Citrus Sinensis ID: 009829

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
MIKQILKKLPRKSSKTGDNREHGRNSVTHSIASTGSRSSDLGKSKSGNLNTVSPQMNDSASDAVQDGNKIQLGMNSKLNGNLVLSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEGNVPINKLVPVPQKVQPSPSSG
cHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
cHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEccccccccccccc
MIKQILKKlprkssktgdnrehgrnsvthsiastgsrssdlgksksgnlntvspqmndsasdavqdgnkiqlgmnsklngnlvlssydtlpalkdvpsaekQNLFIKKLNLCCVvfdftdptknlKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRtlipqprenkivdgvdleeeepamdpawphLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLdlfdsedprEREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIIngfalplkeEHKVFLVRVLiplhkpkslaMYHQQLSYCITQFVEKDCKLADAVIRGLLKywpvtnsskEVMFLNELEEVLeatqlpefqrcMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELaegnvpinklvpvpqkvqpspssg
mikqilkklprkssktgdnrehgrnsvthsiastgsrssdlgkskSGNLNTVSPQMNDSASDAVQDGNKIQLGMNSKLNGNLVLSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTdptknlkekeiKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLfrtlipqprenKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLldlfdsedpREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFreyeskegeieaRREATWKRLEELaegnvpinklvpvpqkvqpspssg
MIKQILKKLPRKSSKTGDNREHGRNSVTHSIASTGSRSSDLGKSKSGNLNTVSPQMNDSASDAVQDGNKIQLGMNSKLNGNLVLSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEGNVPINKLvpvpqkvqpspssG
*****************************************************************************LNGNLVLSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVD********DPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYE*************WKRL***************************
*******************************************************************************************ALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECL*******************TWKRLEEL************************
MIKQILKKL****************SVTHSIA************KSGNLNTVSPQMNDSASDAVQDGNKIQLGMNSKLNGNLVLSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEGNVPINKLVPVP**********
**************************************************************************************YDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQP*****VDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEGN********************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIKQILKKLPRKSSKTGDNREHGRNSVTHSIASTGSRSSDLGKSKSGNLNTVSPQMNDSASDAVQDGNKIQLGMNSKLNGNLVLSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEGNVPINKLVPVPQKVQPSPSSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query524 2.2.26 [Sep-21-2011]
Q9LU89510 Serine/threonine protein yes no 0.950 0.976 0.777 0.0
Q8LF36492 Serine/threonine protein no no 0.866 0.922 0.790 0.0
Q8RW96522 Serine/threonine protein no no 0.967 0.971 0.662 0.0
Q9LVE2546 Serine/threonine protein no no 0.982 0.943 0.652 0.0
Q9ZQY6477 Serine/threonine protein no no 0.895 0.983 0.625 1e-178
O04376499 Serine/threonine protein no no 0.797 0.837 0.703 1e-174
O04375495 Serine/threonine protein no no 0.923 0.977 0.595 1e-170
Q93YV6500 Serine/threonine protein no no 0.912 0.956 0.556 1e-159
Q9SV41497 Serine/threonine protein no no 0.790 0.832 0.620 1e-150
Q28653586 Serine/threonine-protein yes no 0.786 0.703 0.575 1e-142
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function desciption
 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/508 (77%), Positives = 435/508 (85%), Gaps = 10/508 (1%)

Query: 1   MIKQILKKLPRKSSKTGDNREHGRNSVTHSIASTGS------RSSDLGKSKSGNLNTVSP 54
           M KQIL KLP K S   ++R  GR    HS +S+ +      +S+D G +KS   N  SP
Sbjct: 1   MWKQILSKLPNKKSSKHEHR--GREHGGHSSSSSHTSGASTSKSTDNGAAKSHAKNA-SP 57

Query: 55  QMNDSASDA-VQDGNKIQLGMNSKLNGNLVLSSYDTLPALKDVPSAEKQNLFIKKLNLCC 113
               +ASD+  +DGN    G N+  N N V + Y+ LP+ KDVP+ EKQNLFIKKLNLC 
Sbjct: 58  AGKSAASDSGFKDGNLKSSGNNNNNNNNGVFTPYEALPSFKDVPNTEKQNLFIKKLNLCR 117

