIRGPYGNGFEL--VGGKVLLIGGGIGIAPLAPLAERLKKA---------ADVTVLLGARTKEELLFLDR  133 (233)
T ss_pred             EEEEECcCCCCccC--CCCeEEEEecCcChHHHHHHHHHHHhc---------CCEEEEEecCChHHChhHHH
Confidence            57899999984332  268999999999999999999998652         47999999999999865444

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=99.81  E-value=2e-18  Score=174.59  Aligned_cols=134  Identities=26%  Similarity=0.369  Sum_probs=109.4

Q ss_pred             eeEEEeecCCC-CccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHHHHhcCCCCCCCCC
Q 009819            2 WNCGIGPIKTY-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSKSESDSQVG   78 (524)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~~~~~~~~~~~~~~   78 (524)
                      |+..+.+.... ++|+||||+.|.++.-+...++-|||+|+|++. +.+.|.||+.  |..+..|.|.++..        
T Consensus        21 ~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~-~~~~isVk~~~~G~~S~~Lh~~lk~G--------   91 (266)
T COG1018          21 FSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDED-SLYRISVKREDGGGGSNWLHDHLKVG--------   91 (266)
T ss_pred             EEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCC-ceEEEEEEEeCCCcccHHHHhcCCCC--------
Confidence            44555544433 379999999999987777889999999999874 5899999986  78888888766433        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009819           79 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP  158 (524)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (524)
                                                                                                      
T Consensus        92 --------------------------------------------------------------------------------   91 (266)
T COG1018          92 --------------------------------------------------------------------------------   91 (266)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccc
Q 009819          159 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM  238 (524)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~  238 (524)
                                                                                    .+|.|.+|.|.|..+...
T Consensus        92 --------------------------------------------------------------d~l~v~~P~G~F~l~~~~  109 (266)
T COG1018          92 --------------------------------------------------------------DTLEVSAPAGDFVLDDLP  109 (266)
T ss_pred             --------------------------------------------------------------CEEEEecCCCCccCCCCC
Confidence                                                                          157789999999887655


Q ss_pred             cccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819          239 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN  293 (524)
Q Consensus       239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e  293 (524)
                      .++++|||||||||||+||++++...      .. .+|.|+|++|+.+++.|.++
T Consensus       110 ~~~~llla~G~GITP~lSml~~~~~~------~~-~~v~l~h~~R~~~~~af~de  157 (266)
T COG1018         110 ERKLLLLAGGIGITPFLSMLRTLLDR------GP-ADVVLVHAARTPADLAFRDE  157 (266)
T ss_pred             CCcEEEEeccccHhHHHHHHHHHHHh------CC-CCEEEEEecCChhhcchhhH
Confidence            56899999999999999999998875      12 67999999999999988765

>PRK05713 hypothetical protein; Provisional

Probab=99.81  E-value=5.9e-19  Score=181.09  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             EEEEeCcccCCCC-Ccc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819          222 TASVEGPYGHEVP-YHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPYG~~~~-~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell  299 (524)
                      +|.|.||+|.++. ... ..+++||||||+||||++||+++++++   +   ..++++|+|++|+.+++.+ .++++++.
T Consensus       173 ~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~---~---~~~~v~l~~g~r~~~d~~~-~~el~~l~  245 (312)
T PRK05713        173 LLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQ---G---HQGPIRLLHLARDSAGHYL-AEPLAALA  245 (312)
T ss_pred             EEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhc---C---CCCcEEEEEEcCchHHhhh-HHHHHHHH
Confidence            5779999986432 222 347899999999999999999998764   1   2457999999999999855 44555542


Q ss_pred             CCcccCCCceEEEEEE
Q 009819          300 CPFFSDKLNLETFIYV  315 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyV  315 (524)
                          ....++++++.+
T Consensus       246 ----~~~~~~~~~~~~  257 (312)
T PRK05713        246 ----GRHPQLSVELVT  257 (312)
T ss_pred             ----HHCCCcEEEEEE
Confidence                234456665444

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=99.81  E-value=1.8e-18  Score=177.56  Aligned_cols=92  Identities=21%  Similarity=0.255  Sum_probs=66.3

Q ss_pred             EEEEeCcccCCCCCc--cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819          222 TASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~--~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell  299 (524)
                      +|.|+||+|.++...  ...+++||||||+|||||+||+++++...... .....+++|+|++|+.+++.+ .++++++.
T Consensus       137 ~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~-~~~~~~v~L~~g~R~~~d~~~-~deL~~l~  214 (307)
T PLN03116        137 KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPA-FKFGGLAWLFLGVANSDSLLY-DDEFERYL  214 (307)
T ss_pred             EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhcccc-ccCCCcEEEEEecCCcccchH-HHHHHHHH
Confidence            689999999987532  23468999999999999999999987642100 001357999999999999855 44555542


Q ss_pred             CCcccCCC-ceEEEEEEcCCC
Q 009819          300 CPFFSDKL-NLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~-~l~I~IyVTr~~  319 (524)
                      +    ... +++++..+++..
T Consensus       215 ~----~~~~~~~~~~~~sr~~  231 (307)
T PLN03116        215 K----DYPDNFRYDYALSREQ  231 (307)
T ss_pred             H----hCCCcEEEEEEEccCC
Confidence            2    333 688888888653

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=99.81  E-value=3e-18  Score=173.90  Aligned_cols=92  Identities=20%  Similarity=0.281  Sum_probs=66.5

Q ss_pred             EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|.||+|.++... ...++++|||||+|||||++|+++++.+.... ....++++|+|++|+.+++.+ .++++++.+
T Consensus       117 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~-~~~~~~v~L~~g~r~~~d~~~-~~el~~l~~  194 (286)
T cd06208         117 DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHAD-YKFTGLAWLFFGVPNSDSLLY-DDELEKYPK  194 (286)
T ss_pred             EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc-cCCCCCEEEEEEecCccchhH-HHHHHHHHH
Confidence            688999999986543 23468999999999999999999987642100 012457999999999999754 444555432


Q ss_pred             CcccCC-CceEEEEEEcCCC
Q 009819          301 PFFSDK-LNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~-~~l~I~IyVTr~~  319 (524)
                          +. .++++++.+++++
T Consensus       195 ----~~~~~~~~~~~~sr~~  210 (286)
T cd06208         195 ----QYPDNFRIDYAFSREQ  210 (286)
T ss_pred             ----hCCCcEEEEEEEcCCC
Confidence                22 3688888888654

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=99.79  E-value=1.6e-18  Score=167.44  Aligned_cols=112  Identities=25%  Similarity=0.362  Sum_probs=75.9

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      ++.++||||.+..    .++++|||||+||||+++|+++++..   +   ..++++|+|++|+.+++.+ .++++++   
T Consensus        86 ~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~---~---~~~~v~l~~~~r~~~~~~~-~~el~~l---  151 (218)
T cd06196          86 TLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAK---G---KLEGNTLIFANKTEKDIIL-KDELEKM---  151 (218)
T ss_pred             EEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhC---C---CCceEEEEEecCCHHHHhh-HHHHHHh---
Confidence            5889999999743    25799999999999999999998864   1   2467999999999999854 4444443   


Q ss_pred             cccCCCceEEEEEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819          302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  354 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~  354 (524)
                           .+++++.+++++.......+.++.+++....+.  .....++||+..+
T Consensus       152 -----~~~~~~~~~s~~~~~~~~~g~~~~~~l~~~~~~--~~~~vyiCGp~~m  197 (218)
T cd06196         152 -----LGLKFINVVTDEKDPGYAHGRIDKAFLKQHVTD--FNQHFYVCGPPPM  197 (218)
T ss_pred             -----hcceEEEEEcCCCCCCeeeeEECHHHHHHhcCC--CCCEEEEECCHHH
Confidence                 135677777875443222344443333333221  1245788999763

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=99.78  E-value=1e-17  Score=178.80  Aligned_cols=87  Identities=15%  Similarity=0.289  Sum_probs=62.6

Q ss_pred             EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|.||||.++... ...+++||||||||||||++|++++......+   ...+++|+|++|+.+++.+++++ +++.+
T Consensus       249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~---~~~~v~L~~G~Rt~~dl~y~~eL-~~l~~  324 (411)
T TIGR03224       249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG---EGGKLMLFFGARTKEELPYFGPL-QKLPK  324 (411)
T ss_pred             EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC---CCCCEEEEEecCccccchHHHHH-HHHHh
Confidence            688999999966432 22468999999999999999999987642211   24689999999999999766654 44321


Q ss_pred             CcccCCCceEEEEEEcCC
Q 009819          301 PFFSDKLNLETFIYVTRE  318 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~  318 (524)
                            ..+++++.+++.
T Consensus       325 ------~~~~~~~~~sr~  336 (411)
T TIGR03224       325 ------DFIDINFAFSRT  336 (411)
T ss_pred             ------cCceEEEEeccC
Confidence                  124555555553

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.78  E-value=4.5e-18  Score=168.92  Aligned_cols=67  Identities=21%  Similarity=0.456  Sum_probs=54.0

Q ss_pred             EE-EEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhc
Q 009819          222 TA-SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  298 (524)
Q Consensus       222 ~V-~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~el  298 (524)
                      ++ .|+||||.++.. ..+++++|||||+||||+++|++++++.        .++++|+|++|+.+++.+ .++++++
T Consensus        80 ~v~~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~--------~~~v~l~~~~r~~~~~~~-~~el~~l  147 (248)
T cd06219          80 KIHDVVGPLGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEA--------GNRVITIIGARTKDLVIL-EDEFRAV  147 (248)
T ss_pred             EeeeeecCCCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHc--------CCeEEEEEEcCCHHHhhh-HHHHHhh
Confidence            46 699999998654 3467899999999999999999998753        257999999999999855 4444443

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=99.78  E-value=1.4e-17  Score=175.42  Aligned_cols=93  Identities=20%  Similarity=0.290  Sum_probs=66.6

Q ss_pred             EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      .|.|.||+|.++... ...+++||||||+|||||+++|++++....... ....+++|+|++|+.+++.+ .++++++.+
T Consensus       197 ~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~-~~~~~v~Lf~G~R~~~dlly-~dELe~l~~  274 (367)
T PLN03115        197 EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPTSSSLLY-KEEFEKMKE  274 (367)
T ss_pred             EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccc-cCCCcEEEEEccCCHHHhhH-HHHHHHHHH
Confidence            688999999986533 234689999999999999999998765421110 11357999999999998854 444555422


Q ss_pred             CcccCC-CceEEEEEEcCCCC
Q 009819          301 PFFSDK-LNLETFIYVTRETE  320 (524)
Q Consensus       301 ~~~~~~-~~l~I~IyVTr~~~  320 (524)
                          .. .+++++..++++++
T Consensus       275 ----~~p~~f~v~~a~SR~~~  291 (367)
T PLN03115        275 ----KAPENFRLDFAVSREQT  291 (367)
T ss_pred             ----hCCCCEEEEEEEcCCCc
Confidence                33 47999999997543

>PRK05802 hypothetical protein; Provisional

Probab=99.77  E-value=1.6e-17  Score=171.99  Aligned_cols=67  Identities=12%  Similarity=0.247  Sum_probs=51.8

Q ss_pred             EEEEeCcccCC--CCC---ccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH
Q 009819          222 TASVEGPYGHE--VPY---HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK  296 (524)
Q Consensus       222 ~V~VdGPYG~~--~~~---~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~  296 (524)
                      ++.|+||||+.  ...   ....++++|||||+||||+++++++++++        ..+|+|+|++|+.+++. +.++++
T Consensus       150 ~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~--------~~~v~li~g~r~~~~~~-~~~el~  220 (320)
T PRK05802        150 EILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSN--------GNKIIVIIDKGPFKNNF-IKEYLE  220 (320)
T ss_pred             EEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHc--------CCcEEEEEeCCCHHHHH-HHHHHH
Confidence            58899999753  221   12346899999999999999999999764        23799999999999984 455555


Q ss_pred             h
Q 009819          297 E  297 (524)
Q Consensus       297 e  297 (524)
                      +
T Consensus       221 ~  221 (320)
T PRK05802        221 L  221 (320)
T ss_pred             H
Confidence            4

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=99.77  E-value=8.6e-18  Score=170.34  Aligned_cols=112  Identities=21%  Similarity=0.322  Sum_probs=72.7

Q ss_pred             EE-EEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TA-SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V-~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      ++ .|.||||.++.. ..+++++|||||+||||++++++++.++        ..+++|+|++|+.+++.+.+++ +++. 
T Consensus        81 ~v~~i~GP~G~~~~~-~~~~~~llIaGGiGiaPl~~l~~~l~~~--------~~~v~l~~g~r~~~d~~~~~el-~~~~-  149 (281)
T PRK06222         81 SILDVVGPLGKPSEI-EKFGTVVCVGGGVGIAPVYPIAKALKEA--------GNKVITIIGARNKDLLILEDEM-KAVS-  149 (281)
T ss_pred             EEeeEEcCCCCCccc-CCCCeEEEEeCcCcHHHHHHHHHHHHHC--------CCeEEEEEecCCHHHhhcHHHH-HhhC-
Confidence            57 699999998754 3457899999999999999999998653        2479999999999998655544 3321 


Q ss_pred             CcccCCCceEEEEEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCCch
Q 009819          301 PFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV  355 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~  355 (524)
                          .    ++  +++.++.+....+.++. ++....+...+....++||+..++
T Consensus       150 ----~----~~--~v~~~d~~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~  193 (281)
T PRK06222        150 ----D----EL--YVTTDDGSYGRKGFVTD-VLKELLESGKKVDRVVAIGPVIMM  193 (281)
T ss_pred             ----C----eE--EEEcCCCCcCcccchHH-HHHHHhhcCCCCcEEEEECCHHHH
Confidence                1    11  23333332223333322 233333333323467999998643

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=99.76  E-value=8.3e-18  Score=165.89  Aligned_cols=67  Identities=28%  Similarity=0.464  Sum_probs=54.5

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  297 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e  297 (524)
                      ++.|+||||.++......++++|||||+||||+++|++++..+        .++++|+|++|+.+++.+ .+++++
T Consensus        80 ~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------~~~v~l~~~~r~~~d~~~-~~el~~  146 (243)
T cd06192          80 KLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------GNKVTVLAGAKKAKEEFL-DEYFEL  146 (243)
T ss_pred             EEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC--------CCeEEEEEecCcHHHHHH-HHHHHh
Confidence            5889999998866543468999999999999999999998753        358999999999999754 444443

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.76  E-value=2.1e-17  Score=166.60  Aligned_cols=92  Identities=15%  Similarity=0.121  Sum_probs=67.9

Q ss_pred             EEEEeCccc-CCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhcc
Q 009819          222 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPYG-~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell  299 (524)
                      .|.|.||+| .|..+....+++|||||||||||+++|+++++......  ....+++|+|++|+. +++.+ .+.++++.
T Consensus        97 ~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~--~~~~~v~l~~g~r~~~~d~~~-~del~~~~  173 (267)
T cd06182          97 KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG--KARGPAWLFFGCRNFASDYLY-REELQEAL  173 (267)
T ss_pred             EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc--ccCCCEEEEEeCCCCcccccH-HHHHHHHH
Confidence            688999999 77654433578999999999999999999988632111  124579999999999 88855 44455542


Q ss_pred             CCcccCCCceEEEEEEcCCCC
Q 009819          300 CPFFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~~  320 (524)
                          ....+++++..+++...
T Consensus       174 ----~~~~~~~~~~~~S~~~~  190 (267)
T cd06182         174 ----KDGALTRLDVAFSREQA  190 (267)
T ss_pred             ----hCCCcceEEEEEccCCC
Confidence                24457889888887543

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=99.75  E-value=4.1e-17  Score=163.96  Aligned_cols=119  Identities=16%  Similarity=0.190  Sum_probs=74.2

Q ss_pred             EEEEeCcccC-CCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~-~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|+||||. +..+....++++|||||+||||+++|+++++.+.     ...++++|+|++|+.+++.+. ++++++.+
T Consensus        83 ~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~-----~~~~~v~L~~g~r~~~~l~~~-~el~~~~~  156 (263)
T PRK08221         83 KLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP-----QEIKSLDLILGFKNPDDILFK-EDLKRWRE  156 (263)
T ss_pred             EEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHHhhHH-HHHHHHhh
Confidence            5889999998 4433334579999999999999999999987541     124589999999999998554 44555321


Q ss_pred             CcccCCCceEEEEEEcCCCC-CCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819          301 PFFSDKLNLETFIYVTRETE-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  354 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~  354 (524)
                             ++++++.+++... +....+.+.+.+.....+.+ +....++||+..+
T Consensus       157 -------~~~~~~~~~~~~~~~~~~~G~v~~~l~~~~~~~~-~~~~vylCGp~~m  203 (263)
T PRK08221        157 -------KINLILTLDEGEEGYRGNVGLVTKYIPELTLKDI-DNMQVIVVGPPIM  203 (263)
T ss_pred             -------cCcEEEEecCCCCCCccCccccChhhHhccCCCc-CCeEEEEECCHHH
Confidence                   1234444554332 12223333322111111111 2356899999864

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=99.75  E-value=2.5e-17  Score=170.83  Aligned_cols=128  Identities=13%  Similarity=0.181  Sum_probs=84.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|.||+|.+.......++++||||||||||+++|+++++++..........+|+|+|++|+.+++.+ .++++++.+ 
T Consensus       142 ~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~-~~eL~~La~-  219 (325)
T PTZ00274        142 KLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILL-KGLFDDLAR-  219 (325)
T ss_pred             EEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhH-HHHHHHHHH-
Confidence            588899988775443344789999999999999999999886521100012458999999999999854 445555422 


Q ss_pred             cccCCC-ceEEEEEEcCCCC---CCCcccccccccccccCCCCC-CCceeeeeCCCCc
Q 009819          302 FFSDKL-NLETFIYVTRETE---PPLEEGELHKTMSSSIYPVPS-GCAMSVLVGTGNN  354 (524)
Q Consensus       302 ~~~~~~-~l~I~IyVTr~~~---~~~~~~~i~~~~~~~~~P~ps-~~s~s~i~G~~s~  354 (524)
                         ... +++++..+++...   +....+.+++.++....+.+. .....++||+..+
T Consensus       220 ---~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~M  274 (325)
T PTZ00274        220 ---RYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQL  274 (325)
T ss_pred             ---hCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHH
Confidence               233 6888888886432   223345555554444444332 2346899999864

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=99.75  E-value=2.6e-17  Score=168.61  Aligned_cols=122  Identities=22%  Similarity=0.401  Sum_probs=83.3

Q ss_pred             EEEEeCcccCCCCCc---------------cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCc
Q 009819          222 TASVEGPYGHEVPYH---------------LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN  286 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~---------------~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~  286 (524)
                      +|.|+||+|.+....               ...++++|||||+||||+++|+++++.+.     ...++++|+|++|+.+
T Consensus       134 ~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~-----~~~~~i~liyg~r~~~  208 (300)
T PTZ00319        134 KIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNK-----EDRTKVFLVYANQTED  208 (300)
T ss_pred             EEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCC-----CCCceEEEEEecCCHH
Confidence            588999999884321               12357999999999999999999987641     1245899999999999


Q ss_pred             hHHHHHHHHHhccCCcccCCCceEEEEEEcCCCCC--CCcccccccccccccCCCCC------CCceeeeeCCCCc
Q 009819          287 ELSLLSNFYKESICPFFSDKLNLETFIYVTRETEP--PLEEGELHKTMSSSIYPVPS------GCAMSVLVGTGNN  354 (524)
Q Consensus       287 dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~~--~~~~~~i~~~~~~~~~P~ps------~~s~s~i~G~~s~  354 (524)
                      ++.+.+++. ++ +    ...+++++..++++...  ....+.+++.++....+...      +....++||+..+
T Consensus       209 dl~~~~eL~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp~~m  278 (300)
T PTZ00319        209 DILLRKELD-EA-A----KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGPPPM  278 (300)
T ss_pred             HhhHHHHHH-HH-h----hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEEEEECCHHH
Confidence            997766553 32 1    34578888888874322  22334555444444434222      2457899999863

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=99.73  E-value=1.3e-16  Score=162.50  Aligned_cols=81  Identities=15%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             EEEe-CcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCc-hHHHHHHHHHhccC
Q 009819          223 ASVE-GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC  300 (524)
Q Consensus       223 V~Vd-GPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~-dl~wl~ell~ell~  300 (524)
                      |.+. +|+|.|... ...++++|||||||||||++||++...         .++++|+|++|+.+ ++. ++++++++.+
T Consensus       139 v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~---------~~~v~L~~g~r~~~~d~~-~~~eL~~l~~  207 (289)
T cd06201         139 IKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAA---------RRPMHLYWGGRDPASDFL-YEDELDQYLA  207 (289)
T ss_pred             EEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhc---------cCCEEEEEEecCcccchH-HHHHHHHHHH
Confidence            4455 578887654 345789999999999999999987521         35799999999985 664 4555555432