Query: 114 VVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQP 173
           VVFDFTDPTKN+KEK+IKRQ LLELVDYV S NGKF+E  +QE V+MVSAN+FRTL PQP
Sbjct: 118 VVFDFTDPTKNIKEKDIKRQTLLELVDYVNSPNGKFSEVGIQEVVRMVSANIFRTLNPQP 177

Query: 174 RENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLD 233
           RENK++D +DLEEEEP+MD AWPHLQLVYE  LRFVASPETD KLAKRYIDQSF+L+LLD
Sbjct: 178 RENKVIDALDLEEEEPSMDLAWPHLQLVYELFLRFVASPETDTKLAKRYIDQSFVLRLLD 237

Query: 234 LFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILG 293
           LFDSEDPRER+ LKTILHRIYGKFMVHRPFIRK+INNIFYRF+FETE+HNGIAEFLEILG
Sbjct: 238 LFDSEDPRERDCLKTILHRIYGKFMVHRPFIRKSINNIFYRFVFETEKHNGIAEFLEILG 297

Query: 294 SIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGL 353
           SIINGFALPLK+EHKVFLVRVLIPLHKPK L MYHQQLSYCITQFVEKDCKLAD VIRGL
Sbjct: 298 SIINGFALPLKDEHKVFLVRVLIPLHKPKCLQMYHQQLSYCITQFVEKDCKLADTVIRGL 357

Query: 354 LKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFL 413
           LKYWPVTNSSKEVMFLNELEEVLEATQ PEFQRCMVPLF+QIARCLNSLHFQVAERALFL
Sbjct: 358 LKYWPVTNSSKEVMFLNELEEVLEATQPPEFQRCMVPLFRQIARCLNSLHFQVAERALFL 417

Query: 414 WNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECL 473
           WNN+HIENLI+QNRKVILPIIFPALE+NA+ HWNQAVHSLTLNVRKIF DLDPELFKECL
Sbjct: 418 WNNNHIENLIMQNRKVILPIIFPALERNAQKHWNQAVHSLTLNVRKIFHDLDPELFKECL 477

Query: 474 AKFREYESKEGEIEARREATWKRLEELA 501
           AKF+E ESK  E EA+REATWKRLEEL 
Sbjct: 478 AKFKEDESKAAETEAKREATWKRLEELG 505
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function description
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
224100071522 predicted protein [Populus trichocarpa] 0.994 0.998 0.780 0.0
449450399525 PREDICTED: serine/threonine protein phos 0.986 0.984 0.775 0.0
255547834527 protein phosphatase 2a, regulatory subun 1.0 0.994 0.798 0.0
225425906515 PREDICTED: serine/threonine protein phos 0.979 0.996 0.769 0.0
224107677526 predicted protein [Populus trichocarpa] 1.0 0.996 0.739 0.0
147834659535 hypothetical protein VITISV_019650 [Viti 0.971 0.951 0.769 0.0
255547836524 protein phosphatase 2a, regulatory subun 0.998 0.998 0.750 0.0
224107675507 predicted protein [Populus trichocarpa] 0.965 0.998 0.764 0.0
15230961510 protein phosphatase 2A regulatory subuni 0.950 0.976 0.777 0.0
449524868524 PREDICTED: serine/threonine protein phos 0.998 0.998 0.721 0.0
>gi|224100071|ref|XP_002311731.1| predicted protein [Populus trichocarpa] gi|222851551|gb|EEE89098.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/525 (78%), Positives = 456/525 (86%), Gaps = 4/525 (0%)

Query: 1   MIKQILKKLPRKSSKTGDNREHGRNSVTHSIASTGSRSSDLGKSKSGNLNTVSPQMNDSA 60
           M+KQ+L KLPRKSSK+  NR+HG N   +S ASTGSRSS+ GKS + N+++V+  +N+SA
Sbjct: 1   MLKQLLGKLPRKSSKSTANRDHGGNHTANSNASTGSRSSN-GKSANSNISSVA--VNNSA 57

Query: 61  SDAVQD-GNKIQLGMNSKLNGNLVLSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFT 119
            D  Q+ GNKI  G+NSKLNG+L  S Y+ LP  KDVPS+EKQ+LFI+KLN+CCVVFDFT
Sbjct: 58  PDVSQNLGNKIHQGVNSKLNGDLGFSQYEGLPGFKDVPSSEKQSLFIRKLNMCCVVFDFT 117

Query: 120 DPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIV 179
           +P KNLKEKEIKRQ L ELVDYVTS +GKF+ET MQE +KMVSANLFRT  PQPRENK+V
Sbjct: 118 EPMKNLKEKEIKRQTLQELVDYVTSVSGKFSETAMQEVMKMVSANLFRTFTPQPRENKVV 177

Query: 180 DGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSED 239
           DGVDLEE+EP+MD AWPHLQ+VYE  LRFV+S ETDAKLAKRYIDQSFILKLLDLFDSED
Sbjct: 178 DGVDLEEDEPSMDSAWPHLQIVYELFLRFVSSAETDAKLAKRYIDQSFILKLLDLFDSED 237

Query: 240 PREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGF 299
           PREREYLKTILHRIYGKFMVHRPFIRKAIN+IFY+FIFETE++NGIAE LEILGSIINGF
Sbjct: 238 PREREYLKTILHRIYGKFMVHRPFIRKAINSIFYQFIFETEKYNGIAELLEILGSIINGF 297

Query: 300 ALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPV 359
           ALPLKEEHK+FLVR +IPLHKP+ LAMYHQ LSYCITQFVEKDCKLAD VIRGLLKYWP+
Sbjct: 298 ALPLKEEHKMFLVRAMIPLHKPRCLAMYHQPLSYCITQFVEKDCKLADTVIRGLLKYWPI 357

Query: 360 TNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHI 419
           TNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQ+ARCLNS HFQVAERALFLWNND I
Sbjct: 358 TNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQLARCLNSSHFQVAERALFLWNNDPI 417

Query: 420 ENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREY 479
           ENLIIQNRKVILPIIFPALEKN RNHWNQAV SLTLNVRKIF DLD ELF ECL KF+E 
Sbjct: 418 ENLIIQNRKVILPIIFPALEKNVRNHWNQAVRSLTLNVRKIFEDLDHELFNECLLKFQED 477

Query: 480 ESKEGEIEARREATWKRLEELAEGNVPINKLVPVPQKVQPSPSSG 524
           E KE EI+AR EA WKRLEE+A      + +V  P+K     +SG
Sbjct: 478 EEKEVEIKARSEAAWKRLEEIATQKAASDAMVVAPRKALTCSASG 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449450399|ref|XP_004142950.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] gi|449494490|ref|XP_004159560.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547834|ref|XP_002514974.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223546025|gb|EEF47528.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225425906|ref|XP_002266932.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107677|ref|XP_002314559.1| predicted protein [Populus trichocarpa] gi|222863599|gb|EEF00730.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147834659|emb|CAN66032.1| hypothetical protein VITISV_019650 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547836|ref|XP_002514975.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223546026|gb|EEF47529.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224107675|ref|XP_002314558.1| predicted protein [Populus trichocarpa] gi|222863598|gb|EEF00729.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15230961|ref|NP_189231.1| protein phosphatase 2A regulatory subunit B' eta [Arabidopsis thaliana] gi|79313549|ref|NP_001030770.1| protein phosphatase 2A regulatory subunit B' eta [Arabidopsis thaliana] gi|75274192|sp|Q9LU89.1|2A5N_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform; Short=AtB' eta; Short=PP2A, B' subunit, eta isoform gi|14194123|gb|AAK56256.1|AF367267_1 AT3g26020/MPE11_17 [Arabidopsis thaliana] gi|9279607|dbj|BAB01065.1| protein phosphatase 2A regulatory subunit B' [Arabidopsis thaliana] gi|16323340|gb|AAL15383.1| AT3g26020/MPE11_17 [Arabidopsis thaliana] gi|222424130|dbj|BAH20024.1| AT3G26020 [Arabidopsis thaliana] gi|332643581|gb|AEE77102.1| protein phosphatase 2A regulatory subunit B' eta [Arabidopsis thaliana] gi|332643582|gb|AEE77103.1| protein phosphatase 2A regulatory subunit B' eta [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449524868|ref|XP_004169443.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.896 0.955 0.778 5.2e-210
TAIR|locus:2092175529 AT3G26020 [Arabidopsis thalian 0.585 0.580 0.706 1.4e-191
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.935 0.938 0.680 1.1e-179
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.950 0.912 0.675 6.3e-179
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.828 0.909 0.676 1.3e-165
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.797 0.837 0.703 1.5e-163
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.795 0.842 0.673 2e-160
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.885 0.928 0.577 2.2e-150
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.927 0.977 0.546 6.1e-142
FB|FBgn0042693984 PP2A-B' "PP2A-B'" [Drosophila 0.788 0.419 0.573 1.4e-133
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1950 (691.5 bits), Expect = 5.2e-210, Sum P(2) = 5.2e-210
 Identities = 375/482 (77%), Positives = 421/482 (87%)