Q ss_pred             CcccCCCceEEEEEEcCC
Q 009819          301 PFFSDKLNLETFIYVTRE  318 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~  318 (524)
                          ...+++++..+++.
T Consensus       208 ----~~~~~~~~~~~s~~  221 (289)
T cd06201         208 ----DGRLTQLHTAFSRT  221 (289)
T ss_pred             ----cCCCceEEEEECCC
Confidence                34456676666653

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=99.73  E-value=7.9e-17  Score=161.73  Aligned_cols=119  Identities=14%  Similarity=0.215  Sum_probs=73.3

Q ss_pred             EEEEeCcccCCC-CCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEV-PYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~-~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|+||||..+ .+....++++|||||+||||+++|+++++++.     ...++|+|+|++|+.+++.+.+ +++++..
T Consensus        81 ~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~-----~~~~~v~L~~~~r~~~~~~~~~-eL~~l~~  154 (261)
T TIGR02911        81 NLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP-----KEIKSLNLILGFKTPDDILFKE-DIAEWKG  154 (261)
T ss_pred             EEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHHhhHHH-HHHHHHh
Confidence            588999999943 33334578999999999999999999987641     1235899999999999985544 4445321


Q ss_pred             CcccCCCceEEEEEEcCCC-CCCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819          301 PFFSDKLNLETFIYVTRET-EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  354 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~-~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~  354 (524)
                           .  .++++.+.+.. .+....+.+.... ......+.+....++||+..+
T Consensus       155 -----~--~~~~~~~~~~~~~~~~~~g~v~~~l-~~~~~~~~~~~~v~lCGp~~m  201 (261)
T TIGR02911       155 -----N--INLTLTLDEAEEDYKGNIGLVTKYI-PELTLKDIEEVQAIVVGPPIM  201 (261)
T ss_pred             -----c--CcEEEEEcCCCCCCcCCeeccCHhH-HhccCCCccceEEEEECCHHH
Confidence                 1  23344444322 2222333333221 111111112346899999863

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.69  E-value=2.5e-16  Score=160.25  Aligned_cols=123  Identities=20%  Similarity=0.283  Sum_probs=104.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.++||.|.+..+...++++.|||||+||||+++++++++...     .+..+|+|+|++++.+|+ +++++++++.. 
T Consensus       139 ~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~-----~d~tki~lly~N~te~DI-Llr~eL~~la~-  211 (286)
T KOG0534|consen  139 TVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDP-----EDTTKISLLYANKTEDDI-LLREELEELAS-  211 (286)
T ss_pred             EEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCC-----CCCcEEEEEEecCCcccc-chHHHHHHHHh-
Confidence            69999999999877666899999999999999999999998762     236789999999999998 56666666533 


Q ss_pred             cccCCC-ceEEEEEEcCCC-CCCCcccccccccccccCCCCCC-CceeeeeCCCCc
Q 009819          302 FFSDKL-NLETFIYVTRET-EPPLEEGELHKTMSSSIYPVPSG-CAMSVLVGTGNN  354 (524)
Q Consensus       302 ~~~~~~-~l~I~IyVTr~~-~~~~~~~~i~~~~~~~~~P~ps~-~s~s~i~G~~s~  354 (524)
                         ++. +|+++.++++.. .++...+.++++|+....|.+++ .....+||+..+
T Consensus       212 ---~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m  264 (286)
T KOG0534|consen  212 ---KYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPM  264 (286)
T ss_pred             ---hCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHH
Confidence               444 899999999887 56778889999999999999888 688999999873

>PLN02252 nitrate reductase [NADPH]

Probab=99.69  E-value=2.7e-16  Score=181.26  Aligned_cols=123  Identities=20%  Similarity=0.308  Sum_probs=86.9

Q ss_pred             EEEEeCcccCCCCC----------ccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHH
Q 009819          222 TASVEGPYGHEVPY----------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL  291 (524)
Q Consensus       222 ~V~VdGPYG~~~~~----------~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl  291 (524)
                      +|.|.||+|.+...          ....++++|||||+||||+++||++++...     ...++|+|+|++|+.+++.+ 
T Consensus       731 ~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~-----~d~t~i~Liyg~Rt~~Dil~-  804 (888)
T PLN02252        731 TIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDP-----EDKTEMSLVYANRTEDDILL-  804 (888)
T ss_pred             EEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhcc-----CCCCcEEEEEEECCHHHhhH-
Confidence            68899999986321          112478999999999999999999998641     12468999999999999855 


Q ss_pred             HHHHHhccCCcccCC-CceEEEEEEcCCC--CCCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819          292 SNFYKESICPFFSDK-LNLETFIYVTRET--EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  354 (524)
Q Consensus       292 ~ell~ell~~~~~~~-~~l~I~IyVTr~~--~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~  354 (524)
                      .++++++.+    +. .+++++..+|+..  .+....+.++.+++....+.+.+....++||+..+
T Consensus       805 ~eEL~~la~----~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vyiCGPp~M  866 (888)
T PLN02252        805 REELDRWAA----EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLALMCGPPPM  866 (888)
T ss_pred             HHHHHHHHH----hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEEEeCCHHH
Confidence            445555432    23 5799988888753  33334555655555555544445677899999864

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.69  E-value=7.9e-16  Score=154.13  Aligned_cols=113  Identities=19%  Similarity=0.301  Sum_probs=79.5

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      .+.|+||||+++......+.+++||||+|++|++++++++.++.      ...+|+++|++|+.+++.+.+++ +++.. 
T Consensus        90 ~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~------~~~~V~~~~G~~~~~dl~~~~el-~~~~~-  161 (252)
T COG0543          90 KIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG------DANKVTLLYGARTAKDLLLLDEL-EELAE-  161 (252)
T ss_pred             EEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC------CCceEEEEEeccChhhcccHHHH-HHhhc-
Confidence            48999999999887545556999999999999999999998751      24689999999999999655544 44321 


Q ss_pred             cccCCCceEEEEEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCC
Q 009819          302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGN  353 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s  353 (524)
                         +    ++++.++  +.+....+.++.+.+..+...  +.....+||+.-
T Consensus       162 ---~----~~~~~~~--~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp~~  202 (252)
T COG0543         162 ---K----EVHPVTD--DGWKGRKGFVTTDVLKELLDL--EVDDVYICGPPA  202 (252)
T ss_pred             ---C----cEEEEEC--CCCCccCcceeHHHHhhhccc--cCCEEEEECCHH
Confidence               1    4444443  555555555544444333322  446788999975

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.63  E-value=4e-15  Score=169.48  Aligned_cols=64  Identities=20%  Similarity=0.440  Sum_probs=53.4

Q ss_pred             EE-EEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHH
Q 009819          222 TA-SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  294 (524)
Q Consensus       222 ~V-~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~el  294 (524)
                      .+ .|.||||.++... ..++++|||||+||||+++++++++++        ..+++++|++|+.+++.+.+++
T Consensus        81 ~v~~v~GP~G~~~~~~-~~~~~llvaGG~GiaPl~~l~~~l~~~--------~~~v~l~~g~r~~~~l~~~~el  145 (752)
T PRK12778         81 YITDVVGPLGNPSEIE-NYGTVVCAGGGVGVAPMLPIVKALKAA--------GNRVITILGGRSKELIILEDEM  145 (752)
T ss_pred             EeCeEeCCCCCCccCC-CCCeEEEEECCEeHHHHHHHHHHHHHC--------CCeEEEEeccCCHHHhhhHHHH
Confidence            57 6999999997643 357899999999999999999998764        2479999999999998665544

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.63  E-value=1e-14  Score=169.73  Aligned_cols=64  Identities=20%  Similarity=0.413  Sum_probs=51.3

Q ss_pred             EE-EEeCcccCCCCCcc--ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819          222 TA-SVEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN  293 (524)
Q Consensus       222 ~V-~VdGPYG~~~~~~~--~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e  293 (524)
                      .+ .|.||+|.++....  ..++++|||||+||||+++|+++++++        ..+|+|+|++|+.+++.+.++
T Consensus       730 ~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~--------g~~V~li~G~Rs~edl~~~de  796 (944)
T PRK12779        730 AFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRL--------GNHVTLISGFRAKEFLFWTGD  796 (944)
T ss_pred             EEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHC--------CCCEEEEEEeCCHHHhhhHHH
Confidence            57 49999999864321  236899999999999999999988764        247999999999988866543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.61  E-value=1.6e-14  Score=169.11  Aligned_cols=61  Identities=16%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             EEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHH
Q 009819          224 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN  293 (524)
Q Consensus       224 ~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~e  293 (524)
                      .+.||||.++... .++++||||||+||||+++|++++.+.        ..+++++|++|+.+++.+.++
T Consensus        85 ~v~GPlG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~--------g~~v~li~g~R~~~~l~~~de  145 (1006)
T PRK12775         85 DFVGPLGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEA--------GARTTGIIGFRNKDLVFWEDK  145 (1006)
T ss_pred             eeecCCCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhC--------CCcEEEEEeCCChHHcccHHH
Confidence            6999999886542 457899999999999999999988654        246999999999988755444

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=99.60  E-value=7e-17  Score=141.36  Aligned_cols=56  Identities=30%  Similarity=0.701  Sum_probs=0.0

Q ss_pred             CccCCCcEEEEEeCCCC--CccccceEeEecCCCCCCeEEEEEEeeCchHHHHHHHHhcC
Q 009819           13 LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK   70 (524)
Q Consensus        13 ~~~~~~~~~~~~~~~~s--~~~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~~~~~~   70 (524)
                      ++|+||||+||+++.++  .+|||||||+|+|+  ++.++|+||..|+||++|++.+...
T Consensus        28 ~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~g~~T~~L~~~~~~~   85 (105)
T PF08022_consen   28 FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKARGGWTKRLYEHLSES   85 (105)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeCCCchHHHHHHHhhh
Confidence            99999999999999999  45999999999987  4899999999999999999988765

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.58  E-value=7.1e-14  Score=137.76  Aligned_cols=57  Identities=18%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchH
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL  288 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl  288 (524)
                      +|.|.||+|.++... ..+++||||||+||||+++|++++..         ..+++++|++|+.+++
T Consensus       104 ~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~---------~~~~~~~~~~~~~~d~  160 (235)
T cd06193         104 TLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPA---------DARGTALIEVPDAADE  160 (235)
T ss_pred             EEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCC---------CCeEEEEEEECCHHHc
Confidence            699999999997643 45789999999999999999997743         1479999999998665

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.54  E-value=7.9e-14  Score=165.70  Aligned_cols=125  Identities=17%  Similarity=0.224  Sum_probs=83.8

Q ss_pred             EEEEeCcccCC----------CCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHH
Q 009819          222 TASVEGPYGHE----------VPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL  291 (524)
Q Consensus       222 ~V~VdGPYG~~----------~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl  291 (524)
                      +|.|.||+|.+          .......++++|||||+||||+++||++++++..   ....++|+|+|++|+.+++.+.
T Consensus      1004 ~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~---~~~~~~i~Llyg~r~~~dl~~~ 1080 (1167)
T PTZ00306       1004 SVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY---VDSIESIRLIYAAEDVSELTYR 1080 (1167)
T ss_pred             EEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc---cCCCceEEEEEEeCCHHHhhHH
Confidence            57777887732          1122234789999999999999999999886410   0124689999999999999654


Q ss_pred             HHHHHhccCCcccCC-CceEEEEEEcCCCC-CCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819          292 SNFYKESICPFFSDK-LNLETFIYVTRETE-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  354 (524)
Q Consensus       292 ~ell~ell~~~~~~~-~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~  354 (524)
                      + +++++.+    +. .+|++++.+++..+ +....+.+...++.++.+.+......++||+..+
T Consensus      1081 ~-eL~~l~~----~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~m 1140 (1167)
T PTZ00306       1081 E-LLESYRK----ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVM 1140 (1167)
T ss_pred             H-HHHHHHH----HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHH
Confidence            4 4455421    23 36999988886432 2233455555555566554545567899999763

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.53  E-value=2.3e-13  Score=143.78  Aligned_cols=91  Identities=16%  Similarity=0.132  Sum_probs=65.5

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell~  300 (524)
                      +|.|.||+|.|.......+++||||||+|||||++++++.....+.+  ....++.|+|++|+. +++ .+.++++++.+
T Consensus       213 ~v~v~~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~--~~~~~~~L~~G~R~~~~d~-~y~~el~~~~~  289 (382)
T cd06207         213 RVTVFIKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG--PEIGPVLLYFGCRHEDKDY-LYKEELEEYEK  289 (382)
T ss_pred             EEEEEEECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC--ccCCCEEEEECCCCCCccc-cHHHHHHHHHh
Confidence            57888999988654333578999999999999999999876532211  125689999999998 676 45555555432


Q ss_pred             CcccCCCceEEEEEEcCCC
Q 009819          301 PFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~  319 (524)
                          ....+++++..++++
T Consensus       290 ----~~~~~~~~~a~Srd~  304 (382)
T cd06207         290 ----SGVLTTLGTAFSRDQ  304 (382)
T ss_pred             ----CCCCceEEEEecCCC
Confidence                344577878777643

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=99.52  E-value=3.4e-13  Score=142.60  Aligned_cols=91  Identities=18%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             eEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhcc
Q 009819          221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  299 (524)
Q Consensus       221 l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell  299 (524)
                      +.+.+.+|+|.|.......++++|||||+|||||++++++.......+  ....++.|+|++|+. +++. +.++++++.
T Consensus       212 v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~--~~~~~v~L~~G~R~~~~d~l-y~~el~~~~  288 (384)
T cd06206         212 IHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG--RKLAPALLFFGCRHPDHDDL-YRDELEEWE  288 (384)
T ss_pred             EEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC--CCcCCEEEEEeCCCCCcccc-hHHHHHHHH
Confidence            567788999998765444578999999999999999999876542211  123579999999999 6764 455555542


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                           +..++++++.+++++
T Consensus       289 -----~~~~~~l~~a~Sr~~  303 (384)
T cd06206         289 -----AAGVVSVRRAYSRPP  303 (384)
T ss_pred             -----HCCCeEEEEEecccC
Confidence                 234678888887643

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.50  E-value=2.5e-13  Score=151.45  Aligned_cols=85  Identities=12%  Similarity=0.127  Sum_probs=57.2

Q ss_pred             EEEEeCcc-cCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccC-CchHHHHHHHHHhcc
Q 009819          222 TASVEGPY-GHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPY-G~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs-~~dl~wl~ell~ell  299 (524)
                      +|.|.+|. |.|.......++++|||||+|||||++++++...+   +   ...++.|+|++|+ .+|+. +.++++.+.
T Consensus       432 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~---~---~~g~~~LffG~R~~~~D~l-y~~El~~~~  504 (597)
T TIGR01931       432 TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAED---G---AKGKNWLFFGNPHFTTDFL-YQVEWQNYL  504 (597)
T ss_pred             EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHc---c---CCCCEEEEECCCCCCcchh-HHHHHHHHH
Confidence            46666654 45654433446899999999999999999987654   1   1357999999999 66764 445555433


Q ss_pred             CCcccCCCceEEEEEEcC
Q 009819          300 CPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr  317 (524)
                      +    .....++++..+|
T Consensus       505 ~----~~~l~~l~~afSR  518 (597)
T TIGR01931       505 K----KGVLTKMDLAFSR  518 (597)
T ss_pred             H----cCCCceeEEEEec
Confidence            2    2233456566665

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=99.44  E-value=5.5e-12  Score=134.23  Aligned_cols=94  Identities=11%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             EEEEeC-cccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhc
Q 009819          222 TASVEG-PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES  298 (524)
Q Consensus       222 ~V~VdG-PYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~el  298 (524)
                      +|.+.| |.|.|..... ...+++|||||+|||||++++++.....+........++.|+|++|+. +|+. +.++++++
T Consensus       222 ~v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~-y~~El~~~  300 (398)
T cd06203         222 KVPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYL-FRDELEEF  300 (398)
T ss_pred             EEEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchh-HHHHHHHH
Confidence            466777 6777765433 347899999999999999999987653211101124679999999999 5764 45555554


Q ss_pred             cCCcccCCCceEEEEEEcCCCC
Q 009819          299 ICPFFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       299 l~~~~~~~~~l~I~IyVTr~~~  320 (524)
                      .+    ....+++++.++|++.
T Consensus       301 ~~----~~~~~~~~~a~SRd~~  318 (398)
T cd06203         301 LE----EGILTRLIVAFSRDEN  318 (398)
T ss_pred             HH----cCCCceEEEEECCCCC
Confidence            32    3445667777887543

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=99.39  E-value=2e-12  Score=135.80  Aligned_cols=88  Identities=16%  Similarity=0.108  Sum_probs=62.7

Q ss_pred             EEEEeCcc-cCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhcc
Q 009819          222 TASVEGPY-GHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPY-G~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell  299 (524)
                      +|.+.+|. |.|........+++|||||+|||||+|++++.+...      ...++.|+|++|+. +|+. +.++++++.
T Consensus       195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~D~~-y~~el~~~~  267 (360)
T cd06199         195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG------AKGKNWLFFGERHFATDFL-YQDELQQWL  267 (360)
T ss_pred             EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc------CCCcEEEEEcCCCCccchh-HHHHHHHHH
Confidence            46677644 566544334578999999999999999999876531      13579999999997 5764 455555543


Q ss_pred             CCcccCCCceEEEEEEcCCCC
Q 009819          300 CPFFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~~  320 (524)
                          .....++++..++|++.
T Consensus       268 ----~~~~~~~~~~a~Sr~~~  284 (360)
T cd06199         268 ----KDGVLTRLDTAFSRDQA  284 (360)
T ss_pred             ----HcCCCeEEEEEEccCCC
Confidence                23456788888888653

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>PRK06214 sulfite reductase; Provisional

Probab=99.32  E-value=1.6e-11  Score=135.12  Aligned_cols=89  Identities=17%  Similarity=0.215  Sum_probs=61.9

Q ss_pred             eeEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhc
Q 009819          220 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES  298 (524)
Q Consensus       220 ~l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~el  298 (524)
                      .+.+++.+++| |........++||||+|+|||||+++|++.+...      ...+++|+|++|+. +++ .+.++++++
T Consensus       365 ~V~v~i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~------~~g~~~LffG~R~~~~D~-ly~dEL~~l  436 (530)
T PRK06214        365 RVRVYVQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATK------APGRNWLFFGHQRSATDF-FYEDELNGL  436 (530)
T ss_pred             EEEEEecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc------CCCCeEEEEEecCChhhh-HHHHHHHHH
Confidence            35677778887 6544334468999999999999999999866531      13578999999764 465 455566654


Q ss_pred             cCCcccCCCceEEEEEEcCCCC
Q 009819          299 ICPFFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       299 l~~~~~~~~~l~I~IyVTr~~~  320 (524)
                      .+    .....++++..+|++.
T Consensus       437 ~~----~g~l~~l~~afSRd~~  454 (530)
T PRK06214        437 KA----AGVLTRLSLAWSRDGE  454 (530)
T ss_pred             HH----hCCceEEEEEEecCCC
Confidence            32    3345667778887653

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=99.23  E-value=2.5e-10  Score=121.95  Aligned_cols=92  Identities=14%  Similarity=0.080  Sum_probs=59.0

Q ss_pred             EEEeCcc-cCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhh--cCCCCCCceEEEEEeccCC-chHHHHHHHHHhc
Q 009819          223 ASVEGPY-GHEVPYHLMYENLILVAGGIGISPFLAILSDILHRIN--EGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES  298 (524)
Q Consensus       223 V~VdGPY-G~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~--~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~el  298 (524)
                      |.+.++. |.|........++||||||+|||||+++|++.....+  ........++.|+|++|+. +|+. +.++++++
T Consensus       229 v~v~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~l-y~~El~~~  307 (406)
T cd06202         229 VPCFVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDI-YKEETEEA  307 (406)
T ss_pred             EEEEEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccc-hHHHHHHH
Confidence            4444432 3454433344789999999999999999998654311  0001124689999999999 6664 45666654