Query:    25 NSVTHSIASTG-SRSSDLGKSKSGNLNTVS-PQMNDSASDAVQDGNKIQLGMNSKLNGNL 82
             +S  HS +S+  S+SSD G SKSGN  T + P +  SA    ++GN        K NGN 
Sbjct:    14 SSKNHSSSSSSTSKSSDNGASKSGNSQTQNAPPVKPSADSGFKEGNL-------KGNGN- 65

Query:    83 VLSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYV 142
               + Y+ LP  KDVP+AEKQNLF++KL+LCCVVFDF+DPTKN+KEK+IKRQ LLELVDYV
Sbjct:    66 GFTPYEALPGFKDVPNAEKQNLFVRKLSLCCVVFDFSDPTKNVKEKDIKRQTLLELVDYV 125

Query:   143 TSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVY 202
              S NGKF+ETV+QE V+MVS N+FRTL PQPRENK++D +DLEEEEP+MDP WPHLQLVY
Sbjct:   126 ASPNGKFSETVIQEVVRMVSVNIFRTLNPQPRENKVIDALDLEEEEPSMDPTWPHLQLVY 185

Query:   203 EFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRP 262
             E LLR +ASPETD KLAK+YIDQSF+ +LLDLFDSEDPRER+ LKT+LHRIYGKFMVHRP
Sbjct:   186 EILLRLIASPETDTKLAKKYIDQSFVSRLLDLFDSEDPRERDCLKTVLHRIYGKFMVHRP 245

Query:   263 FIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPK 322
             FIRK+INNIFYRF+FETE+HNGIAEFLEILGSIINGFALPLK+EHKVFLVR L+PLHKPK
Sbjct:   246 FIRKSINNIFYRFVFETEKHNGIAEFLEILGSIINGFALPLKDEHKVFLVRALVPLHKPK 305

Query:   323 SLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLP 382
             SL MYHQQLSYCITQFVEKDCKLAD VIRGLLK WPVTNSSKEVMFLNELEEVLEATQ P
Sbjct:   306 SLQMYHQQLSYCITQFVEKDCKLADTVIRGLLKSWPVTNSSKEVMFLNELEEVLEATQPP 365

Query:   383 EFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNA 442
             EFQRCMVPLF+Q+ARCLNSLHFQVAERALFLWNNDHIENLI+QNRKVILPIIFPALE+N 
Sbjct:   366 EFQRCMVPLFRQVARCLNSLHFQVAERALFLWNNDHIENLIMQNRKVILPIIFPALERNT 425

Query:   443 RNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAE 502
             + HWNQAVHSLTLNV+KIF D+D ELFK+CLAKFRE ESKE EI A+REATWKRLEE+  
Sbjct:   426 QKHWNQAVHSLTLNVQKIFNDIDAELFKDCLAKFREDESKEAEIGAKREATWKRLEEI-- 483

Query:   503 GN 504
             GN
Sbjct:   484 GN 485
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
GO:0005777 "peroxisome" evidence=IDA
TAIR|locus:2092175 AT3G26020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q147382A5D_HUMANNo assigned EC number0.57550.78620.6843yesno
Q286532A5D_RABITNo assigned EC number0.57550.78620.7030yesno
Q9LU892A5N_ARATHNo assigned EC number0.77750.95030.9764yesno
Q8LF362A5T_ARATHNo assigned EC number0.79040.86640.9227nono
Q104282AD1_SCHPONo assigned EC number0.51870.79960.7645yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VIII001591
serine/threonine protein phosphatase 2A (522 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 0.0
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 1e-62
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 2e-10
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  601 bits (1553), Expect = 0.0
 Identities = 253/411 (61%), Positives = 320/411 (77%), Gaps = 9/411 (2%)

Query: 93  LKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSAN--GKFN 150
           L DVPS E ++LF+KKL  CCV+ DF+DP  +LK KEIKRQ L E+VDYV++++  GK  
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 151 ETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVA 210
           E +  E  KM++ N+FR L P P  +     +D +++EP ++P+WPHL LVYE LLRF+ 
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPIPNPS-----LDPDDDEPFLEPSWPHLSLVYEILLRFIE 115