Q ss_pred             cCCcccCCCceEEEEEEcCCC
Q 009819          299 ICPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       299 l~~~~~~~~~l~I~IyVTr~~  319 (524)
                      .+    ....+++++.++|++
T Consensus       308 ~~----~~~~~~~~~a~SR~~  324 (406)
T cd06202         308 KN----KGVLTEVYTALSREP  324 (406)
T ss_pred             HH----cCCCceEEEEEcCCC
Confidence            32    344567888888753

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.22  E-value=1.8e-10  Score=123.44  Aligned_cols=92  Identities=14%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell~  300 (524)
                      +|.+..|.|.|........++||||||+|||||++++++.+...+.+  ....++.|+|++|+. +++.+ .++++++.+
T Consensus       248 ~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~--~~~~~v~L~~G~R~~~~d~ly-~~el~~~~~  324 (416)
T cd06204         248 KVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG--KKVGPTLLFFGCRHPDEDFIY-KDELEEYAK  324 (416)
T ss_pred             eEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc--CccCCEEEEEcCCCCCcccch-HHHHHHHHH
Confidence            46666788887654434578999999999999999999875432111  124579999999998 67644 455555432


Q ss_pred             CcccCCCceEEEEEEcCCCC
Q 009819          301 PFFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~~  320 (524)
                          ...++++++.++|++.
T Consensus       325 ----~~~~~~l~~a~Sr~~~  340 (416)
T cd06204         325 ----LGGLLELVTAFSREQP  340 (416)
T ss_pred             ----cCCceEEEEEECcCCC
Confidence                3456888888887543

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=99.22  E-value=7.7e-11  Score=131.65  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=59.9

Q ss_pred             EEEEeCccc-CCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccC-CchHHHHHHHHHhcc
Q 009819          222 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPYG-~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs-~~dl~wl~ell~ell  299 (524)
                      +|.|.||.| .|........++||||+|+|||||+++|++....   +   ...+++|+|++|+ ..|+ +++++++++.
T Consensus       435 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~---~---~~~~~~LffG~R~~~~D~-lY~~El~~~~  507 (600)
T PRK10953        435 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD---G---APGKNWLFFGNPHFTEDF-LYQVEWQRYV  507 (600)
T ss_pred             EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHc---C---CCCCeEEEeeccCCccch-hHHHHHHHHH
Confidence            577778775 5544433457899999999999999999987654   1   1357999999998 5566 5566666643


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                      +    .....++++..+|++
T Consensus       508 ~----~g~l~~l~~afSRd~  523 (600)
T PRK10953        508 K----EGLLTRIDLAWSRDQ  523 (600)
T ss_pred             H----cCCcceEEEEECCCC
Confidence            2    222234666666643

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.15  E-value=1.6e-10  Score=99.41  Aligned_cols=48  Identities=33%  Similarity=0.639  Sum_probs=39.7

Q ss_pred             EEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhc
Q 009819          244 LVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  298 (524)
Q Consensus       244 LIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~el  298 (524)
                      |||||+|||||++|+++++.+ +     ..++|+|+|++|+.+++.+.++ ++++
T Consensus         1 lIagGtGIaP~~s~l~~~~~~-~-----~~~~v~l~~~~r~~~~~~~~~~-l~~~   48 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLER-N-----DNRKVTLFYGARTPEDLLFRDE-LEAL   48 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHH-T-----CTSEEEEEEEESSGGGSTTHHH-HHHH
T ss_pred             CeecceeHHHHHHHHHHHHHh-C-----CCCCEEEEEEEcccccccchhH-HHHH
Confidence            799999999999999999876 2     2578999999999999865444 4443

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.08  E-value=1.1e-09  Score=110.81  Aligned_cols=107  Identities=16%  Similarity=0.375  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCCCCCCCCCeeEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEe
Q 009819          202 GSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWA  281 (524)
Q Consensus       202 ~~~~~~~~~~~~~~~~p~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~  281 (524)
                      -.|+.-..+.-+.|+|.+  +|.|+||||.++... ....+|||+||.|.+|+.|.+-+++.+..     ..|++.|.|+
T Consensus       241 ~~PpG~mSSyi~sLKpGD--KvtisGPfGEfFaKd-tdaemvFigGGAGmapmRSHIfDqL~rlh-----SkRkis~WYG  312 (410)
T COG2871         241 DAPPGQMSSYIWSLKPGD--KVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPMRSHIFDQLKRLH-----SKRKISFWYG  312 (410)
T ss_pred             CCCccceeeeEEeecCCC--eEEEeccchhhhhcc-CCCceEEEecCcCcCchHHHHHHHHHhhc-----ccceeeeeec
Confidence            444443444555566544  799999999998754 45689999999999999999999888744     2579999999


Q ss_pred             ccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCCCCC
Q 009819          282 VKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEP  321 (524)
Q Consensus       282 vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~~  321 (524)
                      +|+..+. ++.+..+++.    ++.++|+.|+.+++....
T Consensus       313 ARS~rE~-fY~Ed~d~L~----ae~pNF~wH~aLSdplpE  347 (410)
T COG2871         313 ARSLREM-FYQEDFDQLQ----AENPNFHWHLALSDPLPE  347 (410)
T ss_pred             cchHHHh-HHHHHHHHHH----hhCCCcEEEEEecCCCCc
Confidence            9999998 4555556653    477899999999987653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.40  E-value=2.1e-06  Score=100.11  Aligned_cols=51  Identities=20%  Similarity=0.068  Sum_probs=39.2

Q ss_pred             ccCCCcEEEEEeCCCC-Cc--cccceEeEecCCCCCCeEEEEEEeeCchHHHHHH
Q 009819           14 RYNALSFFFLQVRELS-WL--QWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRD   65 (524)
Q Consensus        14 ~~~~~~~~~~~~~~~s-~~--~~~~~~~~S~P~~~~~~i~~~IK~~G~~~~~~~~   65 (524)
                      .++||||+.|++.+.+ .+  .-.||||++...+ ++.++|+++..|.-|+.|.+
T Consensus       818 ~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvVGkgT~~Ls~  871 (1028)
T PRK06567        818 NFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEVGKSTSLCKT  871 (1028)
T ss_pred             cCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEEChHHHHHhc
Confidence            5789999999986433 12  2358999998543 57899999999999987754

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=98.36  E-value=7.8e-06  Score=91.44  Aligned_cols=73  Identities=18%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr  317 (524)
                      ...+++|||.|+|||||.+++++-..+..      ..++.|++++|+.++=.++++++++...    .....++....+|
T Consensus       439 ~~~PiIMIG~GTGIAPFRafvq~r~~~~~------~gk~wLfFG~R~~~~DfLY~~Ewe~~~~----~G~~~~l~~AfSR  508 (587)
T COG0369         439 PETPIIMIGPGTGIAPFRAFVQERAANGA------EGKNWLFFGCRHFTEDFLYQEEWEEYLK----DGVLTRLDLAFSR  508 (587)
T ss_pred             CCCceEEEcCCCCchhHHHHHHHHHhccc------cCceEEEecCCCCccchhhHHHHHHHHh----cCCceeEEEEEee
Confidence            33789999999999999999998766421      2379999999994433366666666432    3346778888887


Q ss_pred             CCC
Q 009819          318 ETE  320 (524)
Q Consensus       318 ~~~  320 (524)
                      ++.
T Consensus       509 dq~  511 (587)
T COG0369         509 DQE  511 (587)
T ss_pred             cCC
Confidence            764

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=98.36  E-value=6.8e-07  Score=76.28  Aligned_cols=54  Identities=24%  Similarity=0.209  Sum_probs=43.3

Q ss_pred             CCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHH
Q 009819           11 TYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD   65 (524)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~   65 (524)
                      ..+.|.||||+.|+++.-+...+++||++|.+++ ++.++|+||..  |..|+.|.+
T Consensus        26 ~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~~~G~~S~~L~~   81 (99)
T PF00970_consen   26 QKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRYPNGRVSRYLHQ   81 (99)
T ss_dssp             TT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEECTTSHHHHHHHT
T ss_pred             cccccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEeccCCHHHHHHHh
Confidence            4589999999999999445568999999999864 56899999998  888887743

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=98.34  E-value=6.2e-06  Score=92.70  Aligned_cols=77  Identities=19%  Similarity=0.281  Sum_probs=57.9

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr  317 (524)
                      ...+++|||-|+|||||++.+++.....+.+...... +.|+++||+.++...+++++++..    ......++.+.++|
T Consensus       490 p~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~----~~~~l~~l~~A~SR  564 (645)
T KOG1158|consen  490 PSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYK----KAGILTRLDVAFSR  564 (645)
T ss_pred             CCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHH----hcCcchhheeeeec
Confidence            3468999999999999999999987765544322334 899999999998888888877642    23445667777777


Q ss_pred             CC
Q 009819          318 ET  319 (524)
Q Consensus       318 ~~  319 (524)
                      ++
T Consensus       565 eq  566 (645)
T KOG1158|consen  565 EQ  566 (645)
T ss_pred             cC
Confidence            65

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.86  E-value=4.7e-05  Score=85.63  Aligned_cols=6  Identities=33%  Similarity=0.274  Sum_probs=2.5

Q ss_pred             EeCccc
Q 009819          225 VEGPYG  230 (524)
Q Consensus       225 VdGPYG  230 (524)
                      +++|.-
T Consensus       622 ~e~~Mr  627 (1102)
T KOG1924|consen  622 PEVPMR  627 (1102)
T ss_pred             CCCccc
Confidence            444433

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=97.48  E-value=0.00013  Score=74.24  Aligned_cols=43  Identities=33%  Similarity=0.486  Sum_probs=32.5

Q ss_pred             EEEEeCcccCCCCCc---cccccEEEEecCcChHHHHHHHHHHHHH
Q 009819          222 TASVEGPYGHEVPYH---LMYENLILVAGGIGISPFLAILSDILHR  264 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~---~~~~~vVLIAGGiGITP~lSiL~~Ll~~  264 (524)
                      .|.++.|-|+|....   +..+.++|+|||+||||+++||+..+..
T Consensus       242 ~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C  287 (385)
T KOG3378|consen  242 IVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC  287 (385)
T ss_pred             eeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc
Confidence            355666777775432   2347899999999999999999987653

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=92.74  E-value=0.23  Score=54.68  Aligned_cols=69  Identities=19%  Similarity=0.360  Sum_probs=44.7

Q ss_pred             CeeEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH
Q 009819          219 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK  296 (524)
Q Consensus       219 ~~l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~  296 (524)
                      .++.+.|.  =|...........++||+-|+|||||++++++-+.+   +    ....-|+++||+.+.=.++++...
T Consensus       414 ~~i~~~v~--~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q---~----~~~~~lFfGCR~K~~Df~y~~eW~  482 (574)
T KOG1159|consen  414 DEIPIKVR--PGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ---G----DKENVLFFGCRNKDKDFLYEDEWT  482 (574)
T ss_pred             CeEEEEEe--cCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh---c----cCCceEEEecccCCccccccchhh
Confidence            44555554  244433322346899999999999999999987653   1    223478889999874333444433

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=86.24  E-value=2.2  Score=49.30  Aligned_cols=9  Identities=33%  Similarity=0.564  Sum_probs=4.6

Q ss_pred             CCccccCCC
Q 009819          182 GGISETEPQ  190 (524)
Q Consensus       182 ~~~~~~~~~  190 (524)
                      ++.++++|+
T Consensus       321 ~~~s~~~p~  329 (830)
T KOG1923|consen  321 SNLSSGAPQ  329 (830)
T ss_pred             CCCcCCCCC
Confidence            344556654

>PHA03378 EBNA-3B; Provisional

Probab=85.29  E-value=5.6  Score=45.66  Aligned_cols=14  Identities=21%  Similarity=0.339  Sum_probs=6.9

Q ss_pred             CCeeEEEEeCcccC
Q 009819          218 PTKITASVEGPYGH  231 (524)
Q Consensus       218 p~~l~V~VdGPYG~  231 (524)
                      |..+.+....+-|.
T Consensus       804 P~~~q~~~~~~~gq  817 (991)
T PHA03378        804 PTSMQLMPRAAPGQ  817 (991)
T ss_pred             CccceecCCCCccc
Confidence            34455555544444

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=83.18  E-value=16  Score=40.64  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=16.8

Q ss_pred             EEEEeCCCCCccccceEeEecCC
Q 009819           21 FFLQVRELSWLQWHPFSVSSSPL   43 (524)
Q Consensus        21 ~~~~~~~~s~~~~~~~~~~S~P~   43 (524)
                      .|-+++++++-+.|+|..+-.++
T Consensus       241 nf~h~~hVgwd~~~gf~~~~~p~  263 (569)
T KOG3671|consen  241 NFPHIPHVGWDEQVGFDSAPAPN  263 (569)
T ss_pred             CCccccccCCCcCCCcccCCCCC
Confidence            35667778888899999865444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	524
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	3e-18
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	3e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-12
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	9e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	2e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	7e-05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	8e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	8e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	9e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-04
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	1e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-04
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	3e-04
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	4e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	4e-04
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	5e-04
1rm1_C	286	Transcription initiation factor IIA large chain; y	8e-04

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186

 Score = 82.1 bits (202), Expect = 3e-18
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 225 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKS-CLPRNVLIVWAVK 283
           V+GP+G        YE ++LV  GIG++PF +IL  + ++     +    + +   W  +
Sbjct: 3   VDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCR 62

Query: 284 KSNELSLLSNFYK--ESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYP 338
            ++     ++  +  ES     ++   L   IY+T   E       +H      +  
Sbjct: 63  DTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVIT 119

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 416 LWERKSSARENYKDDSIEV-------DNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFK 468
           L   +S  +E      +         D +Q      H+D  K             RP++ 
Sbjct: 74  LQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWD 133

Query: 469 EIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 522
             F + + +  +  +GV +CGP +L  +++K+  S+S         F F+  +F
Sbjct: 134 NEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNS-ESGPRGVHFIFNKENF 186

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 28/205 (13%), Positives = 49/205 (23%), Gaps = 25/205 (12%)

Query: 76  QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 135
           +V P   +   +   P   P Q                    A       + +PP    P
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFM------------PPQDPAAAGMSYGQMGMPPQGAVP 54

Query: 136 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 195
             G   Q   P  +  H  +         +                  + +    + P  
Sbjct: 55  SMGQQ-QFLTPAQEQLHQQIDQATTSMNDMHLH------------NVPLVDPNAYMQPQV 101

Query: 196 PVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFL 255
           PV        Q+ P +      P+        P     P  L+ E    +       P L
Sbjct: 102 PVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPL 161

Query: 256 AILSDILHRINEGKSCLPRNVLIVW 280
            I  + +   +E  +  P  +    
Sbjct: 162 VIPPERMLVPSELSNASPDYIRSTL 186

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 66.4 bits (161), Expect = 1e-11
 Identities = 22/159 (13%), Positives = 33/159 (20%)

Query: 75  SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 134
                      P   P    PPQ P    M    + +    +  +      L     Q  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 135 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 194
                             P V P     P +P   G  + +    +A             
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 195 PPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEV 233
              P  Q  P         P+   T     +  P    +
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERML 169

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.0 bits (147), Expect = 6e-10
 Identities = 18/104 (17%), Positives = 22/104 (21%), Gaps = 11/104 (10%)

Query: 115 ISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMY 174
           +S     V P   +   Q A P   P Q   P             G PP    P      
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVP------ 54

Query: 175 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 218
                  G      P             +          PL+ P
Sbjct: 55  -----SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP 93

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 2/151 (1%)

Query: 75  SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 134
           + +       PP+G  P +   Q         +  +     S  + H+     V P    
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 135 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 194
            P  P     G P Q    P+  P    P     +       L  +        P     
Sbjct: 98  QPQVPVQM--GTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLT 155

Query: 195 PPVPPPQGSPPQRPPPSRHPLLPPTKITASV 225
            P PP    P +   PS      P  I +++
Sbjct: 156 LPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 35/140 (25%), Positives = 43/140 (30%), Gaps = 27/140 (19%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
           G P  VP P+       P +G              GG S+          V     A   
Sbjct: 113 GIPAGVPMPQAPAGLAGPVRGV-------------GGPSQQVMTPQGRGTVAAAAAAATA 159

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 197
                    PP    PP P  +G PPP        M               P +GPP  +
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM--------------RPPMGPPMGI 205

Query: 198 PPPQGSPPQRPPPSRHPLLP 217
           PP +G+P   PPP   P  P
Sbjct: 206 PPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 32/127 (25%), Positives = 38/127 (29%), Gaps = 34/127 (26%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
           GP   V  P+G                                  G P   PP +G PPP
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAA------------------TASIAGAPTQYPPGRGGPPP 177

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 197
                   P   GP P + PP GPP  +PP +G                T   + PP   
Sbjct: 178 PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG----------------TPMGMPPPGMR 221

Query: 198 PPPQGSP 204
           PPP G  
Sbjct: 222 PPPPGMR 228

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 24/104 (23%), Positives = 28/104 (26%), Gaps = 8/104 (7%)

Query: 123 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 182
           G P  VP PQ       P++  G P Q    P                            
Sbjct: 113 GIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR 172

Query: 183 GISETEPQVGPPPP--------VPPPQGSPPQRPPPSRHPLLPP 218
           G        G PPP        + PP G P   PP    P+  P
Sbjct: 173 GGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMP 216

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 77  VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPP 136
           VG P            V          +         G     P +G   P P   G PP
Sbjct: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193

Query: 137 PGPPLQEEGP--PPQGPHPPVPPPQGPPPPLPPPKGNL 172
              P        PP    P   PP G  PP P  +G L
Sbjct: 194 GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 20/98 (20%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 123 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 182
           G  + +P           L    PP   P P  PPP  P    PP           ++ G
Sbjct: 18  GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRG 77

Query: 183 --GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 218
             G   T           P   +P   PP +   +   
Sbjct: 78  PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 28/150 (18%), Positives = 36/150 (24%), Gaps = 27/150 (18%)

Query: 71  SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 130
           S           VP       P                   +  ++  +P V  P P PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAA-----------SDFLAALHPPVTVPDPAPP 51

Query: 131 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 190
           P  AP  G P  +           +  P GP      P                     Q
Sbjct: 52  PPPAPAAGNP-PDTVTGDSVLQRILRGPTGPGTTSLAP---------------AVRYGRQ 95

Query: 191 VGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 220
            GP  P   P  +    P    HP+  P  
Sbjct: 96  PGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 7e-05
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 7/83 (8%)

Query: 147 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP-PPVPPPQGSPP 205
                H     P+G    +P              +  ++   P V  P P  PPP     
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSA------SVTSAASDFLAALHPPVTVPDPAPPPPPAPAA 58

Query: 206 QRPPPSRHPLLPPTKITASVEGP 228
             PP +        +I     GP
Sbjct: 59  GNPPDTVTGDSVLQRILRGPTGP 81

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 7e-05
 Identities = 21/104 (20%), Positives = 29/104 (27%), Gaps = 13/104 (12%)

Query: 69  SKSESDSQVGPPPPVP----PPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGP 124
           + S+  + + PP  VP    PP   P   +PP     +         +          GP
Sbjct: 31  AASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD---------SVLQRILRGPTGP 81

Query: 125 PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 168
                 P       P  +     P      VP     P P P P
Sbjct: 82  GTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 22/100 (22%)

Query: 116 SEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP-PQGPHPPVPPPQGPPPPLPPPKGNLMY 174
           S+A P       +             Q   PP    P P   PPQG PP   PP+G    
Sbjct: 360 SDAAPS-ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGY--- 415

Query: 175 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 214
                             P    PPPQG+PPQ  PP+  P
Sbjct: 416 -----------------PPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 29/109 (26%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 59  WTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEA 118
           W      +   ++E D       P        P     Q      M + +          
Sbjct: 332 WVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP- 390

Query: 119 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 167
                PP    PPQG PP G P Q   P    P P   PPQG PP  PP
Sbjct: 391 -QGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 23/90 (25%), Positives = 25/90 (27%), Gaps = 18/90 (20%)

Query: 127 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 186
           P      A P     Q +                PP    PP                 +
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP----------------PQ 398

Query: 187 TEPQVGPPPPVPPPQGSPPQ--RPPPSRHP 214
             P  G PP   PPQG PPQ   PPP   P
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAP 428

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 26/107 (24%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 122 VGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 181
           V P    PP    PPP P ++ E  P   P PP   P     P P PK            
Sbjct: 40  VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK------------ 87

Query: 182 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 228
                    V      P     P +  P S      P ++T+S    
Sbjct: 88  ----PKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATA 130

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 24/149 (16%), Positives = 31/149 (20%), Gaps = 15/149 (10%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
           P  P+      P  + PPQ                      P V P     P    P   
Sbjct: 31  PAQPISVTMVTPADLEPPQAVQ---------------PPPEPVVEPEPEPEPIPEPPKEA 75