Query: 211 SPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINN 270
           SP  D    K+YID SFI +LLDLFDS DPRER+ LKT LHRIYGKF   RPFIRKAIN+
Sbjct: 116 SPPFDPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINS 173

Query: 271 IFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQ 330
           I YRFI+ETE+ NG+AE LEILGSIINGFALPLKEEHK FL++VL+PLHK K L++YHQQ
Sbjct: 174 ILYRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQ 233

Query: 331 LSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVP 390
           LSYC+ QF+EKD  LA+ VIRGLLK+WPVTNSSKEV+FL+ELEE+LE     EFQ+ MVP
Sbjct: 234 LSYCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVP 293

Query: 391 LFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAV 450
           LF+ +ARC++S HFQVAERAL LWNN++  NLI  N K+ILPI+FPAL +NA+NHWNQ+V
Sbjct: 294 LFKILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSV 353

Query: 451 HSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELA 501
            +L LNV K+  ++DP+LF EC  K++E E+KE + E +R+ TW R+ E A
Sbjct: 354 RNLALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEAA 404

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 524
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.37
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 90.9
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-165  Score=1269.28  Aligned_cols=418  Identities=71%  Similarity=1.163  Sum_probs=412.6

Q ss_pred             ccccccCCCCCCCChHHhHHHHHHHHhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 009829           84 LSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSA  163 (524)
Q Consensus        84 ~~~l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~  163 (524)
                      ..++++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.+++++++|.+|+++++|+++
T Consensus        39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~  118 (457)
T KOG2085|consen   39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV  118 (457)
T ss_pred             CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            45599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHH
Q 009829          164 NLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPRER  243 (524)
Q Consensus       164 NiFR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRER  243 (524)
                      ||||+|||..+++    .+|+|||||++|++|||||+||++|+||++||++|+++||+||||+||++||+||||||||||
T Consensus       119 nifR~lpp~~n~~----~~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER  194 (457)
T KOG2085|consen  119 NIFRTLPPSVNPT----GFDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER  194 (457)
T ss_pred             HhhccCCcccCCC----cCCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence            9999999998765    399999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCC
Q 009829          244 EYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKS  323 (524)
Q Consensus       244 d~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~  323 (524)
                      |+|||+|||||||||+||+|||++||||||+||||||+|||||||||||||||||||+|||||||+||.||||||||+++
T Consensus       195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~  274 (457)
T KOG2085|consen  195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS  274 (457)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCc
Q 009829          324 LAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLH  403 (524)
Q Consensus       324 ~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~h  403 (524)
                      ++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||+|||||||+++|.||++||+|||+|||+|++|+|
T Consensus       275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H  354 (457)
T KOG2085|consen  275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH  354 (457)
T ss_pred             ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 009829          404 FQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKE  483 (524)
Q Consensus       404 fQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~  483 (524)
                      ||||||||++|||+||++||++|..+|+|||||+|||++++|||++|+++++||+|+|||||+.||++|+++|++++.++
T Consensus       355 FQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~  434 (457)
T KOG2085|consen  355 FQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE  434 (457)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Q 009829          484 GEIEARREATWKRLEELAEGNV  505 (524)
Q Consensus       484 ~~~~~kr~~~W~~l~~~A~~~~  505 (524)
                      ++++++|+++|++||++|..++
T Consensus       435 ~~~~~~re~~W~~le~~~~~~~  456 (457)
T KOG2085|consen  435 KETEEKREETWKRLEELAAENP  456 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999998765

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-138
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-136
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 1e-134
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-127
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 1e-125
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  487 bits (1254), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/413 (56%), Positives = 307/413 (74%), Gaps = 3/413 (0%)
Query: 93  LKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNE 151
           ++DVP A+++ LFI+KL  CCV+FDF +DP  +LK KE+KR  L E+V+Y+T       E
Sbjct: 30  IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITE 89
Query: 152 TVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVAS 211
            +  E V M + N+FRTL   P  N      D EE+EP ++ AWPHLQLVYEF LRF+ S
Sbjct: 90  PIYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 147
Query: 212 PETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNI 271
           P+    +AK+YIDQ F+L+LL+LFDSEDPRER++LKT LHRIYGKF+  R +IRK INNI
Sbjct: 148 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207
Query: 272 FYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQL 331
           FYRFI+ETE HNGIAE LEILGSIINGFALPLKEEHK+FL++VL+PLHK KSL++YH QL
Sbjct: 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 267
Query: 332 SYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPL 391
           +YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFLNELEE+L+  +  EF + M PL
Sbjct: 268 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 327
Query: 392 FQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVH 451
           F+Q+A+C++S HFQVAERAL+ WNN++I +LI  N   ILPI+FP+L +N++ HWN+ +H
Sbjct: 328 FRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIH 387
Query: 452 SLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEGN 504
            L  N  K+F +++ +LF +C  +F+  + KE      RE  W ++E LA+ N
Sbjct: 388 GLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKAN 440
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 0.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 0.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-170
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  547 bits (1411), Expect = 0.0
 Identities = 233/419 (55%), Positives = 308/419 (73%), Gaps = 3/419 (0%)

Query: 87  YDTLPALKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSA 145
              L  ++DVP A+++ LFI+KL  CCV+FDF +DP  +LK KE+KR  L E+V+Y+T  
Sbjct: 24  PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHN 83

Query: 146 NGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFL 205
                E +  E V M + N+FRTL P    N      D EE+EP ++ AWPHLQLVYEF 
Sbjct: 84  RNVITEPIYPEVVHMFAVNMFRTLPPSS--NPTGAEFDPEEDEPTLEAAWPHLQLVYEFF 141

Query: 206 LRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIR 265
           LRF+ SP+    +AK+YIDQ F+L+LL+LFDSEDPRER++LKT LHRIYGKF+  R +IR
Sbjct: 142 LRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR 201

Query: 266 KAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLA 325
           K INNIFYRFI+ETE HNGIAE LEILGSIINGFALPLKEEHK+FL++VL+PLHK KSL+
Sbjct: 202 KQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 261

Query: 326 MYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQ 385
           +YH QL+YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFLNELEE+L+  +  EF 
Sbjct: 262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFV 321

Query: 386 RCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNH 445
           + M PLF+Q+A+C++S HFQVAERAL+ WNN++I +LI  N   ILPI+FP+L +N++ H
Sbjct: 322 KIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTH 381

Query: 446 WNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEGN 504
           WN+ +H L  N  K+F +++ +LF +C  +F+  + KE      RE  W ++E LA+ N
Sbjct: 382 WNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKAN 440
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
1qgr_A 876 Protein (importin beta subunit); transport recepto 93.16
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 92.66
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 91.38
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 90.37
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 90.25
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 89.75
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 89.46
1qgr_A 876 Protein (importin beta subunit); transport recepto 87.91
2x19_B963 Importin-13; nuclear transport, protein transport; 87.73
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 85.61
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 81.85
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 81.49
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
Probab=100.00  E-value=3.1e-146  Score=1147.66  Aligned_cols=401  Identities=56%  Similarity=1.020  Sum_probs=395.0

Q ss_pred             ChHHhHHHHHHHHhcCcccccc-cCCCCCchhHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhcccCCCCCCCC
Q 009829           97 PSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRE  175 (524)
Q Consensus        97 ~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~NiFR~lPp~~~~  175 (524)
                      |++||++||++||++||++||| +||.+|+++||+||+||+||+|||+++++++||++|+++++||++||||++||++++
T Consensus         1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~   80 (403)
T 3fga_B            1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP   80 (403)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred             ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            6789999999999999999999 899999999999999999999999999999999999999999999999999998766


Q ss_pred             CCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 009829          176 NKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYG  255 (524)
Q Consensus       176 ~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYg  255 (524)
                      ++  .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+|||+||||||
T Consensus        81 ~~--~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~  158 (403)
T 3fga_B           81 TG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG  158 (403)
T ss_dssp             CS--TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cc--ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            43  6899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHH
Q 009829          256 KFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCI  335 (524)
Q Consensus       256 Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi  335 (524)
                      ||+++|+|||++|||+||+|||||++|||||||||||||||||||+|||+||++||.||||||||+++++.||+||+|||
T Consensus       159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv  238 (403)
T 3fga_B          159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV  238 (403)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhc
Q 009829          336 TQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWN  415 (524)
Q Consensus       336 ~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWn  415 (524)
                      +||++|||+|++.|++|||||||+|||+||||||+||++||+.++|++|+++++|||+|||+|++|+|||||||||++||
T Consensus       239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn  318 (403)
T 3fga_B          239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN  318 (403)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred             HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009829          416 NDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWK  495 (524)
Q Consensus       416 Ne~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~~~~~~kr~~~W~  495 (524)
                      |++|+++|++|++.|+|+|+|+|++++++|||++||++|+||+|+|||||+++|++|+++|+++++++++++++|+++|+
T Consensus       319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~  398 (403)
T 3fga_B          319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV  398 (403)
T ss_dssp             CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 009829          496 RLEE  499 (524)
Q Consensus       496 ~l~~  499 (524)
                      +||+
T Consensus       399 ~~~~  402 (403)
T 3fga_B          399 KIEN  402 (403)
T ss_dssp             TCSC
T ss_pred             HHhc
Confidence            9874
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 524
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-180
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  508 bits (1311), Expect = e-180
 Identities = 209/345 (60%), Positives = 266/345 (77%), Gaps = 3/345 (0%)