Query: 139 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 198
           P + E+  P   P P         P            +          T          P
Sbjct: 76  PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKP 135

Query: 199 PPQGSPPQRPPPSRHPLLPPTKITASVEG 227
               +   R      P  P       +EG
Sbjct: 136 VTSVASGPRALSRNQPQYPARAQALRIEG 164

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 21/105 (20%), Positives = 27/105 (25%), Gaps = 15/105 (14%)

Query: 124 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG 183
           P  P+      P    P Q   PPP+    P P P+  P P                   
Sbjct: 31  PAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAP-------------- 76

Query: 184 ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 228
               E     P P P P     ++P     P+            P
Sbjct: 77  -VVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAP 120

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 21/122 (17%), Positives = 26/122 (21%), Gaps = 17/122 (13%)

Query: 118 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 177
               + PP  V PP        P  E  P P    P V     P P   P          
Sbjct: 41  TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP-------- 92

Query: 178 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHL 237
                     +     P     P  S P  P  +  P    +    +        V    
Sbjct: 93  ---------VKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143

Query: 238 MY 239
             
Sbjct: 144 RA 145

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 11/84 (13%), Positives = 21/84 (25%)

Query: 137 PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPP 196
           P          P      +P PQ P PP      + + + +  +     + + +      
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 197 VPPPQGSPPQRPPPSRHPLLPPTK 220
            P     P  +            K
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKK 88

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 1/91 (1%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
           P          P PV       +             + +    +   L + P Q      
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAAL-GALALQPKQKQKRAQ 63

Query: 139 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 169
              ++  PP          P       P  +
Sbjct: 64  KKPKKTPPPKPKKTQKPKKPTQKKKSKPGKR 94

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 57/397 (14%), Positives = 102/397 (25%), Gaps = 141/397 (35%)

Query: 187 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVA 246
            + QV     V         R  P         K+  ++           L     +L+ 
Sbjct: 121 NDNQVFAKYNVS--------RLQPY-------LKLRQAL---------LELRPAKNVLID 156

Query: 247 GGIGISPFLAILSDILHRINEGKSCLPRNVL------------IVWA-VKKSNE----LS 289
           G +G                 GK+ +  +V             I W  +K  N     L 
Sbjct: 157 GVLGS----------------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 290 LLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLV 349
           +L     +    + S   +                + EL + + S  Y       + VL 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHS-----IQAELRRLLKSKPYEN----CLLVL- 250

Query: 350 GTGNNVWSGLYVISSTVGFIILV---------ALLNILYVNPFNIHSWWYKGL------- 393
               NV +     +  +   IL+          L      +    H      L       
Sbjct: 251 ---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKS 305

Query: 394 LFL-------------ACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV 440
           L L                     +   ++I             E+ +D     DN ++V
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL---SIIA------------ESIRDGLATWDNWKHV 350

Query: 441 GTMAHNDIRKKDTKSSTNILYGS--RPDFKE--IFGSTSK--------KWGHVDVGVIVC 488
                  I     +SS N+L  +  R  F    +F  ++          W  V       
Sbjct: 351 NCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------ 400

Query: 489 GPPSLQSSVAKEIRSHSLM-RECHDPIFHFHSHSFDL 524
              S    V  ++  +SL+ ++  +      S   +L
Sbjct: 401 --KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 15/97 (15%), Positives = 21/97 (21%), Gaps = 2/97 (2%)

Query: 116 SEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL-MY 174
           +     +  P P PPP  A  PG                  P   P  P P   G    +
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGAT-PGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 175 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS 211
            +L       +                G+        
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/171 (12%), Positives = 35/171 (20%), Gaps = 16/171 (9%)

Query: 79  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 138
           P PP   P         P  P          L A   + +        P  P +    P 
Sbjct: 15  PGPPRIAPPKLACRTPSPARP---------ALRAPASATSGSRKRARPPAAPGRDQARPP 65

Query: 139 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYEN-------LIVVAGGISETEPQV 191
              +      +   P  P     P    P +              L       + +E   
Sbjct: 66  ARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELAS 125

Query: 192 GPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENL 242
                          +            +     E P G + P +  +  L
Sbjct: 126 CLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHAL 176

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 26/172 (15%), Positives = 39/172 (22%), Gaps = 9/172 (5%)

Query: 68  LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 127
            S +    +          +   PP  P +   R      L L        +    P  P
Sbjct: 30  PSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL------SVDEVSSPSTP 83

Query: 128 VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 187
             P   A P      ++  P  G  P +   Q                 L      +  +
Sbjct: 84  EAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKAS 143

Query: 188 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMY 239
                      P     P+ P   + P        A    P G  +PY    
Sbjct: 144 AQD--AGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP-GLVLPYKYQV 192

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 13/99 (13%), Positives = 19/99 (19%), Gaps = 13/99 (13%)

Query: 115 ISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMY 174
           ++  N        +   +         + +  PP G      P  G      P       
Sbjct: 144 VTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPG------ 197

Query: 175 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 213
                               P  PPP     Q      H
Sbjct: 198 -------AVPGGDRFPGPAGPGGPPPPFPAGQTHHHHHH 229

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 15/58 (25%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 112 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG-PPPPLPPP 168
             G        GPP                +  G  P G   P P   G PPPP P  
Sbjct: 164 QSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAG 221

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 18/171 (10%), Positives = 31/171 (18%), Gaps = 25/171 (14%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNL------------------MYENLILVAGGISEAN 119
           G      P +      +        L                  M   L  V   +   +
Sbjct: 278 GRYVDGLPEDDPVLKTYDS---YGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQD 334

Query: 120 PHVGPP----LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYE 175
             V  P    +  P              +       H            L  P  +    
Sbjct: 335 TGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDV 394

Query: 176 NLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 226
              V+   +     Q                    S    LP  ++ A ++
Sbjct: 395 AASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD 445

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.2 bits (103), Expect = 9e-05
 Identities = 11/164 (6%), Positives = 25/164 (15%), Gaps = 28/164 (17%)

Query: 78  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 137
           G    +   E         +                     +              A   
Sbjct: 31  GANTELVSGESEHSTNEADKQN----------------EGEHARENKLEKAEGVATASET 74

Query: 138 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 197
             P   E    +                   +               +E +P+       
Sbjct: 75  ASPASNEAATTETAEAASAAKPEEKASEVVAETP------------SAEAKPKSDKETEA 122

Query: 198 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYEN 241
            P   +      P+        ++   V       +    +  N
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFN 166

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 12/118 (10%), Positives = 21/118 (17%), Gaps = 12/118 (10%)

Query: 117 EANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYEN 176
           E     G    VP   GA       + E    +                           
Sbjct: 15  ENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG------- 67

Query: 177 LIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 234
              VA       P           + +   +P           +  ++   P   +  
Sbjct: 68  ---VATASETASPASNEAATTETAEAASAAKPEEKASE--VVAETPSAEAKPKSDKET 120

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 225 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 284
           V+ P+G           +IL+AGG G S   +IL   L R         R++ I W  ++
Sbjct: 88  VDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALAR------NPNRDITIYWGGRE 141

Query: 285 SNEL 288
              L
Sbjct: 142 EQHL 145

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 14/82 (17%), Positives = 24/82 (29%)

Query: 139 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 198
              +   P P     P    Q  P P      + + +    V+  +     +   P P P
Sbjct: 8   MLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRP 67

Query: 199 PPQGSPPQRPPPSRHPLLPPTK 220
           PP+        P +     P +
Sbjct: 68  PPRQKKQAPKQPPKPKKPKPQE 89

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 8/103 (7%)

Query: 111 VAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 170
                +    + GP  P PP  GA P G P  ++   P+ P PP P              
Sbjct: 11  PGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATL 70

Query: 171 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 213
                +         + E         PPP G+   +    R 
Sbjct: 71  REHLRD--------IKAENTDANFYVCPPPTGATVVQFEQPRR 105

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 42.6 bits (98), Expect = 3e-04
 Identities = 23/153 (15%), Positives = 34/153 (22%), Gaps = 6/153 (3%)

Query: 53  IKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQ---GPVRNLMYENLI 109
           I                + E  S+           G      P          +   N  
Sbjct: 338 IGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNY 397

Query: 110 LVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ--EEGPPPQGPHPPVPPPQGP-PPPLP 166
           +  G  S  N      +PV P +       P          +  + P    + P PP  P
Sbjct: 398 VTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKP 457

Query: 167 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 199
                  YE    +         +  P PP   
Sbjct: 458 TAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 41.0 bits (94), Expect = 8e-04
 Identities = 22/123 (17%), Positives = 33/123 (26%), Gaps = 17/123 (13%)

Query: 47  YHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHP--PQGPVRNLM 104
           ++ +  IK+ G           + +       P  P         P       G +R   
Sbjct: 383 WYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIR--- 439

Query: 105 YENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPP 164
                      +   P V    P PP +   P  P  + E P    P  P    + P PP
Sbjct: 440 -----------AVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKE-PTPP 487

Query: 165 LPP 167
              
Sbjct: 488 TRL 490

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 11/66 (16%)

Query: 225 VEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 282
             GP+G    ++L  +   ++++AGG GI+PFL++L  +  + +E        V +V+ V
Sbjct: 197 FTGPFGS---FYLRDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE------HPVRLVFGV 247

Query: 283 KKSNEL 288
            +  +L
Sbjct: 248 TQDCDL 253

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 16/90 (17%)

Query: 240 ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 299
           E L ++A G  I P+L+IL               +N+++V A + + +LS     Y   +
Sbjct: 107 ETLWMLATGTAIGPYLSILRLGKDLDRF------KNLVLVHAARYAADLS-----YLPLM 155

Query: 300 CPF---FSDKLNLETFIYVTRETEPPLEEG 326
                 +  KL ++T   V+RET      G
Sbjct: 156 QELEKRYEGKLRIQTV--VSRETAAGSLTG 183

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 13/138 (9%), Positives = 26/138 (18%), Gaps = 22/138 (15%)

Query: 108 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 167
           + L A G                 +         + +   P  P               P
Sbjct: 74  ITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMP 133

Query: 168 --------------------PKGNLMYENLI--VVAGGISETEPQVGPPPPVPPPQGSPP 205
                                 G ++ E++   +  G             P      +  
Sbjct: 134 SVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTE 193

Query: 206 QRPPPSRHPLLPPTKITA 223
              P +R  +    +  A
Sbjct: 194 GEFPETREKMSGIRRAIA 211

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 194 PPPVPPPQGSPPQRPPPSR-----HPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGG 248
            PP             P         L P  K+   + GPYG +         ++ + GG
Sbjct: 109 TPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVM--MSGPYG-DFHIQDTDAEMLYIGGG 165

Query: 249 IGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNE 287
            G++P  A +  +   +  G     R V   +  +  NE
Sbjct: 166 AGMAPLRAQILHLFRTLKTG-----RKVSYWYGARSKNE 199

>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286

 Score = 40.7 bits (93), Expect = 8e-04
 Identities = 16/170 (9%), Positives = 34/170 (20%), Gaps = 5/170 (2%)

Query: 50  SVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLI 109
             L  +   W + L +  ++    D+Q                +  P         +   
Sbjct: 33  QTLQDLKNIWQKKLTETKVTTFSWDNQFNEGNINGVQNDLNFNLATPGVNSSEFNIKEEN 92

Query: 110 LVAGGISEANPHVGPPLP-----VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPP 164
               G+   N +    +P                           G        Q     
Sbjct: 93  TGNEGLILPNINSNNNIPHSGETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEV 152

Query: 165 LPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 214
            P  +  +   N+  V     E+E +          +    +        
Sbjct: 153 KPEIELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKL 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	524
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.92
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	99.92
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	99.91
1tvc_A	250	Methane monooxygenase component C, methane monooxy	99.9
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	99.9
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	99.9
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	99.89
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	99.89
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	99.89
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	99.89
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.88
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	99.88
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	99.87
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	99.87
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	99.87
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	99.87
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.86
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	99.86
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	99.85
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	99.85
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	99.85
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	99.85
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	99.83
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	99.8
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	99.8
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.68
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.65
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.52
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.52
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	99.52
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.46
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.43
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.41
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.38
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.36
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.36
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	82.31

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.92  E-value=5.3e-25  Score=203.46  Aligned_cols=183  Identities=22%  Similarity=0.451  Sum_probs=126.3

Q ss_pred             EEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcC-CCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          223 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEG-KSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       223 V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~-~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      |.|+||||.+..+...++++|||||||||||+++|+++++.+.+.+ .....++|+|+|++|+.+++.|+.++++++...
T Consensus         1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~   80 (186)
T 3a1f_A            1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ   80 (186)
T ss_dssp             CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred             CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence            3579999999765557889999999999999999999998763211 012367899999999999999888888775321


Q ss_pred             cc--cCCCceEEEEEEcCCCCCCCcccccccccccccCCCCCCCceeeeeCCCCchhhHHHHHHHHHHHHHHHHHhhhee
Q 009819          302 FF--SDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILY  379 (524)
Q Consensus       302 ~~--~~~~~l~I~IyVTr~~~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~~~~a~ilas~~gfl~~~g~l~~~~  379 (524)
                      ..  ....++++++|+|+....+...     .                                                
T Consensus        81 ~~~~~~~~~~~~~~~~t~~~~~~~~~-----~------------------------------------------------  107 (186)
T 3a1f_A           81 MQERNNAGFLSYNIYLTGWDESQANH-----F------------------------------------------------  107 (186)
T ss_dssp             HHHTTCTTSEEEEEEETTC-------------------------------------------------------------
T ss_pred             HhhccCCCeEEEEEEEcCCCCCcccc-----e------------------------------------------------
Confidence            00  0123799999999854311000     0                                                


Q ss_pred             eCCCCCchhhHHHHHHHHHHhhheeeccceeeeehhhhhhhhcccccCCCCcccccccccccccccccccccCCCccccc
Q 009819          380 VNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNI  459 (524)
Q Consensus       380 v~p~~~~s~~~~~~l~l~~m~~gV~v~g~~vi~~w~~~~~~~~~~~s~~~~~ie~~~p~~~~~~~~~~~~~~~L~~~~~V  459 (524)
                                         +           + -   |+..        .+.+                  +++  ...+
T Consensus       108 -------------------~-----------~-~---~~~~--------~~~~------------------~g~--~~~~  125 (186)
T 3a1f_A          108 -------------------A-----------V-H---HDEE--------KDVI------------------TGL--KQKT  125 (186)
T ss_dssp             -----------------------------------------------------------------------------CCE
T ss_pred             -------------------e-----------e-c---cccc--------cccC------------------CCC--cccc
Confidence                               0           0 0   0000        0000                  111  1467


Q ss_pred             ccCCCCChHHHHHhhhcccCCceEEEEEeCChhhHHHHHHHHHhccccccCCCceEEEEEeec
Q 009819          460 LYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF  522 (524)
Q Consensus       460 ~~G~RPdl~~I~~~~~~~~~~~~VGVfvCGP~sL~~~Va~~c~~~n~~~~~~~~~f~fHsEsF  522 (524)
                      ++| |||+..+++++.+.....++.||+|||.+|.++|+++|++.... ...+.+|+||+|+|
T Consensus       126 ~~g-R~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~~v~~~l~~~g~~-~~~~~~~~~~~E~F  186 (186)
T 3a1f_A          126 LYG-RPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSES-GPRGVHFIFNKENF  186 (186)
T ss_dssp             EES-CCCHHHHHHHHHHHSTTCEEEEEEESCHHHHHHHHHHHHHTCCC-STTCCEEEEECCCC
T ss_pred             ccC-CCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHHHHHHHHHHhhcc-CCCCCEEEEEeccC
Confidence            787 99999999988766555689999999999999999999997652 12335799999998

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=99.92  E-value=3.6e-24  Score=207.24  Aligned_cols=84  Identities=17%  Similarity=0.300  Sum_probs=66.2

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+... ..+++++|||||+||||+++|+++++.+   +   ..+ ++|+|++|+.+++.+.+++ +++.. 
T Consensus        98 ~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~---~---~~~-v~l~~~~r~~~~~~~~~el-~~l~~-  167 (243)
T 4eh1_A           98 SVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQ---N---KSG-VTYLYACNSAKEHTFAQET-AQLIA-  167 (243)
T ss_dssp             EEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHT---T---CCS-EEEEEEESSGGGCTTHHHH-HHHHH-
T ss_pred             EEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHc---C---CCe-EEEEEEeCChhhhhHHHHH-HHHHH-
Confidence            68899999999876 5678999999999999999999999875   1   134 9999999999998665544 44321 


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                         .. ++++++++++..
T Consensus       168 ---~~-~~~~~~~~s~~~  181 (243)
T 4eh1_A          168 ---QQ-GWMQQVWYRDES  181 (243)
T ss_dssp             ---HH-TCEEEEEESSCC
T ss_pred             ---hC-CeEEEEEEccCC
Confidence               22 688888887654

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=99.91  E-value=2.4e-24  Score=219.17  Aligned_cols=95  Identities=18%  Similarity=0.194  Sum_probs=69.5

Q ss_pred             EEEEeCcccCCCCCcc---ccccEEEEecCcChHHHHHHHHHHHHHhhc----CCCCCCceEEEEEeccCCchHHHHHHH
Q 009819          222 TASVEGPYGHEVPYHL---MYENLILVAGGIGISPFLAILSDILHRINE----GKSCLPRNVLIVWAVKKSNELSLLSNF  294 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~---~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~----~~~~~~rkV~LiW~vRs~~dl~wl~el  294 (524)
                      +|.|+||||.|.....   ..+++||||||||||||++||++++.+...    ......++++|+|++|+.+++ |+.++
T Consensus       150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~-~~~~e  228 (316)
T 3jqq_A          150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSI-LYLNE  228 (316)
T ss_dssp             EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGC-TTHHH
T ss_pred             EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHh-hcHHH
Confidence            5889999999866543   268999999999999999999998764211    001124789999999999998 55555


Q ss_pred             HHhccCCcccCCCceEEEEEEcCCCC
Q 009819          295 YKESICPFFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       295 l~ell~~~~~~~~~l~I~IyVTr~~~  320 (524)
                      ++++.+   ....++++++++|+.+.
T Consensus       229 L~~l~~---~~~~~~~~~~~~s~~~~  251 (316)
T 3jqq_A          229 LEYFQK---MYPNNINIHYVFSYKQN  251 (316)
T ss_dssp             HHHHHH---HCTTTEEEEEEEGGGCC
T ss_pred             HHHHHH---hCCCcEEEEEEECCCcc
Confidence            555432   11237999999998643

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=99.90  E-value=4.1e-23  Score=201.52  Aligned_cols=86  Identities=23%  Similarity=0.251  Sum_probs=66.9

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+......+++++|||||+||||+++|++++..+   +   ...+++|+|++|+.+++.+ .++++++.  
T Consensus       100 ~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~---~---~~~~v~l~~~~r~~~~~~~-~~el~~l~--  170 (250)
T 1tvc_A          100 VLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEW---T---APNETRIYFGVNTEPELFY-IDELKSLE--  170 (250)
T ss_dssp             EEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHH---T---CCSCEEEEEECSSSTTCCC-HHHHHHHH--
T ss_pred             EEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhc---C---CCceEEEEEEeCCHHHhhh-HHHHHHHH--
Confidence            5889999999987654568999999999999999999999875   1   2468999999999999844 44445432  


Q ss_pred             cccCCCceEEEEEEcCC
Q 009819          302 FFSDKLNLETFIYVTRE  318 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~  318 (524)
                        ....++++++++|+.
T Consensus       171 --~~~~~~~~~~~~s~~  185 (250)
T 1tvc_A          171 --RSMRNLTVKACVWHP  185 (250)
T ss_dssp             --HHSSSCEEEECCSSC
T ss_pred             --HhCCCeEEEEEeccC
Confidence              123568888877764

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=99.90  E-value=6.1e-23  Score=197.57  Aligned_cols=87  Identities=24%  Similarity=0.256  Sum_probs=68.0

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+......+++++|||||+||||+++|+++++.+   +   ..++++|+|++|+.+++.+.+ +++++.  
T Consensus        85 ~v~v~gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~---~---~~~~v~l~~~~r~~~~~~~~~-el~~l~--  155 (232)
T 1qfj_A           85 QIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALAR---N---PNRDITIYWGGREEQHLYDLC-ELEALS--  155 (232)
T ss_dssp             EEEEEEEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHH---C---TTCCEEEEEEESSGGGCTTHH-HHHHHH--
T ss_pred             EEEEeCCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhc---C---CCCcEEEEEeeCCHHHhhhHH-HHHHHH--
Confidence            5789999999977644578999999999999999999999875   1   246899999999999985544 444432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        .+..+++++.++++.+
T Consensus       156 --~~~~~~~~~~~~s~~~  171 (232)
T 1qfj_A          156 --LKHPGLQVVPVVEQPE  171 (232)
T ss_dssp             --HHCTTEEEEEEESSCC
T ss_pred             --HHCCCeEEEEEEcCCC
Confidence              1335788888887653

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=99.90  E-value=6.1e-23  Score=207.54  Aligned_cols=93  Identities=22%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|+||||.++... ..+++++|||||+|||||++||++++.+.... ....++++|+|++|+.+++.|.+ +++++.+
T Consensus       140 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~-~~~~~~v~L~~g~r~~~d~~~~~-el~~l~~  217 (310)
T 3vo2_A          140 DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHED-YKFSGLAWLFLGVPTSDSLLYKE-ELEKMKE  217 (310)
T ss_dssp             EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTT-CCCCSEEEEEEEESSGGGCCSHH-HHHHHHH
T ss_pred             EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhccc-ccCCCcEEEEEEecChhhcccHH-HHHHHHH
Confidence            588999999987543 35689999999999999999999987542111 11236899999999999885554 4454321


Q ss_pred             CcccCCCceEEEEEEcCCC
Q 009819          301 PFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~  319 (524)
                         ....++++++++|+.+
T Consensus       218 ---~~~~~~~v~~~~sr~~  233 (310)
T 3vo2_A          218 ---MAPDNFRLDFAVSREQ  233 (310)
T ss_dssp             ---HCTTTEEEEEEETTTC
T ss_pred             ---hCCCCEEEEEEECCCC
Confidence               1123799999999864

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=99.89  E-value=3.3e-23  Score=204.49  Aligned_cols=70  Identities=21%  Similarity=0.364  Sum_probs=57.1

Q ss_pred             EEEEe-CcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhc
Q 009819          222 TASVE-GPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  298 (524)
Q Consensus       222 ~V~Vd-GPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~el  298 (524)
                      ++.|+ ||||.+.... ..+++++|||||+||||+++++++++.+..      .++++|+|++|+.+++.+.+ +++++
T Consensus       103 ~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~-el~~l  174 (271)
T 4fk8_A          103 PVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER------FDKVVLTHTCRLKGELAYMD-YIKHD  174 (271)
T ss_dssp             EEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH------CSEEEEEECCCSHHHHHHHH-HHHTC
T ss_pred             EEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC------CCCEEEEEecCCHHHHhHHH-HHHHH
Confidence            68899 9999997654 257899999999999999999999876521      45899999999999986554 44443

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=99.89  E-value=1.2e-22  Score=211.86  Aligned_cols=85  Identities=18%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             EEEEeCcccCCCCCcc----ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819          222 TASVEGPYGHEVPYHL----MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  297 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~----~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e  297 (524)
                      +|.|+||||.+..+..    .+++++|||||+||||+++|+++++.+   +   ..++|+|+|++|+.+++.+.+ ++++
T Consensus       251 ~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~---~---~~~~v~l~~~~r~~~~~~~~~-el~~  323 (399)
T 4g1v_A          251 EIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKC---N---PNRPIYWIQSSYDEKTQAFKK-HVDE  323 (399)
T ss_dssp             EEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHH---C---TTSCEEEEEEESSSTTSTTHH-HHHH
T ss_pred             EEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHc---C---CCCCEEEEEecCCHHHhhhHH-HHHH
Confidence            6889999999876544    478999999999999999999999875   1   246899999999999985554 4454


Q ss_pred             ccCCcccCCCceEEEEEEcC
Q 009819          298 SICPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       298 ll~~~~~~~~~l~I~IyVTr  317 (524)
                      +.    ....++++++++++
T Consensus       324 l~----~~~~~~~~~~~~s~  339 (399)
T 4g1v_A          324 LL----AECANVDKIIVHTD  339 (399)
T ss_dssp             HH----TTCSSEEEEEEETT
T ss_pred             HH----HhCCCcEEEEEEeC
Confidence            42    23456777776654

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=99.89  E-value=8.9e-23  Score=205.72  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=68.1

Q ss_pred             EEEEeCcccCCCCCc--cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819          222 TASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~--~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell  299 (524)
                      +|.|+||||.++...  ..+++++|||||+|||||++||++++.+...+ ....++++|+|++|+.+++.|.++ ++++.
T Consensus       141 ~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~-~~~~~~v~l~~g~r~~~d~~~~~e-l~~l~  218 (311)
T 3lo8_A          141 KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPN-YRFGGLAWLFLGVANSDSLLYDEE-FTSYL  218 (311)
T ss_dssp             EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTT-CCCCSEEEEEEEESSGGGCSSHHH-HHHHH
T ss_pred             EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhcccc-ccCCCCEEEEEecCChHHhhHHHH-HHHHH
Confidence            588999999987643  25689999999999999999999987642111 011368999999999998855544 44432


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                      +   ....++++++++|+.+
T Consensus       219 ~---~~~~~~~~~~~~s~~~  235 (311)
T 3lo8_A          219 K---QYPDNFRYDKALSREQ  235 (311)
T ss_dssp             H---HCTTTEEEEEEETTTC
T ss_pred             H---hCCCcEEEEEEECCCC
Confidence            1   1123799999998764

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=99.89  E-value=2.7e-22  Score=199.19  Aligned_cols=87  Identities=18%  Similarity=0.337  Sum_probs=67.3

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+... ...++++||||||||||+++||++++.+..     ..++++|+|++|+.+++.+ .++++++.  
T Consensus       140 ~v~v~gP~G~f~~~-~~~~~~vliagGtGitP~~s~l~~~~~~~~-----~~~~v~l~~~~r~~~d~~~-~~el~~l~--  210 (290)
T 2r6h_A          140 KVMMSGPYGDFHIQ-DTDAEMLYIGGGAGMAPLRAQILHLFRTLK-----TGRKVSYWYGARSKNEIFY-EEDFREIE--  210 (290)
T ss_dssp             EEEEEEEECCCCCC-SSSCEEEEEEEGGGHHHHHHHHHHHHHTSC-----CCSCEEEEEEESSGGGCCS-HHHHHHHH--
T ss_pred             EEEEEecccCCcCC-CCCCeEEEEECccCHHHHHHHHHHHHHhcC-----CCCcEEEEEEcCCHHHHHH-HHHHHHHH--
Confidence            58899999999764 356899999999999999999999886421     2468999999999999854 44445432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....++++++++++..
T Consensus       211 --~~~~~~~~~~~~s~~~  226 (290)
T 2r6h_A          211 --REFPNFKFHIALSDPQ  226 (290)
T ss_dssp             --HHCTTEEEEEEESSCC
T ss_pred             --HhCCCeEEEEEEccCC
Confidence              1235689988888753

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.88  E-value=1.8e-22  Score=205.65  Aligned_cols=86  Identities=24%  Similarity=0.386  Sum_probs=67.2

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+..... .++++|||||+||||+++|++++..+   +   ..++++|+|++|+.+++.+. ++++++.  
T Consensus       194 ~v~v~gP~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~---~---~~~~v~l~~~~r~~~d~~~~-~el~~l~--  263 (338)
T 1krh_A          194 KMSFTGPFGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQK---G---SEHPVRLVFGVTQDCDLVAL-EQLDALQ--  263 (338)
T ss_dssp             EEEEEEEECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHH---C---CSSCEEEEEEESSGGGCCCH-HHHHHHH--
T ss_pred             EEEEECCccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHc---C---CCCeEEEEEEeCCHHHhhhH-HHHHHHH--
Confidence            5889999999976543 48899999999999999999999875   1   24689999999999998544 4444432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        ....++++++++++.+
T Consensus       264 --~~~~~~~~~~~~s~~~  279 (338)
T 1krh_A          264 --QKLPWFEYRTVVAHAE  279 (338)
T ss_dssp             --HHCTTEEEEEEETTCC
T ss_pred             --HhCCCeEEEEEEecCC
Confidence              1345799999988754

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=99.88  E-value=8.5e-22  Score=191.41  Aligned_cols=88  Identities=27%  Similarity=0.271  Sum_probs=65.4

Q ss_pred             EEEEe-CcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819          222 TASVE-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~Vd-GPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell  299 (524)
                      +|.|+ ||||.+..... .+++++|||||+||||+++|++++..+   +   ..++++|+|++|+.+++.+. ++++++.
T Consensus        87 ~v~v~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~---~---~~~~v~l~~~~r~~~~~~~~-~el~~l~  159 (248)
T 1fdr_A           87 EVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDL---D---RFKNLVLVHAARYAADLSYL-PLMQELE  159 (248)
T ss_dssp             EEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSC---T---TCSEEEEEEEESSGGGCTTH-HHHHHHH
T ss_pred             EEEEecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhh---C---CCCcEEEEEEcCCHHHhhHH-HHHHHHH
Confidence            57788 99999765433 368999999999999999999987542   1   24689999999999998544 4444432


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                      +   ....++++++++|+++
T Consensus       160 ~---~~~~~~~~~~~~s~~~  176 (248)
T 1fdr_A          160 K---RYEGKLRIQTVVSRET  176 (248)
T ss_dssp             H---HTTTSEEEEEEESSSC
T ss_pred             H---hCcCcEEEEEEEecCC
Confidence            1   1124788888888754

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=99.87  E-value=1.5e-21  Score=203.42  Aligned_cols=86  Identities=22%  Similarity=0.441  Sum_probs=67.0

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|.||+|.+..+....++++|||||+||||+++||++++.  .     ..++++|+|++|+.+++.+ .++++++.  
T Consensus       249 ~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~--~-----~~~~v~l~~~~r~~~~~~~-~~el~~l~--  318 (403)
T 1cqx_A          249 QVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--A-----PPRQVVFVHGARNSAVHAM-RDRLREAA--  318 (403)
T ss_dssp             EEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC--S-----SCCCEEEEEEESCSSSCHH-HHHHHHHH--
T ss_pred             EEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh--C-----CCCcEEEEEEeCChhhCcH-HHHHHHHH--
Confidence            688999999886643456889999999999999999999864  1     2468999999999999855 45555542  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        .+..++++++++++..
T Consensus       319 --~~~~~~~~~~~~s~~~  334 (403)
T 1cqx_A          319 --KTYENLDLFVFYDQPL  334 (403)
T ss_dssp             --HHCTTEEEEEEESSCC
T ss_pred             --HhCCCcEEEEEECCCC
Confidence              2345689988888654

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=99.87  E-value=1.7e-21  Score=195.49  Aligned_cols=93  Identities=20%  Similarity=0.286  Sum_probs=66.6

Q ss_pred             EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhc--CC-CCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819          222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINE--GK-SCLPRNVLIVWAVKKSNELSLLSNFYKE  297 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~--~~-~~~~rkV~LiW~vRs~~dl~wl~ell~e  297 (524)
                      +|.|+||||.++... ...++++|||||+||||++++|++++.+.+.  +. .....+++|+|++|+.+++.+ .+++++
T Consensus       130 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~-~~el~~  208 (304)
T 2bmw_A          130 EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILY-KEELEE  208 (304)
T ss_dssp             EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTT-HHHHHH
T ss_pred             EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChHhcch-HHHHHH
Confidence            588999999986432 2467899999999999999999998764211  00 001357999999999998854 444555


Q ss_pred             ccCCcccCC-CceEEEEEEcCCC
Q 009819          298 SICPFFSDK-LNLETFIYVTRET  319 (524)
Q Consensus       298 ll~~~~~~~-~~l~I~IyVTr~~  319 (524)
                      +.+    .. .+++++++++++.
T Consensus       209 ~~~----~~~~~~~~~~~~s~~~  227 (304)
T 2bmw_A          209 IQQ----KYPDNFRLTYAISREQ  227 (304)
T ss_dssp             HHH----HCTTTEEEEEEETTTC
T ss_pred             HHH----hCCCcEEEEEEEcCCC
Confidence            321    22 3688988888754

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=99.87  E-value=1.1e-21  Score=204.17  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=68.0

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+..+....++++|||||+||||+++|+++++.+   +   ..++++|+|++|+.+++.+ .++++++.  
T Consensus       242 ~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~---~---~~~~v~l~~~~r~~~~~~~-~~el~~l~--  312 (396)
T 1gvh_A          242 VVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKA---G---HTAQVNWFHAAENGDVHAF-ADEVKELG--  312 (396)
T ss_dssp             EEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHH---T---CCSCEEEEEEESCTTTCCS-HHHHHHHH--
T ss_pred             EEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhc---C---CCCcEEEEEEeCCHHHhhh-HHHHHHHH--
Confidence            5889999998865434568899999999999999999999875   1   2468999999999999855 44445432  


Q ss_pred             cccCCCceEEEEEEcCCC
Q 009819          302 FFSDKLNLETFIYVTRET  319 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~  319 (524)
                        .+..++++++++++..
T Consensus       313 --~~~~~~~~~~~~s~~~  328 (396)
T 1gvh_A          313 --QSLPRFTAHTWYRQPS  328 (396)
T ss_dssp             --HTSSSEEEEEEESSCC
T ss_pred             --HHCCCeEEEEEECCCC
Confidence              2345789988887653

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=99.87  E-value=3.2e-21  Score=194.87  Aligned_cols=93  Identities=19%  Similarity=0.262  Sum_probs=66.4

Q ss_pred             EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|+||||.++... ...++++|||||||||||++||++++.+...+ .....+++|+|++|+.+++.+.+ +++++.+
T Consensus       144 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~-~~~~~~v~L~~g~R~~~d~~~~~-el~~l~~  221 (314)
T 1fnb_A          144 EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDD-YKFNGLAWLFLGVPTSSSLLYKE-EFEKMKE  221 (314)
T ss_dssp             EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTT-BCCCSEEEEEEEESSGGGCCSHH-HHHHHHH
T ss_pred             EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhcccc-ccCCCCEEEEEecCCHHHhhhHH-HHHHHHH
Confidence            588999999986432 24678999999999999999999987541110 01146899999999999885544 4454321


Q ss_pred             CcccCCCceEEEEEEcCCC
Q 009819          301 PFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~  319 (524)
                         ....++++++++++++
T Consensus       222 ---~~~~~~~~~~~~s~~~  237 (314)
T 1fnb_A          222 ---KAPDNFRLDFAVSREQ  237 (314)
T ss_dssp             ---HCTTTEEEEEEETTTC
T ss_pred             ---hCCCcEEEEEEECCCC
Confidence               1123688888888754

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.86  E-value=5.9e-21  Score=194.10  Aligned_cols=67  Identities=22%  Similarity=0.389  Sum_probs=55.3

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  297 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e  297 (524)
                      +|.|+||||.|.... .+++++||||||||||+++|++++..+   +    .++++|+|++|+.+++.|.++ +++
T Consensus        95 ~v~v~gP~g~f~l~~-~~~~~vliagG~GItP~~s~l~~l~~~---~----~~~v~l~~~~r~~~~~~~~~e-l~~  161 (321)
T 2pia_A           95 AVEVSLPRNEFPLDK-RAKSFILVAGGIGITPMLSMARQLRAE---G----LRSFRLYYLTRDPEGTAFFDE-LTS  161 (321)
T ss_dssp             EEEECCCBCCSCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHH---C----SSEEEEEEEESCGGGCTTHHH-HHS
T ss_pred             EEEEeCCccccccCC-CCCCEEEEEecccHhHHHHHHHHHHHc---C----CCcEEEEEEECChhhhHHHHH-Hhc
Confidence            688999999986653 468999999999999999999999875   1    168999999999999865544 444

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=99.86  E-value=1.4e-20  Score=186.49  Aligned_cols=90  Identities=22%  Similarity=0.259  Sum_probs=65.3

Q ss_pred             EEEEe-CcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH-hc
Q 009819          222 TASVE-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK-ES  298 (524)
Q Consensus       222 ~V~Vd-GPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~-el  298 (524)
                      +|.|+ ||||.+..... .+++++|||||+||||+++|++++..+   +   ..++++|+|++|+.+++.+.+ +++ ++
T Consensus       101 ~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~---~---~~~~v~l~~~~r~~~~~~~~~-el~~~l  173 (272)
T 2bgi_A          101 QIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAY---E---KFDEVIMMHACRTVAELEYGR-QLVEAL  173 (272)
T ss_dssp             EEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGG---T---SCSEEEEEEEESSSGGGHHHH-HHHHHH
T ss_pred             EEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhc---C---CCCcEEEEEEeCCHHHhhHHH-HHHHHH
Confidence            57788 99999865543 268999999999999999999987653   1   246899999999999986554 444 43


Q ss_pred             cC-CcccC--CCceEEEEEEcCC
Q 009819          299 IC-PFFSD--KLNLETFIYVTRE  318 (524)
Q Consensus       299 l~-~~~~~--~~~l~I~IyVTr~  318 (524)
                      .+ .....  ..+++++.++|++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~s~~  196 (272)
T 2bgi_A          174 QEDPLIGELVEGKLKYYPTTTRE  196 (272)
T ss_dssp             HHCTTTTTTSTTTEEEEEEESSS
T ss_pred             HhcchhhcccCCcEEEEEEecCC
Confidence            21 00001  2578888888865

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=99.85  E-value=5.9e-21  Score=200.66  Aligned_cols=92  Identities=18%  Similarity=0.339  Sum_probs=66.4

Q ss_pred             EEEEeCcccCCCCCc-cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~-~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~  300 (524)
                      +|.|+||||.++... ...++++|||||+|||||++||++++.+.... .....+++|+|++|+.+++.+. ++++++.+
T Consensus       232 ~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~-~~~~~~v~L~~g~R~~~d~~~~-~eL~~l~~  309 (402)
T 2b5o_A          232 DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHED-YKFKGKAWLIFGVPYTANILYK-DDFEKMAA  309 (402)
T ss_dssp             CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSS-CCCCSEEEEEEEESSGGGCTTH-HHHHHHHH
T ss_pred             eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhcccc-ccccCCEEEEEecCCHHHhHHH-HHHHHHHH
Confidence            478999999986432 34678999999999999999999987641110 0124689999999999988554 44555321


Q ss_pred             CcccCC-CceEEEEEEcCCC
Q 009819          301 PFFSDK-LNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~-~~l~I~IyVTr~~  319 (524)
                          .. .++++++++++++
T Consensus       310 ----~~~~~~~v~~~~S~~~  325 (402)
T 2b5o_A          310 ----ENPDNFRLTYAISREQ  325 (402)
T ss_dssp             ----HCTTTEEEEEEETTTC
T ss_pred             ----hCCCcEEEEEEECCCC
Confidence                22 3689988888753

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=99.85  E-value=1.4e-20  Score=184.20  Aligned_cols=90  Identities=29%  Similarity=0.341  Sum_probs=64.8

Q ss_pred             EEEEe-CcccCCCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH-hc
Q 009819          222 TASVE-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK-ES  298 (524)
Q Consensus       222 ~V~Vd-GPYG~~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~-el  298 (524)
                      +|.|. ||||.+..... .+++++|||||+||||+++|++++..+..      .++++|+|++|+.+++.+.+ +++ ++
T Consensus        87 ~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~-el~~~l  159 (257)
T 2qdx_A           87 ELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER------YEKVILVHGVRWVSELAYAD-FITKVL  159 (257)
T ss_dssp             EEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH------CSEEEEEEEESSGGGCTTHH-HHHTTG
T ss_pred             EEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC------CCeEEEEEEcCCHHHhHhHH-HHHHHH
Confidence            57788 99999865433 36899999999999999999999876421      35899999999999985544 444 43


Q ss_pred             cCCccc-C--CCceEEEEEEcCC
Q 009819          299 ICPFFS-D--KLNLETFIYVTRE  318 (524)
Q Consensus       299 l~~~~~-~--~~~l~I~IyVTr~  318 (524)
                      .+.... +  ..+++++.++|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~s~~  182 (257)
T 2qdx_A          160 PEHEYFGDQVKEKLIYYPLVTRE  182 (257)
T ss_dssp             GGCTTTHHHHHHHEEEEEEESSS
T ss_pred             HhchhhhccCCCcEEEEEEecCC
Confidence            210000 1  1467888888765

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=99.85  E-value=9.8e-21  Score=191.03  Aligned_cols=90  Identities=21%  Similarity=0.419  Sum_probs=66.5

Q ss_pred             EEEEeCcccCCCCCc--cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhcc
Q 009819          222 TASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~--~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell  299 (524)
                      +|.|+||||.++...  ...+++||||||+||||+++|+++++.+..   .....+++|+|++|+.+++.+ .++++++.
T Consensus       146 ~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~---~~~~~~v~l~~g~r~~~d~~~-~~el~~l~  221 (314)
T 2rc5_A          146 EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKL---IKFTGNITLVYGAPYSDELVM-MDYLKGLE  221 (314)
T ss_dssp             EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCS---SCBCSCEEEEEEESSGGGSCS-HHHHHHHH
T ss_pred             EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcc---cCCCCcEEEEEEeCCHHHHhH-HHHHHHHH
Confidence            588999999986533  246899999999999999999999875411   012357999999999998754 44455532


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                      .    ...++++++++|++.
T Consensus       222 ~----~~~~~~~~~~~s~~~  237 (314)
T 2rc5_A          222 S----KHKNFKLITAISREE  237 (314)
T ss_dssp             H----HHSSEEEEEEETTTC
T ss_pred             H----hCCcEEEEEEECCCC
Confidence            1    224788988888754

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=99.85  E-value=4.5e-21  Score=185.74  Aligned_cols=123  Identities=17%  Similarity=0.222  Sum_probs=84.9

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  301 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~  301 (524)
                      +|.|+||||.+......+++++|||||+||||+++|+++++.+.     ...++++|+|++|+.+++.+ .++++++.  
T Consensus        99 ~v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~-----~~~~~v~l~~~~r~~~~~~~-~~el~~l~--  170 (243)
T 2eix_A           99 FLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNP-----KEKTIINLIFANVNEDDILL-RTELDDMA--  170 (243)
T ss_dssp             EEEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCT-----TCCCEEEEEEEEEEGGGCTT-HHHHHHHH--
T ss_pred             EEEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCC-----CCCcEEEEEEEcCCHHHhhH-HHHHHHHH--
Confidence            58899999998665445689999999999999999999987531     12568999999999999854 44455432  


Q ss_pred             cccCCCceEEEEEEcCCCC-CCCcccccccccccccCCCCCCCceeeeeCCCCc
Q 009819          302 FFSDKLNLETFIYVTRETE-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  354 (524)
Q Consensus       302 ~~~~~~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~  354 (524)
                        ....++++++++++..+ +....+.++.+++....+.+.+....++||+..+
T Consensus       171 --~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~~~~~~vy~CGp~~m  222 (243)
T 2eix_A          171 --KKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCGPPMM  222 (243)
T ss_dssp             --HHCTTEEEEEEEEECCTTCCSEESSCCHHHHHHHSCCTTSSEEEEEESSHHH
T ss_pred             --HHCCCeEEEEEeCCCCccccCcCCccCHHHHHHhcCCCCCCeEEEEECCHHH
Confidence              12347899998887532 2223344443333333333334556889999763

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=99.83  E-value=1.1e-19  Score=179.07  Aligned_cols=67  Identities=18%  Similarity=0.368  Sum_probs=54.2

Q ss_pred             EEEEeCcccC-CCCCcc-ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819          222 TASVEGPYGH-EVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  297 (524)
Q Consensus       222 ~V~VdGPYG~-~~~~~~-~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e  297 (524)
                      +|.|+||||. |..... ..++++||||||||||+++|++++..+        .++++|+|++|+.+++.+.+ ++++
T Consensus        91 ~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~--------~~~v~l~~~~r~~~~~~~~~-el~~  159 (262)
T 1ep3_B           91 KVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKT--------GCQMTILLGFASENVKILEN-EFSN  159 (262)
T ss_dssp             EEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHH--------TCEEEEEEEESSGGGCCCHH-HHHT
T ss_pred             EEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHc--------CCeEEEEEEcCCHHHhhhHH-HHhh
Confidence            5889999999 644332 368999999999999999999999875        25899999999999985544 4444

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=99.80  E-value=2.3e-19  Score=176.42  Aligned_cols=126  Identities=16%  Similarity=0.222  Sum_probs=80.9

Q ss_pred             EEEEeCcccCCC--------CCc--cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHH
Q 009819          222 TASVEGPYGHEV--------PYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL  291 (524)
Q Consensus       222 ~V~VdGPYG~~~--------~~~--~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl  291 (524)
                      +|.|+||||.+.        ...  ...++++|||||+||||+++|+++++.+..    ...++++|+|++|+.+++.+.
T Consensus       109 ~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~----~~~~~v~l~~~~r~~~d~~~~  184 (270)
T 2cnd_A          109 YIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP----EDHTEMHLVYANRTEDDILLR  184 (270)
T ss_dssp             EEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT----TCCCEEEEEEEESCGGGCTTH
T ss_pred             EEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC----CCCcEEEEEEEcCCHHHcchH
Confidence            588999999842        111  246789999999999999999999986411    125689999999999998554


Q ss_pred             HHHHHhccCCcccCCCceEEEEEEcCCC----CCCCcccccccccccccCCCCCCCceeeeeCCCCch
Q 009819          292 SNFYKESICPFFSDKLNLETFIYVTRET----EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV  355 (524)
Q Consensus       292 ~ell~ell~~~~~~~~~l~I~IyVTr~~----~~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~  355 (524)
                      + +++++.+   ....+++++..+++..    .+....+.++..++....+...+....++||+..++
T Consensus       185 ~-el~~l~~---~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m~  248 (270)
T 2cnd_A          185 D-ELDRWAA---EYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMI  248 (270)
T ss_dssp             H-HHHHHHH---HCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHHH
T ss_pred             H-HHHHHHH---HCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEEEECCHHHH
Confidence            4 4444321   1123688888887632    122223444433333333333334567899997643

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=99.80  E-value=1.7e-19  Score=178.05  Aligned_cols=125  Identities=18%  Similarity=0.265  Sum_probs=81.8

Q ss_pred             EEEEeCcccCCCCC----------------ccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC
Q 009819          222 TASVEGPYGHEVPY----------------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS  285 (524)
Q Consensus       222 ~V~VdGPYG~~~~~----------------~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~  285 (524)
                      +|.|+||||.+...                ...+++++|||||+||||+++|+++++.+.     ...++++|+|++|+.
T Consensus       113 ~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~-----~~~~~v~l~~~~r~~  187 (275)
T 1umk_A          113 TIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP-----DDHTVCHLLFANQTE  187 (275)
T ss_dssp             EEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT-----TCCCEEEEEEEESSG
T ss_pred             EEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCC-----CCCcEEEEEEEcCCH
Confidence            58899999997431                024678999999999999999999987531     125789999999999


Q ss_pred             chHHHHHHHHHhccCCcccCCCceEEEEEEcCCCC-CCCcccccccccccccCCCCCCCceeeeeCCCCch
Q 009819          286 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETE-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV  355 (524)
Q Consensus       286 ~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~  355 (524)
                      +++.+. ++++++.+   ....+++++..+++... +....+.++..++....+.+.+....++||+..++
T Consensus       188 ~d~~~~-~el~~l~~---~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m~  254 (275)
T 1umk_A          188 KDILLR-PELEELRN---KHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMI  254 (275)
T ss_dssp             GGCTTH-HHHHHHHH---HCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCGGGCCEEEEESCHHHH
T ss_pred             HHhhHH-HHHHHHHH---hCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCCCCCCeEEEEECCHHHH
Confidence            998554 44454321   11125888777776532 22233444433333333333234568899997643

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=99.68  E-value=4.9e-17  Score=169.75  Aligned_cols=87  Identities=11%  Similarity=0.085  Sum_probs=63.2

Q ss_pred             EEEEeC-cccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhcc
Q 009819          222 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdG-PYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell  299 (524)
                      +|.|.| |.|.|.......++++|||||+|||||++++++++...      ...++.|+|++|+. +++. +.++++++.
T Consensus       209 ~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~d~l-y~~El~~~~  281 (374)
T 1ddg_A          209 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADE------APGKNWLFFGNPHFTEDFL-YQVEWQRYV  281 (374)
T ss_dssp             EEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHT------CCSCEEEEEEESCHHHHCT-THHHHHHHH
T ss_pred             EEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcC------CCCCEEEEEEeCCchhhhh-HHHHHHHHH
Confidence            577887 55677554334678999999999999999999987651      24579999999998 5664 455555542


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                      +    ....+++++.+++++
T Consensus       282 ~----~~~~~~l~~a~Srd~  297 (374)
T 1ddg_A          282 K----EGVLTRIDLAWSRDQ  297 (374)
T ss_dssp             H----TTSCCEEEEEETTSS
T ss_pred             H----hCCCcEEEEEEecCC
Confidence            1    334568888888754

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=99.65  E-value=9.8e-16  Score=161.04  Aligned_cols=91  Identities=14%  Similarity=0.182  Sum_probs=66.7

Q ss_pred             eEEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhcc
Q 009819          221 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  299 (524)
Q Consensus       221 l~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell  299 (524)
                      +.+.|+||+|.|.......++++|||||+|||||++++++.....+.+.  ...+++|+|++|+. +++ ++.++++++.
T Consensus       222 v~v~v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~--~~~~v~L~~G~R~~~~d~-ly~~el~~~~  298 (393)
T 4dql_A          222 ITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQ--SLGEAHLYFGCRSPHEDY-LYQEELENAQ  298 (393)
T ss_dssp             EEEEEECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTCC-TTHHHHHHHH
T ss_pred             EEEEEEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCC--CCCCEEEEEEECCcchhh-HHHHHHHHHH
Confidence            5788999999987655456789999999999999999998643222221  24579999999994 666 4555555542


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                           +...+++++.+++.+
T Consensus       299 -----~~~~l~l~~a~Sr~~  313 (393)
T 4dql_A          299 -----SEGIITLHTAFSRMP  313 (393)
T ss_dssp             -----HTTSCEEEEEESSCT
T ss_pred             -----hCCCeEEEEEEeCCC
Confidence                 235678888888743

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=99.52  E-value=7.5e-14  Score=148.39  Aligned_cols=92  Identities=16%  Similarity=0.111  Sum_probs=65.2

Q ss_pred             EEEEeC-cccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCc-hHHHHHHHHHhcc
Q 009819          222 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdG-PYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~-dl~wl~ell~ell  299 (524)
                      +|.|.| |+|.|.......++++|||||+|||||++++++++...+.. .....+++|+|++|+.+ ++. +.++++++.
T Consensus       261 ~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~l-y~~El~~~~  338 (435)
T 1f20_A          261 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHI-YREETLQAK  338 (435)
T ss_dssp             EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEESCTTTSCT-THHHHHHHH
T ss_pred             EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhc-cCCCCCEEEEEeecccccchh-HHHHHHHHH
Confidence            578888 67787654434578999999999999999999987642100 01246899999999997 553 455555542


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                      +    ....+++++.++++.
T Consensus       339 ~----~~~~~~l~~a~Sr~~  354 (435)
T 1f20_A          339 N----KGVFRELYTAYSREP  354 (435)
T ss_dssp             H----TTSEEEEEEEESSCT
T ss_pred             H----cCCccEEEEEECCCC
Confidence            1    334567888888764

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.52  E-value=1.8e-13  Score=134.49  Aligned_cols=57  Identities=11%  Similarity=0.085  Sum_probs=46.5

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchH
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL  288 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl  288 (524)
                      +|.|.||+|.|.... ..++++||||||||||+++|++++..         ..++++++.+|+.+++
T Consensus        96 ~l~v~gP~G~f~l~~-~~~~~lliagGtGitPi~s~l~~l~~---------~~~~~~~~~~~~~~d~  152 (252)
T 2gpj_A           96 LIQIGGPGLKKLINF-EADWFLLAGDMTALPAISVNLAKLPN---------NAVGYAVIEVLSEADI  152 (252)
T ss_dssp             EEEEEEEECCCCCCS-SSSEEEEEEEGGGHHHHHHHHHHSCT---------TCEEEEEEEESSGGGC
T ss_pred             EEEEecCCCCCcCCC-CCceEEEEcchhhHHHHHHHHHhCCC---------CCcEEEEEEECCHHHh
Confidence            689999999886543 34789999999999999999998732         2367888888987765

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=99.52  E-value=1e-13  Score=151.28  Aligned_cols=95  Identities=11%  Similarity=0.083  Sum_probs=66.6

Q ss_pred             eEEEEeCccc-CCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhc
Q 009819          221 ITASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES  298 (524)
Q Consensus       221 l~V~VdGPYG-~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~el  298 (524)
                      .+|.|.||+| .|.......+++||||||+|||||++++++.....+.+......++.|+|++|+. +|+.+ .++++++
T Consensus       359 ~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly-~dEL~~~  437 (539)
T 2qtl_A          359 PKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLF-RKELRHF  437 (539)
T ss_dssp             CEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTT-HHHHHHH
T ss_pred             eEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHH-HHHHHHH
Confidence            3788999997 6654433457899999999999999999996543221110124689999999999 67744 4455554


Q ss_pred             cCCcccCCCceEEEEEEcCCCC
Q 009819          299 ICPFFSDKLNLETFIYVTRETE  320 (524)
Q Consensus       299 l~~~~~~~~~l~I~IyVTr~~~  320 (524)
                      .    .....+++++.++|++.
T Consensus       438 ~----~~g~~~~l~~afSRd~~  455 (539)
T 2qtl_A          438 L----KHGILTHLKVSFSRDAP  455 (539)
T ss_dssp             H----HTTSSCEEEEEESSSCC
T ss_pred             H----HhCCCcEEEEEEccCCC
Confidence            2    23445788888888653

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.46  E-value=4.9e-13  Score=149.66  Aligned_cols=92  Identities=16%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             EEEEeC-cccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCc-hHHHHHHHHHhcc
Q 009819          222 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI  299 (524)
Q Consensus       222 ~V~VdG-PYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~-dl~wl~ell~ell  299 (524)
                      +|.|.| |.|.|.......+++||||||||||||++|+++++...+.. .....+++|+|++|+.+ ++.+ .++++++.
T Consensus       482 ~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~v~L~~G~R~~~~D~ly-~dEL~~~~  559 (688)
T 1tll_A          482 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHIY-REETLQAK  559 (688)
T ss_dssp             EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHS-CCCCCCEEEEEEESCTTTTCTT-HHHHHHHH
T ss_pred             EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhc-cCCCCCEEEEEEeccchhhhhH-HHHHHHHH
Confidence            577888 66787654434578999999999999999999987642211 01256899999999997 5544 55555542


Q ss_pred             CCcccCCCceEEEEEEcCCC
Q 009819          300 CPFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       300 ~~~~~~~~~l~I~IyVTr~~  319 (524)
                          .....++++++++++.
T Consensus       560 ----~~~~~~~l~~a~Sr~~  575 (688)
T 1tll_A          560 ----NKGVFRELYTAYSREP  575 (688)
T ss_dssp             ----HTTSEEEEEEEESSCT
T ss_pred             ----HcCCceEEEEEECCCC
Confidence                2334578888888764

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=99.43  E-value=4.9e-13  Score=143.29  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell~  300 (524)
                      +|.|.+|+|.|.......++++|||||+|||||++++++.+...+.+.  ...++.|+|++|+. +|+.+ .++++++.+
T Consensus       289 ~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~--~~~~~~Lf~G~R~~~~D~ly-~dEl~~l~~  365 (458)
T 3qfs_A          289 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYLY-REELAQFHR  365 (458)
T ss_dssp             EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTC--CCCCEEEEEEESCTTTSCTT-HHHHHHHHH
T ss_pred             EEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEEeCCchHhhhH-HHHHHHHHH
Confidence            688999999886654445789999999999999999998643211121  24579999999996 67644 444555321


Q ss_pred             CcccCCCceEEEEEEcCCC
Q 009819          301 PFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~  319 (524)
                          ....+++++.+++++
T Consensus       366 ----~g~l~~l~~a~SRd~  380 (458)
T 3qfs_A          366 ----DGALTQLNVAFSREQ  380 (458)
T ss_dssp             ----HTSSSEEEEEETTSS
T ss_pred             ----cCCCCEEEEEEECCC
Confidence                222347777887754

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.41  E-value=3.8e-13  Score=121.96  Aligned_cols=62  Identities=19%  Similarity=0.295  Sum_probs=49.2

Q ss_pred             EEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHH
Q 009819          223 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  294 (524)
Q Consensus       223 V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~el  294 (524)
                      +.|.||||.++... ..++++||||||||||+++|+++++++        ..+++|+ ++|+.+++.+.+++
T Consensus         3 ~~v~GP~G~~~~~~-~~~~~llIaGG~GiaPl~sm~~~l~~~--------~~~v~l~-g~R~~~~~~~~~el   64 (142)
T 3lyu_A            3 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEI--------GNDVTTL-HVTFEPMVILKEEL   64 (142)
T ss_dssp             ----CCCSCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHT--------TCEEEEE-EEEEGGGCCSHHHH
T ss_pred             eeeeCCCCCCccCC-CCCeEEEEECcCcHHHHHHHHHHHHhc--------CCcEEEE-EeCCHHHhhHHHHH
Confidence            67999999997653 468999999999999999999998764        2479999 99999999665544

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.38  E-value=1.2e-12  Score=144.93  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             EEEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCC-chHHHHHHHHHhccC
Q 009819          222 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  300 (524)
Q Consensus       222 ~V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~-~dl~wl~ell~ell~  300 (524)
                      +|.|.||+|.|.......++++|||||+|||||++++++.+...+.+.  ...++.|+|++|+. +|+.+ .++++++.+
T Consensus       449 ~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~--~~~~~~L~~G~R~~~~D~ly-~~el~~~~~  525 (618)
T 3qe2_A          449 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYLY-REELAQFHR  525 (618)
T ss_dssp             EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTSCTT-HHHHHHHHH
T ss_pred             EEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEecCCCccccch-HHHHHHHHh
Confidence            688899999886654445789999999999999999999875433221  24679999999998 47644 445555321


Q ss_pred             CcccCCCceEEEEEEcCCC
Q 009819          301 PFFSDKLNLETFIYVTRET  319 (524)
Q Consensus       301 ~~~~~~~~l~I~IyVTr~~  319 (524)
                          ....+++++.++|+.
T Consensus       526 ----~g~l~~l~~a~Srd~  540 (618)
T 3qe2_A          526 ----DGALTQLNVAFSREQ  540 (618)
T ss_dssp             ----HTSSSEEEEEETTSS
T ss_pred             ----cCCCcEEEEEEcCCC
Confidence                222348888888754

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.36  E-value=2e-12  Score=144.66  Aligned_cols=77  Identities=12%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             cccEEEEecCcChHHHHHHHHHHHHHhhc----CCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEE
Q 009819          239 YENLILVAGGIGISPFLAILSDILHRINE----GKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIY  314 (524)
Q Consensus       239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~----~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~Iy  314 (524)
                      .+++||||||+|||||+++|++++.+...    .......++.|+|++|+.+|+.+ +++++++..   .....+++++.
T Consensus       524 ~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly-~dEl~~~~~---~~g~~~~l~~a  599 (682)
T 2bpo_A          524 STPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLY-QDEWPEYAK---KLDGSFEMVVA  599 (682)
T ss_dssp             TSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSSSCTT-TTTHHHHHH---HHGGGEEEEEE
T ss_pred             CCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChhhhhh-HHHHHHHHH---hcCCceEEEEE
Confidence            46899999999999999999998765320    00112468999999999988744 444444311   12345888888


Q ss_pred             EcCCC
Q 009819          315 VTRET  319 (524)
Q Consensus       315 VTr~~  319 (524)
                      ++|.+
T Consensus       600 fSr~d  604 (682)
T 2bpo_A          600 HSRLP  604 (682)
T ss_dssp             ESCCT
T ss_pred             ECCCC
Confidence            88853

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.36  E-value=1e-12  Score=121.15  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=49.2

Q ss_pred             E-EEEeCcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHH
Q 009819          222 T-ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  294 (524)
Q Consensus       222 ~-V~VdGPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~el  294 (524)
                      + +.|+||||.++... ..++++||||||||||+++|++++.++        .++++|+ ++|+.+++.+.+++
T Consensus         6 ~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~--------~~~v~l~-g~r~~~d~~~~~el   69 (158)
T 3lrx_A            6 SLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEI--------GNDVTTL-HVTFEPMVILKEEL   69 (158)
T ss_dssp             ------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHH--------TCEEEEE-EECBGGGCCSHHHH
T ss_pred             EeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhc--------CCcEEEE-EeCCHHHhhHHHHH
Confidence            5 58999999987543 568999999999999999999999764        2479999 99999999766554

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=82.31  E-value=1.1  Score=42.16  Aligned_cols=51  Identities=18%  Similarity=0.154  Sum_probs=43.0

Q ss_pred             CCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHH
Q 009819           12 YLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL   63 (524)
Q Consensus        12 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~   63 (524)
                      .+.|+||||++|+++.-+..++||||++|.+.+ .+.++|+||+.  |.+|+.|
T Consensus        39 ~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~~~G~~S~~l   91 (243)
T 2eix_A           39 VVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVYEKGQMSQYI   91 (243)
T ss_dssp             CCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCTTCHHHHHH
T ss_pred             ccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEcCCCCcchHh
Confidence            578999999999998656678999999999864 47899999996  8787655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	524
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	7e-06
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	6e-05
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	1e-04
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	1e-04
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	2e-04
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	3e-04
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	8e-04
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	0.002
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	0.002
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	0.002
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	0.003
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	0.003
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	0.003

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 7e-06
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 241 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300
             ILV  G GI+PF +        I          VL+    +   +       Y+E   
Sbjct: 11  PCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDH-----IYREETL 65

Query: 301 PFFSDKLNLETFIYVTRETEPP 322
              +  +  E +   +RE + P
Sbjct: 66  QAKNKGVFRELYTAYSREPDRP 87

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 241 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300
            +I++  G GI+PF + L  +    ++         L +     S+ L     + +E   
Sbjct: 10  TIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLL-----YKEEFEK 64

Query: 301 PFFSDKLNLETFIYVTRETEPPLEEG 326
                  N      V+RE      E 
Sbjct: 65  MKEKAPDNFRLDFAVSREQTNEKGEK 90

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 6/81 (7%)

Query: 241 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 300
             I++A G G++PF   L  +    +           +   V  S+        Y E   
Sbjct: 5   THIMIATGTGVAPFRGYLRRMFME-DVPNYRFGGLAWLFLGVANSDS-----LLYDEEFT 58

Query: 301 PFFSDKLNLETFIYVTRETEP 321
            +     +   +       + 
Sbjct: 59  SYLKQYPDNFRYDKALSREQK 79

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 241 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 276
           +L +++ G G++PF++++ D        K  L   V
Sbjct: 9   HLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGV 44

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 241 NLILVAGGIGISPFLAILSDILH----RINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK 296
           N+I++AGG GI+P    L  +        N        + L+       N L     + +
Sbjct: 8   NVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNIL-----YKE 62

Query: 297 ESICPFFSDKLNLETFIYVTRETE 320
           E          N      ++RE +
Sbjct: 63  ELEEIQQKYPDNFRLTYAISREQK 86

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 240 ENLILVAGGIGISPFLAILSDILHRINEGKSCL 272
           E L ++A G  I P+L+IL             L
Sbjct: 7   ETLWMLATGTAIGPYLSILRLGKDLDRFKNLVL 39

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 242 LILVAGGIGISPFLAILSDILHRINEGKSCL 272
           ++++AGG GI+PFL++L  +  + +E    L
Sbjct: 8   VLMLAGGTGIAPFLSMLQVLEQKGSEHPVRL 38

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 241 NLILVAGGIGISPFLAILSDILH 263
            +IL+AGG G S   +IL   L 
Sbjct: 7   PMILIAGGTGFSYARSILLTALA 29

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 12/96 (12%), Positives = 29/96 (30%)

Query: 242 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 301
              VAGG G++P ++++  +       ++ +   V     +   +EL  L    +     
Sbjct: 11  RYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVK 70

Query: 302 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY 337
                 + +         +   E+ E          
Sbjct: 71  ACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYL 106

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 7/23 (30%), Positives = 17/23 (73%)

Query: 242 LILVAGGIGISPFLAILSDILHR 264
           ++L++GG+G++P +++L   L  
Sbjct: 8   IVLISGGVGLTPMVSMLKVALQA 30

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 5/27 (18%), Positives = 13/27 (48%)

Query: 240 ENLILVAGGIGISPFLAILSDILHRIN 266
           + ++++ GGIG+ P   +   +     
Sbjct: 9   DKILIIGGGIGVPPLYELAKQLEKTGC 35

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 242 LILVAGGIGISPFLAILSDILHR 264
           + L++ G+G +P LA+L  +   
Sbjct: 9   VTLISAGVGQTPMLAMLDTLAKA 31

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 241 NLILVAGGIGISPFLAILSDILHR 264
            L ++ GG GI+P   I+  +L  
Sbjct: 14  RLAMICGGSGITPMYQIIQAVLRD 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	524
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.59
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.56
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.53
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.47
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.38
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.36
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.34
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.34
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.23
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.2
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.19
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.16
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.13
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.11
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	99.07
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.03
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	98.99
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	98.92
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	98.69
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	98.57
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	98.53
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	98.45
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	98.32
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	98.31
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	98.24
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	97.86
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	97.72
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	97.51
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	97.3
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	97.23
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	94.53

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.59  E-value=2.6e-15  Score=131.96  Aligned_cols=71  Identities=21%  Similarity=0.469  Sum_probs=56.2

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr  317 (524)
                      ..+++||||||||||||+||+++++++       ..++++|+|++|+.+++.+.+++.+. .    .+..+++++.++++
T Consensus         4 ~~~plvliagGtGIaP~~sil~~~~~~-------~~~~i~li~~~r~~~~l~~~~~~~~~-~----~~~~~~~~~~~~~~   71 (142)
T d1cqxa3           4 AKTPIVLISGGVGLTPMVSMLKVALQA-------PPRQVVFVHGARNSAVHAMRDRLREA-A----KTYENLDLFVFYDQ   71 (142)
T ss_dssp             CCSCEEEEESSCCHHHHHHHHHHHTCS-------SCCCEEEEEEESCSSSCHHHHHHHHH-H----HHCTTEEEEEEESS
T ss_pred             CCCCEEEEEcceeHHHHHHHHHHHHHc-------CCCcEEEEeeccChhhhhhHHHHHHH-H----HhCCCeEEEEEEcc
Confidence            456799999999999999999987643       24689999999999999776655432 1    24568999999998


Q ss_pred             CCC
Q 009819          318 ETE  320 (524)
Q Consensus       318 ~~~  320 (524)
                      ...
T Consensus        72 ~~~   74 (142)
T d1cqxa3          72 PLP   74 (142)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            654

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.56  E-value=1.2e-14  Score=128.68  Aligned_cols=72  Identities=21%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEc
Q 009819          237 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  316 (524)
Q Consensus       237 ~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVT  316 (524)
                      ...+++|||||||||||++|||++++++.      ..++|+|+|++|+.+++.+.+++ +++.    ....+++++..++
T Consensus         6 ~~~~p~vliagGtGItP~~s~l~~~~~~~------~~~~v~l~~~~r~~~d~~~~~el-~~l~----~~~~~~~~~~~~~   74 (141)
T d1tvca2           6 RGMAPRYFVAGGTGLAPVVSMVRQMQEWT------APNETRIYFGVNTEPELFYIDEL-KSLE----RSMRNLTVKACVW   74 (141)
T ss_dssp             CSSSCEEEEEESSTTHHHHHHHHHHHHHT------CCSCEEEEEECSSSTTCCCHHHH-HHHH----HHSSSCEEEECCS
T ss_pred             CCCCcEEEEECchhHHHHHHHHHHHHHcC------CCCceEEEeecccchhhhhHHHH-HHHH----hhccccccceeec
Confidence            34567999999999999999999998762      24689999999999999665544 4432    2345788877776


Q ss_pred             CCC
Q 009819          317 RET  319 (524)
Q Consensus       317 r~~  319 (524)
                      +..
T Consensus        75 ~~~   77 (141)
T d1tvca2          75 HPS   77 (141)
T ss_dssp             SCS
T ss_pred             ccc
Confidence            543

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.53  E-value=2e-14  Score=125.99  Aligned_cols=71  Identities=24%  Similarity=0.394  Sum_probs=55.5

Q ss_pred             cccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCC
Q 009819          239 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  318 (524)
Q Consensus       239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~  318 (524)
                      .+++||||||+||||++||+++++.+   +   ..++|+|+|++|+.+++.+.+++ +++.    .+..++++...+++.
T Consensus         5 ~rplv~IAgG~GItP~~s~l~~~~~~---~---~~~~i~l~~~~r~~~d~~~~~el-~~l~----~~~~~~~~~~~~s~~   73 (133)
T d1krha2           5 KRPVLMLAGGTGIAPFLSMLQVLEQK---G---SEHPVRLVFGVTQDCDLVALEQL-DALQ----QKLPWFEYRTVVAHA   73 (133)
T ss_dssp             SSCEEEEEEGGGHHHHHHHHHHHHHH---C---CSSCEEEEEEESSGGGCCCHHHH-HHHH----HHCTTEEEEEEETTC
T ss_pred             CCCEEEEEccHhHHHHHHHHHHHHHc---C---CCCceEEEEeecchhHHHHHHHH-HHHH----HhCCceeeeeeeecc
Confidence            36799999999999999999998876   2   24679999999999999666554 4432    245678888888876


Q ss_pred             CC
Q 009819          319 TE  320 (524)
Q Consensus       319 ~~  320 (524)
                      +.
T Consensus        74 ~~   75 (133)
T d1krha2          74 ES   75 (133)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=6.2e-14  Score=123.34  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             cccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcCC
Q 009819          239 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  318 (524)
Q Consensus       239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr~  318 (524)
                      .+++||||||+||||+++|+++++...      ..++++|+|++|+.+++.+.+++.+..     .+..+++++.++++.
T Consensus         6 d~plv~IagGtGiaP~~s~l~~l~~~~------~~~~i~l~~~~r~~~d~~~~~el~~~~-----~~~~~~~~~~~~~~~   74 (143)
T d1gvha3           6 DTPVTLISAGVGQTPMLAMLDTLAKAG------HTAQVNWFHAAENGDVHAFADEVKELG-----QSLPRFTAHTWYRQP   74 (143)
T ss_dssp             TCCEEEEEEGGGGHHHHHHHHHHHHHT------CCSCEEEEEEESCTTTCCSHHHHHHHH-----HTSSSEEEEEEESSC
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHcC------CCceEEEEeecCCHHHHHHHHHHHHHH-----HhCCceEEEEEEecc
Confidence            367999999999999999999998762      246899999999999997766654432     255679999998865


Q ss_pred             CC
Q 009819          319 TE  320 (524)
Q Consensus       319 ~~  320 (524)
                      ..
T Consensus        75 ~~   76 (143)
T d1gvha3          75 SE   76 (143)
T ss_dssp             CH
T ss_pred             Cc
Confidence            43

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3e-13  Score=119.29  Aligned_cols=51  Identities=29%  Similarity=0.393  Sum_probs=42.5

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHH
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  294 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~el  294 (524)
                      ..++++|||||||||||+|||++++..   +   ..++|+|+|++|+.+++.+.+++
T Consensus         5 ~~k~lvlIa~GtGiaP~~s~l~~~~~~---~---~~~~v~l~~g~r~~~d~~~~~el   55 (148)
T d1fdra2           5 HCETLWMLATGTAIGPYLSILRLGKDL---D---RFKNLVLVHAARYAADLSYLPLM   55 (148)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHHHHCCSC---T---TCSEEEEEEEESSGGGCTTHHHH
T ss_pred             CCCEEEEEEcCeEHHHHHHHHHHHHHh---C---CCCcEEEEEecCcHHHHHHHHHh
Confidence            347899999999999999999987653   2   36789999999999999766554

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=2.1e-12  Score=112.36  Aligned_cols=69  Identities=26%  Similarity=0.333  Sum_probs=50.5

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr  317 (524)
                      ..+++||||||+||||++|||++++.+.      ..++|+|+|++|+.+++.+.+++ .++.    ....++......++
T Consensus         4 ~~rplv~IagGtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l-~~l~----~~~~~~~~~~~~~~   72 (135)
T d1qfja2           4 EERPMILIAGGTGFSYARSILLTALARN------PNRDITIYWGGREEQHLYDLCEL-EALS----LKHPGLQVVPVVEQ   72 (135)
T ss_dssp             SSSCEEEEEETTCHHHHHHHHHHHHHHC------TTCCEEEEEEESSGGGCTTHHHH-HHHH----HHCTTEEEEEEESS
T ss_pred             CCCCEEEEECceeHHHHHHHHHHHHHcc------cccceeEEEecccHhHHHHHHHH-HHHH----HhcCccceeeeecc
Confidence            4578999999999999999999998752      24679999999999999766554 3322    13344555444443

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.34  E-value=2.7e-12  Score=109.34  Aligned_cols=50  Identities=24%  Similarity=0.482  Sum_probs=42.1

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHH
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  294 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~el  294 (524)
                      ..+++||||||+||||++||++++..+       ..++++++|++|+.+++.+.+++
T Consensus         7 ~~~~~v~IagGtGiaP~~s~~~~l~~~-------~~~~~~l~~~~r~~~~~~~~~~l   56 (120)
T d2piaa2           7 RAKSFILVAGGIGITPMLSMARQLRAE-------GLRSFRLYYLTRDPEGTAFFDEL   56 (120)
T ss_dssp             TCSEEEEEEEGGGHHHHHHHHHHHHHH-------CSSEEEEEEEESCGGGCTTHHHH
T ss_pred             CCCCEEEEEecccHHHHHHHHHHHHHh-------cCCCeEEEEeeCCHHHhhhhHHH
Confidence            557899999999999999999998765       13579999999999998665544

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.8e-13  Score=118.20  Aligned_cols=120  Identities=17%  Similarity=0.273  Sum_probs=83.9

Q ss_pred             CcccCCCCCccccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCC
Q 009819          227 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  306 (524)
Q Consensus       227 GPYG~~~~~~~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~  306 (524)
                      .|.+.+......+++++||||||||||++|||++++.+.     ...++++|+|++|+.+++.+.++ ++++..   ...
T Consensus         6 ~p~~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~-----~~~~~i~L~~~~r~~~~~~~~~e-l~~l~~---~~~   76 (147)
T d1umka2           6 RPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP-----DDHTVCHLLFANQTEKDILLRPE-LEELRN---KHS   76 (147)
T ss_dssp             CSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT-----TCCCEEEEEEEESSGGGCTTHHH-HHHHHH---HCT
T ss_pred             cCCCCCCcccccCCeEEEEECCeecchHHHHHHHHHhcC-----CCCceEEEEEEeCccccchhHHH-Hhhhhh---hcC
Confidence            466666555567799999999999999999999987641     23568999999999999865544 444321   234


Q ss_pred             CceEEEEEEcCCCC-CCCcccccccccccccCCCCCCCceeeeeCCCCch
Q 009819          307 LNLETFIYVTRETE-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV  355 (524)
Q Consensus       307 ~~l~I~IyVTr~~~-~~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~  355 (524)
                      .++++.+.+++... .....+.++.+++....+...+....++||+..++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGP~~m~  126 (147)
T d1umka2          77 ARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMI  126 (147)
T ss_dssp             TTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCGGGCCEEEEESCHHHH
T ss_pred             cceEEEEEecccccCcccceeehHHHHHHHhcCCCcCCcEEEEeCCHHHH
Confidence            57888888877653 23334445444555544444556778999998754

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.23  E-value=1e-11  Score=109.92  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=51.1

Q ss_pred             cccEEEEecCcChHHHHHHHHHHHHHhhc---CCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEE
Q 009819          239 YENLILVAGGIGISPFLAILSDILHRINE---GKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYV  315 (524)
Q Consensus       239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~---~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyV  315 (524)
                      .+++||||||||||||+|+|++++.+...   .......++.|+|++|+.+++.+.+++. ++..   .......+++..
T Consensus         6 ~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~-~~~~---~~~~~~~~~~~~   81 (162)
T d2bmwa2           6 EANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELE-EIQQ---KYPDNFRLTYAI   81 (162)
T ss_dssp             TCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHH-HHHH---HCTTTEEEEEEE
T ss_pred             CCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHH-HHHH---hcCCceEEEEEe
Confidence            47899999999999999999998754221   1122356799999999999886555443 3221   122345555555


Q ss_pred             cCC
Q 009819          316 TRE  318 (524)
Q Consensus       316 Tr~  318 (524)
                      ++.
T Consensus        82 ~~~   84 (162)
T d2bmwa2          82 SRE   84 (162)
T ss_dssp             TTT
T ss_pred             ecc
Confidence            543

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.20  E-value=2.8e-11  Score=107.42  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=54.4

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr  317 (524)
                      ..+++||||||||||||+|||++++.+.... ....+++.|+|++|+.+++.+.+++. ++.+   .....+.+.+..++
T Consensus         7 ~~~plilIa~GtGIaP~~s~l~~~~~~~~~~-~~~~~~i~l~~g~r~~~d~~y~~e~~-~~~~---~~~~~~~~~~~~s~   81 (160)
T d1fnda2           7 PNATIIMLGTGTGIAPFRSFLWKMFFEKHDD-YKFNGLAWLFLGVPTSSSLLYKEEFE-KMKE---KAPDNFRLDFAVSR   81 (160)
T ss_dssp             TTCEEEEEEEGGGGHHHHHHHHHHHSCCBTT-BCCCSEEEEEEEESSGGGCTTHHHHH-HHHH---HCTTTEEEEEEETT
T ss_pred             CCCCEEEEECchhHHHHHHHHHHHHHhhccc-ccCCceEEEEeecCcHHHHHHHHHHH-HHHH---hcCCceeEEEEEcc
Confidence            4468999999999999999999987642211 23457899999999999986665543 3322   23345666666665


Q ss_pred             CC
Q 009819          318 ET  319 (524)
Q Consensus       318 ~~  319 (524)
                      ..
T Consensus        82 ~~   83 (160)
T d1fnda2          82 EQ   83 (160)
T ss_dssp             TC
T ss_pred             ch
Confidence            44

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.19  E-value=2.8e-11  Score=106.97  Aligned_cols=54  Identities=22%  Similarity=0.402  Sum_probs=44.8

Q ss_pred             cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH
Q 009819          237 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK  296 (524)
Q Consensus       237 ~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~  296 (524)
                      ...+++||||||||||||+||+++++.+..      .++++++|++|+.+++.+.+++..
T Consensus         5 ~p~~~lvlIagGtGIaP~~sil~~~~~~~~------~~~~~l~~g~r~~~~~~~~~el~~   58 (158)
T d1a8pa2           5 LPGKHLYMLSTGTGLAPFMSLIQDPEVYER------FEKVVLIHGVRQVNELAYQQFITE   58 (158)
T ss_dssp             CCCSEEEEEEEGGGGHHHHHHTTCHHHHHH------CSEEEEEEEESSGGGCTTHHHHHT
T ss_pred             CCCCCEEEEEchhhHHHHHHHHHHHHHhCC------CCceeeeeccccHHHHhhHHHHHH
Confidence            345799999999999999999999876522      468999999999999977766543

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.16  E-value=1.8e-11  Score=106.52  Aligned_cols=119  Identities=15%  Similarity=0.225  Sum_probs=74.3

Q ss_pred             cCCCCCc--cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCC
Q 009819          230 GHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  307 (524)
Q Consensus       230 G~~~~~~--~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~  307 (524)
                      |+|..+.  .+.+++||||||+||||++||++++++...    ...++++|+|++|+.+++.+.+++... ..   ....
T Consensus         1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~----~~~~~v~l~~g~r~~~~~~~~~~~~~~-~~---~~~~   72 (146)
T d2cnda2           1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP----EDHTEMHLVYANRTEDDILLRDELDRW-AA---EYPD   72 (146)
T ss_dssp             SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT----TCCCEEEEEEEESCGGGCTTHHHHHHH-HH---HCTT
T ss_pred             CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhCC----ccCceEEEEEeecccccchhHHHHhhH-HH---hCCC
Confidence            4454432  245789999999999999999999987521    235689999999999999776665433 11   1223


Q ss_pred             ceEEEEEEcCCCCC----CCcccccccccccccCCCCCCCceeeeeCCCCchh
Q 009819          308 NLETFIYVTRETEP----PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW  356 (524)
Q Consensus       308 ~l~I~IyVTr~~~~----~~~~~~i~~~~~~~~~P~ps~~s~s~i~G~~s~~~  356 (524)
                      .+.+..+.......    ....+.+..+++.+..+...+.+..++||+..++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp~~m~~  125 (146)
T d2cnda2          73 RLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMIQ  125 (146)
T ss_dssp             TEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHHHH
T ss_pred             ceeEEEeeccccCcccccccccCccchHHHHHhcccCCCCcEEEEECCHHHHH
Confidence            34444444333221    11222333334444444455667889999986544

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=5.6e-11  Score=106.91  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=51.4

Q ss_pred             cccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEc
Q 009819          237 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  316 (524)
Q Consensus       237 ~~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVT  316 (524)
                      ...+++||||||+|||||+|||++.+....... ....++.++|++|+.++..++.+++.++.    .....+++++.++
T Consensus         7 ~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~s   81 (165)
T d1f20a2           7 NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKG-MNPCPMVLVFGCRQSKIDHIYREETLQAK----NKGVFRELYTAYS   81 (165)
T ss_dssp             CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEESCTTTSCTTHHHHHHHH----HTTSEEEEEEEES
T ss_pred             CCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcC-CCCCCeEEEEeccccHHHHHHHHHHHHHH----hcCCceEEEEEEe
Confidence            345679999999999999999998765432111 12345666677766665445555555432    2445677877777


Q ss_pred             CCCC
Q 009819          317 RETE  320 (524)
Q Consensus       317 r~~~  320 (524)
                      +...
T Consensus        82 r~~~   85 (165)
T d1f20a2          82 REPD   85 (165)
T ss_dssp             SCTT
T ss_pred             cccc
Confidence            6543

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.11  E-value=8e-11  Score=103.92  Aligned_cols=57  Identities=19%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             cccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHH
Q 009819          239 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK  296 (524)
Q Consensus       239 ~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~  296 (524)
                      ..++||||||+|||||+|||++++.+.... .....++.|+|++|+.+|+.+.+++.+
T Consensus         3 ~~plllIa~GtGIaP~~s~l~~~~~~~~~~-~~~~~~i~l~~g~r~~~d~~y~~e~~~   59 (154)
T d1jb9a2           3 NATHIMIATGTGVAPFRGYLRRMFMEDVPN-YRFGGLAWLFLGVANSDSLLYDEEFTS   59 (154)
T ss_dssp             TCEEEEEEEGGGGHHHHHHHHHHHTEECTT-CCCCSEEEEEEEESSGGGCSSHHHHHH
T ss_pred             CCCEEEEEcceeHHHHHHHHHHHHHhcccc-ccCCceEEEEEEecccchhHHHHHHHH
Confidence            368999999999999999999987642211 234568999999999999866665543

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1e-10  Score=103.29  Aligned_cols=73  Identities=15%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr  317 (524)
                      ..+++||||||||||||+|||+++..+.      ..+++.++|++|+.++...+++++.++.    .....+++++.+++
T Consensus         5 ~~~plvlIa~GtGIaP~~s~l~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~el~~~~----~~~~~~~~~~~~s~   74 (153)
T d1ddga2           5 PETPVIMIGPGTGIAPFRAFMQQRAADE------APGKNWLFFGNPHFTEDFLYQVEWQRYV----KEGVLTRIDLAWSR   74 (153)
T ss_dssp             TTSCEEEECCGGGGHHHHHHHHHHHHHT------CCSCEEEEEEESCHHHHCTTHHHHHHHH----HTTSCCEEEEEETT
T ss_pred             CCCCEEEEECchhHHHHHHHHHHHHHhc------CCCceEEeecccCcHHHHHhHHHHHHHH----HcCCCceEEEEEEe
Confidence            3467999999999999999999988752      2456788888877666555666665543    24567888888877


Q ss_pred             CCC
Q 009819          318 ETE  320 (524)
Q Consensus       318 ~~~  320 (524)
                      ...
T Consensus        75 ~~~   77 (153)
T d1ddga2          75 DQK   77 (153)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            543

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.03  E-value=1.6e-10  Score=103.70  Aligned_cols=51  Identities=16%  Similarity=0.375  Sum_probs=42.1

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHh
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  297 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~e  297 (524)
                      ..++++||||||||||+++|++++.++        ..+++|+|++|+.+++.+.+ ++++
T Consensus         7 ~~~kvllIAgG~GitPl~sm~~~l~~~--------~~~v~l~~g~r~~~~~~~~~-el~~   57 (160)
T d1ep3b2           7 STDKILIIGGGIGVPPLYELAKQLEKT--------GCQMTILLGFASENVKILEN-EFSN   57 (160)
T ss_dssp             TTSEEEEEEEGGGSHHHHHHHHHHHHH--------TCEEEEEEEESSGGGCCCHH-HHHT
T ss_pred             CCCEEEEEEeeeeHHHHHHHHHHHHhc--------cCceEEEEecCCHHHHHHHH-HHHH
Confidence            457899999999999999999998764        35899999999999986544 4444

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=9.3e-10  Score=99.67  Aligned_cols=77  Identities=19%  Similarity=0.268  Sum_probs=53.6

Q ss_pred             ccccEEEEecCcChHHHHHHHHHHHHHhhcCCCCCCceEEEEEeccCCchHHHHHHHHHhccCCcccCCCceEEEEEEcC
Q 009819          238 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  317 (524)
Q Consensus       238 ~~~~vVLIAGGiGITP~lSiL~~Ll~~~~~~~~~~~rkV~LiW~vRs~~dl~wl~ell~ell~~~~~~~~~l~I~IyVTr  317 (524)
                      ...++||||||+|||||+|+|++.....+.+  ....+++|+|++|+.++-.+++++++++.    .....+++++..++
T Consensus         6 ~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~--~~~g~~~L~~G~R~~~~d~~y~~el~~~~----~~~~~~~~~~a~Sr   79 (160)
T d1ja1a3           6 STTPVIMVGPGTGIAPFMGFIQERAWLREQG--KEVGETLLYYGCRRSDEDYLYREELARFH----KDGALTQLNVAFSR   79 (160)
T ss_dssp             TTSCEEEECCGGGGHHHHHHHHHHHHHHHTT--CCCCCEEEEEEESCTTTCCTTHHHHHHHH----HTTSSSEEEEEETT
T ss_pred             CCCCEEEEEccHhHHHHHHHHHHHHHHHHcC--CCCCCEEEEEecCCccccHHHHHHHHHHH----HcCCCceeEEEeec
Confidence            3468999999999999999999865432222  23568999999998764234555555542    24456778777777


Q ss_pred             CCC
Q 009819          318 ETE  320 (524)
Q Consensus       318 ~~~  320 (524)
                      ...
T Consensus        80 ~~~   82 (160)
T d1ja1a3          80 EQA   82 (160)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            543

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=8.6e-10  Score=91.74  Aligned_cols=65  Identities=23%  Similarity=0.342  Sum_probs=49.6

Q ss_pred             CeeEEEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHHHHhcC
Q 009819            1 MWNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK   70 (524)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~~~~~~   70 (524)
                      +|++.+.+. ..++|+||||++|.++.   .+|||||++|+|++ ++.++|+||..  |.+|+.|.+.+...
T Consensus        17 v~~~~l~~~-~~~~f~~GQ~v~l~~~~---~~~r~ySias~p~~-~~~l~l~ir~~~~g~~s~~l~~~l~~G   83 (97)
T d1qfja1          17 VYRVRIVPD-AAFSFRAGQYLMVVMDE---RDKRPFSMASTPDE-KGFIELHIGASEINLYAKAVMDRILKD   83 (97)
T ss_dssp             CEEEEEEES-SCCCCCTTCEEEEESSS---SCEEEEECCSCTTS-TTCEEEEEC------CCHHHHHHHHHH
T ss_pred             EEEEEEeCC-ccCccCCCCEEEEEEcC---CCcEEEEEEEcCCC-CcEEEEEEeEccCCchhHhHhhcCCCC
Confidence            356666654 46899999999999875   46899999999965 47899999975  89999999887544

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.69  E-value=8.7e-09  Score=86.12  Aligned_cols=54  Identities=19%  Similarity=0.258  Sum_probs=46.4

Q ss_pred             CCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHH
Q 009819           10 KTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD   65 (524)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~   65 (524)
                      ...|+|+||||+.|+++..+...|||||++|+|.+  +.+.+++|+.  |.+|..|.+
T Consensus        26 ~~~~~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~~--~~~~~~i~~~~~G~~S~~L~~   81 (99)
T d1a8pa1          26 NPSLRFENGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKVQNGPLTSRLQH   81 (99)
T ss_dssp             CTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECCSSCSSHHHHTT
T ss_pred             CCCCccCCCcEEEEeccCCCceeEeeccccCCCCC--CcEEEEEEEeCCCChhHHHHh
Confidence            35799999999999999888788999999999976  6788888875  999997753

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=6.7e-08  Score=80.53  Aligned_cols=58  Identities=16%  Similarity=0.101  Sum_probs=46.7

Q ss_pred             EEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHH
Q 009819            5 GIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR   64 (524)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~   64 (524)
                      .+....+.++|.||||+.|+++..+...+|+||++|+|++  +.++++||+.  |..|+.|.
T Consensus        20 ~l~~~~p~~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~--~~~~~~vk~~~~G~~S~~l~   79 (99)
T d1fdra1          20 SLTVHAPVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTVPDGKLSPRLA   79 (99)
T ss_dssp             EEEEECCCCCCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECCTTCSSHHHHH
T ss_pred             EEEEcCCCCCCCCCcEEEeccCCCCCcEEEEEccCCCCCC--ceeEEEEEEecCcHHHHHHh
Confidence            3445556799999999999999888888999999999876  6799999986  88888774

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=98.53  E-value=6.5e-08  Score=80.03  Aligned_cols=53  Identities=15%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             CCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHHHH
Q 009819           11 TYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYI   67 (524)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~~~   67 (524)
                      ..+.|+||||+.|.++...  .+|+||++|+|.+  +.+.++|++.  |.+|..|.+.+
T Consensus        30 ~~~~f~pGQ~v~l~i~g~~--~~r~ys~~~~~~~--~~~~~~i~~~~~G~~s~~l~~~l   84 (100)
T d1krha1          30 PDIHFLAGQYVNVTLPGTT--ETRSYSFSSQPGN--RLTGFVVRNVPQGKMSEYLSVQA   84 (100)
T ss_dssp             CCCCCCTTCEEEEECTTSS--CEEEEECCSCTTC--SEEEEEEECCTTCHHHHHHHTTC
T ss_pred             cCCCCCCCEEEEEEECCcc--eeEEeeccCCCcc--CceEEEEEEeeCCchhhhhhccC
Confidence            3589999999999998654  6899999999865  6788999986  88888877644

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=98.45  E-value=7.3e-08  Score=81.30  Aligned_cols=54  Identities=20%  Similarity=0.280  Sum_probs=45.6

Q ss_pred             CCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHHHHHh
Q 009819           12 YLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL   68 (524)
Q Consensus        12 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~~~~   68 (524)
                      .|+|+||||+.|+++..  -.+|+||++|+|++ ++.++|+||..  |.+|+.|.+.+.
T Consensus        41 ~~~f~pGQ~v~l~~~g~--~~~R~ySias~p~~-~~~~~~~i~~~~~G~~S~~l~~~l~   96 (109)
T d1tvca1          41 GVKFEPGQFMDLTIPGT--DVSRSYSPANLPNP-EGRLEFLIRVLPEGRFSDYLRNDAR   96 (109)
T ss_dssp             CCSCCSCCEEEECTTSC--SSSEEECCBCCSSS-SCCEEEEECCCTTSSSHHHHHHHSS
T ss_pred             cccCCCCcEEEEEECCc--cccccceeccCCcC-CceeEEEEEEeCCchHHHHHHhhCC
Confidence            58999999999988753  36899999999875 46899999986  999999987664

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.32  E-value=2.5e-07  Score=76.53  Aligned_cols=62  Identities=18%  Similarity=0.068  Sum_probs=46.2

Q ss_pred             eeEEEeecCCCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--CchHHHHH
Q 009819            2 WNCGIGPIKTYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR   64 (524)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~   64 (524)
                      |.+.+........|+||||++|++++-+...++|||+++++.+ ++.+++++|..  |..|+.|.
T Consensus        20 ~~l~l~~~~~~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~-~~~i~~~i~~~~~g~~t~~l~   83 (101)
T d1ep3b1          20 FEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGDETTGTYKLS   83 (101)
T ss_dssp             EEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCCTTSHHHHHH
T ss_pred             EEEEEECCChhhccCCCceEEEEccCCccEeeccceeeeCCCC-CcEEEEEEeecCcchhhHHHH
Confidence            4444443333346899999999999877777899999999754 57899999975  45677553

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=98.31  E-value=6.7e-07  Score=75.09  Aligned_cols=63  Identities=16%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             eEEEeec--CCCCccCCCcEEEEEeCC--CCCccccceEeEecCCCCCCeEEEEEEee-------CchHHHHHHHH
Q 009819            3 NCGIGPI--KTYLRYNALSFFFLQVRE--LSWLQWHPFSVSSSPLEGKYHSSVLIKVL-------GEWTENLRDYI   67 (524)
Q Consensus         3 ~~~~~~~--~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~S~P~~~~~~i~~~IK~~-------G~~~~~~~~~~   67 (524)
                      +..+.+.  +..+.|.||||+.|+++.  -....+|+|||+|+|++  +.++++||+.       |..+..|.+.+
T Consensus        21 ~~~l~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~~--~~~~~~v~~~~~~~~~~G~~S~~l~~~l   94 (111)
T d1cqxa2          21 SFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNG--RTYRISVKREGGGPQPPGYVSNLLHDHV   94 (111)
T ss_dssp             EEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCCS--SCEEEEEECCCBTTBCCCHHHHHHHHHC
T ss_pred             EEEEEeCCcCcccCCCCCCEEEEEeecCCCcceeeeeccccCCccC--CCeEEEEEEecCCCcccchhHHHHHhcC
Confidence            4444443  345899999999999863  34467899999999865  6799999973       55666665544

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.2e-06  Score=72.91  Aligned_cols=64  Identities=11%  Similarity=0.159  Sum_probs=48.1

Q ss_pred             eeEEEeec--CCCCccCCCcEEEEEeCCCC--CccccceEeEecCCCCCCeEEEEEEee--CchHHHHHHHH
Q 009819            2 WNCGIGPI--KTYLRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYI   67 (524)
Q Consensus         2 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~~~~~~~~~   67 (524)
                      ++..+.+.  ...+.|.||||+.|+++.-+  ...+++||++|.+++  +.++|+||+.  |..|+.|.+.+
T Consensus        22 ~~~~l~~~d~~~~~~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~~--~~~~i~vk~~~~G~~S~~l~~~l   91 (107)
T d1gvha2          22 TSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDG--KGYRIAVKREEGGQVSNWLHNHA   91 (107)
T ss_dssp             EEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCCS--SCEEEEEECCTTCHHHHHHHHTC
T ss_pred             EEEEEEcCCcCcccCCCCCCEEEEEeeccccCceEEeeccccCCCCC--CceEEEEEEcCCcchhHHHHhcC
Confidence            44555554  24579999999999987543  346799999999865  6799999974  88888776654

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=97.86  E-value=1.5e-05  Score=69.25  Aligned_cols=55  Identities=11%  Similarity=0.007  Sum_probs=41.4

Q ss_pred             eeEEEeecCCCCccCCCcEEEEEeCCC----CCccccceEeEecCCCC---CCeEEEEEEee
Q 009819            2 WNCGIGPIKTYLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLEG---KYHSSVLIKVL   56 (524)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----s~~~~~~~~~~S~P~~~---~~~i~~~IK~~   56 (524)
                      +...+......|.|.||||+-|.++..    ....++.|||+|+|.+.   .+.++++||+.
T Consensus        33 ~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~~~~~~~~~~Vk~~   94 (133)
T d2bmwa1          33 QHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQL   94 (133)
T ss_dssp             EEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEECC
T ss_pred             EEEEEccCCccCCccCCCEEEEEeccccccccccceeeeeecCCCcCCCCCccEEEEEEEec
Confidence            344554445679999999999998743    34578999999998753   35799999964

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.72  E-value=3.4e-05  Score=67.52  Aligned_cols=63  Identities=19%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             eeEEEeecCCCCccCCCcEEEEEeCCCC----CccccceEeEecCCCC---CCeEEEEEEee-----------CchHHHH
Q 009819            2 WNCGIGPIKTYLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLEG---KYHSSVLIKVL-----------GEWTENL   63 (524)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~S~P~~~---~~~i~~~IK~~-----------G~~~~~~   63 (524)
                      |.+.+.. ...|+|.||||+-|.++...    ..+++.|||+|+|.+.   ...++++||+.           |-.+..|
T Consensus        40 ~~i~~~~-~~~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L  118 (136)
T d1fnda1          40 WHMVFSH-EGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFL  118 (136)
T ss_dssp             EEEEEEC-TTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHH
T ss_pred             EEEeccc-CCCCcccCCCEEEEECCCcccccccceeEEeecccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehhh
Confidence            4555543 45799999999999987432    3578999999999753   35799999863           6666666


Q ss_pred             HH
Q 009819           64 RD   65 (524)
Q Consensus        64 ~~   65 (524)
                      .+
T Consensus       119 ~d  120 (136)
T d1fnda1         119 CD  120 (136)
T ss_dssp             HT
T ss_pred             cc
Confidence            54

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=97.51  E-value=4.5e-05  Score=63.71  Aligned_cols=45  Identities=20%  Similarity=0.106  Sum_probs=38.7

Q ss_pred             CCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee
Q 009819           11 TYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL   56 (524)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~   56 (524)
                      ..+.|.+|||+.|+++.-....+++||++|.+++ ++.++|+||..
T Consensus        29 ~~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~~~~~~~ik~~   73 (114)
T d2cnda1          29 QVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVY   73 (114)
T ss_dssp             CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECC
T ss_pred             cccCccceEEEEEEeecccceEEeeeccCCCCCC-CCEEEEEEEec
Confidence            3578999999999998877777899999999875 47899999974

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=97.30  E-value=0.00016  Score=59.94  Aligned_cols=66  Identities=14%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             eeEEEeecC-CCC-ccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEee--Cch-HHHHHHHHhcCC
Q 009819            2 WNCGIGPIK-TYL-RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW-TENLRDYILSKS   71 (524)
Q Consensus         2 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~~--G~~-~~~~~~~~~~~~   71 (524)
                      |...+.+-. ..+ .|.||||+-|.++.   ..+.+|||+|+|.+ .+.++|+||+.  |.. ++.|.+.+...+
T Consensus        24 ~~~~l~~~~g~~lp~f~pGQ~v~v~~~~---~~~R~YSl~s~p~~-~~~~~i~Vk~~~~g~~~S~~l~~~l~~Gd   94 (103)
T d2piaa1          24 WSFELTDPQGAPLPPFEAGANLTVAVPN---GSRRTYSLCNDSQE-RNRYVIAVKRDSNGRGGSISFIDDTSEGD   94 (103)
T ss_dssp             EEEEEECTTCCCCCCCCTTCEEEEECTT---SCEEEEECCSCTTC-CSEEEEEEECCTTSCSHHHHHHHSCCTTC
T ss_pred             EEEEEECCCCCcCCCCCCCceEEEEEec---ceeEEEEEecCCCC-CCEEEEEEEEECCCccchHHHHhcCCCCC
Confidence            444454332 334 89999999999975   24699999999865 47899999995  554 677776665443

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00014  Score=61.32  Aligned_cols=44  Identities=25%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             CCCccCCCcEEEEEeCCCCCccccceEeEecCCCCCCeEEEEEEe
Q 009819           11 TYLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV   55 (524)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~S~P~~~~~~i~~~IK~   55 (524)
                      ..+.|.+|||+.+++..-+....++||++|.+.+ .+.+++.||.
T Consensus        39 ~~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~g~~~~~vk~   82 (124)
T d1umka1          39 HILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKV   82 (124)
T ss_dssp             CBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEEC
T ss_pred             cccccceeeEEEEEecccceeEEEeeccCCcccC-CceEEEEEEe
Confidence            3468999999999988766667899999999865 4789999995

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=94.53  E-value=0.055  Score=47.69  Aligned_cols=54  Identities=9%  Similarity=-0.047  Sum_probs=40.1

Q ss_pred             eeEEEeecCCCCccCCCcEEEEEeCC------CCCccccceEeEecCCCC---CCeEEEEEEee
Q 009819            2 WNCGIGPIKTYLRYNALSFFFLQVRE------LSWLQWHPFSVSSSPLEG---KYHSSVLIKVL   56 (524)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~s~~~~~~~~~~S~P~~~---~~~i~~~IK~~   56 (524)
                      |.+++.. ...|.|.+|||+=|..+.      +..++-+-|||+|+|.+.   .+.+.++||..
T Consensus        49 ~hie~dl-~~~~~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~~v  111 (157)
T d1jb9a1          49 CHIVIDH-GGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRA  111 (157)
T ss_dssp             EEEEEEC-TTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECC
T ss_pred             EEEEecC-CCCccEecCceEEEEcCCccccccCccCCcCEEEecCCCcCCCCCCCEEEEEEEEe
Confidence            4556654 348999999999998763      345677899999999753   24688889864