Query: 93  LKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNE 151
           ++DVP A+++ LFI+KL  CCV+FDF +DP  +LK KE+KR  L E+V+Y+T       E
Sbjct: 1   IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITE 60

Query: 152 TVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVAS 211
            +  E V M + N+FRTL P    N      D EE+EP ++ AWPHLQLVYEF LRF+ S
Sbjct: 61  PIYPEVVHMFAVNMFRTLPPSS--NPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 118

Query: 212 PETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNI 271
           P+    +AK+YIDQ F+L+LL+LFDSEDPRER++LKT LHRIYGKF+  R +IRK INNI
Sbjct: 119 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 178

Query: 272 FYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQL 331
           FYRFI+ETE HNGIAE LEILGSIINGFALPLKEEHK+FL++VL+PLHK KSL++YH QL
Sbjct: 179 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 238

Query: 332 SYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPL 391
           +YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFLNELEE+L+  +  EF + M PL
Sbjct: 239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 298

Query: 392 FQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFP 436
           F+Q+A+C++S HFQVAERAL+ WNN++I +LI  N   ILPI+FP
Sbjct: 299 FRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 343

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 90.32
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 87.7
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 85.89
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 83.76
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 83.55
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 83.28
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-123  Score=953.18  Aligned_cols=342  Identities=61%  Similarity=1.072  Sum_probs=324.2

Q ss_pred             CCCCChHHhHHHHHHHHhcCcccccc-cCCCCCchhHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhcccCCCC
Q 009829           93 LKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIP  171 (524)
Q Consensus        93 l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~NiFR~lPp  171 (524)
                      |+|||++||++||++||++||++||| +||++|+++||+||++|+||+||++++++++||++++++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 009829          172 QPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILH  251 (524)
Q Consensus       172 ~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLH  251 (524)
                      .+++.  ..+||+|||||++||||||||+||++|+||++|+++|++.+|+|||++||.+|+++|+|+||||||+||++||
T Consensus        81 ~~~~~--~~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~  158 (343)
T d2jaka1          81 SSNPT--GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH  158 (343)
T ss_dssp             -----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCcc--ccccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            87553  4689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCchhchHHH
Q 009829          252 RIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQL  331 (524)
Q Consensus       252 rIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL  331 (524)
                      ||||||+++|+|||++|+++|++||||+++||||+|||||+|||||||++|||+||+.||.++|+||||+++++.||+||
T Consensus       159 ~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL  238 (343)
T d2jaka1         159 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL  238 (343)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHH
Q 009829          332 SYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERAL  411 (524)
Q Consensus       332 ~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL  411 (524)
                      +||++||++|||+|+..+++|||||||+||++||||||+||++||+.+++++|+++++|+|++||+|++|+|||||||||
T Consensus       239 ~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl  318 (343)
T d2jaka1         239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL  318 (343)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchHHHHHHHhccccccccchH
Q 009829          412 FLWNNDHIENLIIQNRKVILPIIFP  436 (524)
Q Consensus       412 ~lWnNe~i~~li~~n~~~I~Pii~p  436 (524)
                      ++|+|++|+++|++|+++|+|+|+|
T Consensus       319 ~~w~N~~~~~li~~n~~~i~Pii~P  343 (343)
T d2jaka1         319 YYWNNEYIMSLISDNAAKILPIMFP  343 (343)
T ss_dssp             GGGGCHHHHHHHHHTHHHHTTTSCC
T ss_pred             HHHCCHHHHHHHHhCccceEeeeCC
Confidence            9999999999999999999999997
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure