Citrus Sinensis ID: 009835
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.666 | 0.412 | 0.329 | 3e-28 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.711 | 0.338 | 0.312 | 6e-28 | |
| C0LGE4 | 882 | Probable LRR receptor-lik | no | no | 0.732 | 0.435 | 0.287 | 2e-26 | |
| Q6XAT2 | 967 | LRR receptor-like serine/ | no | no | 0.702 | 0.380 | 0.289 | 2e-26 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.688 | 0.369 | 0.310 | 6e-26 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.685 | 0.371 | 0.294 | 8e-26 | |
| O49545 | 1003 | Leucine-rich repeat recep | no | no | 0.734 | 0.383 | 0.295 | 1e-25 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.719 | 0.367 | 0.304 | 3e-25 | |
| Q9LRT1 | 1016 | Probably inactive leucine | no | no | 0.679 | 0.350 | 0.306 | 6e-25 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.688 | 0.360 | 0.305 | 1e-24 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function desciption |
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Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 189/385 (49%), Gaps = 36/385 (9%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSW-------GKDNDKRDCCKWRGVRCSNKTGHVKVL 88
C D++R+ALL F+ E+ + +SW G N DCC W GV C++K+G V L
Sbjct: 34 CRDDQRDALLEFR----GEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISL 89
Query: 89 NLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS 148
++ + N T + +L KL LRHLDL+N + G +P +G+LS L +NL
Sbjct: 90 DIPNTFLNNYLKT------NSSLFKLQYLRHLDLTNCNLYGE-IPSSLGNLSHLTLVNLY 142
Query: 149 CGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLT-KSSDW 207
+ ++P L+ L +L L N N+ + L +LS L +L+L L K D
Sbjct: 143 FNKFVGEIPASIGNLNQLRHLILAN-NVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPD- 200
Query: 208 FQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 267
+ L+ L+ L L S L PSS+ NLS + L L+ N L V + NL
Sbjct: 201 --SIGDLKQLRNLSLASNNLIGEIPSSLG--NLSNLVH-LVLTHNQL-VGEVPASIGNLI 254
Query: 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNK 327
++ ++ NSL G+IP +F + L L+SN P +L + YN
Sbjct: 255 E-LRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNS 313
Query: 328 LSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKI--LVLGENRLNGTI 385
SG + + + SLE + L+ N TGP+ SS K+ L+LG NRL+G I
Sbjct: 314 FSGPFPKSL------LLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPI 367
Query: 386 DKSLSQLLKLESLSLGRNSFTGKIP 410
+S+S+LL LE L + N+FTG IP
Sbjct: 368 PESISRLLNLEELDISHNNFTGAIP 392
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
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Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 188/409 (45%), Gaps = 36/409 (8%)
Query: 33 VMRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRR 92
++R ++EE LL FK L D G L+SW + + + C W G+ C++ LR
Sbjct: 20 LVRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDS--NPCNWTGIACTH---------LRT 68
Query: 93 SDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTS 152
+ G L GT+SP + KLH LR L++S N G P+P+ + L L+L
Sbjct: 69 VTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISG-PIPQDLSLCRSLEVLDLCTNRF 127
Query: 153 LLKVPRPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSDWFQVV 211
+P + L L+L + LF GS+ + + +LSSL+ L + NLT +
Sbjct: 128 HGVIPIQLTMIITLKKLYLCENYLF--GSIPRQIGNLSSLQELVIYSNNLTGVIP--PSM 183
Query: 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQ 271
AKLR L+ + + PS I S++ L L++N L S P +N+
Sbjct: 184 AKLRQLRIIRAGRNGFSGVIPSEISG---CESLKVLGLAENLLEGS--LPKQLEKLQNLT 238
Query: 272 YLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331
L L N L G IP + + L L L N G IP+ GK+ + RL L N+L+G+
Sbjct: 239 DLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGE 298
Query: 332 LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP-DLGGFSSLKILVLGENRLNGTIDKSLS 390
+ I NL ++ E N +TG +P + G +LK+L L EN L G I + L
Sbjct: 299 IPREIGNLIDAAEIDFSE------NQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELG 352
Query: 391 QLLKLESLSLGRNSFTGKIPLGTQ-------LQSFNASVYAGNPELCGL 432
+L LE L L N G IP Q LQ F+ + P L G
Sbjct: 353 ELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGF 401
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1 | Back alignment and function description |
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Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 211/487 (43%), Gaps = 103/487 (21%)
Query: 40 EREALLTFKQSLVDE-YGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENS 98
ER+ LL FK S+ D+ Y L+SW D D C + G+ C N G V + L
Sbjct: 26 ERDILLQFKGSISDDPYNSLASWVSDGDL--CNSFNGITC-NPQGFVDKIVLWN------ 76
Query: 99 RGTVLKGTISPALLKLHDLRHLDLSNNHFGGS-----------------------PLPEF 135
T L GT++P L L +R L+L N F G+ P+PEF
Sbjct: 77 --TSLAGTLAPGLSNLKFIRVLNLFGNRFTGNLPLDYFKLQTLWTINVSSNALSGPIPEF 134
Query: 136 IGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRH 193
I LS LR+L+LS ++P F++ ++ L ++N+F GS+ + + ++L
Sbjct: 135 ISELSSLRFLDLSKNGFTGEIPVSLFKFCDKTKFVSLAHNNIF--GSIPASIVNCNNLVG 192
Query: 194 LDLSYINLTK----------------------SSDWFQVVAKLRSLKTLVLHSCALPPIN 231
D SY NL S D + + K + L + L S +
Sbjct: 193 FDFSYNNLKGVLPPRICDIPVLEYISVRNNLLSGDVSEEIQKCQRLILVDLGSNLFHGLA 252
Query: 232 P------SSIWHFNL---------------STSIETLDLSDNNLPSSSVYPWLFNLSRNI 270
P +I +FN+ S S+E LD S N L + P +++
Sbjct: 253 PFAVLTFKNITYFNVSWNRFGGEIGEIVDCSESLEFLDASSNEL--TGRIPTGVMGCKSL 310
Query: 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG 330
+ L+L N L GSIP + M SL + L +N ++G IP+ G + L L L L G
Sbjct: 311 KLLDLESNKLNGSIPGSIGKMESLSVIRLGNNSIDGVIPRDIGSLEFLQVLNLHNLNLIG 370
Query: 331 DLSEMIQN----LSGGCTMNSLEG--------------VCLEGNDITGPL-PDLGGFSSL 371
++ E I N L + N LEG + L N + G + P+LG S +
Sbjct: 371 EVPEDISNCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKV 430
Query: 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCG 431
+ L L +N L+G I SL L L ++ N+ +G IP +Q+F +S ++ NP LCG
Sbjct: 431 QFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGSSAFSNNPFLCG 490
Query: 432 LPLPNKC 438
PL C
Sbjct: 491 DPLVTPC 497
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1 | Back alignment and function description |
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Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 189/418 (45%), Gaps = 50/418 (11%)
Query: 15 LSVILFQLEPRIADSNNTVMRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWR 74
L +++F L ++ NN E +AL+ K S + +L W D D C WR
Sbjct: 14 LGMVVFMLLGSVSPMNN--------EGKALMAIKASFSNVANMLLDW-DDVHNHDFCSWR 64
Query: 75 GVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPE 134
GV C N + +V LNL + L G IS AL L +L+ +DL N GG +P+
Sbjct: 65 GVFCDNVSLNVVSLNLSNLN--------LGGEISSALGDLMNLQSIDLQGNKLGGQ-IPD 115
Query: 135 FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRH 193
IG+ L Y++ S +P L L +L+L+N+ L G + L+ + +L+
Sbjct: 116 EIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQL--TGPIPATLTQIPNLKT 173
Query: 194 LDLSYINLTKSSD----WFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS-------- 241
LDL+ LT W +V+ L ++ + + + +W+F++
Sbjct: 174 LDLARNQLTGEIPRLLYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTI 233
Query: 242 -------TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSL 294
TS E LD+S N + + V P+ + + L+L N L G IPE LM +L
Sbjct: 234 PESIGNCTSFEILDVSYNQI--TGVIPYNIGFLQ-VATLSLQGNKLTGRIPEVIGLMQAL 290
Query: 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354
L L+ NEL G IP G + +L L NKL+G + + N M+ L + L
Sbjct: 291 AVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGN------MSRLSYLQLN 344
Query: 355 GNDITGPL-PDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411
N++ G + P+LG L L L N L G I ++S L ++ N +G +PL
Sbjct: 345 DNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPL 402
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Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
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Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 125/403 (31%), Positives = 177/403 (43%), Gaps = 42/403 (10%)
Query: 33 VMRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRR 92
V EE LL K+S D VL W + D C WRGV C N T +V LNL
Sbjct: 19 VATVTSEEGATLLEIKKSFKDVNNVLYDW-TTSPSSDYCVWRGVSCENVTFNVVALNLS- 76
Query: 93 SDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTS 152
D N L G ISPA+ L L +DL N G +P+ IG S L+ L+LS
Sbjct: 77 --DLN-----LDGEISPAIGDLKSLLSIDLRGNRLSGQ-IPDEIGDCSSLQNLDLSFNEL 128
Query: 153 LLKVPRPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSD----W 207
+P L L L L+N+ L +G + LS + +L+ LDL+ L+ W
Sbjct: 129 SGDIPFSISKLKQLEQLILKNNQL--IGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYW 186
Query: 208 FQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS---------------TSIETLDLSDN 252
+V+ L ++ + + + +W+F++ T+ + LDLS N
Sbjct: 187 NEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYN 246
Query: 253 NLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFF 312
L + F + L+L N L G IP LM +L L L+ N L G IP
Sbjct: 247 QLTGEIPFDIGF---LQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPIL 303
Query: 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL-PDLGGFSSL 371
G + +L L NKL+G + + N M+ L + L N +TG + P+LG + L
Sbjct: 304 GNLTFTEKLYLHSNKLTGSIPPELGN------MSKLHYLELNDNHLTGHIPPELGKLTDL 357
Query: 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQ 414
L + N L G I LS L SL++ N F+G IP Q
Sbjct: 358 FDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQ 400
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Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 179/401 (44%), Gaps = 42/401 (10%)
Query: 33 VMRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRR 92
V ++ E +AL+ K S + +L W D D C WRGV C N + V LNL
Sbjct: 22 VASAMNNEGKALMAIKGSFSNLVNMLLDW-DDVHNSDLCSWRGVFCDNVSYSVVSLNLSS 80
Query: 93 SDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTS 152
+ L G ISPA+ L +L+ +DL N G +P+ IG+ + L YL+LS
Sbjct: 81 LN--------LGGEISPAIGDLRNLQSIDLQGNKLAGQ-IPDEIGNCASLVYLDLSENLL 131
Query: 153 LLKVPRPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSD----W 207
+P L L L+L+N+ L G + L+ + +L+ LDL+ +LT W
Sbjct: 132 YGDIPFSISKLKQLETLNLKNNQL--TGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYW 189
Query: 208 FQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS---------------TSIETLDLSDN 252
+V+ L ++ + + + +W+F++ TS + LD+S N
Sbjct: 190 NEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYN 249
Query: 253 NLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFF 312
+ Y F + L+L N L G IPE LM +L L L+ NEL G IP
Sbjct: 250 QITGEIPYNIGF---LQVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPIL 306
Query: 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL-PDLGGFSSL 371
G + +L L N L+G + + N M+ L + L N + G + P+LG L
Sbjct: 307 GNLSFTGKLYLHGNMLTGPIPSELGN------MSRLSYLQLNDNKLVGTIPPELGKLEQL 360
Query: 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412
L L NRL G I ++S L ++ N +G IPL
Sbjct: 361 FELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLA 401
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Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 140/474 (29%), Positives = 197/474 (41%), Gaps = 89/474 (18%)
Query: 32 TVMRCIDEEREALLTFKQSLV----DEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKV 87
T R I E R ALL+ K SL D+ LSSW C W GV C HV
Sbjct: 18 TASRPISEFR-ALLSLKTSLTGAGDDKNSPLSSW---KVSTSFCTWIGVTCDVSRRHVTS 73
Query: 88 LNL----------------RRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGS- 130
L+L R + + ++ G I P + L LRHL+LSNN F GS
Sbjct: 74 LDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSF 133
Query: 131 -----------------------PLPEFIGSLSRLRYLNLS------------------- 148
LP + +L++LR+L+L
Sbjct: 134 PDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIE 193
Query: 149 ----CGTSLL-KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK 203
G L+ K+P L+ L L++ N F G + +LS L D + LT
Sbjct: 194 YLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLT- 252
Query: 204 SSDWFQVVAKLRSLKTLVLHSCALP-PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262
+ + KL+ L TL L P+ W +S++++DLS+N + P
Sbjct: 253 -GEIPPEIGKLQKLDTLFLQVNVFSGPLT----WELGTLSSLKSMDLSNNMF--TGEIPA 305
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322
F +N+ LNL N L G IPE + L L L N G IP+ G+ LN +
Sbjct: 306 SFAELKNLTLLNLFRNKLHGEIPEFIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVD 365
Query: 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRL 381
L NKL+G L + C+ N LE + GN + G +PD LG SL + +GEN L
Sbjct: 366 LSSNKLTGTLPPNM------CSGNKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFL 419
Query: 382 NGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLP 435
NG+I K L L KL + L N +G++P+ + + N +L G PLP
Sbjct: 420 NGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVSVNLGQISLSNNQLSG-PLP 472
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Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 141/463 (30%), Positives = 205/463 (44%), Gaps = 86/463 (18%)
Query: 8 ILEYVALLSVILFQLEPRIAD--SNNTVMRCIDEEREALLTFKQSLVD-EYGVLSSWGKD 64
I+ + L+S +L + +D T+ + +++ALL FK + + VL SW
Sbjct: 6 IVMRLILVSALLVSVSLEHSDMVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSW--- 62
Query: 65 NDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSN 124
ND C W GV+C L RR + G L G +SP + L LR L+L++
Sbjct: 63 NDSLPLCSWTGVKCG--------LKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLAD 114
Query: 125 NHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL-----HLENSNLFSL 179
N F G+ +P +G+L RL+YLN+S +P S L L HLE
Sbjct: 115 NFFHGA-IPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEF 173
Query: 180 GSLQW------------------LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
GSL L +L+SL+ LD Y + ++ + LK ++
Sbjct: 174 GSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEG-----EIPGDIARLKQMI 228
Query: 222 LHSCALPPIN---PSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN 278
AL N P I+ NLS+ I L ++ N+ S ++ P +L N+Q L +G N
Sbjct: 229 FFRIALNKFNGVFPPPIY--NLSSLI-FLSITGNSF-SGTLRPDFGSLLPNLQILYMGIN 284
Query: 279 SLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM----------------------- 315
S G+IPE + SLR L + SN L G IP FG++
Sbjct: 285 SFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDF 344
Query: 316 ------CS-LNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGG 367
CS L L + +NKL G L I NLS L + L GN I+G +P +G
Sbjct: 345 LGALTNCSQLQYLNVGFNKLGGQLPVFIANLS-----TQLTELSLGGNLISGSIPHGIGN 399
Query: 368 FSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
SL+ L LGEN L G + SL +L +L + L N +G+IP
Sbjct: 400 LVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIP 442
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 124/405 (30%), Positives = 191/405 (47%), Gaps = 49/405 (12%)
Query: 37 IDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDE 96
++++ L+ FK L D + L SW +D++ C W V+C+ KT V L+L
Sbjct: 33 LNDDVLGLIVFKSDLNDPFSHLESWTEDDNT--PCSWSYVKCNPKTSRVIELSLD----- 85
Query: 97 NSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLS---RLRYLNLSCGTSL 153
G L G I+ + KL L+ L LSNN+F G+ I +LS L+ L+LS
Sbjct: 86 ---GLALTGKINRGIQKLQRLKVLSLSNNNFTGN-----INALSNNNHLQKLDLSHNNLS 137
Query: 154 LKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 213
++P ++ L +L L ++ S ++ SSLR+L LS+ +L Q+ +
Sbjct: 138 GQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEG-----QIPST 192
Query: 214 LRSLKTLVLHSCALP-------PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 266
L + VL+S L P S IW + LDLS N+L S S+ + +L
Sbjct: 193 L--FRCSVLNSLNLSRNRFSGNPSFVSGIWRL---ERLRALDLSSNSL-SGSIPLGILSL 246
Query: 267 SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326
N++ L L N G++P L L + L+SN G +P+ K+ SLN + N
Sbjct: 247 -HNLKELQLQRNQFSGALPSDIGLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNN 305
Query: 327 KLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP-DLGGFSSLKILVLGENRLNGTI 385
LSGD I +++G L + N++TG LP + SLK L L EN+L+G +
Sbjct: 306 LLSGDFPPWIGDMTG------LVHLDFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEV 359
Query: 386 DKSLSQLLKLESLSLGRNSFTGKIP-----LGTQLQSFNASVYAG 425
+SL +L + L N F+G IP LG Q F+ + G
Sbjct: 360 PESLESCKELMIVQLKGNDFSGNIPDGFFDLGLQEMDFSGNGLTG 404
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 137/449 (30%), Positives = 195/449 (43%), Gaps = 88/449 (19%)
Query: 32 TVMRCIDEEREALLTFKQSL-VDEYG-VLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLN 89
TV + I E ALL+ K S +DE+ +L+SW N C W GV C HV L+
Sbjct: 20 TVAKPI-TELHALLSLKSSFTIDEHSPLLTSW---NLSTTFCSWTGVTCDVSLRHVTSLD 75
Query: 90 LRRSDDENSRGTV-------------------LKGTISPALLKLHDLRHLDLSNNHFGGS 130
L N GT+ + G I P + L++LRHL+LSNN F GS
Sbjct: 76 L---SGLNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGS 132
Query: 131 PLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFS------LGS--- 181
E L LR L+L +P L+ L +LHL N FS G+
Sbjct: 133 FPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHL-GGNYFSGKIPATYGTWPV 191
Query: 182 LQWLS---------------HLSSLRHLDLSYINLTKSSDWFQV---------------- 210
L++L+ +L++LR L + Y N ++ ++
Sbjct: 192 LEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGL 251
Query: 211 -------VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWL 263
+ KL+ L TL L A + L +S++++DLS+N + P
Sbjct: 252 TGEIPPEIGKLQKLDTLFLQVNAF---TGTITQELGLISSLKSMDLSNNMF--TGEIPTS 306
Query: 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323
F+ +N+ LNL N L G+IPE M L L L N G IP+ G+ L L L
Sbjct: 307 FSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDL 366
Query: 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLN 382
NKL+G L + C+ N L + GN + G +PD LG SL + +GEN LN
Sbjct: 367 SSNKLTGTLPPNM------CSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLN 420
Query: 383 GTIDKSLSQLLKLESLSLGRNSFTGKIPL 411
G+I K L L KL + L N TG++P+
Sbjct: 421 GSIPKELFGLPKLSQVELQDNYLTGELPI 449
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | ||||||
| 225464712 | 1021 | PREDICTED: receptor-like protein 12-like | 0.709 | 0.364 | 0.446 | 1e-79 | |
| 224105895 | 963 | predicted protein [Populus trichocarpa] | 0.761 | 0.414 | 0.460 | 1e-78 | |
| 302143724 | 546 | unnamed protein product [Vitis vinifera] | 0.847 | 0.813 | 0.388 | 7e-78 | |
| 359490572 | 975 | PREDICTED: probable LRR receptor-like se | 0.704 | 0.378 | 0.429 | 5e-75 | |
| 224125666 | 938 | predicted protein [Populus trichocarpa] | 0.757 | 0.423 | 0.459 | 7e-75 | |
| 224116866 | 994 | predicted protein [Populus trichocarpa] | 0.698 | 0.368 | 0.451 | 1e-69 | |
| 224105891 | 1036 | predicted protein [Populus trichocarpa] | 0.698 | 0.353 | 0.451 | 2e-69 | |
| 225466147 | 1024 | PREDICTED: LRR receptor-like serine/thre | 0.702 | 0.359 | 0.466 | 8e-69 | |
| 147807651 | 971 | hypothetical protein VITISV_018647 [Viti | 0.715 | 0.386 | 0.402 | 2e-66 | |
| 255570346 | 831 | serine-threonine protein kinase, plant-t | 0.650 | 0.410 | 0.442 | 3e-66 |
| >gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 246/423 (58%), Gaps = 51/423 (12%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRR-SD 94
C+++ER+ALL FKQ LVD++G+LSSWG + D+RDCCKWRGV+CSN+T HV +L+L
Sbjct: 52 CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGVQCSNRTSHVIMLDLHALPT 111
Query: 95 DENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLL 154
D + L+G IS +LL+L L HLDLS N F GS +PEFIG S+LRYLNLS
Sbjct: 112 DTVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEFIGLFSKLRYLNLSEARLAG 171
Query: 155 KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL 214
+P LS L +L L + S +L+WLS LSSLRHLDLS +NL K+ W V+ +L
Sbjct: 172 MIPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLDLSGLNLDKAIYWEHVINRL 231
Query: 215 RSLKTLVLHSCALPP-INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYL 273
SL L+LH ALP I PS++ + N S S+ LDLS N L SSSVYPWLFNLS ++ +L
Sbjct: 232 PSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFL-SSSVYPWLFNLSSSLVHL 290
Query: 274 NLGFNSLQGSIPEAFQLMVSLRFL------------------------------------ 297
+L N +QG IP+ F MVSL +L
Sbjct: 291 DLSINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHLDLSVNHLHGSIPD 350
Query: 298 ---YLTS--------NELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346
++TS N+LEGGIPK F +CSL + L N L+ L E +QN S C+ +
Sbjct: 351 TFGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNSLTAQLPEFVQN-SLSCSKD 409
Query: 347 SLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
+LE + L N TG P+ GFS L L + NRLNGT + + QL +LE L + NS
Sbjct: 410 TLEVLVLSWNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPEHIGQLSQLEVLEISGNSLH 469
Query: 407 GKI 409
G I
Sbjct: 470 GNI 472
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 186/404 (46%), Positives = 254/404 (62%), Gaps = 5/404 (1%)
Query: 11 YVALLSVILFQLE--PRIADSNNTVMRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKR 68
YV ++ ++L + I + + CI+ ER+ALL FK+ ++DE GVLSSWG + +KR
Sbjct: 5 YVLIIVLVLLHIPFPGFITGATGGEIGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKR 64
Query: 69 DCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFG 128
DCCKWRGV C N TGHV LNL S T L G +S +LL+L L +LDLS N+
Sbjct: 65 DCCKWRGVGCDNITGHVTSLNLHSSPLYEHHFTPLTGKVSNSLLELQHLNYLDLSLNNLD 124
Query: 129 GSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHL 188
S + +FIGSLS LRYLNLS + +P + LS L L L S S+ +L WLSHL
Sbjct: 125 ESIM-DFIGSLSSLRYLNLSYNLFTVTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHL 183
Query: 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLD 248
SSL HLDLS +L+K +DW QVV L LK L L+ C+L I PS + N S + L
Sbjct: 184 SSLEHLDLSGSDLSKVNDWLQVVTNLPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLH 243
Query: 249 LSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGI 308
LS+NNL SS++YPWL+NLS ++ L+L N LQG +P+ F+ M +L L L+ N+LEGGI
Sbjct: 244 LSNNNL-SSAIYPWLYNLSNSLADLDLSGNQLQGLVPDGFRKMSALTNLVLSRNQLEGGI 302
Query: 309 PKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF 368
P+ G+MCSL+ L L +N L+G+LS++ +NL G T +SLE + L N + G L D+ F
Sbjct: 303 PRSLGEMCSLHTLDLCHNNLTGELSDLTRNLYGR-TESSLEILRLCQNQLRGSLTDIARF 361
Query: 369 SSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412
SSL+ L + N+LNG+I +S+ L KL+ + NS G + G
Sbjct: 362 SSLRELDISNNQLNGSIPESIGFLSKLDYFDVSFNSLQGLVSGG 405
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143724|emb|CBI22585.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 217/559 (38%), Positives = 278/559 (49%), Gaps = 115/559 (20%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 95
C + ER+ALL FKQ LV +Y VLSSWG + DKRDCCKWRGV C+N+TGHV L+L +D
Sbjct: 9 CTERERQALLHFKQGLVHDYRVLSSWGNEEDKRDCCKWRGVECNNQTGHVISLDLHGTDF 68
Query: 96 ENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK 155
G G I P+L +L L+HL+LS N F G LP +G+LS L+ L+L+ +
Sbjct: 69 VRYLG----GKIDPSLAELQHLKHLNLSFNRFEGV-LPTQLGNLSNLQSLDLAYNLGM-- 121
Query: 156 VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215
+ G+L WLS L L HLDLS ++L+K+ W Q + K+
Sbjct: 122 ----------------------TCGNLDWLSRLPLLTHLDLSGVDLSKAIHWPQAINKMP 159
Query: 216 SLKTLVLHSCALPPINPSS-IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274
SL L L LP I P+ I H N STS+ LDLS N L +SS+YPWLFN S ++ +L+
Sbjct: 160 SLTELYLSHTQLPWIIPTIFISHTNSSTSLAVLDLSRNGL-TSSIYPWLFNFSSSLLHLD 218
Query: 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKF----------------------F 312
L +N L GS P+AF MV L L+ NELEG IPKF F
Sbjct: 219 LSYNHLNGSFPDAFTNMVFLESFVLSRNELEGEIPKFFSVSFVHLDLSGNQLHGLIPDAF 278
Query: 313 GKMCSLNRLCLPYNKLSGDLSEMIQ----------NLSGGC------TMNSLEGVCLEGN 356
G M L L L N+L G++ + + NL G M +L + L N
Sbjct: 279 GNMTILAYLDLSSNQLKGEIPKSLSTSVVHLDLSWNLLHGSIPDAFGNMTTLAYLDLSSN 338
Query: 357 DITGPLPD-----------------------LGGFSSLKILVLGENRLNGTIDKSLSQLL 393
+ G +P G ++L L L N+L G I KSLS
Sbjct: 339 HLEGEIPKSLSTSFVHLDLSWNQLHGSILDAFGNMTTLAYLDLSSNQLEGEIPKSLST-- 396
Query: 394 KLESLSLGRNSFTGKIP-------------------LGTQLQSFNASVYAGNPELCGLPL 434
L L N G IP GTQLQSF+AS Y GNP LCG PL
Sbjct: 397 SFVHLGLSYNHLQGSIPDAFGNMTALAYLHLSWNQLEGTQLQSFSASTYQGNPRLCGPPL 456
Query: 435 PNKCPDEESTPLPGRNDGANTLEDEDDQFMTLGFYVGLILGFFVGFWGVCGTLMLNRSWR 494
KC +E T D +N +DD + F ++LGF +GFWGVCGTL+LN SWR
Sbjct: 457 LKKCLGDE-TKEASFIDPSNRDNIQDDA-NKIWFSGSIVLGFIIGFWGVCGTLLLNSSWR 514
Query: 495 HGYYNFLTGMKDWLYVTAA 513
H Y+ FL +KD LY+T
Sbjct: 515 HAYFQFLNKIKDRLYMTTT 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 180/419 (42%), Positives = 249/419 (59%), Gaps = 50/419 (11%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 95
CI+ ER+ALL FK+ + D++G+LSSW + +KRDCCKWRGV+CS++TGH+ L+L +
Sbjct: 36 CIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHITSLDLSAYEY 95
Query: 96 ENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK 155
++ L+G ISP+LL+L L HLDLS N F G +PEFIGSL+++RYL+LS ++ L
Sbjct: 96 KD-EFRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLDLS--STYLA 152
Query: 156 VPRPFQY--LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 213
P P Q LS L +L L ++ S +L WLS LSSL HL L+++NL+K+ W + K
Sbjct: 153 GPLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIRWADAINK 212
Query: 214 LRSLKTLVLHSCALP-PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQY 272
L SL L+L SC LP PI P S+ S S+ LDLS N L S+S+YPWLFN + ++ +
Sbjct: 213 LPSLIDLLLKSCDLPSPITP-SLSLVTSSMSLAVLDLSCNQL-STSIYPWLFNFNSSLVH 270
Query: 273 LNLGFNSLQGSIPEAFQLMVSLR----------------------FLYLTSNELEGGIPK 310
L+L +N LQ S P+AF MVSL FL L++N+L+G IP
Sbjct: 271 LDLSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSSSLVFLDLSNNQLQGSIPD 330
Query: 311 FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG--------------------GCTMNSLEG 350
FG M SL + L N+L G++ + NL C ++LE
Sbjct: 331 TFGNMTSLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRNNLAGVLVKNLLACANDTLEI 390
Query: 351 VCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKI 409
+ L N G LPDL GFSSL L LG N+LNGT+ +S++QL +LE L + NS G +
Sbjct: 391 LDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLELLKIPSNSLQGTV 449
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 188/409 (45%), Positives = 246/409 (60%), Gaps = 12/409 (2%)
Query: 12 VALLSVILFQLEPR-IADSNNTVMRCIDEEREALLTFKQSLVDEYGVLSSWG-KDNDKRD 69
VA L QL PR I+ + RCI+ ER+ALL+FKQ L G+LSSWG ++ +K D
Sbjct: 9 VASTKEKLHQLRPRFISAAERAEFRCIERERQALLSFKQELEYPSGLLSSWGSEEGEKSD 68
Query: 70 CCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGG 129
CCKW GV C+N+TG + +L+L G + G I+ +LL+L L +LDLS+N F G
Sbjct: 69 CCKWVGVGCNNRTGRITMLDLH--------GLAVGGNITDSLLELQHLNYLDLSDNSFYG 120
Query: 130 SPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189
+P P F+GSL +LRYL+LS + ++ LS L L L + S SL WLS LS
Sbjct: 121 NPFPSFVGSLRKLRYLSLSNNGLIGRLSYQLGNLSSLQSLDLSYNFDVSFESLDWLSRLS 180
Query: 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDL 249
L HL L+ +LT++SDW QVV KL LK L L C+L I P ++ N S S+ LDL
Sbjct: 181 FLEHLHLTGNHLTQASDWIQVVNKLPRLKDLQLSDCSLLSIVPPALSFVNSSRSLAILDL 240
Query: 250 SDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP 309
S N+L SSS+ PWL N S ++ L+L N LQGSIP+AF M SL L+L N+LEGGIP
Sbjct: 241 SFNHL-SSSIVPWLSNSSDSLVDLDLSANQLQGSIPDAFGKMTSLTNLHLADNQLEGGIP 299
Query: 310 KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFS 369
+ FG MCSL L L N LSG L I+N+ GC NSL+ + L N + G LPD FS
Sbjct: 300 RSFGGMCSLRELDLSPNNLSGPLPRSIRNMH-GCVENSLKSLQLRDNQLHGSLPDFTRFS 358
Query: 370 SLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSF 418
S+ L + N+LNG++ K Q +L SL+L N TG +P T L S
Sbjct: 359 SVTELDISHNKLNGSLPKRFRQRSELVSLNLSDNQLTGSLPDVTMLSSL 407
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 169/374 (45%), Positives = 238/374 (63%), Gaps = 8/374 (2%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 95
CI+ ER+ALL FK+ L+D++G+LS+WG + +KRDCCKWRGV CSN+TGHV L+L R ++
Sbjct: 40 CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHR-EN 98
Query: 96 ENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK 155
N L G IS +LL+L L +L+L+ + FGGS P FIGSL +LRYL+LS
Sbjct: 99 YNGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGT 158
Query: 156 VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215
+ F LS L YL L + SL +LS+ SL+HLDL +L+++ DW QV+ +L
Sbjct: 159 LSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLP 218
Query: 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275
L L+L SC+L I S+ N S S+ +D S N+L SSS++ WL N ++ L+L
Sbjct: 219 RLHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDL-SSSIFHWLANFGNSLIDLDL 277
Query: 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEM 335
N+LQGSIP+ F M SLR L L+SN+L+G + FG+MCSLN+LC+ N L G+LS++
Sbjct: 278 SHNNLQGSIPDVFTNMTSLRTLDLSSNQLQGDLSS-FGQMCSLNKLCISENNLIGELSQL 336
Query: 336 IQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKL 395
GC NSLE + L+ N + G LPD+ F+S++ L L N+LNG++ + SQ +L
Sbjct: 337 F-----GCVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSEL 391
Query: 396 ESLSLGRNSFTGKI 409
L L N TG +
Sbjct: 392 VLLYLNDNQLTGSL 405
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105891|ref|XP_002333752.1| predicted protein [Populus trichocarpa] gi|222838400|gb|EEE76765.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 169/374 (45%), Positives = 238/374 (63%), Gaps = 8/374 (2%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 95
CI+ ER+ALL FK+ L+D++G+LS+WG + +KRDCCKWRGV CSN+TGHV L+L R ++
Sbjct: 40 CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHR-EN 98
Query: 96 ENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK 155
N L G IS +LL+L L +L+L+ + FGGS P FIGSL +LRYL+LS
Sbjct: 99 YNGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGT 158
Query: 156 VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215
+ F LS L YL L + SL +LS+ SL+HLDL +L+++ DW QV+ +L
Sbjct: 159 LSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLP 218
Query: 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275
L L+L SC+L I S+ N S S+ +D S N+L SSS++ WL N ++ L+L
Sbjct: 219 RLHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDL-SSSIFHWLANFGNSLIDLDL 277
Query: 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEM 335
N+LQGSIP+ F M SLR L L+SN+L+G + FG+MCSLN+LC+ N L G+LS++
Sbjct: 278 SHNNLQGSIPDVFTNMTSLRTLDLSSNQLQGDLSS-FGQMCSLNKLCISENNLIGELSQL 336
Query: 336 IQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKL 395
GC NSLE + L+ N + G LPD+ F+S++ L L N+LNG++ + SQ +L
Sbjct: 337 F-----GCVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSEL 391
Query: 396 ESLSLGRNSFTGKI 409
L L N TG +
Sbjct: 392 VLLYLNDNQLTGSL 405
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 180/386 (46%), Positives = 238/386 (61%), Gaps = 18/386 (4%)
Query: 33 VMRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRR 92
V CI+ ER+ALL F++ LVD YG+LSSWG DN RDCC+WRGV+CSN++GH+ +L+L
Sbjct: 27 VTGCIERERQALLHFRRGLVDRYGLLSSWGDDN--RDCCQWRGVQCSNQSGHIIMLHLPA 84
Query: 93 SDDENSRGTV----LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS 148
+E+ V L+G ISP+LL+L L HLDLS N F G +P F+GSLSR++YLNLS
Sbjct: 85 PPNEDYSQDVIYQSLRGEISPSLLELDHLTHLDLSYNDFEGRHIPPFLGSLSRMQYLNLS 144
Query: 149 CGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWF 208
VP LS L+ L L ++ L + G+L+WLS LSSLRHLDLS +NL+++ W
Sbjct: 145 HANFAQTVPTQLGNLSNLLSLDLSDNYLLNSGNLEWLSRLSSLRHLDLSSVNLSEAIHWS 204
Query: 209 QVVAKLRSLKTLVLHSC---ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265
Q + KL SL L L C +PP+ S+ H N S + LDLS N L +SS+YPWL N
Sbjct: 205 QAINKLPSLIHLDLQHCYLPPIPPLTIPSLSHGNSSVPLVFLDLSGNYL-TSSIYPWLLN 263
Query: 266 LSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324
S + +L+L FN L GSIPE AF M SL +L L S+EL+ IP G M SL L +
Sbjct: 264 FSTTLLHLDLSFNGLNGSIPEYAFGNMSSLEYLDLHSSELDDEIPDTIGDMGSLAYLDIS 323
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNG 383
N+L G + + + M L + L N + G +PD +G SLK L L EN L G
Sbjct: 324 ENQLWGSIPDTVG------KMVLLSHLDLSLNQLQGSIPDTVGNMVSLKKLSLSENHLQG 377
Query: 384 TIDKSLSQLLKLESLSLGRNSFTGKI 409
I KSLS L L+ L L RN+ +G++
Sbjct: 378 EIPKSLSNLCNLQELELDRNNLSGQL 403
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147807651|emb|CAN64389.1| hypothetical protein VITISV_018647 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 181/450 (40%), Positives = 242/450 (53%), Gaps = 75/450 (16%)
Query: 7 PILEYVALLSVIL-FQLEPRIADSNNTVMRCIDEEREALLTFKQSLVDEYGVLSSWGKDN 65
P +++L ++L F+ R+ D+ + CI+ ER+ALL FKQ +VD+YG+LSSWG
Sbjct: 5 PFRYFISLFLLLLCFEACLRVGDAK---VGCIERERQALLHFKQGVVDDYGMLSSWGNGE 61
Query: 66 DKRDCCKWRGVRCSNKTGHVKVLNLRRSDDEN-SRGTVLKGTISPALLKLHDLRHLDLSN 124
DKRDCCKWRGV C+N+TGHV +L+L L G I P+L +L L+HL+LS
Sbjct: 62 DKRDCCKWRGVECNNQTGHVIMLDLHTPPPVGIGYFQSLGGKIGPSLAELQHLKHLNLSW 121
Query: 125 NHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQW 184
N F G LP +G+LS L+ L+L N S G+L W
Sbjct: 122 NQFEG-ILPTQLGNLSNLQSLDLG-----------------------HNYGDMSCGNLDW 157
Query: 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPS-SIWHFNLSTS 243
LS L L HLDLS +NL+K+ W Q + K+ SL L L LPPI P+ SI H N STS
Sbjct: 158 LSDLPLLTHLDLSGVNLSKAIHWPQAINKMPSLTELYLSDTQLPPIIPTISISHINSSTS 217
Query: 244 IETLDLSDNNLPSSSVYPWLF---------NLSRN---------------IQYLNLGFNS 279
+ LDLS N L +SS+YPWLF +L N + YL+L N
Sbjct: 218 LAVLDLSRNGL-TSSIYPWLFCFNSVLVHLDLCMNDLNCSILDAFGNMTTLAYLDLSLNE 276
Query: 280 LQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMI--- 336
L+GSIP+AF M +L L L SN L G IP FG M SL L L N+L G++ + +
Sbjct: 277 LRGSIPDAFGNMTTLAHLDLHSNHLNGSIPDAFGNMTSLAYLDLSSNQLEGEIPKSLTDL 336
Query: 337 ----------QNLSG-------GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGEN 379
NL+G C+ ++LE + L N G PDL GFS L+ L LG N
Sbjct: 337 CNLQELWLSRNNLTGLKEKDFLACSNHTLEVLGLSYNQFKGSFPDLSGFSQLRELSLGFN 396
Query: 380 RLNGTIDKSLSQLLKLESLSLGRNSFTGKI 409
+LNGT+ +S+ QL +L+ LS+ NS G +
Sbjct: 397 QLNGTLPESIGQLAQLQVLSIPSNSLRGTV 426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570346|ref|XP_002526132.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223534509|gb|EEF36208.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 166/375 (44%), Positives = 218/375 (58%), Gaps = 34/375 (9%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 95
CI+ ER AL K L+D YG LSSW + DKRDCCKW G+ CSN TGH+ +L+L +
Sbjct: 39 CIERERHALFRIKDELIDNYGRLSSWRSEEDKRDCCKWAGITCSNLTGHITMLDLHVKMN 98
Query: 96 ENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK 155
+S L+G +S LL+L L +LDLS N FGGS P GSL++L+YL
Sbjct: 99 VSSYKP-LRGNMSDFLLELIHLTYLDLSQNDFGGSRFPNNNGSLAKLQYL---------- 147
Query: 156 VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215
L N+N S S +R+L L + +DW Q+V +L
Sbjct: 148 --------------FLFNANFTGTIS-------SIVRNLSNLGTPLVRPNDWLQIVNRLP 186
Query: 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275
L+ L L SC P S+ N S+++ LDLS NN S+ PWL N+++NI++L+L
Sbjct: 187 QLENLTLSSCFSGNEIPLSLSPVNSSSALTVLDLSRNNFVIPSIIPWLSNVTQNIKHLDL 246
Query: 276 GFNSL-QGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSE 334
FNS + S +A M+SL+ L+L++ L GG+P+ FG M LN L L N L+ LS+
Sbjct: 247 SFNSFSESSTLDAIGNMISLQGLHLSNTSLVGGLPRSFGNMSQLNYLDLSRNNLNVQLSK 306
Query: 335 MIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLK 394
+IQNLSG CT SLE + L N ITG LPDL GFSSL+ L LG NRLNGTIDK + QL +
Sbjct: 307 LIQNLSG-CTEKSLEHLALHENKITGSLPDLSGFSSLRHLYLGNNRLNGTIDKRIGQLYE 365
Query: 395 LESLSLGRNSFTGKI 409
LE L+LG NS G I
Sbjct: 366 LERLNLGWNSLNGVI 380
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | ||||||
| TAIR|locus:2044767 | 905 | AT2G34930 "AT2G34930" [Arabido | 0.698 | 0.404 | 0.301 | 3.1e-32 | |
| TAIR|locus:2043540 | 960 | AT2G25790 [Arabidopsis thalian | 0.272 | 0.148 | 0.364 | 1.9e-23 | |
| TAIR|locus:2091260 | 372 | DRT100 "DNA-DAMAGE REPAIR/TOLE | 0.370 | 0.521 | 0.298 | 2.5e-23 | |
| TAIR|locus:2182260 | 371 | AT5G12940 [Arabidopsis thalian | 0.295 | 0.417 | 0.355 | 3.3e-23 | |
| TAIR|locus:2005629 | 1140 | AT1G75640 [Arabidopsis thalian | 0.332 | 0.152 | 0.337 | 2e-22 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.515 | 0.288 | 0.245 | 4e-14 | |
| TAIR|locus:2005507 | 976 | ER "ERECTA" [Arabidopsis thali | 0.337 | 0.181 | 0.286 | 2e-21 | |
| TAIR|locus:2066306 | 480 | AT2G26380 [Arabidopsis thalian | 0.269 | 0.293 | 0.331 | 1.2e-19 | |
| TAIR|locus:2144392 | 957 | RLP53 "receptor like protein 5 | 0.631 | 0.345 | 0.283 | 2.5e-19 | |
| TAIR|locus:2139885 | 1013 | AT4G28650 [Arabidopsis thalian | 0.272 | 0.141 | 0.324 | 2.8e-19 |
| TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 118/391 (30%), Positives = 173/391 (44%)
Query: 35 RCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSD 94
+CI ER+ALLTF+ +L D L SW DCC W GV C +T HV ++LR
Sbjct: 32 KCISTERQALLTFRAALTDLSSRLFSWSGP----DCCNWPGVLCDARTSHVVKIDLRNPS 87
Query: 95 -----DENSRGTVLKGTISPAXXXXXXXXXXXXSNNHFGGSPLPEFIGSLSRLRYLNLSC 149
DE RG+ L+G I P+ S+N F +PEFIG + LRYLNLS
Sbjct: 88 QDVRSDEYKRGS-LRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSS 146
Query: 150 GTSLLKVPRPFQYLSGLVYLHL--ENS------NLFXXXXXXXXXXXXXXXXXXXXYINL 201
+ ++P LS L L L E+ +L Y+NL
Sbjct: 147 SSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNL 206
Query: 202 TKSSD-WFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETXXXXXXXXXXXXVY 260
+ + + W Q +++ +LK L L + L + P+ +L +E +
Sbjct: 207 SGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKL-LEVLDLSENSLNSP-IP 264
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN-ELEGGIPKFFGKMCSLN 319
WLF L+ N++ L L ++ LQGSIP F+ + L L L++N L+G IP G + L
Sbjct: 265 NWLFGLT-NLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLK 323
Query: 320 RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGE 378
L L N+L+G + + S NSL + L N + G LP+ LG +L+ L L
Sbjct: 324 FLDLSANELNGQIHGFLDAFSRN-KGNSLVFLDLSSNKLAGTLPESLGSLRNLQTLDLSS 382
Query: 379 NRLNGTIDKXXXXXXXXXXXXXGRNSFTGKI 409
N G++ N+ G I
Sbjct: 383 NSFTGSVPSSIGNMASLKKLDLSNNAMNGTI 413
|
|
| TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 55/151 (36%), Positives = 81/151 (53%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N++ L+LG N L G +P + L FL L SN+L GG+P GKM +L + L YN L
Sbjct: 170 NLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNL 229
Query: 329 SGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP-DLGGFSSLKILVLGENRLNGTIDK 387
SG++ I LS ++N L+ L N+++GP+P LG L+ + L +N+L+G I
Sbjct: 230 SGEIPYQIGGLS---SLNHLD---LVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPP 283
Query: 388 XXXXXXXXXXXXXGRNSFTGKIP-LGTQLQS 417
NS +G+IP L Q+QS
Sbjct: 284 SIFSLQNLISLDFSDNSLSGEIPELVAQMQS 314
|
|
| TAIR|locus:2091260 DRT100 "DNA-DAMAGE REPAIR/TOLERATION 100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 60/201 (29%), Positives = 87/201 (43%)
Query: 239 NLSTSIETXXXXXXXXXXXXVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
+L++ IE V P F + + + LG N L GSIPE+ M L L
Sbjct: 178 SLTSLIELKHLELTENGITGVIPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLD 237
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI 358
L+ N +EG IP++ G M L+ L L N L+G + + + SG L+ L N +
Sbjct: 238 LSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSG------LDVANLSRNAL 291
Query: 359 TGPLPDLGGFSSLKI-LVLGENRLNGTIDKXXXXXXXXXXXXXGRNSFTGKIPLGTQLQS 417
G +PD+ G + + L L N L+G I N G+IP G
Sbjct: 292 EGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDH 351
Query: 418 FNASVYAGNPELCGLPLPNKC 438
A+ ++ N LCG PL C
Sbjct: 352 LEATSFSDNQCLCGGPLTTSC 372
|
|
| TAIR|locus:2182260 AT5G12940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 58/163 (35%), Positives = 75/163 (46%)
Query: 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSE 334
L N + G IP++ + L L L+ N L G IP FGKM L L L N +SG
Sbjct: 213 LSGNKISGQIPDSLTRIYRLADLELSMNRLTGPIPASFGKMSVLATLNLDGNLISG---- 268
Query: 335 MIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKXXXXXX 393
MI G +S+ + L GN ITG +P+ G S +L L NRL G I
Sbjct: 269 MIP---GSLLASSISNLNLSGNLITGSIPNTFGPRSYFTVLDLANNRLQGPIPASITAAS 325
Query: 394 XXXXXXXGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPN 436
N GKIP+G+ +A+ +A N LCG PL N
Sbjct: 326 FIGHLDVSHNHLCGKIPMGSPFDHLDATSFAYNACLCGKPLGN 368
|
|
| TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 61/181 (33%), Positives = 89/181 (49%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P + +++Q L+L N + G+IP SL L L SN L+G IP + K+ L +
Sbjct: 571 PKNYGFLKSLQVLSLSHNRISGTIPPEIGNCSSLEVLELGSNSLKGHIPVYVSKLSLLKK 630
Query: 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGEN 379
L L +N L+G + + I S SLE + L N ++G +P+ L ++L L L N
Sbjct: 631 LDLSHNSLTGSIPDQISKDS------SLESLLLNSNSLSGRIPESLSRLTNLTALDLSSN 684
Query: 380 RLNGTIDKXXXXXXXXXXXXXGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPNKCP 439
RLN TI RNS G+IP + N +V+ NP LCG PL +CP
Sbjct: 685 RLNSTIPSSLSRLRFLNYFNLSRNSLEGEIPEALAARFTNPTVFVKNPGLCGKPLGIECP 744
Query: 440 D 440
+
Sbjct: 745 N 745
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 148 (57.2 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 71/289 (24%), Positives = 111/289 (38%)
Query: 125 NHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFXXXXXX- 183
NHF G +P +GSL +LR L+LS +P F L L YL L ++N
Sbjct: 256 NHFVGQ-IPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNP 314
Query: 184 XXXXXXXXXXXXXXYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243
+ +L K + KLR + L S L P+ W +
Sbjct: 315 LTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVD---LSSNNLSGNIPT--WLLTNNPE 369
Query: 244 IETXXXXXXXXXXXXVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-LMVSLRFLYLTSN 302
+E ++P + + N+Q + N++ G P+ + +L L ++N
Sbjct: 370 LEVLQLQNNSFT---IFP-IPTMVHNLQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNN 424
Query: 303 ELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGP- 361
+G P G+M +++ L L YN SG L ++ GC S+ + L N +G
Sbjct: 425 GFQGYFPTSIGEMKNISFLDLSYNNFSGKLP---RSFVTGCV--SIMFLKLSHNKFSGRF 479
Query: 362 LPDLGGFSSLKILVLGENRLNGTIDKXXXXXXXXXXXXXGRNSFTGKIP 410
LP F SL +L + N G I N +G IP
Sbjct: 480 LPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIP 528
|
|
| TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 53/185 (28%), Positives = 83/185 (44%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P F ++ YLNL N+++G IP + +L L L++N++ G IP G + L +
Sbjct: 396 PRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLK 455
Query: 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGEN 379
+ L N ++G + NL S+ + L NDI+GP+P+ L ++ +L L N
Sbjct: 456 MNLSRNHITGVVPGDFGNL------RSIMEIDLSNNDISGPIPEELNQLQNIILLRLENN 509
Query: 380 RLNGTIDKXXXXXXXXXXXXXGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPNKCP 439
L G + N+ G IP F+ + GNP LCG L + C
Sbjct: 510 NLTGNVGSLANCLSLTVLNVS-HNNLVGDIPKNNNFSRFSPDSFIGNPGLCGSWLNSPCH 568
Query: 440 DEEST 444
D T
Sbjct: 569 DSRRT 573
|
|
| TAIR|locus:2066306 AT2G26380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 49/148 (33%), Positives = 68/148 (45%)
Query: 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324
NL+R + YLNLG N L G+IP + + L L N L G IP F M +L L L
Sbjct: 174 NLTR-LNYLNLGGNLLTGTIPLGIANLKLISNLNLDGNRLSGTIPDIFKSMTNLRILTLS 232
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNG 383
N+ SG L I +L+ + LE L N+++G +P L F +L L L +NR +G
Sbjct: 233 RNRFSGKLPPSIASLAP--VLAFLE---LGQNNLSGSIPSYLSRFVALDTLDLSKNRFSG 287
Query: 384 TIDKXXXXXXXXXXXXXGRNSFTGKIPL 411
+ K N T P+
Sbjct: 288 AVPKSLAKLTKIANINLSHNLLTNPFPV 315
|
|
| TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 109/385 (28%), Positives = 149/385 (38%)
Query: 36 CIDEEREALLTFKQSLV------DE---YGVLS-----SWGKDNDKRDCCKWRGVRCSNK 81
C E+R+ALL FK D YG+ S SWG ++D CC W GV C+ K
Sbjct: 37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSD---CCNWEGVTCNAK 93
Query: 82 TGHVKVLNLRRSDDENSRGTVLKGTISPAXXXXXXXXXXXXSNNHFGGSPLPEFIGSLSR 141
+G V L+L S + G + + S N F G + I +LS
Sbjct: 94 SGEVIELDLSCS---SLHGRFHSNS---SIRNLHFLTTLDLSFNDFKGQ-ITSSIENLSH 146
Query: 142 LRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFXXXXXXXXXXXXXXXXXXXXYINL 201
L YL+LS ++ LS L YL+L + N F Y
Sbjct: 147 LTYLDLSSNHFSGQILNSIGNLSRLTYLNLFD-NQFSGQAPSSICNLSHLTFLDLSYNRF 205
Query: 202 TKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETXXXXXXXXXXXXVYP 261
+ + L L TL L S PSSI NLS T +
Sbjct: 206 F--GQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIG--NLSNL--TTLDLSNNNFSGQIPS 259
Query: 262 WLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
++ NLS+ + +L L N+ G IP +F + L LY+ N+L G P + L+ L
Sbjct: 260 FIGNLSQ-LTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLL 318
Query: 322 CLPYNKLSGDLSEMIQNLSG------------GC------TMNSLEGVCLEGNDITGPLP 363
L NK +G L I +LS G T+ SL + L GN + G L
Sbjct: 319 SLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTL- 377
Query: 364 DLGGFSS---LKILVLGENRLNGTI 385
+ G SS L L +G N G I
Sbjct: 378 EFGNISSPSNLYELDIGNNNFIGPI 402
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| TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 49/151 (32%), Positives = 79/151 (52%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
+++ L+L N QGS+P +F+ + LRFL L+ N L G +P G++ SL L YN+
Sbjct: 165 SLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLETAILGYNEF 224
Query: 329 SGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP-DLGGFSSLKILVLGENRLNGTIDK 387
G + N+ NSL+ + L ++G +P +LG SL+ L+L EN GTI +
Sbjct: 225 KGPIPPEFGNI------NSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTIPR 278
Query: 388 XXXXXXXXXXXXXGRNSFTGKIPLG-TQLQS 417
N+ TG+IP+ T+L++
Sbjct: 279 EIGSITTLKVLDFSDNALTGEIPMEITKLKN 309
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00037814001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (996 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 524 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-36 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-22 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-20 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-10 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-05 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 3e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 2e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 8e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-36
Identities = 144/463 (31%), Positives = 202/463 (43%), Gaps = 113/463 (24%)
Query: 39 EEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENS 98
EE E LL+FK S+ D LS+W N D C W+G+ C+N + V ++L
Sbjct: 29 EELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNNSS-RVVSIDLS------- 77
Query: 99 RGTVLKGTISPALLKL-------------------------HDLRHLDLSNNHFGGS--- 130
G + G IS A+ +L LR+L+LSNN+F GS
Sbjct: 78 -GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136
Query: 131 ------------------PLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLE 172
+P IGS S L+ L+L + K+P L+ L +L L
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196
Query: 173 NSNLF-----SLG---SLQW---------------LSHLSSLRHLDLSYINLTKSSDWFQ 209
++ L LG SL+W + L+SL HLDL Y NLT
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP--S 254
Query: 210 VVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 269
+ L++L+ L L+ L P SI F+L I +LDLSDN+L S P L +N
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLI-SLDLSDNSL--SGEIPELVIQLQN 309
Query: 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
++ L+L N+ G IP A + L+ L L SN+ G IPK GK +L L L N L+
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369
Query: 330 GDLSEMIQNLSGGCTM-----NSLEG--------------VCLEGNDITGPLPDLGGFSS 370
G++ E + + SG NSLEG V L+ N +G LP F+
Sbjct: 370 GEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTK 426
Query: 371 LKI---LVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
L + L + N L G I+ + L+ LSL RN F G +P
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 8e-22
Identities = 108/372 (29%), Positives = 151/372 (40%), Gaps = 69/372 (18%)
Query: 102 VLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161
+L G I + L+ LDL N G +P + +L+ L +L L+ + ++PR
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELG 209
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
+ L +++L +NL S + L+SL HLDL Y NLT + L++L+ L
Sbjct: 210 QMKSLKWIYLGYNNL-SGEIPYEIGGLTSLNHLDLVYNNLTGPIP--SSLGNLKNLQYLF 266
Query: 222 LHSCALPPINPSSIWHFNLST-----------------------SIETLDLSDNN----- 253
L+ L P SI F+L ++E L L NN
Sbjct: 267 LYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324
Query: 254 ------LPSSSVYP-WLFNLS----------RNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296
LP V W S N+ L+L N+L G IPE +L
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384
Query: 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMI-------------QNLSGGC 343
L L SN LEG IPK G SL R+ L N SG+L NL G
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444
Query: 344 T-----MNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESL 398
M SL+ + L N G LPD G L+ L L N+ +G + + L L +L L
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 399 SLGRNSFTGKIP 410
L N +G+IP
Sbjct: 505 KLSENKLSGEIP 516
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 5e-20
Identities = 106/355 (29%), Positives = 160/355 (45%), Gaps = 43/355 (12%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162
L G I P++ L L LDLS+N G +PE + L L L+L K+P
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALTS 330
Query: 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLT--------KSSDWFQVV--- 211
L L L L SN FS + L ++L LDLS NLT S + F+++
Sbjct: 331 LPRLQVLQLW-SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389
Query: 212 -----------AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS-SV 259
RSL+ + L + PS L + LD+S+NNL +
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL---VYFLDISNNNLQGRINS 446
Query: 260 YPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLN 319
W ++Q L+L N G +P++F L L L+ N+ G +P+ G + L
Sbjct: 447 RKWDMP---SLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELM 502
Query: 320 RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILV---L 376
+L L NKLSG++ + LS + SL+ L N ++G +P FS + +L L
Sbjct: 503 QLKLSENKLSGEIPD---ELSSCKKLVSLD---LSHNQLSGQIPA--SFSEMPVLSQLDL 554
Query: 377 GENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCG 431
+N+L+G I K+L + L +++ N G +P + NAS AGN +LCG
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 348 LEGVCLEGNDITGPLP-DLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
L+ + L GN I G +P LG +SL++L L N NG+I +SL QL L L+L NS +
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
Query: 407 GKIP--LGTQL---QSFNASVYAGNPELCGLP 433
G++P LG +L SFN + N LCG+P
Sbjct: 504 GRVPAALGGRLLHRASFN---FTDNAGLCGIP 532
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-08
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 37 IDEEREALLTFKQSLVDEY-GVLSSWGKDNDKRDCCKWRGVRCS 79
++++R+ALL FK SL + G LSSW + D C W GV C
Sbjct: 1 LNDDRDALLAFKSSLNGDPSGALSSW--NPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNK 327
R++Q +NL NS++G+IP + + SL L L+ N G IP+ G++ SL L L N
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 328 LSGDL 332
LSG +
Sbjct: 502 LSGRV 506
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 16/267 (5%)
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI 230
L + +L S + L +L +L + +++L L L I
Sbjct: 69 LLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI 128
Query: 231 NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290
L ++++ LDLSDN + S+ L NL N++ L+L FN L +P+
Sbjct: 129 TDIPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNL-PNLKNLDLSFNDLS-DLPKLLSN 184
Query: 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350
+ +L L L+ N++ +P + +L L L N + I+ LS + +L G
Sbjct: 185 LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-------IELLSSLSNLKNLSG 236
Query: 351 VCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
+ L N + +G S+L+ L L N++ + SL L L L L NS + +P
Sbjct: 237 LELSNNKLEDLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALP 294
Query: 411 LGTQLQSFNASVYAGNPELCGLPLPNK 437
L N L L K
Sbjct: 295 L--IALLLLLLELLLNLLLTLKALELK 319
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN 302
++++LDLS+N L + + F N++ L+L N+L PEAF + SLR L L+ N
Sbjct: 1 NLKSLDLSNNRL--TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Query: 303 EL 304
L
Sbjct: 59 NL 60
|
Length = 60 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 54/234 (23%), Positives = 83/234 (35%), Gaps = 34/234 (14%)
Query: 200 NLTKSSDWFQVVAKLRSLKTLVLHSCALPPIN----PSSIWHFNLSTSIETLDLSDNNLP 255
L K+ +++ KL L+ L L L S++ S++ L LS N
Sbjct: 8 ELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP---QPSLKELCLSLNET- 63
Query: 256 SSSVYPWL-----FNLSRNIQYLNLGFNSLQGSIP---EAFQLMVSLRFLYLTSNELEGG 307
+Q L+L N+L E+ SL+ L L +N L
Sbjct: 64 GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123
Query: 308 IPKFFGK-----MCSLNRLCLPYNKLSGDLSEMIQN-LSGGCTMNSLEGVCLEGNDITGP 361
+ K +L +L L N+L G E + L + L L N I
Sbjct: 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN---LANNGIGDA 180
Query: 362 -----LPDLGGFSSLKILVLGENRLNGTIDKSLSQLLK----LESLSLGRNSFT 406
L +L++L L N L +L++ L LE L+LG N+ T
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 48/148 (32%), Positives = 65/148 (43%), Gaps = 39/148 (26%)
Query: 38 DEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCK----WRGVRCS--NKTGH--VKVLN 89
EE AL T K SL G+ +G + D C W G C + G + L
Sbjct: 371 LEEVSALQTLKSSL----GLPLRFGWNGDP--CVPQQHPWSGADCQFDSTKGKWFIDGLG 424
Query: 90 LRRSDDENSRGTV-------------------LKGTISPALLKLHDLRHLDLSNNHFGGS 130
L D++ RG + ++G I P+L + L LDLS N F GS
Sbjct: 425 L---DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 131 PLPEFIGSLSRLRYLNLSCGTSLL-KVP 157
+PE +G L+ LR LNL+ G SL +VP
Sbjct: 482 -IPESLGQLTSLRILNLN-GNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 27/206 (13%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
+LL+ L+ L L+NN G L L +L K+ L
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-------KDLPPALEKL--------VLGR 146
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLHSCA 226
LE ++ +L L L+ L+L+ + + + + +L+ L L++
Sbjct: 147 NRLEGASCEALAKA--LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Query: 227 LPPINPSSIWH-FNLSTSIETLDLSDNNL---PSSSVYPWLFNLSRNIQYLNLGFNSLQ- 281
L S++ S+E L+L DNNL ++++ L + + ++ L+L N +
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264
Query: 282 ---GSIPEAFQLMVSLRFLYLTSNEL 304
+ E SL L L N+
Sbjct: 265 DGAKDLAEVLAEKESLLELDLRGNKF 290
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 8e-04
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 165 GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLH 223
L L L N+ L + L +L+ LDLS NLT S + F L SL++L L
Sbjct: 1 NLKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLS 56
Query: 224 SCAL 227
L
Sbjct: 57 GNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 141 RLRYLNLSCGTSLLKVP-RPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSY 198
L+ L+LS L +P F+ L L L L +NL S+ S + S L SLR LDLS
Sbjct: 1 NLKSLDLSN-NRLTVIPDGAFKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSG 57
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.98 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.87 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.86 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.85 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.84 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.84 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.83 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.81 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.79 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.74 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.71 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.56 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.55 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.54 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.4 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.33 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.3 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.23 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.23 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.22 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.22 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.22 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.2 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.18 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.16 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.15 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.99 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.97 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.86 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.86 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.85 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.84 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.81 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.76 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.71 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.64 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.6 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.53 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.31 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.26 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.22 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.16 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.13 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.1 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.1 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.01 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.01 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.94 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.9 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.88 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.85 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.75 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.62 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.95 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.89 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.72 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.48 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.38 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.86 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.82 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.48 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.0 | |
| PF04478 | 154 | Mid2: Mid2 like cell wall stress sensor; InterPro: | 90.5 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 89.01 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 88.02 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 87.28 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 87.28 | |
| PF02439 | 38 | Adeno_E3_CR2: Adenovirus E3 region protein CR2; In | 87.03 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 86.97 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 86.91 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.76 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 86.18 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 85.87 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 85.87 | |
| PF08693 | 40 | SKG6: Transmembrane alpha-helix domain; InterPro: | 85.23 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 82.76 | |
| PF08374 | 221 | Protocadherin: Protocadherin; InterPro: IPR013585 | 80.28 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=404.04 Aligned_cols=284 Identities=35% Similarity=0.508 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccceEeCCCCCcEEEEEcCCCCCC----------------CCCC
Q 009835 37 IDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDE----------------NSRG 100 (524)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~----------------~~~~ 100 (524)
.++|+.||++||+++.+|.+.+.+|+ .+.+||.|.||+|++ .++|+.|+|+++.+. ++.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 45799999999999988877889997 577899999999974 468999999886431 3455
Q ss_pred CcceeecCcccc-CCCCCCEEEccCCCCCCC---------------------CCccccCCCCCCCEEEccCCCCCccCCc
Q 009835 101 TVLKGTISPALL-KLHDLRHLDLSNNHFGGS---------------------PLPEFIGSLSRLRYLNLSCGTSLLKVPR 158 (524)
Q Consensus 101 ~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~---------------------~~p~~l~~l~~L~~L~L~~n~~~~~~p~ 158 (524)
|.+.+.+|..+. .+++|++|+|++|.+++. .+|..++.+++|++|+|++|.+.+.+|.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 566666665544 555555555555544332 1344455555555555555555555555
Q ss_pred cccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc----
Q 009835 159 PFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS---- 234 (524)
Q Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---- 234 (524)
.++++++|++|++++|.+.... +..+.++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..|..
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEI--PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcC--ChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 5555555555555555544221 233445555555555555544321 234444445555555544444333320
Q ss_pred ------------------hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccce
Q 009835 235 ------------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296 (524)
Q Consensus 235 ------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 296 (524)
..+... ++|++|++++|.+.+ .+|..+.... +|+.|++++|.+++.+|..+..+++|+.
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~-~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSG-EIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhc-cCcCEEECcCCeecc-CCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 022222 555555555555544 3444443333 6666777777666666667777777777
Q ss_pred EeecCcccccccchhhcCCCCCCEEEccCCCCCC
Q 009835 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG 330 (524)
Q Consensus 297 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 330 (524)
|++++|.+.+.+|..++.+++|+.|++++|.+++
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 7777777776666655555555555555555443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=315.22 Aligned_cols=297 Identities=33% Similarity=0.440 Sum_probs=219.3
Q ss_pred CCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCcccc-CCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCC
Q 009835 97 NSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFI-GSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSN 175 (524)
Q Consensus 97 ~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (524)
++.++.+.+.++..+..+++|++|+|++|.+.+. +|..+ ..+++|++|+|++|.+++.+|. +.+++|++|+|++|.
T Consensus 75 ~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~ 151 (968)
T PLN00113 75 DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM 151 (968)
T ss_pred EecCCCccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc
Confidence 5667888999999999999999999999999876 77654 4899999999999998887774 457888888888888
Q ss_pred CCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCC
Q 009835 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLP 255 (524)
Q Consensus 176 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 255 (524)
+... .+..+.++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..|. .+..+ ++|++|++++|.+.
T Consensus 152 ~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l-~~L~~L~L~~n~l~ 225 (968)
T PLN00113 152 LSGE-IPNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPR--ELGQM-KSLKWIYLGYNNLS 225 (968)
T ss_pred cccc-CChHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCCh--HHcCc-CCccEEECcCCccC
Confidence 7632 2355778888888888888776553 35677888888888888887777664 44444 77888888888776
Q ss_pred CCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHH
Q 009835 256 SSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEM 335 (524)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 335 (524)
+ .+|..+.... +|++|++++|.+++.+|..++++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+..|..
T Consensus 226 ~-~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 226 G-EIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred C-cCChhHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 5 6666665555 7778888777777777777777777777777777777777777777777777777777777777776
Q ss_pred HHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 336 IQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 336 ~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+..++ +|+.|++++|.+++..|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 304 ~~~l~------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 304 VIQLQ------NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred HcCCC------CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 66554 666666666666665554 5666666666666666666666666666666666666666665555
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-34 Score=277.30 Aligned_cols=326 Identities=26% Similarity=0.349 Sum_probs=243.8
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
+|++.|+|.+| .++..-.+++..++.||.||||.|.|+.. --..|..-.++++|+|++|.|+...-..|..
T Consensus 125 ghl~~L~L~~N--------~I~sv~se~L~~l~alrslDLSrN~is~i-~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 125 GHLEKLDLRHN--------LISSVTSEELSALPALRSLDLSRNLISEI-PKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred cceeEEeeecc--------ccccccHHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCCCceEEeeccccccccccccccc
Confidence 56677777663 45544555666777777777777777664 2344555566777777777777766667777
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+.+|.+|.|+.|+++.++. ..|.++++|+.|+|..|.+.... .-.|.++++|+.|.+..|.+...... .++.+ .
T Consensus 196 lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive--~ltFqgL~Sl~nlklqrN~I~kL~DG--~Fy~l-~ 269 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVE--GLTFQGLPSLQNLKLQRNDISKLDDG--AFYGL-E 269 (873)
T ss_pred cchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeeh--hhhhcCchhhhhhhhhhcCcccccCc--ceeee-c
Confidence 7777777777777776655 55677777777777777766553 23567777777777777777665553 33444 8
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
++++|+|..|++.. .-..+++.+. .|+.|++|+|.|...-++.+...++|+.|+|+.|+++...+.+|..+..|++|+
T Consensus 270 kme~l~L~~N~l~~-vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 270 KMEHLNLETNRLQA-VNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ccceeecccchhhh-hhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 88888888888854 3445666666 888888888888877778888888888888888888877788888888888888
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC----CCCCCCCcEEEccCCcCccccchhhhcCCCCCEE
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD----LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESL 398 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 398 (524)
|++|.++......|..+. +|++|||++|.++..+.+ |.++++|+.|++.+|++..+....|.+++.|+.|
T Consensus 348 Ls~Nsi~~l~e~af~~ls------sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLS------SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred ccccchHHHHhhHHHHhh------hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 888888877777777766 899999999999886653 7889999999999999997777889999999999
Q ss_pred ECcCCcCeeeCCCCCcccccccccccCCCCCCC
Q 009835 399 SLGRNSFTGKIPLGTQLQSFNASVYAGNPELCG 431 (524)
Q Consensus 399 ~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~~C~ 431 (524)
||.+|.+...-|....-..+++..+..-..+|+
T Consensus 422 dL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPMELKELVMNSSSFLCD 454 (873)
T ss_pred cCCCCcceeecccccccchhhhhhhcccceEEe
Confidence 999999987777654444566666666667776
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-32 Score=269.59 Aligned_cols=324 Identities=23% Similarity=0.215 Sum_probs=210.5
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.+..||+++| .+...-+..|.++++|+.+++.+|.++. +|...+...+|+.|+|.+|.|...-.+++..+
T Consensus 79 ~t~~LdlsnN--------kl~~id~~~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 79 QTQTLDLSNN--------KLSHIDFEFFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred ceeeeecccc--------ccccCcHHHHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhH
Confidence 4667888885 4555555556666666666666666655 55555555556666666555555555555555
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc---------
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS--------- 234 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------- 234 (524)
+.|++|||+.|.|+.++. ..|..-.++++|+|++|.++... ...|..+.+|..|.|+.|+++..++..
T Consensus 149 ~alrslDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchhhcccC-CCCCCCCCceEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 555555555555554443 22344444555555555554443 134444444444444444444444310
Q ss_pred ------------hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCc
Q 009835 235 ------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN 302 (524)
Q Consensus 235 ------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 302 (524)
...|+.+++|+.|.+..|++ ..+.+..|-.+.++++|+|..|+++..-..++.++++|+.|++|.|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I--~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI--SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCc--ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 01222335555555555555 2334444444557888888888887666677788888888888888
Q ss_pred ccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcC
Q 009835 303 ELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRL 381 (524)
Q Consensus 303 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l 381 (524)
.|....++++.-+++|++|+|++|+|+...+..|..+. .|++|+|++|.++..... |..+.+|++|||++|.+
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHH------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 88888888888888888888888888888888888876 888888988888866554 78888899999999988
Q ss_pred ccccc---hhhhcCCCCCEEECcCCcCeeeCCCC--CcccccccccccCCCCC
Q 009835 382 NGTID---KSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNASVYAGNPEL 429 (524)
Q Consensus 382 ~~~~p---~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~gn~~~ 429 (524)
+..+. ..|.++++|+.|++.+|++. .||.. ..+..++...+.+|+..
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcce
Confidence 76654 34777889999999999887 55542 34666777778777753
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-30 Score=252.23 Aligned_cols=308 Identities=25% Similarity=0.347 Sum_probs=196.2
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCC-ccCCccccCCCCCcEEEccCCCCCCCCCchh
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSL-LKVPRPFQYLSGLVYLHLENSNLFSLGSLQW 184 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 184 (524)
.+|+.++.+.+|++|.+++|++.. +...++.++.|+.+++..|++. .-+|..+-++..|.+|||++|++...+ ..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP--~~ 121 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP--TN 121 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcc--hh
Confidence 566666666677777776666654 4455556666666666665552 234555556666666666666665333 34
Q ss_pred cCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCC----------
Q 009835 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL---------- 254 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l---------- 254 (524)
+...+++-.|+||+|++..++. ..+.++..|-.|+|++|.+...+| .+..+ ..|++|+|++|.+
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn--~lfinLtDLLfLDLS~NrLe~LPP---Q~RRL-~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPN--SLFINLTDLLFLDLSNNRLEMLPP---QIRRL-SMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCc--hHHHhhHhHhhhccccchhhhcCH---HHHHH-hhhhhhhcCCChhhHHHHhcCcc
Confidence 5555566666666666655542 344555555555555555555544 23333 4444444444433
Q ss_pred --------------CCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCE
Q 009835 255 --------------PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320 (524)
Q Consensus 255 --------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 320 (524)
+-..+|.++-.+. +|..+|+|.|++. .+|+.+.++++|+.|+||+|.++ .+....+.-.+|++
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLET 272 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhh-hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence 2234455444444 6677777777776 56677777777777777777776 33333444556777
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCc--cCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEE
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT--GPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESL 398 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 398 (524)
|++|.|+++ ..|..+..++ .|+.|.+.+|+++ |++..++.+..|+++..++|.+. ..|+.++.+.+|+.|
T Consensus 273 LNlSrNQLt-~LP~avcKL~------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLT------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred hccccchhc-cchHHHhhhH------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 777777776 4566666655 7888888888775 34444888888888888888887 788889999999999
Q ss_pred ECcCCcCeeeCCCC-CcccccccccccCCCCCCCCCCC
Q 009835 399 SLGRNSFTGKIPLG-TQLQSFNASVYAGNPELCGLPLP 435 (524)
Q Consensus 399 ~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C~~~~~ 435 (524)
.|+.|++. .+|+. ..+..++...+..||.+.-+|.+
T Consensus 345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence 99999988 45544 45677888888889888765543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-29 Score=248.69 Aligned_cols=302 Identities=24% Similarity=0.281 Sum_probs=261.7
Q ss_pred CcEEEEEcCCCCCCCCCCCcce-eecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLK-GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
.-|+.+|++++ .++ +.+|....+++.++.|.|...++.. +|+.++.+.+|++|.+++|+++.. -..++
T Consensus 7 pFVrGvDfsgN--------DFsg~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~~v-hGELs 75 (1255)
T KOG0444|consen 7 PFVRGVDFSGN--------DFSGDRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLISV-HGELS 75 (1255)
T ss_pred ceeecccccCC--------cCCCCcCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhHhh-hhhhc
Confidence 45788888885 566 6789999999999999999999887 899999999999999999998744 45688
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
.++.|+.+++.+|++...+.+..+..+..|..||||+|++...+ ..+...+++-.|+|++|++..++. .++-.+
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP---~~LE~AKn~iVLNLS~N~IetIPn---~lfinL 149 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP---TNLEYAKNSIVLNLSYNNIETIPN---SLFINL 149 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcc---hhhhhhcCcEEEEcccCccccCCc---hHHHhh
Confidence 99999999999999998888899999999999999999999885 588999999999999999988766 445444
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc-cccchhhcCCCCCCE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE-GGIPKFFGKMCSLNR 320 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~ 320 (524)
..|-.|||++|++ ..+|+.+..+. .|++|+|++|.+.-..-..+..+++|++|.+++.+-+ ..+|.++..+.+|..
T Consensus 150 tDLLfLDLS~NrL--e~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRL--EMLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred HhHhhhccccchh--hhcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 8999999999999 78899998888 9999999999987544445667788899999887644 467889999999999
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
+|+|.|.+. .+|+.+..+. +|+.|+||+|+|+......+.+.+|++|++|.|+++ .+|+.+..+++|+.|.+
T Consensus 227 vDlS~N~Lp-~vPecly~l~------~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 227 VDLSENNLP-IVPECLYKLR------NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred ccccccCCC-cchHHHhhhh------hhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHh
Confidence 999999987 6788887776 899999999999977666777889999999999998 88999999999999999
Q ss_pred cCCcCe-eeCCCC
Q 009835 401 GRNSFT-GKIPLG 412 (524)
Q Consensus 401 ~~N~l~-~~~p~~ 412 (524)
.+|+++ .-||++
T Consensus 299 n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSG 311 (1255)
T ss_pred ccCcccccCCccc
Confidence 999876 235544
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-26 Score=217.18 Aligned_cols=282 Identities=27% Similarity=0.309 Sum_probs=151.9
Q ss_pred ceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccc-cCCCCCcEEEccCCCCCCCCC
Q 009835 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPF-QYLSGLVYLHLENSNLFSLGS 181 (524)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~ 181 (524)
+-+.+|+.++.+..|+.|+|.+|.+.. +| .|.++..|++|.++.|.+. .+|.+. .++.+|.+|||..|++.+.+
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~--lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~P- 268 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRF--LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVP- 268 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhccccc--CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCc-
Confidence 335666666666666666666666654 44 5666666666666655554 344443 36666777777777766544
Q ss_pred chhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCC-----------------------------
Q 009835 182 LQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINP----------------------------- 232 (524)
Q Consensus 182 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----------------------------- 232 (524)
..+..+.+|++||+|+|.+++.+. .++++ .|+.|.+.+|.+..+-.
T Consensus 269 -de~clLrsL~rLDlSNN~is~Lp~---sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 269 -DEICLLRSLERLDLSNNDISSLPY---SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred -hHHHHhhhhhhhcccCCccccCCc---ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 345666667777777776666642 56666 66666666665421000
Q ss_pred ---------CchhhhcccCcccEEEccCCCCCCCCCCchhhhccc--cccEEEeeccccccccchhhhcccccceE-eec
Q 009835 233 ---------SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR--NIQYLNLGFNSLQGSIPEAFQLMVSLRFL-YLT 300 (524)
Q Consensus 233 ---------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls 300 (524)
..+.-...+.+.+.|++++-++ ..+|...|.... -.+.++++.|++. ++|..+..++.+.+. .++
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql--t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQL--TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLS 420 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhccccccc--ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhh
Confidence 0000001114556666666666 456666665541 2667777777776 455554444443332 222
Q ss_pred CcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCC----------------------
Q 009835 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI---------------------- 358 (524)
Q Consensus 301 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l---------------------- 358 (524)
+|.+ +.+|..++.+++|..|++++|.+. .+|.+++.+. .|+.|+++.|++
T Consensus 421 nn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv------~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 421 NNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV------RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred cCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhh------hhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence 2222 244555555555555555555443 3344444433 455555555544
Q ss_pred -ccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 359 -TGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 359 -~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
....++ +.++.+|.+|||.+|.+. .+|..++++.+|++|++.||+|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 443333 455555555555555554 45555555555555555555555
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-22 Score=210.68 Aligned_cols=260 Identities=25% Similarity=0.283 Sum_probs=207.1
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
..|+++.+ .++ .+|+.+. ++|+.|++++|+++. +|.. +++|++|++++|+++. +|.. .++
T Consensus 204 ~~LdLs~~--------~Lt-sLP~~l~--~~L~~L~L~~N~Lt~--LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~s 263 (788)
T PRK15387 204 AVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLTS--LPAL---PPELRTLEVSGNQLTS-LPVL---PPG 263 (788)
T ss_pred cEEEcCCC--------CCC-cCCcchh--cCCCEEEccCCcCCC--CCCC---CCCCcEEEecCCccCc-ccCc---ccc
Confidence 45788885 666 6787775 489999999999987 5653 5899999999999885 4542 468
Q ss_pred CcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCccc
Q 009835 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIE 245 (524)
Q Consensus 166 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 245 (524)
|++|++++|.+..++. ..++|+.|++++|.++..+. ..++|+.|++++|.+.+... .+..|+
T Consensus 264 L~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~------~p~~L~~LdLS~N~L~~Lp~-------lp~~L~ 325 (788)
T PRK15387 264 LLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASLPA-------LPSELC 325 (788)
T ss_pred cceeeccCCchhhhhh-----chhhcCEEECcCCccccccc------cccccceeECCCCccccCCC-------Cccccc
Confidence 9999999999886553 23679999999999998763 24789999999999987533 126789
Q ss_pred EEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccC
Q 009835 246 TLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPY 325 (524)
Q Consensus 246 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 325 (524)
.|++++|.++ .+|. .+.+|+.|++++|++++ +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++
T Consensus 326 ~L~Ls~N~L~--~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~ 391 (788)
T PRK15387 326 KLWAYNNQLT--SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSG 391 (788)
T ss_pred ccccccCccc--cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecC
Confidence 9999999994 4553 23489999999999994 5543 4578899999999984 6653 35799999999
Q ss_pred CCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcC
Q 009835 326 NKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 326 n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 405 (524)
|.+++. |.. .++|+.|++++|++++. |.+ ..+|+.|++++|+++ .+|..+.++++|+.|++++|++
T Consensus 392 N~Lt~L-P~l---------~s~L~~LdLS~N~LssI-P~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 392 NRLTSL-PVL---------PSELKELMVSGNRLTSL-PML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CcccCC-CCc---------ccCCCEEEccCCcCCCC-Ccc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 999853 322 13899999999999864 432 357899999999998 7899999999999999999999
Q ss_pred eeeCCC
Q 009835 406 TGKIPL 411 (524)
Q Consensus 406 ~~~~p~ 411 (524)
++.+|.
T Consensus 458 s~~~~~ 463 (788)
T PRK15387 458 SERTLQ 463 (788)
T ss_pred CchHHH
Confidence 988765
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-24 Score=222.23 Aligned_cols=224 Identities=25% Similarity=0.281 Sum_probs=118.2
Q ss_pred CCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcc----------------------cCcccE
Q 009835 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNL----------------------STSIET 246 (524)
Q Consensus 189 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~----------------------~~~L~~ 246 (524)
.+|+++++++|+++..+ ..+..+.+|+.++..+|.+..... .++.. .+.|++
T Consensus 241 ~nl~~~dis~n~l~~lp---~wi~~~~nle~l~~n~N~l~~lp~---ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP---EWIGACANLEALNANHNRLVALPL---RISRITSLVSLSAAYNELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred ccceeeecchhhhhcch---HHHHhcccceEecccchhHHhhHH---HHhhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence 35666666666666654 467778888888888888754332 22222 255666
Q ss_pred EEccCCCCCCCCCCchhhhcccc-ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccC
Q 009835 247 LDLSDNNLPSSSVYPWLFNLSRN-IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPY 325 (524)
Q Consensus 247 L~L~~n~l~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 325 (524)
|+|..|++ ..+|+.++..... |..|+.+.|++....-..=...+.|+.|++.+|.++...-+.+.+.+.|+.|+|++
T Consensus 315 LdL~~N~L--~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 315 LDLQSNNL--PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeehhccc--cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 66666665 3444443333211 23333333332211100001234456666666666655555566666666666666
Q ss_pred CCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcC
Q 009835 326 NKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 326 n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 405 (524)
|++.......+.++. .|++|+||+|+++..+..+..++.|++|...+|++. ..| .+..+++|+.+|++.|++
T Consensus 393 NrL~~fpas~~~kle------~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLE------ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred cccccCCHHHHhchH------HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence 666655555555544 566666666666644433555555666665555555 344 555555666666665555
Q ss_pred eee-CCCCCcccccccccccCCCC
Q 009835 406 TGK-IPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 406 ~~~-~p~~~~~~~~~~~~~~gn~~ 428 (524)
+-. +|...-...++...+.||.+
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCcc
Confidence 522 22111113444445555554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-24 Score=204.60 Aligned_cols=251 Identities=28% Similarity=0.348 Sum_probs=123.1
Q ss_pred cCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcC
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLS 186 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 186 (524)
+.+.+.++..|.+|++++|.+.. +|.+++.+..++.|+.++|++. .+|+.++.+.+|+.|+.++|.+...+ +.++
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~--~~i~ 134 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELP--DSIG 134 (565)
T ss_pred ccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecC--chHH
Confidence 34445566666666666666654 5566666666666666665554 45555666666666666666555433 3345
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhc
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 266 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 266 (524)
.+..|+.++..+|+++..+ .++..+.+|..+++.+|.+....+. ..++ +.|++||...|-+ ..+|+.++.+
T Consensus 135 ~~~~l~dl~~~~N~i~slp---~~~~~~~~l~~l~~~~n~l~~l~~~---~i~m-~~L~~ld~~~N~L--~tlP~~lg~l 205 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLP---EDMVNLSKLSKLDLEGNKLKALPEN---HIAM-KRLKHLDCNSNLL--ETLPPELGGL 205 (565)
T ss_pred HHhhhhhhhccccccccCc---hHHHHHHHHHHhhccccchhhCCHH---HHHH-HHHHhcccchhhh--hcCChhhcch
Confidence 5555555555555555543 2444444555555555555444442 2222 4455555554444 3444444443
Q ss_pred cccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCC
Q 009835 267 SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 267 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 346 (524)
- +|+.|++..|++. ..| .|.++..|+.|+++.|.+.....+...+++++..||+..|+++ ..|+.+..+.
T Consensus 206 ~-~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr------ 275 (565)
T KOG0472|consen 206 E-SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR------ 275 (565)
T ss_pred h-hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh------
Confidence 3 4444455555444 333 4444444555555554444222222224444444455544444 2333333322
Q ss_pred CccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCc
Q 009835 347 SLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 382 (524)
+|++||+|+|.+++.+++++++ .|+.|-+.+|.+.
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 4444444444444444444444 4444444444443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=213.12 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=53.3
Q ss_pred cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSL 371 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L 371 (524)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|......|.+ .++|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~--~~nL 848 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDI--STNI 848 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCcccccccc--cccc
Confidence 455566666665555556666666666666666654333333222 1235555555555443333332 2455
Q ss_pred cEEEccCCcCccccchhhhcCCCCCEEECcCC
Q 009835 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403 (524)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 403 (524)
+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 55556555555 45555555556666666553
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-23 Score=194.13 Aligned_cols=298 Identities=24% Similarity=0.288 Sum_probs=177.4
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccC-CCCCCCCCchhcCCCCCCcEEE
Q 009835 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLEN-SNLFSLGSLQWLSHLSSLRHLD 195 (524)
Q Consensus 117 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~ 195 (524)
-..++|..|+|+.. .+.+|+.+++|+.|||++|.|+.+-|++|.++++|.+|-+.+ |+|+.++. ..|.++..|+.|.
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHHh
Confidence 34566666666664 455666666666666666666666666666666655555544 55665554 5566666666666
Q ss_pred ccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhh----------h
Q 009835 196 LSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLF----------N 265 (524)
Q Consensus 196 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~----------~ 265 (524)
+.-|++.-.. .+.+..+++|..|.+.+|.+...... .+..+..++.+.+..|.+...--.++.. .
T Consensus 147 lNan~i~Cir--~~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 147 LNANHINCIR--QDALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred cChhhhcchh--HHHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 6666655553 35566666666666666655444331 1222255555555555421100011111 1
Q ss_pred ccccccEEEeeccccccccchhhhc-ccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCCCCchhHHHHhccCCC
Q 009835 266 LSRNIQYLNLGFNSLQGSIPEAFQL-MVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC 343 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 343 (524)
.........+.+.++..+-+..|.. ...+..--.+.+...+..| ..|.++++|+.|+|++|+++++-+.+|..+.
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a--- 298 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA--- 298 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh---
Confidence 1111222222333333222222211 1122111122232333334 4688899999999999999999999998877
Q ss_pred CCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCccccccccc
Q 009835 344 TMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASV 422 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 422 (524)
.+++|.|..|++..+... |.++..|++|+|.+|+|+...|..|..+.+|.+|++-.|++.+.+...+.-.++....
T Consensus 299 ---~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 299 ---ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred ---hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 899999999998865544 8889999999999999998899999999999999999999887665433333333333
Q ss_pred ccCCC
Q 009835 423 YAGNP 427 (524)
Q Consensus 423 ~~gn~ 427 (524)
..|||
T Consensus 376 ~~~~~ 380 (498)
T KOG4237|consen 376 VVGNP 380 (498)
T ss_pred CCCCC
Confidence 34444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=198.92 Aligned_cols=323 Identities=19% Similarity=0.218 Sum_probs=231.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC---CCCCCCCCCCCCCCCCcccc----------------eEeCCCCCcEEEEEcCCCC
Q 009835 34 MRCIDEEREALLTFKQSLVDEY---GVLSSWGKDNDKRDCCKWRG----------------VRCSNKTGHVKVLNLRRSD 94 (524)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~---~~~~~W~~~~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~ 94 (524)
.+..++|...++++.+.+.-|. ..-..|+ .+.++|.-.. |.| ..+.|+.+..-+..
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~---~~~~fc~~~~~~~~~l~~~~~~~~~tv~~--~~~~vt~l~~~g~~ 132 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPAYADNIQYSRG---GADQYCILSENSQEILSIVFNTEGYTVEG--GGKSVTYTRVTESE 132 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCchhhccccccC---CCCcccccCCcchhhheeeecCCceEEec--CCCccccccccccc
Confidence 4557889999999888886553 1234588 5778996544 556 34567777765532
Q ss_pred CCCC---C--------------CCcceeecC---cc-----ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccC
Q 009835 95 DENS---R--------------GTVLKGTIS---PA-----LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC 149 (524)
Q Consensus 95 ~~~~---~--------------~~~l~~~~~---~~-----l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~ 149 (524)
.... . .+...+.-+ .. -+-..+...|+++++.++. +|..+. ++|+.|+|++
T Consensus 133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP--EQITTLILDN 208 (754)
T ss_pred ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc--cCCcEEEecC
Confidence 2100 0 000000000 01 1223567899999999986 676654 5899999999
Q ss_pred CCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCC
Q 009835 150 GTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229 (524)
Q Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 229 (524)
|.+.. +|..+. .+|++|++++|.++.++. .+ .++|+.|++++|.+...+. .+. .+|+.|++++|.+..
T Consensus 209 N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~--~l--~~~L~~L~Ls~N~L~~LP~---~l~--s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 209 NELKS-LPENLQ--GNIKTLYANSNQLTSIPA--TL--PDTIQEMELSINRITELPE---RLP--SALQSLDLFHNKISC 276 (754)
T ss_pred CCCCc-CChhhc--cCCCEEECCCCccccCCh--hh--hccccEEECcCCccCcCCh---hHh--CCCCEEECcCCccCc
Confidence 99884 565543 589999999999987653 22 3589999999999987753 332 589999999999986
Q ss_pred CCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccc
Q 009835 230 INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP 309 (524)
Q Consensus 230 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 309 (524)
.+. .+ .++|+.|++++|+++ .+|..+ +++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|
T Consensus 277 LP~---~l---~~sL~~L~Ls~N~Lt--~LP~~l---p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 277 LPE---NL---PEELRYLSVYDNSIR--TLPAHL---PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LP 341 (754)
T ss_pred ccc---cc---CCCCcEEECCCCccc--cCcccc---hhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CC
Confidence 433 22 268999999999994 455433 2479999999999984 55544 3689999999999984 67
Q ss_pred hhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhh
Q 009835 310 KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSL 389 (524)
Q Consensus 310 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 389 (524)
..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++..++.+. .+|+.|++++|++. .+|..+
T Consensus 342 ~~l~--~sL~~L~Ls~N~L~~-LP~~lp--------~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 342 ASLP--PELQVLDVSKNQITV-LPETLP--------PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred hhhc--CcccEEECCCCCCCc-CChhhc--------CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 6553 699999999999984 455443 289999999999997655543 37999999999998 555544
Q ss_pred ----hcCCCCCEEECcCCcCe
Q 009835 390 ----SQLLKLESLSLGRNSFT 406 (524)
Q Consensus 390 ----~~l~~L~~L~l~~N~l~ 406 (524)
..++.+..|++.+|+++
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhcCCCccEEEeeCCCcc
Confidence 44588899999999987
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-20 Score=208.25 Aligned_cols=287 Identities=20% Similarity=0.242 Sum_probs=180.2
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.++.|++.++. + ..+|..+ ...+|++|++++|.+.. ++..+..+++|++|+|+++.....+| .++.+
T Consensus 590 ~Lr~L~~~~~~--------l-~~lP~~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l 656 (1153)
T PLN03210 590 KLRLLRWDKYP--------L-RCMPSNF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA 656 (1153)
T ss_pred ccEEEEecCCC--------C-CCCCCcC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCC-ccccC
Confidence 46666666532 1 2344433 34556666666655543 44555555566666665554444444 25555
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
++|++|+|++|... ...+..+.++++|++|++++|. +...+. .+ ++++|+.|++++|......|. ...
T Consensus 657 ~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~---~i-~l~sL~~L~Lsgc~~L~~~p~------~~~ 725 (1153)
T PLN03210 657 TNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPT---GI-NLKSLYRLNLSGCSRLKSFPD------IST 725 (1153)
T ss_pred CcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCC---cC-CCCCCCEEeCCCCCCcccccc------ccC
Confidence 55666666554322 1112335555555566555542 222221 11 455555555555543322221 113
Q ss_pred cccEEEccCCCCCCCCCC-----------------------------chhhhccccccEEEeeccccccccchhhhcccc
Q 009835 243 SIETLDLSDNNLPSSSVY-----------------------------PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS 293 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~-----------------------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 293 (524)
+|++|++++|.+ ..+| +.....+++|+.|++++|...+.+|..++++++
T Consensus 726 nL~~L~L~~n~i--~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 726 NISWLDLDETAI--EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred CcCeeecCCCcc--ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 444555544443 1222 112223458999999999888789999999999
Q ss_pred cceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcE
Q 009835 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKI 373 (524)
Q Consensus 294 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~ 373 (524)
|+.|++++|...+.+|..+ .+++|+.|++++|......|.. .++|+.|+|++|.++..+..+..+++|+.
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------~~nL~~L~Ls~n~i~~iP~si~~l~~L~~ 873 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------STNISDLNLSRTGIEEVPWWIEKFSNLSF 873 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---------ccccCEeECCCCCCccChHHHhcCCCCCE
Confidence 9999999987655777665 7899999999998654444332 23899999999999976556899999999
Q ss_pred EEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 374 LVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 374 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
|++++|.-...+|..+..+++|+.+++++|.-.
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 999996554468888899999999999998633
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.8e-23 Score=210.61 Aligned_cols=299 Identities=29% Similarity=0.396 Sum_probs=179.0
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
++..||++++ ..+.+|..+..+.+|+.|+++.|.|.. .|....++.+|++|.|.+|.+ ...|..+..+
T Consensus 46 ~L~~l~lsnn---------~~~~fp~~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l-~~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNN---------QISSFPIQITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRL-QSLPASISEL 113 (1081)
T ss_pred eeEEeecccc---------ccccCCchhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchh-hcCchhHHhh
Confidence 4677888873 456888889999999999999999887 688889999999999996654 4788899999
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCC----------------------------------------CCCcE-EEccCCCCC
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHL----------------------------------------SSLRH-LDLSYINLT 202 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l----------------------------------------~~L~~-L~Ls~n~l~ 202 (524)
.+|++|+++.|++...+.. +..+ ..|++ |+|++|.+.
T Consensus 114 knl~~LdlS~N~f~~~Pl~--i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~ 191 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLV--IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME 191 (1081)
T ss_pred hcccccccchhccCCCchh--HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh
Confidence 9999999999987654432 1111 12222 444444444
Q ss_pred CCCCchHhhhcccCCCEEEeeCCCCCCCCCCc---------------hhhhcccCcccEEEccCCCCCCCCCCchhhhcc
Q 009835 203 KSSDWFQVVAKLRSLKTLVLHSCALPPINPSS---------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 267 (524)
Q Consensus 203 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 267 (524)
.. .+..+++|+.|....|.+....... ....-...+|++++++.|++ ..+|.++....
T Consensus 192 ~~-----dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 192 VL-----DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--SNLPEWIGACA 264 (1081)
T ss_pred hh-----hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh--hcchHHHHhcc
Confidence 11 2223333333333333322111000 00001125666666666666 34455555544
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC------
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG------ 341 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------ 341 (524)
+|+.++..+|+++ .+|..+....+|+.|.+..|.+. .+|..+.+++.|++|+|..|++...++..+..+..
T Consensus 265 -nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 265 -NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred -cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 6666666666664 55666666666666666666666 56777788999999999999998665544432210
Q ss_pred -------------CCCCCCccEEEcCCCCCccC-CCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 342 -------------GCTMNSLEGVCLEGNDITGP-LPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 342 -------------~~~~~~L~~L~Ls~n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
...++.|+.|++.+|.++.. .|.+.++++|++|+|++|++.......+.++..|+.|+||||+++
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 11233445555555555543 233555555555555555555333334455555555555555554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-22 Score=188.15 Aligned_cols=132 Identities=25% Similarity=0.225 Sum_probs=111.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccC-CCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~~~ 161 (524)
...+.|+|..| .++...+.+|+.+++||.|||++|.|+.+ -|++|.+++.|.+|-+.+ |+|+......|+
T Consensus 67 ~~tveirLdqN--------~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQN--------QISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccC--------CcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 45788888884 78877788999999999999999999998 899999999999988877 788777777899
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 226 (524)
++..|+.|.+.-|++.-+.. +.|..+++|..|.+.+|.+..+.. ..+..+..++.+++..|.
T Consensus 138 gL~slqrLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHHHHHHHhcChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCc
Confidence 99999999999998875554 778899999999999988877642 467777888888887776
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=193.13 Aligned_cols=258 Identities=24% Similarity=0.273 Sum_probs=201.2
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
..-..|+++++.++. +|..+. ++|+.|++++|+++. +|. ..++|++|++++|+++.++. ..++|++|
T Consensus 201 ~~~~~LdLs~~~Lts--LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~-----lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCc--CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC-----ccccccee
Confidence 557789999999985 788775 489999999999885 554 35899999999999997653 24799999
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.++..+.. ..+|+.|++++|.++..+. .+++|+.|++++|++. .++. .+.+|+.|+
T Consensus 268 ~Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~-------~p~~L~~LdLS~N~L~--~Lp~----lp~~L~~L~ 328 (788)
T PRK15387 268 SIFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPV-------LPPGLQELSVSDNQLA--SLPA----LPSELCKLW 328 (788)
T ss_pred eccCCchhhhhhc------hhhcCEEECcCCccccccc-------cccccceeECCCCccc--cCCC----Ccccccccc
Confidence 9999998876532 2578899999999986543 1378999999999994 3443 234799999
Q ss_pred eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcC
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
+++|.+++ +|.. ..+|+.|+|++|++++ +|.. .++|+.|++++|.++. +|.. ..+|+.|+++
T Consensus 329 Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---------~~~L~~LdLs 390 (788)
T PRK15387 329 AYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---------PSGLKELIVS 390 (788)
T ss_pred cccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---------ccccceEEec
Confidence 99999984 5542 3589999999999994 5543 3578999999999985 3332 1379999999
Q ss_pred CCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCCCCC
Q 009835 355 GNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNPELC 430 (524)
Q Consensus 355 ~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C 430 (524)
+|++++.++. .++|+.|++++|++++ +|... .+|+.|++++|+++ .+|.. ..+..+..+.+.+|+...
T Consensus 391 ~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 391 GNRLTSLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCcccCCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 9999964432 3689999999999984 66543 46889999999998 67754 346677778899999754
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=193.58 Aligned_cols=255 Identities=19% Similarity=0.257 Sum_probs=195.5
Q ss_pred ccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCC
Q 009835 73 WRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTS 152 (524)
Q Consensus 73 w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~ 152 (524)
+.-..|.. ...+.|++++. .++ .+|..+. ++|+.|+|++|.++. +|..+. ++|++|++++|.+
T Consensus 170 ~r~~~Cl~--~~~~~L~L~~~--------~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~L 232 (754)
T PRK15370 170 QRMRDCLK--NNKTELRLKIL--------GLT-TIPACIP--EQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQL 232 (754)
T ss_pred HHHHhhcc--cCceEEEeCCC--------CcC-cCCcccc--cCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCcc
Confidence 44445643 45688999885 444 3555543 479999999999996 676554 5899999999998
Q ss_pred CccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCC
Q 009835 153 LLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINP 232 (524)
Q Consensus 153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 232 (524)
. .+|..+. .+|+.|+|++|.+..++. .+ .++|++|++++|.++..+. .+ .++|+.|++++|.++....
T Consensus 233 t-sLP~~l~--~~L~~L~Ls~N~L~~LP~--~l--~s~L~~L~Ls~N~L~~LP~---~l--~~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 233 T-SIPATLP--DTIQEMELSINRITELPE--RL--PSALQSLDLFHNKISCLPE---NL--PEELRYLSVYDNSIRTLPA 300 (754)
T ss_pred c-cCChhhh--ccccEEECcCCccCcCCh--hH--hCCCCEEECcCCccCcccc---cc--CCCCcEEECCCCccccCcc
Confidence 7 4566553 479999999999986653 23 3589999999999987653 23 2589999999999987543
Q ss_pred CchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhh
Q 009835 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFF 312 (524)
Q Consensus 233 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 312 (524)
.+ .++|+.|++++|.++ .+|..+ +++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 301 ---~l---p~sL~~L~Ls~N~Lt--~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 301 ---HL---PSGITHLNVQSNSLT--ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred ---cc---hhhHHHHHhcCCccc--cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh
Confidence 11 267999999999994 455443 3589999999999985 676553 79999999999998 577665
Q ss_pred cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC----CCCCCCCcEEEccCCcCc
Q 009835 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD----LGGFSSLKILVLGENRLN 382 (524)
Q Consensus 313 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~ 382 (524)
. ++|++|++++|.++.. |..+.. +|+.|++++|+++..+.. ...++.+..|++.+|.++
T Consensus 366 p--~~L~~LdLs~N~Lt~L-P~~l~~--------sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 P--PTITTLDVSRNALTNL-PENLPA--------ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred c--CCcCEEECCCCcCCCC-CHhHHH--------HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 6899999999999854 444443 699999999999865433 345688999999999997
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-20 Score=181.60 Aligned_cols=282 Identities=25% Similarity=0.222 Sum_probs=150.8
Q ss_pred EEccCCCCCCCCCccccCCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCCCCCCCC-----CchhcCCCCC
Q 009835 120 LDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK----VPRPFQYLSGLVYLHLENSNLFSLG-----SLQWLSHLSS 190 (524)
Q Consensus 120 L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~~l~~ 190 (524)
|+|..+.+++......+..+..|++|+++++.++.. ++..+...++|++|+++++.+...+ ....+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444444444333344444444455555555544321 2333344445555555555443100 0123445556
Q ss_pred CcEEEccCCCCCCCCCchHhhhccc---CCCEEEeeCCCCCCCCCCch-hhhccc-CcccEEEccCCCCCCCCCCchh--
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLR---SLKTLVLHSCALPPINPSSI-WHFNLS-TSIETLDLSDNNLPSSSVYPWL-- 263 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~---~L~~L~L~~n~l~~~~~~~~-~~~~~~-~~L~~L~L~~n~l~~~~~~~~~-- 263 (524)
|++|++++|.+.... ...+..+. +|++|++++|.+.+...... ...... ++|+.|++++|.+++ .....+
T Consensus 83 L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~~~~ 159 (319)
T cd00116 83 LQELDLSDNALGPDG--CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG-ASCEALAK 159 (319)
T ss_pred eeEEEccCCCCChhH--HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc-hHHHHHHH
Confidence 666666666555321 22333333 36666666666543111100 011111 566777777777653 111111
Q ss_pred -hhccccccEEEeeccccccc----cchhhhcccccceEeecCcccccc----cchhhcCCCCCCEEEccCCCCCCchhH
Q 009835 264 -FNLSRNIQYLNLGFNSLQGS----IPEAFQLMVSLRFLYLTSNELEGG----IPKFFGKMCSLNRLCLPYNKLSGDLSE 334 (524)
Q Consensus 264 -~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 334 (524)
+...++|++|++++|.+++. ++..+...++|++|++++|.+.+. ++..+..+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 12223677777777777642 233344556788888888877633 334456677888888888888764444
Q ss_pred HHHhccCCCCCCCccEEEcCCCCCccCC----C-CCCCCCCCcEEEccCCcCccc----cchhhhcC-CCCCEEECcCCc
Q 009835 335 MIQNLSGGCTMNSLEGVCLEGNDITGPL----P-DLGGFSSLKILVLGENRLNGT----IDKSLSQL-LKLESLSLGRNS 404 (524)
Q Consensus 335 ~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~-~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~l~~N~ 404 (524)
.+..... ...+.|++|++++|.++... . .+..+++|+.+++++|.++.. ....+... +.|+++++.+|+
T Consensus 240 ~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 240 ALASALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 4432100 01247888888888876211 1 255567888888888888755 33444444 678888888876
Q ss_pred C
Q 009835 405 F 405 (524)
Q Consensus 405 l 405 (524)
+
T Consensus 319 ~ 319 (319)
T cd00116 319 F 319 (319)
T ss_pred C
Confidence 4
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-19 Score=176.66 Aligned_cols=276 Identities=24% Similarity=0.222 Sum_probs=179.3
Q ss_pred cce-eecCccccCCCCCCEEEccCCCCCCC---CCccccCCCCCCCEEEccCCCCCc------cCCccccCCCCCcEEEc
Q 009835 102 VLK-GTISPALLKLHDLRHLDLSNNHFGGS---PLPEFIGSLSRLRYLNLSCGTSLL------KVPRPFQYLSGLVYLHL 171 (524)
Q Consensus 102 ~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~~~~------~~p~~~~~l~~L~~L~L 171 (524)
.++ +.....+..+..|++|+++++.++.. .++..+...+.|++|+++++.+.+ .++..+..+++|++|++
T Consensus 9 ~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 9 LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 444 34445566677788888888887543 145556677788888888877652 23445677888889999
Q ss_pred cCCCCCCCCCchhcCCC---CCCcEEEccCCCCCCC--CCchHhhhcc-cCCCEEEeeCCCCCCCCCCc-hhhhcccCcc
Q 009835 172 ENSNLFSLGSLQWLSHL---SSLRHLDLSYINLTKS--SDWFQVVAKL-RSLKTLVLHSCALPPINPSS-IWHFNLSTSI 244 (524)
Q Consensus 172 ~~n~l~~~~~~~~~~~l---~~L~~L~Ls~n~l~~~--~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L 244 (524)
++|.+.... ...+..+ ++|++|++++|.+++. ..+...+..+ ++|++|++++|.+++..... ...+....+|
T Consensus 89 ~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 89 SDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred cCCCCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 888876322 2333333 4489999988887743 1123455666 88899999999887532210 1122222689
Q ss_pred cEEEccCCCCCCCCCCchhhhc---cccccEEEeecccccccc----chhhhcccccceEeecCcccccccchhhc----
Q 009835 245 ETLDLSDNNLPSSSVYPWLFNL---SRNIQYLNLGFNSLQGSI----PEAFQLMVSLRFLYLTSNELEGGIPKFFG---- 313 (524)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~~~---~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---- 313 (524)
++|++++|.+.+ .....+... .++|++|++++|.+++.. ...+..+++|++|++++|.+++.....+.
T Consensus 168 ~~L~l~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 168 KELNLANNGIGD-AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred CEEECcCCCCch-HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 999999998864 222222221 238999999999887443 34456678899999999988753333332
Q ss_pred -CCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC----C-CCCC-CCCcEEEccCCcC
Q 009835 314 -KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP----D-LGGF-SSLKILVLGENRL 381 (524)
Q Consensus 314 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~----~-~~~l-~~L~~L~Ls~N~l 381 (524)
..+.|++|++++|.+++.....+.... ..+++|+++++++|.++.... . +... +.|+.|++.+|.+
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVL--AEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHH--hcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 237899999999988744333332211 123489999999999986522 2 4444 6889999888764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-19 Score=150.35 Aligned_cols=181 Identities=30% Similarity=0.440 Sum_probs=154.3
Q ss_pred hhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCC
Q 009835 236 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM 315 (524)
Q Consensus 236 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 315 (524)
.++.. ..++.|.+++|++ ..+|+.+..+. +|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 28 gLf~~-s~ITrLtLSHNKl--~~vppnia~l~-nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFNM-SNITRLTLSHNKL--TVVPPNIAELK-NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred cccch-hhhhhhhcccCce--eecCCcHHHhh-hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 34555 7888999999999 67899999988 9999999999998 68889999999999999999998 899999999
Q ss_pred CCCCEEEccCCCCCC-chhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCC
Q 009835 316 CSLNRLCLPYNKLSG-DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLK 394 (524)
Q Consensus 316 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 394 (524)
|.|+.||+.+|++.. ..|..|..+. .|+.|+|++|.+.-.+|+.+++++|+.|.+..|.+. .+|.+++.++.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~------tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMT------TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred chhhhhhccccccccccCCcchhHHH------HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 999999999999874 4566666554 899999999999988888999999999999999998 78999999999
Q ss_pred CCEEECcCCcCeeeCCCCCcccccc---cccccCCCCC
Q 009835 395 LESLSLGRNSFTGKIPLGTQLQSFN---ASVYAGNPEL 429 (524)
Q Consensus 395 L~~L~l~~N~l~~~~p~~~~~~~~~---~~~~~gn~~~ 429 (524)
|++|.+.+|+++-..|+...+.... ......|||.
T Consensus 175 lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred HHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 9999999999997666544433332 1234667764
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=152.49 Aligned_cols=151 Identities=26% Similarity=0.387 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC----cccceEeCCC--C--CcEEEEEcCCCCCCCCCCCccee
Q 009835 34 MRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCC----KWRGVRCSNK--T--GHVKVLNLRRSDDENSRGTVLKG 105 (524)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~~--~--~~v~~L~L~~~~~~~~~~~~l~~ 105 (524)
..+.+.|..||+++|.++.++.. .+|. +.+|| .|.||.|... . .+|+.|+|+++ .+.|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n--------~L~g 432 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ--------GLRG 432 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCCC--------Cccc
Confidence 35677899999999999875532 4786 33332 7999999522 1 25899999985 8899
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..++++++|++|+|++|.+.+. +|..++.+++|+.|+|++|.+.+.+|+.++++++|++|+|++|.+..... ..+
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l 510 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP-AAL 510 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC-hHH
Confidence 9999999999999999999999987 99999999999999999999999999999999999999999998874322 333
Q ss_pred CC-CCCCcEEEccCCC
Q 009835 186 SH-LSSLRHLDLSYIN 200 (524)
Q Consensus 186 ~~-l~~L~~L~Ls~n~ 200 (524)
.. ..++..+++.+|.
T Consensus 511 ~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 511 GGRLLHRASFNFTDNA 526 (623)
T ss_pred hhccccCceEEecCCc
Confidence 32 2344555555553
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-16 Score=133.92 Aligned_cols=160 Identities=29% Similarity=0.407 Sum_probs=80.0
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
.++++.+.|.+++|+++..+. .++.+.+|+.|++++|++...++ .+..+ ++|+.|+++-|++ ...|..++.
T Consensus 30 f~~s~ITrLtLSHNKl~~vpp---nia~l~nlevln~~nnqie~lp~---~issl-~klr~lnvgmnrl--~~lprgfgs 100 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPP---NIAELKNLEVLNLSNNQIEELPT---SISSL-PKLRILNVGMNRL--NILPRGFGS 100 (264)
T ss_pred cchhhhhhhhcccCceeecCC---cHHHhhhhhhhhcccchhhhcCh---hhhhc-hhhhheecchhhh--hcCccccCC
Confidence 344445555555555555432 44455555555555555544443 33333 5555555555555 233444443
Q ss_pred ccccccEEEeecccccc-ccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCC
Q 009835 266 LSRNIQYLNLGFNSLQG-SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 344 (524)
.+ .|+.||++.|++.. .+|..|-.+..|+.|++++|.+. .+|...+++++|+.|.+..|.+- ..|.+++.+.
T Consensus 101 ~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt---- 173 (264)
T KOG0617|consen 101 FP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT---- 173 (264)
T ss_pred Cc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHH----
Confidence 33 55555555555542 24555555555555556655555 45555555555555555555543 3444444443
Q ss_pred CCCccEEEcCCCCCccCCC
Q 009835 345 MNSLEGVCLEGNDITGPLP 363 (524)
Q Consensus 345 ~~~L~~L~Ls~n~l~~~~~ 363 (524)
.|++|.+++|+++-.+|
T Consensus 174 --~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 174 --RLRELHIQGNRLTVLPP 190 (264)
T ss_pred --HHHHHhcccceeeecCh
Confidence 44444444444443333
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=152.46 Aligned_cols=117 Identities=35% Similarity=0.570 Sum_probs=102.3
Q ss_pred CCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCC
Q 009835 317 SLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKL 395 (524)
Q Consensus 317 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 395 (524)
.++.|+|++|.+.+.+|..+..++ +|+.|+|++|.+.+.+|. +..+++|+.|+|++|++++.+|..++++++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~------~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR------HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC------CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 378899999999999999998876 999999999999998886 9999999999999999999999999999999
Q ss_pred CEEECcCCcCeeeCCCCCc--ccccccccccCCCCCCCCCCCCCCC
Q 009835 396 ESLSLGRNSFTGKIPLGTQ--LQSFNASVYAGNPELCGLPLPNKCP 439 (524)
Q Consensus 396 ~~L~l~~N~l~~~~p~~~~--~~~~~~~~~~gn~~~C~~~~~~~c~ 439 (524)
+.|+|++|+++|.+|.... ........+.+|+.+|+.+....|.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999999999997532 2233456789999999877656664
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-14 Score=136.04 Aligned_cols=219 Identities=23% Similarity=0.211 Sum_probs=134.4
Q ss_pred cCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcc
Q 009835 161 QYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNL 240 (524)
Q Consensus 161 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 240 (524)
.++.+|+.+.|.++.+...+.......|++++.|||+.|-+............+++|+.|+++.|.+...... .....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--NTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--cchhh
Confidence 4567788888887777654443456778888888888888887755566777888888888888887654443 11223
Q ss_pred cCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCccccccc-chhhcCCCCCC
Q 009835 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGI-PKFFGKMCSLN 319 (524)
Q Consensus 241 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~ 319 (524)
++.|+.|.++.|+++- .-..++....|+|+.|++..|............+..|+.|||++|++.... -...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 3788888888888864 333444455568888888888532233333445667888888888776322 13456677777
Q ss_pred EEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccC--CCCCCCCCCCcEEEccCCcCc
Q 009835 320 RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGP--LPDLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 320 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~l~~L~~L~Ls~N~l~ 382 (524)
.|+++.+.+....-.....+.....+++|++|+++.|++... ...+..+++|+.|.+..|.++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 777777766533211111111112344666666666666432 122444555555555555554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-13 Score=136.92 Aligned_cols=195 Identities=27% Similarity=0.322 Sum_probs=142.9
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhc
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 266 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 266 (524)
.+..-...|++.|++...+ ..+..+..|+.+.+..|.+..+.. .+.+. ..|..|||+.|++ ...|..++.+
T Consensus 73 ~ltdt~~aDlsrNR~~elp---~~~~~f~~Le~liLy~n~~r~ip~---~i~~L-~~lt~l~ls~Nql--S~lp~~lC~l 143 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELP---EEACAFVSLESLILYHNCIRTIPE---AICNL-EALTFLDLSSNQL--SHLPDGLCDL 143 (722)
T ss_pred cccchhhhhccccccccCc---hHHHHHHHHHHHHHHhccceecch---hhhhh-hHHHHhhhccchh--hcCChhhhcC
Confidence 3444455667777777664 355666677777777777766555 45555 7888888888888 5567777766
Q ss_pred cccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCC
Q 009835 267 SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 267 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 346 (524)
+ |+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++.. +|.++..++
T Consensus 144 p--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp------ 212 (722)
T KOG0532|consen 144 P--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP------ 212 (722)
T ss_pred c--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc------
Confidence 5 888888888887 67777888888888888888888 677778888888888888888874 455555664
Q ss_pred CccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCC---CCCEEECcCC
Q 009835 347 SLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLL---KLESLSLGRN 403 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---~L~~L~l~~N 403 (524)
|..||+|+|+++.++-.|.+|+.|++|-|.+|.+. ..|..++-.- -.++|+..-+
T Consensus 213 -Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 -LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -eeeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88888888888876666888888888888888887 4555554322 2456676666
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-13 Score=124.58 Aligned_cols=256 Identities=21% Similarity=0.271 Sum_probs=118.1
Q ss_pred cCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCCCCc----cCCccccCCCCCcEEEccCCCCCCC
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGTSLL----KVPRPFQYLSGLVYLHLENSNLFSL 179 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (524)
+-+.+-.+..++.++|++|.+.... +...+.+.++|+..+++ +-++| .+|+++..+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l---------------- 84 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKML---------------- 84 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHH----------------
Confidence 3345566778888888888775431 23445566677777776 23333 233322100
Q ss_pred CCchhcCCCCCCcEEEccCCCCCCC--CCchHhhhcccCCCEEEeeCCCCCCCCCCch----------hhhcccCcccEE
Q 009835 180 GSLQWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLHSCALPPINPSSI----------WHFNLSTSIETL 247 (524)
Q Consensus 180 ~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~----------~~~~~~~~L~~L 247 (524)
...+..+++|++||||+|-+... ..+..-+.++..|++|.|.+|.+.......+ ......+.|+++
T Consensus 85 --~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 85 --SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred --HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 02233444555555555554432 2222334455666666666665432211100 000111455555
Q ss_pred EccCCCCCCCC--CCchhhhccccccEEEeeccccccc----cchhhhcccccceEeecCcccccc----cchhhcCCCC
Q 009835 248 DLSDNNLPSSS--VYPWLFNLSRNIQYLNLGFNSLQGS----IPEAFQLMVSLRFLYLTSNELEGG----IPKFFGKMCS 317 (524)
Q Consensus 248 ~L~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~ 317 (524)
...+|++-... ..+..++..+.|+.+.+..|.|... +...+..+++|+.|||.+|-++.. +...+..+++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 55555542100 1111222223455555555544311 122334445555555555544421 1223334444
Q ss_pred CCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccc----cchhhhcCC
Q 009835 318 LNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT----IDKSLSQLL 393 (524)
Q Consensus 318 L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~ 393 (524)
|+.|++++|.+.......|...- -...|+|++|.+.+|.++.. +...+...+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al------------------------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDAL------------------------KESAPSLEVLELAGNEITRDAALALAACMAEKP 298 (382)
T ss_pred heeecccccccccccHHHHHHHH------------------------hccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence 44445554444443333332210 12356666666666666532 223344566
Q ss_pred CCCEEECcCCcC
Q 009835 394 KLESLSLGRNSF 405 (524)
Q Consensus 394 ~L~~L~l~~N~l 405 (524)
.|..|+|++|.+
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 677777777776
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-11 Score=125.01 Aligned_cols=197 Identities=29% Similarity=0.420 Sum_probs=86.8
Q ss_pred EEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCC-CCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 119 HLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS-GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 119 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
.+++..|.+.. ....+..++.++.|++.+|.++. +|.....+. +|+.|++++|++..++ ..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhh--hhhhccccccccccC
Confidence 34455444422 12333334455555555554442 223333332 5555555555554332 124455555555555
Q ss_pred CCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec
Q 009835 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF 277 (524)
Q Consensus 198 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 277 (524)
+|++...+. ..... +.|+.|++++|++ ..++... .....|++|.+++
T Consensus 172 ~N~l~~l~~---~~~~~---------------------------~~L~~L~ls~N~i--~~l~~~~-~~~~~L~~l~~~~ 218 (394)
T COG4886 172 FNDLSDLPK---LLSNL---------------------------SNLNNLDLSGNKI--SDLPPEI-ELLSALEELDLSN 218 (394)
T ss_pred Cchhhhhhh---hhhhh---------------------------hhhhheeccCCcc--ccCchhh-hhhhhhhhhhhcC
Confidence 555544431 22244 4444555555544 2233322 1121355555555
Q ss_pred cccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCC
Q 009835 278 NSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357 (524)
Q Consensus 278 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~ 357 (524)
|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|.++.... ++.+. +++.|++++|.
T Consensus 219 N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~------~l~~L~~s~n~ 288 (394)
T COG4886 219 NSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLT------NLRELDLSGNS 288 (394)
T ss_pred Ccce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccC------ccCEEeccCcc
Confidence 5322 23334444455555555555444 223444445555555555555543322 22222 55555555555
Q ss_pred CccCCC
Q 009835 358 ITGPLP 363 (524)
Q Consensus 358 l~~~~~ 363 (524)
+...++
T Consensus 289 ~~~~~~ 294 (394)
T COG4886 289 LSNALP 294 (394)
T ss_pred ccccch
Confidence 554443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-12 Score=110.78 Aligned_cols=131 Identities=23% Similarity=0.268 Sum_probs=42.1
Q ss_pred cCCCCCCEEEccCCCCCCCCCccccC-CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 112 LKLHDLRHLDLSNNHFGGSPLPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
.+..++++|+|++|.|+.. +.++ .+.+|+.|+|++|.+... +.+..+++|++|++++|.++++.. .....+++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCc
Confidence 3444567777777777653 2343 466777777777777643 246667777777777777765542 11235677
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEc
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDL 249 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L 249 (524)
|++|++++|++....+ ...+..+++|+.|++.+|.+.....-...+...+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777777766644 356666777777777777665433222222333366666654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-11 Score=123.89 Aligned_cols=197 Identities=29% Similarity=0.389 Sum_probs=87.9
Q ss_pred EEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhccc-CCCEEEeeCCCCCCCCCCchhhhcccCcccE
Q 009835 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR-SLKTLVLHSCALPPINPSSIWHFNLSTSIET 246 (524)
Q Consensus 168 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 246 (524)
.+++..|.+.... ..+..++.++.|++.+|.++.++. ....+. +|+.|++++|.+..... .+... ++|+.
T Consensus 97 ~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~i~~---~~~~~~~nL~~L~l~~N~i~~l~~---~~~~l-~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITDIPP---LIGLLKSNLKELDLSDNKIESLPS---PLRNL-PNLKN 167 (394)
T ss_pred eeeccccccccCc--hhhhcccceeEEecCCcccccCcc---ccccchhhcccccccccchhhhhh---hhhcc-ccccc
Confidence 4555555542111 223344556666666665555532 222232 45555555555444321 11222 55555
Q ss_pred EEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCC
Q 009835 247 LDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 247 L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
|++++|++ ..++....... +|+.|++++|++. .+|........|+.|.+++|.+. ..+..+..+.++
T Consensus 168 L~l~~N~l--~~l~~~~~~~~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-------- 234 (394)
T COG4886 168 LDLSFNDL--SDLPKLLSNLS-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-------- 234 (394)
T ss_pred cccCCchh--hhhhhhhhhhh-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc--------
Confidence 55555554 22333222222 4455555555544 33333333333444444444322 233334444444
Q ss_pred CCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 327 KLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 327 ~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
..+.+.+|++...+..+..+++++.|++++|.++...+ ++.+.+++.|++++|.++
T Consensus 235 ----------------------~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 235 ----------------------SGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----------------------cccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 44444444444332224445555555555555553222 555555555555555555
Q ss_pred eeCC
Q 009835 407 GKIP 410 (524)
Q Consensus 407 ~~~p 410 (524)
...|
T Consensus 291 ~~~~ 294 (394)
T COG4886 291 NALP 294 (394)
T ss_pred ccch
Confidence 4443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-13 Score=130.70 Aligned_cols=177 Identities=20% Similarity=0.309 Sum_probs=150.0
Q ss_pred hcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcc
Q 009835 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291 (524)
Q Consensus 212 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 291 (524)
-.+.--...+++.|++..... ....+ ..|+.+.+..|.+ ..+++.+..+. .|+.|+++.|+++ ..|..++.+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~---~~~~f-~~Le~liLy~n~~--r~ip~~i~~L~-~lt~l~ls~NqlS-~lp~~lC~l 143 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPE---EACAF-VSLESLILYHNCI--RTIPEAICNLE-ALTFLDLSSNQLS-HLPDGLCDL 143 (722)
T ss_pred ccccchhhhhccccccccCch---HHHHH-HHHHHHHHHhccc--eecchhhhhhh-HHHHhhhccchhh-cCChhhhcC
Confidence 344455678889998877655 33444 7788999999998 67888888887 8999999999998 678788777
Q ss_pred cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSL 371 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L 371 (524)
+ |+.|.+++|+++ .+|..++.++.|..||.+.|.+. ..|..++.+. +|+.|++..|.+...++++..+ .|
T Consensus 144 p-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~------slr~l~vrRn~l~~lp~El~~L-pL 213 (722)
T KOG0532|consen 144 P-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT------SLRDLNVRRNHLEDLPEELCSL-PL 213 (722)
T ss_pred c-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH------HHHHHHHhhhhhhhCCHHHhCC-ce
Confidence 5 999999999999 78888999999999999999987 4556666655 8999999999999888887744 59
Q ss_pred cEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
..||++.|+++ .+|..|.+|+.|++|-|.+|+++.
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 99999999999 899999999999999999999984
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-12 Score=124.70 Aligned_cols=213 Identities=22% Similarity=0.175 Sum_probs=110.7
Q ss_pred CCCCCCEEEccCCCCCccCC-ccccCCCCCcEEEccCCCCCCCCCc-hhcCCCCCCcEEEccCCCCCCCCCchHhhhccc
Q 009835 138 SLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215 (524)
Q Consensus 138 ~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 215 (524)
++++|+...|.++....... .....+++++.|||++|-+..+... .....+++|+.|+++.|.+....+ ...-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhhh
Confidence 45555666555444332111 2344556666666666655433221 223456666666666666554321 11222556
Q ss_pred CCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeecccccccc-chhhhccccc
Q 009835 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSI-PEAFQLMVSL 294 (524)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 294 (524)
.|+.|.++.|.++.... .++....++|+.|+|..|... -+...-...+..|+.|||++|++-... ....+.++.|
T Consensus 198 ~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhccccc--ceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 66677777766653222 133333377777777776321 111222233346777777777665321 1345567777
Q ss_pred ceEeecCcccccc-cchh-----hcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCcc
Q 009835 295 RFLYLTSNELEGG-IPKF-----FGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360 (524)
Q Consensus 295 ~~L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~ 360 (524)
+.|+++.+.+... .|+. ...+++|++|+++.|++.+. ..+.....+++|+.|.+..|.++.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-----~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-----RSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-----cccchhhccchhhhhhcccccccc
Confidence 7777777766632 1222 34567788888888877532 111111223467777777777764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-12 Score=118.80 Aligned_cols=217 Identities=21% Similarity=0.183 Sum_probs=123.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCCcce----eecCccccCCCCCCEEEccCCCCCCC---CCc-------cccCCCCCCCEEE
Q 009835 81 KTGHVKVLNLRRSDDENSRGTVLK----GTISPALLKLHDLRHLDLSNNHFGGS---PLP-------EFIGSLSRLRYLN 146 (524)
Q Consensus 81 ~~~~v~~L~L~~~~~~~~~~~~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p-------~~l~~l~~L~~L~ 146 (524)
....++.|+|+++ .+. ..+.+.+.+.++|+.-+++.- ++|. .+| ..+..+++|++|+
T Consensus 28 ~~~s~~~l~lsgn--------t~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 28 PMDSLTKLDLSGN--------TFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred ccCceEEEeccCC--------chhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 3467999999996 332 234456777889999999874 2222 133 3345678999999
Q ss_pred ccCCCCCccCCccc----cCCCCCcEEEccCCCCCCCCCc------------hhcCCCCCCcEEEccCCCCCCCC--Cch
Q 009835 147 LSCGTSLLKVPRPF----QYLSGLVYLHLENSNLFSLGSL------------QWLSHLSSLRHLDLSYINLTKSS--DWF 208 (524)
Q Consensus 147 L~~n~~~~~~p~~~----~~l~~L~~L~L~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~n~l~~~~--~~~ 208 (524)
||.|.+....++.| ..+..|++|.|.+|.+...... ...+.-++|+++..+.|++...+ .+.
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 99998876555543 4678888888888877532211 11234456666666666655442 223
Q ss_pred HhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccc----c
Q 009835 209 QVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS----I 284 (524)
Q Consensus 209 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~ 284 (524)
..+...+.|+.+.+..|.+..... ......+..+++|+.|||.+|-++.. +
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~-------------------------~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGV-------------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred HHHHhccccceEEEecccccCchh-------------------------HHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 344455555555555555432211 01111222333555555555555422 2
Q ss_pred chhhhcccccceEeecCcccccccchhh-----cCCCCCCEEEccCCCCCCc
Q 009835 285 PEAFQLMVSLRFLYLTSNELEGGIPKFF-----GKMCSLNRLCLPYNKLSGD 331 (524)
Q Consensus 285 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~ 331 (524)
...++.+++|+.|++++|.+......++ ...|+|+.|.+.+|.++..
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 3344556666777777766664333222 1346677777777766543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.8e-12 Score=115.09 Aligned_cols=130 Identities=26% Similarity=0.283 Sum_probs=90.4
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
.|+++|+|+|.|+ .+.+.+.-.|.++.|++|.|.+... . .+..+++|+.||||+|.++. ...+-..+. ++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLG------NI 354 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLAE-CVGWHLKLG------NI 354 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhHh-hhhhHhhhc------CE
Confidence 6777788887777 5666666777788888888877632 2 36777788888888887653 233333333 77
Q ss_pred cEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcccc-chhhhcCCCCCEEECcCCcCeeeC
Q 009835 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTI-DKSLSQLLKLESLSLGRNSFTGKI 409 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~ 409 (524)
+.|.|++|.+. ....++.+-+|..||+++|++.... -..++++|-|+.+.+.+|++.+.+
T Consensus 355 KtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 355 KTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88888888775 2334666778888888888876332 245788888888888888888544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-11 Score=112.47 Aligned_cols=232 Identities=22% Similarity=0.215 Sum_probs=139.0
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
++..|..++...--.+.|-....+|-.+.-+++|..+.++++.-.. +-+....-|.|+++...+..+... | .+-..
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe 258 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDV-P-SLLPE 258 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccccc-c-cccch
Confidence 5666666653221112233444566667778888889888875433 222233346788887775443321 1 11111
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCc
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 243 (524)
..+....-+.-.....+....+..-+.|+++||++|.++.+. .++.-+|+++.|++++|.+..... ...+++
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~n-----La~L~~ 330 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQN-----LAELPQ 330 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehh-----hhhccc
Confidence 111111111111111111122233356788888888877764 366677888888888888765433 233388
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccc-cchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG-IPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 322 (524)
|+.|||++|.++ ++..+-.++ .++++|.+++|.+... ..+..+.+|..||+++|++... -...++++|-|+++.
T Consensus 331 L~~LDLS~N~Ls--~~~Gwh~KL-GNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 331 LQLLDLSGNLLA--ECVGWHLKL-GNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ceEeecccchhH--hhhhhHhhh-cCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 888888888873 333333333 3888888888888632 4567788888899999888732 234678888999999
Q ss_pred ccCCCCCCch
Q 009835 323 LPYNKLSGDL 332 (524)
Q Consensus 323 Ls~n~l~~~~ 332 (524)
|.+|.+.+.+
T Consensus 406 L~~NPl~~~v 415 (490)
T KOG1259|consen 406 LTGNPLAGSV 415 (490)
T ss_pred hcCCCccccc
Confidence 9999887654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-11 Score=106.75 Aligned_cols=128 Identities=33% Similarity=0.339 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCcccc-CCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccc-c
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALL-KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPF-Q 161 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~-~ 161 (524)
+.++|+|.++ .++. + +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++.. ++.+ .
T Consensus 20 ~~~~L~L~~n--------~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i-~~~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGN--------QIST-I-ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSI-SEGLDK 85 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHH
T ss_pred cccccccccc--------cccc-c-cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcc-ccchHH
Confidence 5788999985 4442 2 3455 578999999999999874 3578899999999999999865 3344 4
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCC-chHhhhcccCCCEEEeeCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~L~~n 225 (524)
.+++|++|++++|+|.+......+..+++|++|++.+|+++.... -...+..+|+|+.||-..-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 689999999999999998888889999999999999999987643 2456788999999987643
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-10 Score=122.62 Aligned_cols=105 Identities=33% Similarity=0.368 Sum_probs=49.9
Q ss_pred CCCEEEccCCC--CCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 116 DLRHLDLSNNH--FGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 116 ~L~~L~Ls~n~--l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+|++|-+.+|. +... ...+|..++.|+.|||++|.-.+.+|..++++.+|++|+++++.+..+| ..+.+++.|.+
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP--~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP--SGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc--hHHHHHHhhhe
Confidence 45555555553 2222 2333455555555555555555555555555555555555555554333 33555555555
Q ss_pred EEccCCCCCCCCCchHhhhcccCCCEEEeeCC
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 225 (524)
|++..+...... +.....+.+|++|.+...
T Consensus 623 Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccc--cchhhhcccccEEEeecc
Confidence 555544322221 223334555555555443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-11 Score=121.18 Aligned_cols=129 Identities=28% Similarity=0.288 Sum_probs=66.1
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCc
Q 009835 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLR 192 (524)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 192 (524)
.+..++.+++..|.+.. +-..+..+++|+.|++..|.+..... .+..+++|++|++++|.|..+.. +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc---hhhccchh
Confidence 34455555566665554 23345556666666666665553321 14556666666666666654443 44455566
Q ss_pred EEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCC
Q 009835 193 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL 254 (524)
Q Consensus 193 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l 254 (524)
.|++++|.++... .+..++.|+.+++++|.+....+. ..... .+++.+++.+|.+
T Consensus 144 ~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~--~~~~~-~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 144 ELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIEND--ELSEL-ISLEELDLGGNSI 198 (414)
T ss_pred hheeccCcchhcc----CCccchhhhcccCCcchhhhhhhh--hhhhc-cchHHHhccCCch
Confidence 6666666655543 233355555555555555443331 01122 4555555555554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-09 Score=117.03 Aligned_cols=284 Identities=22% Similarity=0.164 Sum_probs=169.9
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCC--CCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGT--SLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHL 188 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~--~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 188 (524)
..+....+...+.+|.+.. ++.... .+.|++|-+..|. +....++.|..++.|++|||++|.-. ..-|..++.+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~--~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~L 594 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH--IAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGEL 594 (889)
T ss_pred ccchhheeEEEEeccchhh--ccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhh
Confidence 3344677888888887765 344433 4479999999886 44444455888999999999986532 2334678999
Q ss_pred CCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCC-CCCchhhhcc
Q 009835 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS-SVYPWLFNLS 267 (524)
Q Consensus 189 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~ 267 (524)
-+|++|++++..+...| ..+.++++|.+|++..+......+ .....+++|++|.+........ .....+ ...
T Consensus 595 i~LryL~L~~t~I~~LP---~~l~~Lk~L~~Lnl~~~~~l~~~~---~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~L 667 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLP---SGLGNLKKLIYLNLEVTGRLESIP---GILLELQSLRVLRLPRSALSNDKLLLKEL-ENL 667 (889)
T ss_pred hhhhcccccCCCccccc---hHHHHHHhhheecccccccccccc---chhhhcccccEEEeeccccccchhhHHhh-hcc
Confidence 99999999999988764 699999999999999887655554 3444349999999977653211 122222 222
Q ss_pred ccccEEEeeccccccccchhhhcccccc----eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCC
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLR----FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC 343 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 343 (524)
.+|+.+....... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+...............
T Consensus 668 e~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~ 744 (889)
T KOG4658|consen 668 EHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL 744 (889)
T ss_pred cchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhh
Confidence 2555555533322 1111222333333 3333333333 4455678889999999999988654332211111000
Q ss_pred CCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeee
Q 009835 344 TMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
.++++..+...++.....+....-.++|+.|.+..+.....+......+..++.+-+..+.+.+.
T Consensus 745 ~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 745 CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 01123333333322221111123457888888888776655555556666666655666655544
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-10 Score=114.42 Aligned_cols=203 Identities=28% Similarity=0.323 Sum_probs=140.9
Q ss_pred cCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcC
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLS 186 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 186 (524)
+-..+..+++|+.|++.+|.|.. +...+..+++|++|++++|.|+... .+..++.|+.|++++|.+..+.. +.
T Consensus 87 ~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~---~~ 159 (414)
T KOG0531|consen 87 ILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG---LE 159 (414)
T ss_pred hhcccccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC---Cc
Confidence 44558889999999999999987 4454888999999999999998764 46778889999999999987665 66
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhc
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 266 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 266 (524)
.+++|+.+++++|.+...... . ...+.+++.+.+.+|.+...... .....+..+++..|.+.. + ..+...
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~-----~~~~~l~~~~l~~n~i~~--~-~~l~~~ 229 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGL-----DLLKKLVLLSLLDNKISK--L-EGLNEL 229 (414)
T ss_pred cchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccch-----HHHHHHHHhhccccccee--c-cCcccc
Confidence 799999999999999887521 1 58899999999999988765442 111455556778887733 1 111111
Q ss_pred c-ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 267 S-RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 267 ~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
. .+|+.+++++|.+. ..+..+..+..+..|++.+|.+...- .+...+.+..+....|.+.
T Consensus 230 ~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred hhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 1 02677777777776 23344555666667777666665321 1233344444555555443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-10 Score=106.78 Aligned_cols=111 Identities=25% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc
Q 009835 165 GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244 (524)
Q Consensus 165 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 244 (524)
.|++|||+...|+.......+..|++|+.|.+.++++.+.. ...+++-.+|+.|+++.+.--.......-+.++ +.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc-s~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC-SRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH--HHHHhccccceeeccccccccchhHHHHHHHhh-hhH
Confidence 36666666555543222233455666666666666655442 345556666666666655322111111112222 556
Q ss_pred cEEEccCCCCCCCCCCchhhhccccccEEEeecc
Q 009835 245 ETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN 278 (524)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 278 (524)
..|+++.+.+....+...+.+..++|+.|+++++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 6666666655442333333344445555555554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-11 Score=109.86 Aligned_cols=183 Identities=22% Similarity=0.136 Sum_probs=101.7
Q ss_pred CCCEEEccCCCCCc-cCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCE
Q 009835 141 RLRYLNLSCGTSLL-KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT 219 (524)
Q Consensus 141 ~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 219 (524)
.|++|||++..++. .+-.-+..+.+|+.|.|.++++.+ +....+++-.+|+.|+++.+.--.....--.+.+++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35555555444432 112223455555556665555542 2223455555666666655432211111234556666666
Q ss_pred EEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCC-CCCCCchhhhccccccEEEeeccc-cccccchhhhcccccceE
Q 009835 220 LVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLP-SSSVYPWLFNLSRNIQYLNLGFNS-LQGSIPEAFQLMVSLRFL 297 (524)
Q Consensus 220 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 297 (524)
|++++|.+...... .......++|+.|+++++.-. +..-.+.+..-+++|.+|||++|. ++......+-.++.|++|
T Consensus 265 LNlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 66666665433321 122333367777777765320 012233445556688888888874 444445567778888998
Q ss_pred eecCcccccccchh---hcCCCCCCEEEccCCC
Q 009835 298 YLTSNELEGGIPKF---FGKMCSLNRLCLPYNK 327 (524)
Q Consensus 298 ~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~ 327 (524)
.++.|.. .+|.. +...|+|.+||+.++-
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 8888864 45554 4567889999988773
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-09 Score=76.82 Aligned_cols=60 Identities=30% Similarity=0.429 Sum_probs=51.0
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcC
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 405 (524)
|+|++|++++|+++...+. |.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3788888888888877765 88889999999999999877778889999999999999875
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-09 Score=75.25 Aligned_cols=60 Identities=32% Similarity=0.419 Sum_probs=42.5
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 667777777777755556677777777777777777766666777777777777777753
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=93.11 Aligned_cols=172 Identities=17% Similarity=0.089 Sum_probs=87.9
Q ss_pred cCCCCCCcEEEccCCCCCCC--CCchHhhhcccCCCEEEeeCCCCCCCCCCch-----------hhhcccCcccEEEccC
Q 009835 185 LSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLHSCALPPINPSSI-----------WHFNLSTSIETLDLSD 251 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~~~~~~L~~L~L~~ 251 (524)
+.+|+.|+..+||+|.+... +....-+++-+.|++|.+++|.+.......+ ...+. +.|++.+...
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEecc
Confidence 45666666666666665543 2223445566677777777776543322211 11122 6777777777
Q ss_pred CCCCCCCCCchh----hhccccccEEEeeccccccccc-----hhhhcccccceEeecCccccccc----chhhcCCCCC
Q 009835 252 NNLPSSSVYPWL----FNLSRNIQYLNLGFNSLQGSIP-----EAFQLMVSLRFLYLTSNELEGGI----PKFFGKMCSL 318 (524)
Q Consensus 252 n~l~~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L 318 (524)
|++.. .+... +..-.+|+.+.+..|.|..... ..+..+.+|+.|||.+|-++... ...+...+.|
T Consensus 167 NRlen--gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 NRLEN--GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred chhcc--CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 77622 22211 1222367777777776653211 12234566777777777665322 2233444556
Q ss_pred CEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCc
Q 009835 319 NRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT 359 (524)
Q Consensus 319 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 359 (524)
+.|.+..|-++.....++-.--+-...|+|..|...+|.+.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 67777776666544433322111112334555555555443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-09 Score=97.58 Aligned_cols=113 Identities=21% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCCcEEEccCCCCCCCCCchhcC-CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLS-HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
.-++.|.+.++.|.+.+....++ .++.++++||.+|.+++..++...+.++|.|+.|+++.|.+...+.. .-... .
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~-~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPL-K 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccccc-c
Confidence 34556666666666555544443 56788899999999988877677788899999999999988755442 00222 7
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeecccc
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSL 280 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l 280 (524)
+|++|.|.+..+.= ....++....|.++.|+++.|++
T Consensus 122 nl~~lVLNgT~L~w-~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSW-TQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ceEEEEEcCCCCCh-hhhhhhhhcchhhhhhhhccchh
Confidence 88888888877743 33333444445777777777744
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-09 Score=111.08 Aligned_cols=58 Identities=26% Similarity=0.356 Sum_probs=28.9
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
.|...+.+.|.+. .+...+.-++.|+.|+|++|+++... .+..++.|++|||++|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence 3444455555554 33444444555555555555555322 4455555555555555544
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.9e-08 Score=63.97 Aligned_cols=41 Identities=51% Similarity=1.016 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCCcccceEeC
Q 009835 38 DEEREALLTFKQSLV-DEYGVLSSWGKDNDKRDCCKWRGVRCS 79 (524)
Q Consensus 38 ~~~~~~l~~~~~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~ 79 (524)
++|++||++||+++. +|.+.+.+|+... +.++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 579999999999999 5668899998311 3799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-09 Score=109.06 Aligned_cols=176 Identities=26% Similarity=0.214 Sum_probs=112.6
Q ss_pred cCCCCCCcEEEccCCCCCCCCCchHhhhcc-cCCCEEEeeCCC------C---CCCCCCchhhhcccCcccEEEccCCCC
Q 009835 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKL-RSLKTLVLHSCA------L---PPINPSSIWHFNLSTSIETLDLSDNNL 254 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L~~L~L~~n~------l---~~~~~~~~~~~~~~~~L~~L~L~~n~l 254 (524)
+..+.+|++|.+.++.+..... +..+ .+|++|...+.- + .+... ..... ..|...+.+.|.+
T Consensus 105 ifpF~sLr~LElrg~~L~~~~G----L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~---ns~~W-n~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKG----LQELRHQLEKLICHNSLDALRHVFASCGGDIS---NSPVW-NKLATASFSYNRL 176 (1096)
T ss_pred eccccceeeEEecCcchhhhhh----hHHHHHhhhhhhhhccHHHHHHHHHHhccccc---cchhh-hhHhhhhcchhhH
Confidence 5667788888888888776432 1111 233333332210 0 01111 00111 5677788888887
Q ss_pred CCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhH
Q 009835 255 PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSE 334 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 334 (524)
...+....+.+.|+.|+|++|+++.. +.+..++.|++|||+.|.+....--...++. |+.|.+++|.++.. .
T Consensus 177 ---~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~ 248 (1096)
T KOG1859|consen 177 ---VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--R 248 (1096)
T ss_pred ---HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--h
Confidence 33455556666899999999999854 3778889999999999998843323334444 88999999877532 2
Q ss_pred HHHhccCCCCCCCccEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcCc
Q 009835 335 MIQNLSGGCTMNSLEGVCLEGNDITGPLP--DLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 335 ~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~ 382 (524)
.+.++. +|+.||+++|-+.+--. -++.+..|+.|+|.+|.+-
T Consensus 249 gie~Lk------sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 249 GIENLK------SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHHhhh------hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 333433 88888888888775322 2566778888888888875
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-08 Score=90.37 Aligned_cols=87 Identities=25% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCCCCEEEccCCCCCCCC-CccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCC
Q 009835 113 KLHDLRHLDLSNNHFGGSP-LPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSL 191 (524)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~-~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 191 (524)
.+++++.|||.+|.|++.. +...+.+||+|++|+|+.|.+...+...-..+.+|++|.|.+..+.-......+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3455666666666655421 222334566666666665555433211112334555555555444322222233344444
Q ss_pred cEEEccCC
Q 009835 192 RHLDLSYI 199 (524)
Q Consensus 192 ~~L~Ls~n 199 (524)
++|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 44444444
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.3e-08 Score=96.42 Aligned_cols=111 Identities=20% Similarity=0.117 Sum_probs=51.2
Q ss_pred ccccceEeecCccc-ccccchhh-cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC-----C
Q 009835 291 MVSLRFLYLTSNEL-EGGIPKFF-GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL-----P 363 (524)
Q Consensus 291 l~~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-----~ 363 (524)
..+|+.|.+++++- +..-...+ .+.+.|+.+++..+..... ..+..+. ...+.|+.+.++++...... .
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sls--~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLASLS--RNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhhhc--cCCchhccCChhhhhhhhhhhhhhhh
Confidence 45555555555542 11111111 1344555555555543211 1232222 12335555555555432211 0
Q ss_pred C-CCCCCCCcEEEccCCcCc-cccchhhhcCCCCCEEECcCCcC
Q 009835 364 D-LGGFSSLKILVLGENRLN-GTIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 364 ~-~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l 405 (524)
. -..+..|+.+.|+++... ...-+.+..++.|+.+++-+++-
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 1 234556677777776543 23344556667777777766643
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.4e-08 Score=78.53 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=56.9
Q ss_pred ccEEEeeccccccccchhh---hcccccceEeecCcccccccchhhc-CCCCCCEEEccCCCCCCchhHHHHhccCCCCC
Q 009835 270 IQYLNLGFNSLQGSIPEAF---QLMVSLRFLYLTSNELEGGIPKFFG-KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 345 (524)
+..++|+.|.+. .+++.. .....|+..+|++|.+. .+|..|. ..+.++.|++++|.+++ +|.+++.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~----- 100 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMP----- 100 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhH-----
Confidence 444555555443 223222 22333444455555555 3333332 23355555555555553 333344433
Q ss_pred CCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 346 NSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
.|+.|+++.|.+...+..+..+.+|-.|+..+|.+. .+|..+..-+.....++.++++.+..|
T Consensus 101 -aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 101 -ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred -HhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 455555555555433333333455555555555554 333322222222233344455554444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.8e-07 Score=98.71 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=91.6
Q ss_pred CCCCEEEccCCCCCCCCCccccC-CCCCCCEEEccCCCCCc-cCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCc
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIG-SLSRLRYLNLSCGTSLL-KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLR 192 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 192 (524)
.+|++||+++...-....|..++ .+|.|++|.+++-.+.. .......++++|..||+++++++.+ ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 56777888776543332444444 47788888887655432 2223345677888888888777755 3377777888
Q ss_pred EEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCC---chhhhcccCcccEEEccCCCCCCCCCCchhhhcccc
Q 009835 193 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPS---SIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 269 (524)
Q Consensus 193 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 269 (524)
+|.+.+-.+....+ ...+-.+++|+.||+|.......... -......+|+|+.||.|++.+.. .+.+.+...-++
T Consensus 199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~-~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE-EILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH-HHHHHHHHhCcc
Confidence 88777766665443 45666778888888877654433210 01222334777777777766654 333333333334
Q ss_pred ccEEE
Q 009835 270 IQYLN 274 (524)
Q Consensus 270 L~~L~ 274 (524)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 44443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.2e-06 Score=75.10 Aligned_cols=109 Identities=27% Similarity=0.313 Sum_probs=80.3
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+.....+||++|.+... ..|..++.|.+|.|.+|+|+.+-|.--.-+++|+.|.|.+|++..++...-+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 34567788998888653 457778889999999898887777666667889999999998888777777788888888
Q ss_pred EEccCCCCCCCCCc-hHhhhcccCCCEEEeeCC
Q 009835 194 LDLSYINLTKSSDW-FQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 194 L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~~n 225 (524)
|.+-+|..+..... .-.+..+++|+.||...-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88888877665221 124556666666666543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-06 Score=77.59 Aligned_cols=220 Identities=17% Similarity=0.134 Sum_probs=110.2
Q ss_pred ccCCCCCcEEEccCCCCCCCCCc---hhcCCCCCCcEEEccCCCCCCCC-C-------chHhhhcccCCCEEEeeCCCCC
Q 009835 160 FQYLSGLVYLHLENSNLFSLGSL---QWLSHLSSLRHLDLSYINLTKSS-D-------WFQVVAKLRSLKTLVLHSCALP 228 (524)
Q Consensus 160 ~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~-~-------~~~~l~~l~~L~~L~L~~n~l~ 228 (524)
+..+..+..++||+|.|..-... ..+.+-.+|+..++++--..-.. . ...++.+||+|+..+|+.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34467788888888877632210 12344567777777654222111 0 2345667788888888888776
Q ss_pred CCCCCch-hhhcccCcccEEEccCCCCCC---CCCCchhhh--------ccccccEEEeeccccccccch-----hhhcc
Q 009835 229 PINPSSI-WHFNLSTSIETLDLSDNNLPS---SSVYPWLFN--------LSRNIQYLNLGFNSLQGSIPE-----AFQLM 291 (524)
Q Consensus 229 ~~~~~~~-~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~~--------~~~~L~~L~Ls~n~l~~~~~~-----~~~~l 291 (524)
...|... .+....+.|++|.+++|.+.. ..+...++. ..|.|+++....|++.. .+. .+..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence 5554311 112222677777777777622 111111111 11356666666666642 111 11222
Q ss_pred cccceEeecCcccccc-----cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC--
Q 009835 292 VSLRFLYLTSNELEGG-----IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-- 364 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-- 364 (524)
.+|+.+.+..|.|... +-..+..+.+|+.|||..|-++-.....++..- |.-+.|++|.+..|-++.....
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchhhccccHHHH
Confidence 4566666666655422 112233456666666666666544333333211 2222456666666555432211
Q ss_pred ---C--CCCCCCcEEEccCCcCc
Q 009835 365 ---L--GGFSSLKILVLGENRLN 382 (524)
Q Consensus 365 ---~--~~l~~L~~L~Ls~N~l~ 382 (524)
| ...|+|+.|-...|...
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhhhhcCCCccccccchhhhc
Confidence 1 12355555555555443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-07 Score=75.70 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=61.2
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
..|+..+|++|.+ ..+|+.+...++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|
T Consensus 53 ~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 5566667777777 4566666666566777777777777 56666777777777777777777 556666667777777
Q ss_pred EccCCCCCCchhH
Q 009835 322 CLPYNKLSGDLSE 334 (524)
Q Consensus 322 ~Ls~n~l~~~~~~ 334 (524)
+..+|.+.....+
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 7777766544444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.4e-06 Score=72.71 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=27.6
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
....+|+++|.+... ..|..++.|..|.+++|+|+...|.--.-+++|..|.|.+|.|
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 445555555555421 2344455555555555555544343333334455555555544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-06 Score=91.93 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=108.1
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCcccc-CCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALL-KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
..++.||++|. ..+...-|..++ .+|.|++|.+++-.+..........++++|..||+|+.+++.. ..++
T Consensus 122 ~nL~~LdI~G~-------~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGS-------ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred HhhhhcCcccc-------chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh
Confidence 45778888774 133444444554 5899999999998876654556678999999999999988765 6788
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc----hHhhhcccCCCEEEeeCCCCCCCCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW----FQVVAKLRSLKTLVLHSCALPPINP 232 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~ 232 (524)
++++|++|.+.+=.+........+.++++|+.||+|.......... .+.-..+|+|+.||.+++.+....-
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 9999999999998888766667788999999999999876655421 1223458999999999888765443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-07 Score=89.06 Aligned_cols=267 Identities=17% Similarity=0.087 Sum_probs=135.5
Q ss_pred ccCCCCCCEEEccCCC-CCCCCCccccCCCCCCCEEEccCCC-CCccCCc-cccCCCCCcEEEccCCC-CCCCCCchhcC
Q 009835 111 LLKLHDLRHLDLSNNH-FGGSPLPEFIGSLSRLRYLNLSCGT-SLLKVPR-PFQYLSGLVYLHLENSN-LFSLGSLQWLS 186 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~-l~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 186 (524)
...++++++|++.++. +++...-..-..+++|++|+|..|. ++...-+ --..+++|++|+++.+. +++-+......
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 3456777777777664 2222112222356777777776633 2222222 22356777777777654 33222223345
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC-CCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA-LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
+++.++.+.+.++.-.+...+...-+.+..+..+++..|. +++... ..+......|+.|+.+++...+......+..
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL--WLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH--HHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 5666666655554322222112222334445555555543 222211 1222333667777777665433244445555
Q ss_pred ccccccEEEeeccc-cccccchhh-hcccccceEeecCcccccc--cchhhcCCCCCCEEEccCCCCC-CchhHHHHhcc
Q 009835 266 LSRNIQYLNLGFNS-LQGSIPEAF-QLMVSLRFLYLTSNELEGG--IPKFFGKMCSLNRLCLPYNKLS-GDLSEMIQNLS 340 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 340 (524)
..++|+.|.++.++ ++..--..+ .+.+.|+.+++.++..... +...-.+++.|+.|.++++... +.....+..
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~-- 395 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS-- 395 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh--
Confidence 55677777777775 332222222 2456777777777654321 2222235677777777777543 221111211
Q ss_pred CCCCCCCccEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcC
Q 009835 341 GGCTMNSLEGVCLEGNDITGPLP--DLGGFSSLKILVLGENRL 381 (524)
Q Consensus 341 ~~~~~~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l 381 (524)
..+.+..|+.+.|+++....... .+..+++|+.+++-+++-
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 12445577777777776553221 256677777777777643
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.3e-05 Score=75.28 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=89.2
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCC-CCCCCCCchhcCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENS-NLFSLGSLQWLSHL 188 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l 188 (524)
.+..+.++++|++++|.++. +|. -..+|++|++++|.-...+|..+ .++|++|++++| .+..++
T Consensus 47 r~~~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------
Confidence 35556889999999998776 562 23469999998866656667655 358999999988 444222
Q ss_pred CCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccc
Q 009835 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR 268 (524)
Q Consensus 189 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 268 (524)
.+|+.|+++.+.......+|. +|+.|.+.++........ . ..++++|++|++++|.. ...|+. ++.
T Consensus 112 ~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~l--p-~~LPsSLk~L~Is~c~~--i~LP~~---LP~ 177 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARI--D-NLISPSLKTLSLTGCSN--IILPEK---LPE 177 (426)
T ss_pred cccceEEeCCCCCcccccCcc------hHhheecccccccccccc--c-cccCCcccEEEecCCCc--ccCccc---ccc
Confidence 468888887766544332222 466777644321110000 0 12347899999998876 233332 345
Q ss_pred cccEEEeeccc
Q 009835 269 NIQYLNLGFNS 279 (524)
Q Consensus 269 ~L~~L~Ls~n~ 279 (524)
+|+.|+++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 89999998764
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.9e-06 Score=76.11 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=48.5
Q ss_pred cCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCC--CCCccCCccccCCCCCcEEEccCCCCCCCCCchh
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQW 184 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n--~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 184 (524)
+..-.-.+..|+.|++.+..++.. ..+..|++|++|.++.| ++.+.++.....+++|++|++++|++..+.....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 444444555666666666655542 23445666777777766 4444444444445666666666666554333333
Q ss_pred cCCCCCCcEEEccCCCCC
Q 009835 185 LSHLSSLRHLDLSYINLT 202 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~ 202 (524)
+..+.+|..|++.+|..+
T Consensus 112 l~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhcchhhhhcccCCcc
Confidence 344444444444444433
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.8e-05 Score=52.51 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=18.4
Q ss_pred ccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 293 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.6e-05 Score=52.75 Aligned_cols=36 Identities=42% Similarity=0.538 Sum_probs=18.3
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCC
Q 009835 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSL 153 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~ 153 (524)
+|++|++++|+|+. +|..+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555554 4444555555555555555544
|
... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.4e-05 Score=73.10 Aligned_cols=112 Identities=22% Similarity=0.244 Sum_probs=61.9
Q ss_pred cccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCc-hhcCCCCCCcEEEccCCCCCCCCCchHhhh
Q 009835 134 EFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSDWFQVVA 212 (524)
Q Consensus 134 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 212 (524)
.....+..|+.|++.+..++.. ..|-.+++|++|.++.|.......+ .....+++|++|++++|.+..... ...+.
T Consensus 37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~ 113 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLK 113 (260)
T ss_pred cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhh
Confidence 3334455666666665555433 2355677778888887743321221 223345777777777777765432 34556
Q ss_pred cccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEE
Q 009835 213 KLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLD 248 (524)
Q Consensus 213 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 248 (524)
.+.+|..|++.+|..+...-.....+.++++|++||
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 666667777766665543332233444445554444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=1.9e-06 Score=79.14 Aligned_cols=103 Identities=25% Similarity=0.247 Sum_probs=80.6
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+.+.+.|+.-++.+.++ ..+.+|+.|+.|.|+-|.|+..- .+..+++|++|.|..|.|.++.....+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45677788888888775 45677899999999989887654 47788999999999999998888888889999999
Q ss_pred EEccCCCCCCCCC---chHhhhcccCCCEEE
Q 009835 194 LDLSYINLTKSSD---WFQVVAKLRSLKTLV 221 (524)
Q Consensus 194 L~Ls~n~l~~~~~---~~~~l~~l~~L~~L~ 221 (524)
|.|..|.-.+... -...+.-+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988765521 123566677777775
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00018 Score=71.55 Aligned_cols=137 Identities=16% Similarity=0.276 Sum_probs=85.8
Q ss_pred hhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeecc-ccccccchhh
Q 009835 210 VVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN-SLQGSIPEAF 288 (524)
Q Consensus 210 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~ 288 (524)
.+..+.+++.|++++|.++..+ ..+.+|++|+++++.--. .+|..+ +++|++|++++| .+. .+|
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP-------~LP~sLtsL~Lsnc~nLt-sLP~~L---P~nLe~L~Ls~Cs~L~-sLP--- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP-------VLPNELTEITIENCNNLT-TLPGSI---PEGLEKLTVCHCPEIS-GLP--- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC-------CCCCCCcEEEccCCCCcc-cCCchh---hhhhhheEccCccccc-ccc---
Confidence 3456789999999999776653 234789999998754322 444432 458999999988 444 444
Q ss_pred hcccccceEeecCcccc--cccchhhcCCCCCCEEEccCCC-CCC-chhHHHHhccCCCCCCCccEEEcCCCCCccCCCC
Q 009835 289 QLMVSLRFLYLTSNELE--GGIPKFFGKMCSLNRLCLPYNK-LSG-DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
.+|+.|+++.+... +.+|. +|+.|.+.+++ ... ..+.. +| ++|++|++++|.....++.
T Consensus 112 ---~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~---LP-----sSLk~L~Is~c~~i~LP~~ 174 (426)
T PRK15386 112 ---ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL---IS-----PSLKTLSLTGCSNIILPEK 174 (426)
T ss_pred ---cccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc---cC-----CcccEEEecCCCcccCccc
Confidence 35777888766543 12332 56677775432 110 11111 22 3799999998886643333
Q ss_pred CCCCCCCcEEEccCCc
Q 009835 365 LGGFSSLKILVLGENR 380 (524)
Q Consensus 365 ~~~l~~L~~L~Ls~N~ 380 (524)
+. .+|+.|.++.|.
T Consensus 175 LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 175 LP--ESLQSITLHIEQ 188 (426)
T ss_pred cc--ccCcEEEecccc
Confidence 33 588889888763
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0015 Score=54.85 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=20.5
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPY 325 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 325 (524)
+|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++|+.+.+..
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 455555442 233233334444545555555443 3333333445554555555543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00022 Score=74.70 Aligned_cols=176 Identities=23% Similarity=0.138 Sum_probs=78.2
Q ss_pred CCCCCEEEccCCCCCcc--CCccccCCCCCcEEEccCC-C-CCCCC--CchhcCCCCCCcEEEccCCC-CCCCCCchHhh
Q 009835 139 LSRLRYLNLSCGTSLLK--VPRPFQYLSGLVYLHLENS-N-LFSLG--SLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVV 211 (524)
Q Consensus 139 l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n-~-l~~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l 211 (524)
++.|+.|.+..+.-... .-.....+++|+.|+++++ . +...+ .......+++|+.|+++++. +++.. ...+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~--l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG--LSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh--HHHH
Confidence 45555555554433222 1123345566666666542 1 11000 11223445666666666665 33331 2222
Q ss_pred h-cccCCCEEEeeCCC-CCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh
Q 009835 212 A-KLRSLKTLVLHSCA-LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ 289 (524)
Q Consensus 212 ~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 289 (524)
. .+++|++|.+.++. +++..-. .+....+.|++|+++.+..........+...+++++.|.+....-
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~--~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLV--SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHH--HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------
Confidence 2 26667777665555 3332221 333334667777777665422111122223344555544322211
Q ss_pred cccccceEeecCcccc---cccchhhcCCCCCCEEEccCCCC
Q 009835 290 LMVSLRFLYLTSNELE---GGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 290 ~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
++.++.+.+.+.... ......+..++.++.+.+..+..
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 333444443332221 12223345666777777766653
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=5.8e-05 Score=69.58 Aligned_cols=104 Identities=19% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCC
Q 009835 139 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 218 (524)
Q Consensus 139 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 218 (524)
+.+.+.|++-++.+.++ ....+++.|++|.|+-|.|+++.. +..|++|++|+|..|.|.+..+ ..-+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhh
Confidence 45566777777776643 224577888888888888776654 6778888888888888777654 45677778888
Q ss_pred EEEeeCCCCCCCCCCch--hhhcccCcccEEE
Q 009835 219 TLVLHSCALPPINPSSI--WHFNLSTSIETLD 248 (524)
Q Consensus 219 ~L~L~~n~l~~~~~~~~--~~~~~~~~L~~L~ 248 (524)
.|.|..|.-.+..+... .....+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88887776655444211 1223346666665
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00037 Score=73.00 Aligned_cols=179 Identities=21% Similarity=0.108 Sum_probs=99.4
Q ss_pred CCCCCcEEEccCCCCC-CCCCchhcCCCCCCcEEEccCC-C-CCCCC-CchHhhhcccCCCEEEeeCCC-CCCCCCCchh
Q 009835 162 YLSGLVYLHLENSNLF-SLGSLQWLSHLSSLRHLDLSYI-N-LTKSS-DWFQVVAKLRSLKTLVLHSCA-LPPINPSSIW 236 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~Ls~n-~-l~~~~-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 236 (524)
.++.|+.|.+..+.-. ..........+++|++|+++++ . ..... ........+++|+.|+++++. +++..-. .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~--~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS--A 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH--H
Confidence 4688888888876433 2222345667888888888873 1 11111 012344566888888888887 4433322 3
Q ss_pred hhcccCcccEEEccCCC-CCCCCCCchhhhccccccEEEeeccccccc--cchhhhcccccceEeecCcccccccchhhc
Q 009835 237 HFNLSTSIETLDLSDNN-LPSSSVYPWLFNLSRNIQYLNLGFNSLQGS--IPEAFQLMVSLRFLYLTSNELEGGIPKFFG 313 (524)
Q Consensus 237 ~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 313 (524)
+....++|++|.+.++. +++ .....+....++|++|+++.+..... +.....++++|+.|.+....-
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------
Confidence 33334788888877776 555 44455556666788888887765311 223344466666655433221
Q ss_pred CCCCCCEEEccCCCCCC---chhHHHHhccCCCCCCCccEEEcCCCCCc
Q 009835 314 KMCSLNRLCLPYNKLSG---DLSEMIQNLSGGCTMNSLEGVCLEGNDIT 359 (524)
Q Consensus 314 ~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 359 (524)
++.++.+.+....... ....... .++.++.+.+..+...
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~------~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILR------SCPKLTDLSLSYCGIS 375 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHh------cCCCcchhhhhhhhcc
Confidence 3445555444432211 1111122 2347777777776633
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0076 Score=50.51 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=46.1
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.|..+++|+.+.+.. .+... -...|..+++|+.+++..+ +.......|.++++|+.+.+.+ .+..++. ..|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccccccc
Confidence 455566666666653 34332 3445666666666666543 4444444566666666666654 3332332 3455666
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeC
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
+|+.+++..+ +.... ...+.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~--~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIG--SSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEH--TTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEc--hhhhcCC-CceEEEECC
Confidence 6666666543 33332 1245555 666666554
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=3.7e-05 Score=79.16 Aligned_cols=189 Identities=29% Similarity=0.280 Sum_probs=108.7
Q ss_pred CCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCCCCccCCc----cccCC-CCCcEEEccCCCCCCCCCc---hh
Q 009835 116 DLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGTSLLKVPR----PFQYL-SGLVYLHLENSNLFSLGSL---QW 184 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~~~~~~p~----~~~~l-~~L~~L~L~~n~l~~~~~~---~~ 184 (524)
.+..|.|.+|.+.... +...+...+.|+.|++++|.+.+.--. .+... ..|++|++..|.++..... +.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777788888776652 224455677788888888877632211 22232 4567777777776643322 33
Q ss_pred cCCCCCCcEEEccCCCCCCC--CCchHhhh----cccCCCEEEeeCCCCCCCCCC--chhhhcccCc-ccEEEccCCCCC
Q 009835 185 LSHLSSLRHLDLSYINLTKS--SDWFQVVA----KLRSLKTLVLHSCALPPINPS--SIWHFNLSTS-IETLDLSDNNLP 255 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~--~~~~~~l~----~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~-L~~L~L~~n~l~ 255 (524)
+.....++.++++.|.+... ......+. ...++++|++.+|.++...-. ...+... +. +..|++..|.+.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~-~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG-ESLLRELDLASNKLG 246 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc-chhhHHHHHHhcCcc
Confidence 44567778888888877533 11123333 366778888888776622111 0011122 33 556788888774
Q ss_pred CCCCC----chhhhccccccEEEeecccccccc----chhhhcccccceEeecCccccc
Q 009835 256 SSSVY----PWLFNLSRNIQYLNLGFNSLQGSI----PEAFQLMVSLRFLYLTSNELEG 306 (524)
Q Consensus 256 ~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~ 306 (524)
+ ... +.+......++.++++.|.++... ...+..++.++.|.+++|.+..
T Consensus 247 d-~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 D-VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred h-HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 211 122222135678888888877543 3344556678888888887764
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.00056 Score=70.53 Aligned_cols=41 Identities=39% Similarity=0.395 Sum_probs=26.3
Q ss_pred CCCcEEEccCCCCCCCCCc---hhcCCCCCCcEEEccCCCCCCC
Q 009835 164 SGLVYLHLENSNLFSLGSL---QWLSHLSSLRHLDLSYINLTKS 204 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~ 204 (524)
..+..|.|.+|.+...+.. ..+.....|+.|++++|.+.+.
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~ 130 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE 130 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH
Confidence 3477788888877654322 2345666777777777777643
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.011 Score=32.53 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=8.4
Q ss_pred CcEEEccCCcCccccchhh
Q 009835 371 LKILVLGENRLNGTIDKSL 389 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~ 389 (524)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.021 Score=31.36 Aligned_cols=18 Identities=44% Similarity=0.768 Sum_probs=8.3
Q ss_pred cceEeecCcccccccchhh
Q 009835 294 LRFLYLTSNELEGGIPKFF 312 (524)
Q Consensus 294 L~~L~Ls~n~l~~~~p~~l 312 (524)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.15 Score=25.91 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=3.1
Q ss_pred CcEEEccCCc
Q 009835 371 LKILVLGENR 380 (524)
Q Consensus 371 L~~L~Ls~N~ 380 (524)
|++|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
|
... |
| >PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.22 Score=42.04 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=25.2
Q ss_pred ceehhhHHHHHHHHHHHHhhhhcccccchhHHHHhhcccceeEeeehhHHHhh
Q 009835 467 GFYVGLILGFFVGFWGVCGTLMLNRSWRHGYYNFLTGMKDWLYVTAALNIAKL 519 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (524)
.+++++++|+.+++++++++++|+++.|++--.|++--...++..++-+..+|
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGkvvtay~~n~~~~~ 101 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGKVVTAYRSNKLTKW 101 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCcEEEEEcCchHHHH
Confidence 36666666665544444333333222222223466655555555444444443
|
The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway []. |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.19 Score=28.07 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=8.4
Q ss_pred CCCCEEEccCCCCCCchhH
Q 009835 316 CSLNRLCLPYNKLSGDLSE 334 (524)
Q Consensus 316 ~~L~~L~Ls~n~l~~~~~~ 334 (524)
++|++|+|++|.+++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4455555555555444333
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.02 E-value=0.2 Score=44.70 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=31.9
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccc-cchhhc-CCCCCCEEEccCC-CCCCchhHHHHh
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG-IPKFFG-KMCSLNRLCLPYN-KLSGDLSEMIQN 338 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~-~l~~L~~L~Ls~n-~l~~~~~~~~~~ 338 (524)
.++.++-++..|..+.-+.+..++.++.|.+.++.-.+. --+-++ -.++|+.|+|++| +|++..-..+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence 455566666555544444555555555555555532211 001111 1245555555555 344433344443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=87.28 E-value=0.58 Score=26.63 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCCC
Q 009835 317 SLNRLCLPYNKLSG 330 (524)
Q Consensus 317 ~L~~L~Ls~n~l~~ 330 (524)
+|++|+|++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=87.28 E-value=0.58 Score=26.63 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCCC
Q 009835 317 SLNRLCLPYNKLSG 330 (524)
Q Consensus 317 ~L~~L~Ls~n~l~~ 330 (524)
+|++|+|++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
|
|
| >PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host [] | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.59 Score=29.16 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=8.4
Q ss_pred eehhhHHHHHHHHHHHHh
Q 009835 468 FYVGLILGFFVGFWGVCG 485 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~ 485 (524)
+++++++|+++.+++++.
T Consensus 8 IIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFY 25 (38)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445554444444433
|
This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain. |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.97 E-value=0.042 Score=49.87 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=62.8
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
...+.||++.|++ ......+.... .+..|+++.|.+. ..|..++....+..+++.+|..+ ..|.+++..+.++++
T Consensus 42 kr~tvld~~s~r~--vn~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 42 KRVTVLDLSSNRL--VNLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ceeeeehhhhhHH--HhhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 6777888888876 33333333333 7888888888887 67888888888888888888887 778888888889988
Q ss_pred EccCCCCC
Q 009835 322 CLPYNKLS 329 (524)
Q Consensus 322 ~Ls~n~l~ 329 (524)
++-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888754
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=86.91 E-value=0.19 Score=28.07 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=7.2
Q ss_pred CCCcEEEccCCcCccc
Q 009835 369 SSLKILVLGENRLNGT 384 (524)
Q Consensus 369 ~~L~~L~Ls~N~l~~~ 384 (524)
++|++|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555443
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.76 E-value=0.081 Score=47.10 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=18.9
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 226 (524)
.++.+|-++..+.... ...+..++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHH--HHHHhccchhhhheecccc
Confidence 4566666666555442 3345555555555555543
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=86.18 E-value=3.4 Score=41.85 Aligned_cols=62 Identities=19% Similarity=0.061 Sum_probs=33.2
Q ss_pred CCCEEEccCCCCCccCCccccC---CCCCcEEEccCCCCCCC--CCchhcCCCCCCcEEEccCCCCC
Q 009835 141 RLRYLNLSCGTSLLKVPRPFQY---LSGLVYLHLENSNLFSL--GSLQWLSHLSSLRHLDLSYINLT 202 (524)
Q Consensus 141 ~L~~L~L~~n~~~~~~p~~~~~---l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~ 202 (524)
.+.+++|+.|.....+|..+.. -..++.++.+...+.-. -..-..+.-++|+..+++.|...
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 4677777777766666654432 23456666665544311 11112334456777777666543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=85.87 E-value=0.75 Score=26.15 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=7.5
Q ss_pred CCCcEEEccCCcCc
Q 009835 369 SSLKILVLGENRLN 382 (524)
Q Consensus 369 ~~L~~L~Ls~N~l~ 382 (524)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=85.87 E-value=0.75 Score=26.15 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=7.5
Q ss_pred CCCcEEEccCCcCc
Q 009835 369 SSLKILVLGENRLN 382 (524)
Q Consensus 369 ~~L~~L~Ls~N~l~ 382 (524)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
|
|
| >PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] | Back alignment and domain information |
|---|
Probab=85.23 E-value=0.43 Score=30.33 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=13.0
Q ss_pred ceehhhHHHHHHHHHHHHhhhhc
Q 009835 467 GFYVGLILGFFVGFWGVCGTLML 489 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~ 489 (524)
.+.+++++.+++++++++.++++
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~ 34 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFF 34 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhhe
Confidence 45666666666655555555543
|
This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis []. |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.76 E-value=0.055 Score=49.12 Aligned_cols=35 Identities=6% Similarity=-0.174 Sum_probs=16.9
Q ss_pred ccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCc
Q 009835 348 LEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 382 (524)
+..+++..|..+..+-+++..+.++.+++..|.+.
T Consensus 90 ~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 90 TVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 34444444444433334555555555555555543
|
|
| >PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains | Back alignment and domain information |
|---|
Probab=80.28 E-value=0.62 Score=41.64 Aligned_cols=29 Identities=3% Similarity=0.140 Sum_probs=19.8
Q ss_pred hcceehhhHHHHHHHHHHHHhhhhccccc
Q 009835 465 TLGFYVGLILGFFVGFWGVCGTLMLNRSW 493 (524)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
...|++++++|++++++++++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 44577788888877777776666665444
|
They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 524 | ||||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-12 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-08 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-08 |
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 9e-75
Identities = 108/396 (27%), Positives = 178/396 (44%), Gaps = 38/396 (9%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 95
+ E L++FK L D+ +L W + ++ C + GV C + V ++L
Sbjct: 9 SLYREIHQLISFKDVLPDK-NLLPDW---SSNKNPCTFDGVTCRD--DKVTSIDLS---- 58
Query: 96 ENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK 155
+ V +S +LL L L L LSN+H GS + F + L L+LS +
Sbjct: 59 -SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGF-KCSASLTSLDLSRNSLSGP 115
Query: 156 VPRPFQ--YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS-SDWFQVVA 212
V SGL +L++ ++ L G + L+SL LDLS +++ + + +
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175
Query: 213 KLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQY 272
LK L + + + ++E LD+S NN S+ P+L + S +Q+
Sbjct: 176 GCGELKHLAISGNKI----SGDVDVSRC-VNLEFLDVSSNNF--STGIPFLGDCS-ALQH 227
Query: 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL 332
L++ N L G A L+ L ++SN+ G IP + SL L L NK +G++
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 333 SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTI-DKSLS 390
+ LSG C +L G+ L GN G +P G S L+ L L N +G + +L
Sbjct: 286 PD---FLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 391 QLLKLESLSLGRNSFTGKIP-----LGTQLQSFNAS 421
++ L+ L L N F+G++P L L + + S
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 3e-51
Identities = 92/350 (26%), Positives = 139/350 (39%), Gaps = 44/350 (12%)
Query: 103 LKGTIS-PALLKLHDLRHLDLSNNHFGGSPLPEF--IGSLSRLRYLNLSCGTSLLKVPRP 159
L LKL+ L LDLS N G+ + + L++L +S + +
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS--GNKISGDVD 195
Query: 160 FQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS-SDWFQVVAKLRSLK 218
L +L + ++N + +L S+L+HLD+S L+ S + LK
Sbjct: 196 VSRCVNLEFLDVSSNNFS--TGIPFLGDCSALQHLDISGNKLSGDFSRAI---STCTELK 250
Query: 219 TLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN 278
L + S I L S++ L L++N + + +L + L+L N
Sbjct: 251 LLNISSNQFV----GPIPPLPLK-SLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGN 304
Query: 279 SLQGSIPEAFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGDLSEMIQ 337
G++P F L L L+SN G +P KM L L L +N+ SG+L E +
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 338 NLS---------------------GGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILV 375
NLS N+L+ + L+ N TG +P L S L L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 376 LGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL----GTQLQSFNAS 421
L N L+GTI SL L KL L L N G+IP L++
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-47
Identities = 92/362 (25%), Positives = 150/362 (41%), Gaps = 46/362 (12%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYL-----NLSCGTSLLKVP 157
L GTI +L L LR L L N G +P+ + + L L +L+ G ++P
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLT-G----EIP 483
Query: 158 RPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKS-SDWFQVVAKLR 215
+ L ++ L N N + G + +W+ L +L L LS + + + R
Sbjct: 484 SGLSNCTNLNWISLSN-NRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAEL---GDCR 538
Query: 216 SLKTLVLHSCALPPIN------PSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR- 268
SL L L++ N P+++ F S ++ N + + Y ++ N
Sbjct: 539 SLIWLDLNT------NLFNGTIPAAM--FKQS-----GKIAANFI-AGKRYVYIKNDGMK 584
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
+ QG E + + +TS G F S+ L + YN L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 329 SGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDK 387
SG + + I ++ L + L NDI+G +PD +G L IL L N+L+G I +
Sbjct: 645 SGYIPKEIGSMP------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 388 SLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPNKCPDEESTPLP 447
++S L L + L N+ +G IP Q ++F + + NP LCG PLP P
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758
Query: 448 GR 449
+
Sbjct: 759 HQ 760
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 2e-42
Identities = 100/316 (31%), Positives = 142/316 (44%), Gaps = 29/316 (9%)
Query: 103 LKGTISPALL-KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLL-KVPRP- 159
G I L L LDLS NHF G +P F GS S L L LS + ++P
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYG-AVPPFFGSCSLLESLALS-SNNFSGELPMDT 338
Query: 160 FQYLSGLVYLHLENSNLFSLGSL-QWLSHLS-SLRHLDLSYINLTKS--SDWFQVVAKLR 215
+ GL L L N FS G L + L++LS SL LDLS N + + Q
Sbjct: 339 LLKMRGLKVLDLSF-NEFS-GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKN 394
Query: 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275
+L+ L L + P ++ N S + +L LS N L S ++ L +LS ++ L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLS--NCS-ELVSLHLSFNYL-SGTIPSSLGSLS-KLRDLKL 449
Query: 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEM 335
N L+G IP+ + +L L L N+L G IP +LN + L N+L+G++ +
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 336 IQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLK 394
I L +L + L N +G +P LG SL L L N NGTI ++ +
Sbjct: 510 IGRLE------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-- 561
Query: 395 LESLSLGRNSFTGKIP 410
S + N GK
Sbjct: 562 --SGKIAANFIAGKRY 575
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 4e-59
Identities = 99/407 (24%), Positives = 161/407 (39%), Gaps = 102/407 (25%)
Query: 35 RCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCC--KWRGVRCSNKTGHVKVLNLRR 92
C ++++ALL K+ L + LSSW DCC W GV C T +V
Sbjct: 2 LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRV----- 52
Query: 93 SDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGS-PLPEFIGSLSRLRYLNLSCGT 151
+LDLS + P+P + +L L +L +
Sbjct: 53 -------------------------NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG--- 84
Query: 152 SLLKVPRPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSDWFQV 210
N G + ++ L+ L +L +++ N++
Sbjct: 85 ---------------------GINNLV-GPIPPAIAKLTQLHYLYITHTNVSG------- 115
Query: 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270
I P + + ++ TLD S N L S ++ P + +L N+
Sbjct: 116 ------------------AI-PDFLS--QI-KTLVTLDFSYNAL-SGTLPPSISSLP-NL 151
Query: 271 QYLNLGFNSLQGSIPEAFQLMVSL-RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
+ N + G+IP+++ L + ++ N L G IP F + +L + L N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSL 389
GD S + + + + + L N + L +G +L L L NR+ GT+ + L
Sbjct: 211 GDASVLFGSDK------NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 390 SQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPN 436
+QL L SL++ N+ G+IP G LQ F+ S YA N LCG PLP
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 3e-39
Identities = 69/329 (20%), Positives = 123/329 (37%), Gaps = 30/329 (9%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP--- 159
++ + +K +L LDLS+N + L L L+ L LS + +
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLS-NNKIQALKSEELD 166
Query: 160 FQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS-SDWFQVVAKLRSLK 218
S L L L ++ + + L L L+ + L S ++ + S++
Sbjct: 167 IFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
Query: 219 TLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN 278
L L + L + ++ T++ LDLS NNL + V F ++Y L +N
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKW-TNLTMLDLSYNNL--NVVGNDSFAWLPQLEYFFLEYN 282
Query: 279 SLQGSIPEAFQLMVSLRFLYLTSN---------ELEGGIPKFFGKMCSLNRLCLPYNKLS 329
++Q + + ++R+L L + L F + L L + N +
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF-----SSLKILVLGENRLNGT 384
G S M L +L+ + L + + F S L IL L +N+++
Sbjct: 343 GIKSNMFTGLI------NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396
Query: 385 IDKSLSQLLKLESLSLGRNSFTGKIPLGT 413
+ S L LE L LG N ++
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-38
Identities = 75/324 (23%), Positives = 126/324 (38%), Gaps = 30/324 (9%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 161
L+ + + L LD+ N PE L L+ LNL L ++ F
Sbjct: 37 LRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQ-HNELSQLSDKTFA 94
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
+ + L LHL ++++ + + +L LDLS+ L+ + +L +L+ L+
Sbjct: 95 FCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELL 151
Query: 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
L + + + + F S S++ L+LS N + P F+ + L L L
Sbjct: 152 LSNNKIQALKSEELDIFANS-SLKKLELSSNQI--KEFSPGCFHAIGRLFGLFLNNVQLG 208
Query: 282 GSIPEAFQL---MVSLRFLYLTSNELEGGIPKFFGKMC--SLNRLCLPYNKLSGDLSEMI 336
S+ E L S+R L L++++L F + +L L L YN L+ ++
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 337 QNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGEN---------RLNGTID 386
L LE LE N+I L G +++ L L + L D
Sbjct: 269 AWLP------QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322
Query: 387 KSLSQLLKLESLSLGRNSFTGKIP 410
S L LE L++ N G
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKS 346
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-36
Identities = 63/321 (19%), Positives = 120/321 (37%), Gaps = 18/321 (5%)
Query: 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLHLE 172
++ L+L++N P S+L L++ ++ K+ P Q L L L+L+
Sbjct: 24 PTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQ 81
Query: 173 NSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINP 232
++ L L S + + ++L L L ++ K + K ++L TL L L
Sbjct: 82 HNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKL 138
Query: 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMV 292
+ +++ L LS+N + + + +++ L L N ++ P F +
Sbjct: 139 GT---QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 293 SLRFLYLTSNELEGGIPKFFG---KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349
L L+L + +L + + S+ L L ++LS G +L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST----TSNTTFLGLKWTNLT 251
Query: 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408
+ L N++ D L+ L N + SL L + L+L R+
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311
Query: 409 IPLGTQLQSFNASVYAGNPEL 429
I L L + + L
Sbjct: 312 ISL-ASLPKIDDFSFQWLKCL 331
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-35
Identities = 74/330 (22%), Positives = 127/330 (38%), Gaps = 34/330 (10%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS--------CGTSLL 154
L + + L L + L N+ + L +RYLNL SL
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 155 KV-PRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 213
K+ FQ+L L +L++E++++ + S + L +L++L LS + + +
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377
Query: 214 L--RSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQ 271
L L L L + I + +E LDL N + + + NI
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWL---GHLEVLDLGLNEI-GQELTGQEWRGLENIF 433
Query: 272 YLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG--GIPKFFGKMCSLNRLCLPYNKLS 329
+ L +N +F L+ SL+ L L L+ P F + +L L L N ++
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDIT---------GPLPDLGGFSSLKILVLGENR 380
+M++ L LE + L+ N++ GP+ L G S L IL L N
Sbjct: 494 NINDDMLEGLE------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547
Query: 381 LNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
+ + L +L+ + LG N+
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-35
Identities = 85/368 (23%), Positives = 132/368 (35%), Gaps = 32/368 (8%)
Query: 86 KVLNLRRSDDENS-RGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRY 144
+ LNL+RS + S L + L L HL++ +N G L L+Y
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKY 357
Query: 145 LNLS-CGTSLLKVP-RPFQYL--SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN 200
L+LS TSL + F L S L L+L + + + S S L L LDL
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNE 416
Query: 201 LTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVY 260
+ + Q L ++ + L + +S F L S++ L L L +
Sbjct: 417 IGQELT-GQEWRGLENIFEIYLSYNKYLQLTRNS---FALVPSLQRLMLRRVALKNVDSS 472
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE--------GGIPKFF 312
P F RN+ L+L N++ + + + L L L N L GG F
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSL 371
+ L+ L L N E+ ++L L+ + L N++ SL
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLF------ELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 372 KILVLGENRLNGTIDKSLSQLLK-LESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPEL- 429
K L L +N + K + L L + N F ++ + PEL
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELS 646
Query: 430 ----CGLP 433
C P
Sbjct: 647 SHYLCNTP 654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 3e-35
Identities = 71/323 (21%), Positives = 115/323 (35%), Gaps = 23/323 (7%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEF-IGSLSRLRYLNLSCGTSLLKV-PRPF 160
L T ++L +L+ L LSNN E I + S L+ L LS + + P F
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS-SNQIKEFSPGCF 191
Query: 161 QYLSGLVYLHLENSNL--FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 218
+ L L L N L L +S+R+L LS L+ +S+ + K +L
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251
Query: 219 TLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLF---------NLSRN 269
L L L + S +E L NN+ ++ NL R+
Sbjct: 252 MLDLSYNNLNVVGNDSFAWL---PQLEYFFLEYNNI--QHLFSHSLHGLFNVRYLNLKRS 306
Query: 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
++ SL +FQ + L L + N++ G F + +L L L + S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKS 388
L + + L + L N I+ D L++L LG N + +
Sbjct: 367 --LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424
Query: 389 -LSQLLKLESLSLGRNSFTGKIP 410
L + + L N +
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTR 447
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 4e-35
Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 22/300 (7%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHLENSN 175
D S+ P + + LNL+ L ++P F S L L + +
Sbjct: 6 HEVADCSHLKLTQVPD----DLPTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSI 235
+ L + L L+ L+L + L++ SD + A +L L L S ++ I +
Sbjct: 61 ISKLEP-ELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPF 117
Query: 236 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM--VS 293
++ TLDLS N L SS+ L N+Q L L N +Q E + S
Sbjct: 118 VKQ---KNLITLDLSHNGL-SSTKLGTQVQLE-NLQELLLSNNKIQALKSEELDIFANSS 172
Query: 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCL 353
L+ L L+SN+++ P F + L L L +L L+E L S+ + L
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNLSL 229
Query: 354 EGNDITGPLPDLGG---FSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
+ ++ +++L +L L N LN + S + L +LE L N+
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-27
Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 19/235 (8%)
Query: 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDL 249
S D S++ LT+ D ++ L L L + ++ + + + +LD+
Sbjct: 5 SHEVADCSHLKLTQVPDDL-----PTNITVLNLTHNQLRRLPAANFTRY---SQLTSLDV 56
Query: 250 SDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP 309
N + S + P L ++ LNL N L + F +L L+L SN ++
Sbjct: 57 GFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114
Query: 310 KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF- 368
F K +L L L +N LS L +L+ + L N I +
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLE------NLQELLLSNNKIQALKSEELDIF 168
Query: 369 --SSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNAS 421
SSLK L L N++ + +L L L + L+ N S
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 6e-22
Identities = 41/171 (23%), Positives = 59/171 (34%), Gaps = 12/171 (7%)
Query: 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLT 300
+ S E D S L +L NI LNL N L+ F L L +
Sbjct: 3 TVSHEVADCSHLKLTQVP-----DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57
Query: 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360
N + P+ K+ L L L +N+LS + + +L + L N I
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT------NLTELHLMSNSIQK 111
Query: 361 PLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
+ +L L L N L+ T + QL L+ L L N
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 2e-37
Identities = 57/418 (13%), Positives = 116/418 (27%), Gaps = 70/418 (16%)
Query: 38 DEEREALLTFKQSLVDEYGVLSSWGKDND-------------------KRDCCKWR---G 75
D L+ + +Y L + ++ W G
Sbjct: 15 DAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPG 74
Query: 76 VRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEF 135
V ++ G V L+L G + A+ +L +L L L ++ +
Sbjct: 75 VSLNS-NGRVTGLSLEGFG--------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125
Query: 136 IGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLE----NSNLFSLGSLQWLSHLSSL 191
+S + Y + L NS+ +
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185
Query: 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW---HFNLSTSIETLD 248
+ N+T S +L L+ + + N W + + +T D
Sbjct: 186 TQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242
Query: 249 LSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNEL---- 304
L +NL +++ + + +P + + ++ + + N
Sbjct: 243 LKWDNL-------------KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 305 ----EGGIPKFFGKMCSLNRLCLPYNKL-SGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT 359
+ + + + YN L + + +Q + L + N +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK------KLGMLECLYNQLE 343
Query: 360 GPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQS 417
G LP G L L L N++ ++E+LS N IP +S
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKS 400
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 5e-37
Identities = 64/386 (16%), Positives = 118/386 (30%), Gaps = 66/386 (17%)
Query: 105 GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC--------GTSLLKV 156
T L DL +++ N LP F+ +L ++ +N++C +
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Query: 157 PRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS 216
+ +++ +NL + L + L L+ Y L F
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF---GSEIK 354
Query: 217 LKTLVLHSCAL---PP---INPSSIWHFNLS----------------TSIETLDLSDNNL 254
L +L L + P + + + + + + +D S N +
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414
Query: 255 PS------SSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-- 306
S + P F N+ +NL N + E F L + L N L
Sbjct: 415 GSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473
Query: 307 -----GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGP 361
+ F L + L +NKL+ + + T+ L G+ L N +
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSKF 528
Query: 362 LPDLGGFSSLKILVLGE------NRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP--LGT 413
S+LK + NR + ++ L L +G N + +
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP 587
Query: 414 QLQSFNASVYAGNPELCGLPLPNKCP 439
+ + NP + L CP
Sbjct: 588 NISVLDIK---DNP-NISIDLSYVCP 609
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-35
Identities = 52/311 (16%), Positives = 103/311 (33%), Gaps = 45/311 (14%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
+S A+++L LR + N+ F + E Y + L
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICE-AWENENSEYAQQ-----YKTEDLKWDNLKD 250
Query: 166 LVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHS 224
L + + N L L +L L ++ ++++ S
Sbjct: 251 LTDVEVYNCPN--LTKLPTFLKALPEMQLINVACNRGI---------------------S 287
Query: 225 CALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSI 284
+ ++ + I+ + + NNL + V L + + L +N L+G +
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEGKL 346
Query: 285 PEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344
P F + L L L N++ F G + L +NKL I N+ +
Sbjct: 347 PA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKS 400
Query: 345 MNSLEGVCLEGNDITGPL--------PDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLE 396
++ + + N+I P ++ + L N+++ + S L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 397 SLSLGRNSFTG 407
S++L N T
Sbjct: 461 SINLMGNMLTE 471
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 50/319 (15%), Positives = 107/319 (33%), Gaps = 37/319 (11%)
Query: 105 GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYL 163
+ +L K+ L L+ N G P F GS +L LNL+ + ++P +
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKL-PAF-GSEIKLASLNLA-YNQITEIPANFCGFT 376
Query: 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWF-----QVVAKLRSLK 218
+ L ++ L + ++ +S + +D SY + K ++
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436
Query: 219 TLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPS------SSVYPWLFNLSRNIQY 272
++ L + + F+ + + +++L N L N +
Sbjct: 437 SINLSNNQISKFPKEL---FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT-YLLTS 492
Query: 273 LNLGFNSLQGSIPEAFQL--MVSLRFLYLTSNELEGGIPKFFGKMCSL------NRLCLP 324
++L FN L + + F+ + L + L+ N P +L N+
Sbjct: 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT 384
N+ + E I SL + + NDI + ++ +L + +N
Sbjct: 551 GNRTLREWPEGITLCP------SLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISI 602
Query: 385 IDKSLSQLLKLESLSLGRN 403
+ ++ L +
Sbjct: 603 DLSYVCPYIEAGMYMLFYD 621
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 3e-20
Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 28/235 (11%)
Query: 113 KLHDLRHLDLSNNHFGG------SPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSG 165
+ + +D S N G PL + +NLS + K P+ F S
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NNQISKFPKELFSTGSP 458
Query: 166 LVYLHLENSNLFSL------GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT 219
L ++L + L + + + L +DL + LTK SD F+ L L
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA-TTLPYLVG 517
Query: 220 LVLHSCAL---PP--INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274
+ L + P +N S++ F + D N + ++ L
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIR---NQRDAQGNRT-LREWPEGITLCP-SLTQLQ 572
Query: 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
+G N ++ + E + ++ L + N + L Y+K
Sbjct: 573 IGSNDIR-KVNEK--ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 5e-37
Identities = 62/389 (15%), Positives = 118/389 (30%), Gaps = 70/389 (17%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC---------GTSL 153
+ L DL ++L N LP+F+ L L+ LN++C
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADW 537
Query: 154 LKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 213
++ + ++ +NL + L + L LD + + +
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH----LEAFGT 593
Query: 214 LRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNN---LPSSSVYPWLFNLSR-- 268
L L L + I P + +E L S N +P+ ++ +
Sbjct: 594 NVKLTDLKLDYNQIEEI-PEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650
Query: 269 -----------------------NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305
N + L +N +Q E F + + L++N +
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710
Query: 306 -------GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI 358
+ L + L +NKL+ + + T+ L + + N
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCF 765
Query: 359 TGPLPDLGGFSSLKILVLGE------NRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP-- 410
+ S LK + NR+ ++ L L +G N K+
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEK 824
Query: 411 LGTQLQSFNASVYAGNPELCGLPLPNKCP 439
L QL + + NP + + + CP
Sbjct: 825 LTPQLYILDIA---DNP-NISIDVTSVCP 849
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 6e-30
Identities = 52/386 (13%), Positives = 112/386 (29%), Gaps = 55/386 (14%)
Query: 46 TFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKG 105
+ ++ +W + + GV N G V L+L KG
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFG--------AKG 337
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
+ A+ +L +L+ L + S L+ + Y
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
L L + ++ + S + D NLT ++ +
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT---------NRITFI-------- 440
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP 285
+I T ++ + +++ N++ + + N + +
Sbjct: 441 ------SKAIQRL---TKLQIIYFANSPFTY-------DNIAVDWEDANSDYAKQYENEE 484
Query: 286 EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG--DLSEMIQNLSGG- 342
++ + L + L + +P F + L L + N+ L L+
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544
Query: 343 CTMNSLEGVCLEGNDITG--PLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400
T ++ + N++ L L +L N++ ++ + +KL L L
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602
Query: 401 GRNSFTGKIP-----LGTQLQSFNAS 421
N IP Q++ S
Sbjct: 603 DYNQIEE-IPEDFCAFTDQVEGLGFS 627
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 4e-29
Identities = 45/339 (13%), Positives = 104/339 (30%), Gaps = 53/339 (15%)
Query: 105 GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 164
++ ++ + N+ P + + +L L+ + ++ F
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV--HNKVRHLEAFGTNV 595
Query: 165 GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLH- 223
L L L+ + + + + + + L S+ L + F + + ++
Sbjct: 596 KLTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFNA-KSVYVMGSVDFSY 653
Query: 224 ----------SCALPPINPSSIWHFNLS---------------TSIETLDLSDNNLPS-- 256
SC++ + LS + I T+ LS+N + S
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713
Query: 257 ---SSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL--MVSLRFLYLTSNELEGGIPKF 311
+ + + ++L FN L S+ + F+ + L + ++ N P
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771
Query: 312 FGKMCSLNRLCLPY------NKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDL 365
L + + N++ I SL + + NDI + +
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP------SLIQLQIGSNDIRK-VDE- 823
Query: 366 GGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNS 404
L IL + +N S+ ++ L +
Sbjct: 824 KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 1e-17
Identities = 37/234 (15%), Positives = 68/234 (29%), Gaps = 24/234 (10%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIG----SLSRLRYLNLSCGTSLLKVPRP-FQYLSG 165
++ + +D S N G + LS + K P F S
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS-YNEIQKFPTELFATGSP 698
Query: 166 LVYLHLENSNLFSL------GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT 219
+ + L N+ + S+ + L +DL + LT SD F+ L L
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-TTLPYLSN 757
Query: 220 LVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPS----SSVYPWLFNLSRNIQYLNL 275
+ + P+ N + ++ + +P ++ L +
Sbjct: 758 MDVSYNCFSSF-PTQP--LNS-SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813
Query: 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
G N ++ + E L L L + N L Y+K
Sbjct: 814 GSNDIR-KVDEK--LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 5e-13
Identities = 26/190 (13%), Positives = 53/190 (27%), Gaps = 21/190 (11%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFG------GSPLPEFIGSLSRLRYLNLSCGTSLLKV 156
++ + + + LSNN P + L ++L L +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR-FNKLTSL 743
Query: 157 PRPFQY--LSGLVYLHLENSNL----FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQV 210
F+ L L + + + + L D + + W
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ--WPTG 801
Query: 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270
+ SL L + S + ++ L+ + LD++DN S V + +
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDEK------LTPQLYILDIADNPNISIDVTSVCPYIEAGM 855
Query: 271 QYLNLGFNSL 280
L
Sbjct: 856 YVLLYDKTQD 865
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 5e-34
Identities = 65/309 (21%), Positives = 108/309 (34%), Gaps = 17/309 (5%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 161
S L+ LDL+ H S LP + LS L+ L LS + +
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLS-ANKFENLCQISAS 322
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
L +L ++ + L +L +LR LDLS+ ++ S + L L++L
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
L + + F +E LDL+ L F ++ LNL + L
Sbjct: 383 LSYNEPLSLKTEA---FKECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 282 GSIPEAFQLMVSLRFLYLTSNELEGGI---PKFFGKMCSLNRLCLPYNKLSGDLSEMIQN 338
S + F + +L+ L L N G + L L L + LS +
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
Query: 339 LSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESL 398
L + V L N +T + L L N ++ + L L + ++
Sbjct: 499 LK------MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTI 552
Query: 399 SLGRNSFTG 407
+L +N
Sbjct: 553 NLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-33
Identities = 60/316 (18%), Positives = 110/316 (34%), Gaps = 20/316 (6%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQ 161
L + +L +L LDL+ + S RL L L+ L+ +
Sbjct: 45 LPTIQNTTFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLT-ANPLIFMAETALS 102
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
L +L + + S+ L + +L L L +++ LK L
Sbjct: 103 GPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKLKVLD 159
Query: 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
+ A+ ++ + + +L+L+ N++ + + P F+ + Q LN G
Sbjct: 160 FQNNAIHYLSKEDMSSLQ-QATNLSLNLNGNDI--AGIEPGAFDSA-VFQSLNFGGTQNL 215
Query: 282 GSIPE--AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLN--RLCLPYNKLSGDLSEMIQ 337
I + + SL + E P F +C ++ + L + S
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275
Query: 338 NLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLES 397
S L+ + L ++ L G S+LK LVL N+ S S L
Sbjct: 276 CFS------GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329
Query: 398 LSLGRNSFTGKIPLGT 413
LS+ N+ ++ G
Sbjct: 330 LSIKGNTKRLELGTGC 345
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 6e-33
Identities = 60/336 (17%), Positives = 108/336 (32%), Gaps = 40/336 (11%)
Query: 105 GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGS-LSRLRYLNLSC--GTSLLKVPRPFQ 161
I P + L+ S + L +
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
+ ++L+ F++ S S L+ LDL+ +L++ L +LK LV
Sbjct: 252 CEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHLSELPSGLV---GLSTLKKLV 307
Query: 222 LHSCALPPINPSSIWHF------NLS----------------TSIETLDLSDNNLPSSSV 259
L + + S +F ++ ++ LDLS +++ +S
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367
Query: 260 YPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSL 318
++Q LNL +N EAF+ L L L L+ + F + L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427
Query: 319 NRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG----PLPDLGGFSSLKIL 374
L L ++ L ++ L +L+ + L+GN L L+IL
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLP------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481
Query: 375 VLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
VL L+ + + L + + L N T
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 6e-33
Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 24/328 (7%)
Query: 108 SPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV 167
L + ++L ++F S L+ L+L+ T L ++P LS L
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLT-ATHLSELPSGLVGLSTLK 304
Query: 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLSY--INLTKSSDWFQVVAKLRSLKTLVLHSC 225
L L + +L + S+ SL HL + L + + L +L+ L L
Sbjct: 305 KLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLE---NLENLRELDLSHD 360
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP 285
+ + ++ NL + +++L+LS N S+ F ++ L+L F L+
Sbjct: 361 DIETSDCCNLQLRNL-SHLQSLNLSYNEP--LSLKTEAFKECPQLELLDLAFTRLKVKDA 417
Query: 286 E-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344
+ FQ + L+ L L+ + L+ + F + +L L L N + +L
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--- 474
Query: 345 MNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403
+ LE + L D++ + + L NRL + ++LS L + L+L N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASN 533
Query: 404 SFTGKIP----LGTQLQSFNASVYAGNP 427
+ +P + +Q ++ N NP
Sbjct: 534 HISIILPSLLPILSQQRTINLR---QNP 558
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-27
Identities = 59/307 (19%), Positives = 100/307 (32%), Gaps = 18/307 (5%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS--CGTSLLKVPRPF 160
+ + L HL + N + +L LR L+LS +
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 161 QYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220
+ LS L L+L + SL + L LDL++ L D L LK L
Sbjct: 373 RNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLK-VKDAQSPFQNLHLLKVL 430
Query: 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW-LFNLSRNIQYLNLGFNS 279
L L + F+ +++ L+L N+ P ++ ++ L L F
Sbjct: 431 NLSHSLLDISSEQL---FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 280 LQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNL 339
L AF + + + L+ N L + + + L L N +S L ++ L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546
Query: 340 SGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399
S + L N + F L+ +L T D L +
Sbjct: 547 S------QQRTINLRQNPLDC-TCSNIYF--LEWYKENMQKLEDTEDTLCENPPLLRGVR 597
Query: 400 LGRNSFT 406
L + +
Sbjct: 598 LSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 3e-20
Identities = 35/229 (15%), Positives = 65/229 (28%), Gaps = 18/229 (7%)
Query: 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSD 251
+ + + L + S + L LP I ++ ++ LDL+
Sbjct: 15 KTYNCENLGLNEIPGTL-----PNSTECLEFSFNVLPTIQNTTFSRL---INLTFLDLTR 66
Query: 252 NNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKF 311
+ ++ F + L L N L A +L+ L+ +
Sbjct: 67 CQI--YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124
Query: 312 FGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSS 370
+L L L N +S L+ + + N I D+
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTE------KLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 371 LKILVLGENRLN-GTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSF 418
L L N + I+ +SL+ G I G + +
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 2e-19
Identities = 44/221 (19%), Positives = 74/221 (33%), Gaps = 13/221 (5%)
Query: 188 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247
+S L+ S+ L + ++L +L L L C + I+ + F ++TL
Sbjct: 32 PNSTECLEFSFNVLPTIQN--TTFSRLINLTFLDLTRCQIYWIHEDT---FQSQHRLDTL 86
Query: 248 DLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG 307
L+ N L + + + +++L + +L LYL SN +
Sbjct: 87 VLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144
Query: 308 IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGG 367
L L N + E + +L T SL L GNDI G P
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-QATNLSLN---LNGNDIAGIEPGAFD 200
Query: 368 FSSLKILVLGENRLNGTIDKSLS--QLLKLESLSLGRNSFT 406
+ + L G + I K L + L +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 35/315 (11%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
+ L +L +L+L+ N + +L +L L + + + Q L+ L
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGT--NKITDISALQNLTNLRE 114
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L+L N+ + L ++L+ + L+L + + + L L + +
Sbjct: 115 LYLNEDNISDISPL---ANLTKMYSLNLGANHNLSDLSPL---SNMTGLNYLTVTESKV- 167
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
+ T + +L L+ N + S L +L+ ++ Y N + P
Sbjct: 168 ----KDVTPIANLTDLYSLSLNYNQIEDISP---LASLT-SLHYFTAYVNQITDITP--V 217
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
M L L + +N++ P + L L + N+ I +++ + L
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ--------ISDINAVKDLTKL 267
Query: 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408
+ + + N I+ + L S L L L N+L + + L L +L L +N T
Sbjct: 268 KMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 409 IPLG--TQLQSFNAS 421
PL +++ S + +
Sbjct: 327 RPLASLSKMDSADFA 341
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 66/313 (21%), Positives = 123/313 (39%), Gaps = 37/313 (11%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLH 170
L + L L + L ++ G + + +YL+ L YL+
Sbjct: 18 DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVA-GEKVASIQ-GIEYLTNLEYLN 72
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI 230
L + + + LS+L L +L + +T + L +L+ L L+ +
Sbjct: 73 LNGNQ---ITDISPLSNLVKLTNLYIGTNKITD----ISALQNLTNLRELYLNEDNI--- 122
Query: 231 NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290
S I T + +L+L N+ S L N++ + YL + + ++ P
Sbjct: 123 --SDISPLANLTKMYSLNLGANHN--LSDLSPLSNMT-GLNYLTVTESKVKDVTP--IAN 175
Query: 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350
+ L L L N++E P + SL+ N+++ I ++ M L
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-----ITPVAN---MTRLNS 225
Query: 351 VCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
+ + N IT L L S L L +G N+++ I+ ++ L KL+ L++G N +
Sbjct: 226 LKIGNNKITD-LSPLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISDISV 282
Query: 411 LG--TQLQSFNAS 421
L +QL S +
Sbjct: 283 LNNLSQLNSLFLN 295
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 62/276 (22%), Positives = 111/276 (40%), Gaps = 31/276 (11%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
T AL L +LR L L+ ++ + +L+++ LNL L P ++G
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLG-ANHNLSDLSPLSNMTG 156
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
L YL + S + + +++L+ L L L+Y + S +A L SL +
Sbjct: 157 LNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVN 209
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP 285
+ + I T + +L + +N + S L NLS + +L +G N +
Sbjct: 210 QI-----TDITPVANMTRLNSLKIGNNKITDLSP---LANLS-QLTWLEIGTNQISD--I 258
Query: 286 EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345
A + + L+ L + SN++ + LN L L N+L + E+I L+
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT----- 311
Query: 346 NSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRL 381
+L + L N IT + L S + +
Sbjct: 312 -NLTTLFLSQNHITD-IRPLASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 7e-23
Identities = 52/259 (20%), Positives = 95/259 (36%), Gaps = 32/259 (12%)
Query: 165 GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHS 224
G L + + + + L+ L ++T +L S+ LV+
Sbjct: 1 GAATLATLPAPI---NQIFPDADLAEGIRAVLQKASVTDVVT----QEELESITKLVVAG 53
Query: 225 CALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSI 284
+ +SI T++E L+L+ N + S L NL + L +G N + +
Sbjct: 54 EKV-----ASIQGIEYLTNLEYLNLNGNQITDISP---LSNLV-KLTNLYIGTNKI--TD 102
Query: 285 PEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344
A Q + +LR LYL + + P + + L L N DLS + N++
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMT---- 155
Query: 345 MNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNS 404
L + + + + + + + L L L N++ L+ L L + N
Sbjct: 156 --GLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQ 210
Query: 405 FTGKIPLG--TQLQSFNAS 421
T P+ T+L S
Sbjct: 211 ITDITPVANMTRLNSLKIG 229
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 2e-21
Identities = 49/251 (19%), Positives = 102/251 (40%), Gaps = 30/251 (11%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
L L + L+L NH + +++ L YL ++ + + V P L+ L
Sbjct: 126 SPLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVT-ESKVKDVT-PIANLTDLYS 181
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L L + + + L + L+SL + +T VA + L +L + + +
Sbjct: 182 LSLNYNQIEDISPL---ASLTSLHYFTAYVNQITD----ITPVANMTRLNSLKIGNNKIT 234
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
++P + NL + + L++ N + S + +L+ ++ LN+G N + S
Sbjct: 235 DLSPLA----NL-SQLTWLEIGTNQI---SDINAVKDLT-KLKMLNVGSNQI--SDISVL 283
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
+ L L+L +N+L + G + +L L L N ++ I+ L+ ++ +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-----IRPLAS---LSKM 335
Query: 349 EGVCLEGNDIT 359
+ I
Sbjct: 336 DSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 21/200 (10%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
+ L DL L L+ N + SL+ L Y + + P ++
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYV--NQITDITPVANMTR 222
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
L L + N+ + L L ++LS L L++ ++ V L LK L + S
Sbjct: 223 LNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQISD----INAVKDLTKLKMLNVGSN 275
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP 285
+ S I N + + +L L++N L + + + L+ N+ L L N + P
Sbjct: 276 QI-----SDISVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLT-NLTTLFLSQNHITDIRP 328
Query: 286 EAFQLMVSLRFLYLTSNELE 305
+ + + ++
Sbjct: 329 --LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
A+ L L+ L++ +N + +LS+L L L+ + L+ L
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK 203
L L +++ + L + LS + D + + K
Sbjct: 316 LFLSQNHITDIRPL---ASLSKMDSADFANQVIKK 347
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-31
Identities = 62/379 (16%), Positives = 105/379 (27%), Gaps = 74/379 (19%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRY--------------------- 144
I + L L L N + + + +L+ L
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 145 -----------LNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLS------- 186
L+ F L+ + + L ++ L +
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSI 314
Query: 187 -----------HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSI 235
L L+ L L+ + S L SL L L AL S
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTLTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCCSY 370
Query: 236 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP-EAFQLMVSL 294
S+ LDLS N + F +Q+L+ ++L+ AF + L
Sbjct: 371 SDLGT-NSLRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426
Query: 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL-SEMIQNLSGGCTMNSLEGVCL 353
+L ++ + F + SLN L + N + S + N + +L + L
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT------NLTFLDL 480
Query: 354 EGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP-- 410
+ L++L + N L +QL L +L N
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Query: 411 --LGTQLQSFNASVYAGNP 427
L FN + N
Sbjct: 541 QHFPKSLAFFNLT---NNS 556
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 52/301 (17%), Positives = 92/301 (30%), Gaps = 22/301 (7%)
Query: 108 SPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV 167
L ++ + L+ L + + + L++ L + P L L
Sbjct: 278 IVKFHCLANVSAMSLAGVSI--KYLEDVPK-HFKWQSLSII-RCQLKQFP--TLDLPFLK 331
Query: 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCAL 227
L L + L SL +LDLS L+ S SL+ L L
Sbjct: 332 SLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA 287
++ + F ++ LD + L F + YL++ + + +
Sbjct: 389 IIMSAN----FMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443
Query: 288 FQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346
F + SL L + N + F +L L L +L + L
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH------ 497
Query: 347 SLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
L+ + + N++ SL L NR+ + L +L NS
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Query: 406 T 406
Sbjct: 558 A 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 54/299 (18%), Positives = 108/299 (36%), Gaps = 17/299 (5%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHLENS 174
+++DLS N + S L++L+LS + + + L L L L +
Sbjct: 33 STKNIDLSFNPLKILK-SYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234
+ S S S L+SL +L L + +L +LK L + + +
Sbjct: 91 PIQSF-SPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPA 147
Query: 235 IWHFNLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMV 292
F+ T++ +DLS N + + + +L + L++ N + +AFQ +
Sbjct: 148 Y--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI- 204
Query: 293 SLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSG--DLSEMIQNLSGGCTMNSLE 349
L L L N I K + L+ L + +L ++ G +++
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264
Query: 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407
L + +++ + L + + + + K +SLS+ R
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQ 321
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 9e-28
Identities = 58/319 (18%), Positives = 105/319 (32%), Gaps = 30/319 (9%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQ 161
++ A LH L +L L+ N P L+ L L T L + P
Sbjct: 68 IETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAV-ETKLASLESFPIG 125
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLR-SLKT 219
L L L++ ++ + S + S+L++L H+DLSY + + + Q + + +
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Query: 220 LVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL---- 275
L + + I + L L L N SS++ + L
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKL----HELTLRGNFN-SSNIMKTCLQNLAGLHVHRLILGE 240
Query: 276 --GFNSLQGSIPEAFQLMVSLRF--LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331
+L+ P + + + LT F + +++ + L
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS---- 296
Query: 332 LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQ 391
I+ L + + + + P L LK L L N+ +I
Sbjct: 297 ----IKYLEDVPKHFKWQSLSIIRCQLKQ-FPTL-DLPFLKSLTLTMNKG--SISFKKVA 348
Query: 392 LLKLESLSLGRNSFTGKIP 410
L L L L RN+ +
Sbjct: 349 LPSLSYLDLSRNALSFSGC 367
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 61/315 (19%), Positives = 105/315 (33%), Gaps = 28/315 (8%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQ 161
LK S + +L+ LDLS + L L L L+ G + P F
Sbjct: 44 LKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILT-GNPIQSFSPGSFS 101
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
L+ L L + L SL S + L +L+ L++++ + S + L +L +
Sbjct: 102 GLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVD 159
Query: 222 LHSCALPPINPSSIWHF-NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSL 280
L + I + + +LD+S N + + F + L L N
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFIQDQAFQGI-KLHELTLRGNFN 216
Query: 281 QGSIPE-AFQLMVSLRFLYLTSNELEGGI------PKFFGKMCSLNRLCL--PYNKLSGD 331
+I + Q + L L E + P +C + Y D
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276
Query: 332 LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQ 391
L+ ++ + L G I L D+ + L + +L L
Sbjct: 277 DIVKFHCLA------NVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329
Query: 392 LLKLESLSLGRNSFT 406
L+SL+L N +
Sbjct: 330 ---LKSLTLTMNKGS 341
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-26
Identities = 52/334 (15%), Positives = 99/334 (29%), Gaps = 34/334 (10%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 161
L S + +L L+ L++++N LP + +L+ L +++LS + + Q
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS-YNYIQTITVNDLQ 174
Query: 162 YLSGL----VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLR 215
+L + L + + + + L L L + + Q +A L
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQD--QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232
Query: 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275
+ ++ + + + S F+ N+ ++L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292
Query: 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD---- 331
S+ E + L + +L+ P + L L L NK S
Sbjct: 293 AGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNKGSISFKKV 347
Query: 332 --------------LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLG 377
LS NSL + L N + G L+ L
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407
Query: 378 ENRLNGTIDKS-LSQLLKLESLSLGRNSFTGKIP 410
+ L + S L KL L + +
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 32/228 (14%)
Query: 104 KGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQY 162
KG+IS + L L +LDLS N S + + LR+L+LS + + F
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS-FNGAIIMSANFMG 397
Query: 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 222
L L +L ++S L + L L +LD+SY N D
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-------------- 443
Query: 223 HSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG 282
F TS+ TL ++ N+ + +F + N+ +L+L L+
Sbjct: 444 ---------------FLGLTSLNTLKMAGNSF-KDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 283 SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG 330
F + L+ L ++ N L + ++ SL+ L +N++
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 9e-21
Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 15/248 (6%)
Query: 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLD 248
SS +++DLS+ L + L+ L L C + I + ++ + L
Sbjct: 32 SSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKA---WHGLHHLSNLI 86
Query: 249 LSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-G 307
L+ N + S P F+ +++ L L +++L+ L + N +
Sbjct: 87 LTGNPI--QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144
Query: 308 IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGG 367
+P +F + +L + L YN + +Q L + + N I
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE--NPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 368 FSSLKILVLGENRLNGTIDKSLSQLLK-LESLSLGRNSFTGKIPLGTQLQSFNASVYAGN 426
L L L N + I K+ Q L L L F L+ F S+ G
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD----ERNLEIFEPSIMEGL 258
Query: 427 PELCGLPL 434
++
Sbjct: 259 CDVTIDEF 266
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 9e-18
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 14/174 (8%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
++ +S + +DLS N L + + F+ +Q+L+L ++ +A+ + L L
Sbjct: 29 DIPSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI 358
LT N ++ P F + SL L KL+ S I L +L+ + + N I
Sbjct: 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFI 140
Query: 359 TG-PLPD-LGGFSSLKILVLGENRLNGTIDKSLSQL----LKLESLSLGRNSFT 406
LP ++L + L N + L L SL + N
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-17
Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 19/172 (11%)
Query: 241 STSIETLDLSDNNL---PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFL 297
T D L P ++ + + ++L FN L+ +F L++L
Sbjct: 10 VVPNITYQCMDQKLSKVPD--------DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
L+ E+E K + + L+ L L N + L+ SLE +
Sbjct: 62 DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT------SLENLVAVETK 115
Query: 358 ITGPLPD-LGGFSSLKILVLGENRLNG-TIDKSLSQLLKLESLSLGRNSFTG 407
+ +G +LK L + N ++ + S L L + L N
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQ 161
K L L L L ++ N F + L + + L +L+LS L ++ F
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS-KCQLEQISWGVFD 494
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
L L L++ ++NL L + L SL LD S+ + S Q +SL
Sbjct: 495 TLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIETSKGILQ--HFPKSLAFFN 551
Query: 222 LHS 224
L +
Sbjct: 552 LTN 554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 161
L+ LH L+ L++S+N+ L L L+ S +
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCS-FNRIETSKGILQH 542
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN 200
+ L + +L N+++ + Q + L +
Sbjct: 543 FPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-31
Identities = 62/325 (19%), Positives = 108/325 (33%), Gaps = 65/325 (20%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGS-PLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161
KG + + + L L LDLS N + + L+YL+LS ++ + F
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFL 393
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
L L +L ++SNL + L +L +LD+S+ +
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------------------ 435
Query: 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
+S+E L ++ N+ + P +F RN+ +L+L L+
Sbjct: 436 --------AFNGIFNGL---SSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 282 GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341
P AF + SL+ L ++ N + + SL L N + + +Q+
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-- 541
Query: 342 GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKS--LSQLLKLESLS 399
SSL L L +N T + L + L
Sbjct: 542 --------------------------PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575
Query: 400 LGRNSFTGKIPL---GTQLQSFNAS 421
+ P G + S N +
Sbjct: 576 VEVERMECATPSDKQGMPVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-30
Identities = 67/328 (20%), Positives = 118/328 (35%), Gaps = 21/328 (6%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 161
L+ S + +L+ LDLS SLS L L L+ G + + F
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILT-GNPIQSLALGAFS 97
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
LS L L +NL SL + + HL +L+ L++++ + S + + L +L+ L
Sbjct: 98 GLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLD 155
Query: 222 LHSCALPPINPSSIWHF-NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSL 280
L S + I + + + +LDLS N + + + P F + L L N
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEI-RLHKLTLRNNFD 212
Query: 281 QGSIPE-AFQLMVSLRFLYLTSNE------LEGGIPKFFGKMCSLNRLCLPYNKLSGDLS 333
++ + Q + L L E LE +C+L L L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 334 EMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLL 393
++I + + ++ L I + D + L L + L L
Sbjct: 273 DIIDLFNC---LTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 394 KLESLSLGRNSFTGKIPLGTQLQSFNAS 421
+L S + ++ L L+ + S
Sbjct: 329 RLTFTSNKGGNAFSEVDL-PSLEFLDLS 355
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 63/332 (18%), Positives = 111/332 (33%), Gaps = 35/332 (10%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQ 161
++ A L L L L+ N L F LS L+ L T+L + P
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAV-ETNLASLENFPIG 121
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSS-DWFQVVAKLRSLK-T 219
+L L L++ ++ + S ++ S+L++L HLDLS + +V+ ++ L +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 220 LVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL---- 275
L L + I P + L L L +N S +V ++ L
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRL----HKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 276 --GFNSLQGSIPEAFQLMVSLRFLYLTSNELE---GGIPKFFGKMCSLNRLCLPYNKLSG 330
+L+ A + + +L L+ I F + +++ L +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 331 -------------DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLG 377
+L + SL+ + N SL+ L L
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLS 355
Query: 378 ENRLN--GTIDKSLSQLLKLESLSLGRNSFTG 407
N L+ G +S L+ L L N
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 52/334 (15%), Positives = 100/334 (29%), Gaps = 33/334 (9%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 161
L + + L L+ L++++N LPE+ +L+ L +L+LS + + +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLR 170
Query: 162 YLSGLVYLHLE---NSNLFSLGSLQWLSHLSSLRHLDLSY--INLTKSSDWFQVVAKLRS 216
L + L+L + N + + L L L +L Q L
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ---GLAG 226
Query: 217 LKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL----PSSSVYPWLFNLSRNIQY 272
L+ L + + + L + + L LFN N+
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG-- 330
+L +++ ++ + L L + + + L
Sbjct: 287 FSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344
Query: 331 --------DLSEMIQNLSGGCT-----MNSLEGVCLEGNDITGPLPDLGGFSSLKILVLG 377
DLS + G C+ SL+ + L N + + G L+ L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 378 ENRLNGTIDKS-LSQLLKLESLSLGRNSFTGKIP 410
+ L + S L L L +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-24
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 14/178 (7%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
NL S + LDLS N L + + F +Q L+L +Q A+Q + L L
Sbjct: 25 NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI 358
LT N ++ F + SL +L L+ + I +L +L+ + + N I
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLI 136
Query: 359 TG-PLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLE----SLSLGRNSFTGKIP 410
LP+ ++L+ L L N++ L L ++ SL L N P
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 69/354 (19%), Positives = 118/354 (33%), Gaps = 41/354 (11%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK---VPRPFQY 162
I P K L L L NN + + I L+ L L G +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 163 LSGLVYLHLENSNL-----FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 217
L GL L +E L + + + L+++ L + + + D F + L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHL 309
Query: 218 KTLVLHSCALPPINPSSIWHFNLS-------------TSIETLDLSDNNLPSSSVYPWLF 264
+ + P + S+ + S+E LDLS N L
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCL 323
+ +++YL+L FN + ++ F + L L + L+ F + +L L +
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRL 381
+ + + LS SLE + + GN +L L L + +L
Sbjct: 429 SHTHTRVAFNGIFNGLS------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 382 NGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-----TQLQSFNASVYAGNPELC 430
+ + L L+ L++ N +P G T LQ NP C
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLH---TNPWDC 532
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-25
Identities = 56/280 (20%), Positives = 94/280 (33%), Gaps = 22/280 (7%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
I L ++ L + + L +N G P L L
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSL 327
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226
L ++ + S L SL LDLS L+ Q SLK L L
Sbjct: 328 KRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE 286
+ ++ + F +E LD +NL +F RN+ YL++ + +
Sbjct: 385 VITMSSN----FLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 287 AFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345
F + SL L + N + F ++ +L L L +L +LS
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----- 494
Query: 346 NSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGENRLNGT 384
SL+ + + N + P +SL+ + L N + +
Sbjct: 495 -SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 63/297 (21%), Positives = 108/297 (36%), Gaps = 20/297 (6%)
Query: 108 SPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGL 166
S + +L+ LDLS SLS L L L+ G + + F LS L
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSL 102
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226
L +NL SL + + HL +L+ L++++ NL +S + + L +L+ L L S
Sbjct: 103 QKLVAVETNLASLEN-FPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 227 LPPINPSSIWHF-NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP 285
+ I + + + +LDLS N + + + P F + L L N ++
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEI-RLHKLTLRNNFDSLNVM 217
Query: 286 E-AFQLMVSLRFLYLT------SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQN 338
+ Q + L L LE +C+L L L ++I
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 339 LSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKL 395
+ + ++ L I + D + L L + L L +L
Sbjct: 278 FNC---LTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 66/298 (22%), Positives = 108/298 (36%), Gaps = 18/298 (6%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHLENS 174
++LDLS N F S L+ L+LS + + +Q LS L L L +
Sbjct: 29 STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234
+ SL +L S LSSL+ L NL + + L++LK L + +
Sbjct: 87 PIQSL-ALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 235 IWHFNLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMV 292
F+ T++E LDLS N + S + L + L+L N + P AF+ +
Sbjct: 144 Y--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200
Query: 293 SLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGD--LSEMIQNLSGGCTMNSLE 349
L L L +N + K + L L + + L + ++ G ++E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 350 GVCLEGNDITGPLPD--LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
L D +++ L + D S + L L F
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 6e-22
Identities = 60/324 (18%), Positives = 106/324 (32%), Gaps = 35/324 (10%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 168
A L L L L+ N LS L+ L T+L + P +L L
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKE 128
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLR-SLKTLVLHSCA 226
L++ ++ + S ++ S+L++L HLDLS + +V+ ++ +L L
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL------GFNSL 280
+ I P + L L L +N S +V ++ L +L
Sbjct: 189 MNFIQPGAFKEIRL----HKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 281 QGSIPEAFQLMVSLRFLYLTSNELEG---GIPKFFGKMCSLNRLCLPYNKLSG------- 330
+ A + + +L L+ I F + +++ L +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 331 ------DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLN-- 382
+L + SL+ + N SL+ L L N L+
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFK 362
Query: 383 GTIDKSLSQLLKLESLSLGRNSFT 406
G +S L+ L L N
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI 386
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 59/306 (19%), Positives = 103/306 (33%), Gaps = 34/306 (11%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS-CGTSLLKVPRPFQYLSGLVYLHLENSN 175
LDLS N + RL L L SL + Q L+GL L
Sbjct: 179 NLSLDLSLNPMNF--IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 176 LFSLGSLQWL--SHLSSLRHLDLSYINLTK----SSDWFQVVAKLRSLKTLVLHSCALPP 229
+ G+L+ S L L +L + L D + L ++ + L S +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 230 INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ 289
+ S + +E ++ P+ + ++++ L N + +
Sbjct: 297 VKDFS--YNFGWQHLELVNCKFGQFPTLKL--------KSLKRLTFTSNKGGNAF--SEV 344
Query: 290 LMVSLRFLYLTSNELE--GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347
+ SL FL L+ N L G + SL L L +N + +S L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE------Q 397
Query: 348 LEGVCLEGNDITGPLPDLGGF---SSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNS 404
LE + + +++ + + F +L L + + + L LE L + NS
Sbjct: 398 LEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 405 FTGKIP 410
F
Sbjct: 457 FQENFL 462
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 5e-19
Identities = 58/355 (16%), Positives = 111/355 (31%), Gaps = 47/355 (13%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 161
L + + L L+ L++++N LPE+ +L+ L +L+LS + + +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLR 170
Query: 162 YLSGL----VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 217
L + + L L + + + + L L L N + + L L
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFI-QPGAFKEI-RLHKLTLRN-NFDSLNVMKTCIQGLAGL 227
Query: 218 KTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL----PSSSVYPWLFNLSRNIQYL 273
+ L + + + L + + L LFN N+
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 274 NLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLS 333
+L +++ ++ + L L + + P K+ SL RL NK S
Sbjct: 288 SLVSVTIERVKDFSY--NFGWQHLELVNCKFG-QFP--TLKLKSLKRLTFTSNKGGNAFS 342
Query: 334 EM------IQNLSG------------GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILV 375
E+ +LS SL+ + L N + + G L+ L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 376 LGENRLNGTIDKS-LSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPEL 429
+ L + S L L L + + ++ G L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHT----------HTRVAFNGIFNGLSSL 447
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Query: 104 KGTISPALLKLHDLRHLDLSNNHFGGSPLPEF-IGSLSRLRYLNLSCGTSLLKVPRPFQY 162
KG + + + L L LDLS N + L+YL+LS ++ + F
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLG 394
Query: 163 LSGLVYLHLENSNLFS---------LGSLQWL---------------SHLSSLRHLDLSY 198
L L +L ++SNL L +L +L + LSSL L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 199 INLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSS 258
+ ++ + +LR+L L L C L ++P++ FN +S++ L+++ N L S
Sbjct: 455 NSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTA---FNSLSSLQVLNMASNQL--KS 508
Query: 259 VYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290
V +F+ ++Q + L N S P L
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 8e-17
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 15/181 (8%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
NL S + LDLS N L + + F +Q L+L +Q A+Q + L L
Sbjct: 25 NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI 358
LT N ++ F + SL +L L+ + I +L +L+ + + N I
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLI 136
Query: 359 T-GPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLE----SLSLGRNSFTGKIPLG 412
LP+ ++L+ L L N++ L L ++ SL L N I G
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195
Query: 413 T 413
Sbjct: 196 A 196
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 65/324 (20%), Positives = 124/324 (38%), Gaps = 37/324 (11%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
T L L +L L+LS+N + L+ L+ L+ + +P L+
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQ---VTDLKPLANLTT 178
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
L L + ++ + + L + L++L L + ++ + + L +L L L+
Sbjct: 179 LERLDISSNKVSDISVL---AKLTNLESLIATNNQISDITP----LGILTNLDELSLNGN 231
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP 285
L I T++ LDL++N + S L L+ + L LG N + P
Sbjct: 232 QL-----KDIGTLASLTNLTDLDLANNQI---SNLAPLSGLT-KLTELKLGANQISNISP 282
Query: 286 EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345
+ +L L L N+LE + +L L L +N +S I +S +
Sbjct: 283 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-----ISPVSS---L 330
Query: 346 NSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
L+ + N ++ + L +++ L G N+++ L+ L ++ L L ++
Sbjct: 331 TKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAW 387
Query: 406 TGKIPLGTQLQSFNASVYAGNPEL 429
T S +V L
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGAL 411
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 5e-28
Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 39/315 (12%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
L L +L L L NN + +L+ L L LS ++ + L+ L
Sbjct: 106 TPLANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELS--SNTISDISALSGLTSLQQ 160
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L N L++L++L LD+S ++ V+AKL +L++L+ + +
Sbjct: 161 LSFGNQVTDLKP----LANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQI- 211
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
S I + T+++ L L+ N L L +L+ N+ L+L N + P
Sbjct: 212 ----SDITPLGILTNLDELSLNGNQLKDIGT---LASLT-NLTDLDLANNQISNLAP--L 261
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
+ L L L +N++ P + +L L L N+ ++++S + +L
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ--------LEDISPISNLKNL 311
Query: 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408
+ L N+I+ + + + L+ L N+++ SL+ L + LS G N +
Sbjct: 312 TYLTLYFNNISD-ISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368
Query: 409 IPLG--TQLQSFNAS 421
PL T++ +
Sbjct: 369 TPLANLTRITQLGLN 383
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 63/315 (20%), Positives = 120/315 (38%), Gaps = 39/315 (12%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
L + L + + L ++ L +K +YL+ L
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADR--LGIKSIDGVEYLNNLTQ 72
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
++ N+ L + L +L+ L + ++ + + +A L +L L L + +
Sbjct: 73 INFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQI- 124
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
+ I T++ L+LS N + S L L+ ++Q L+ G +
Sbjct: 125 ----TDIDPLKNLTNLNRLELSSNTI---SDISALSGLT-SLQQLSFGNQVTD---LKPL 173
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
+ +L L ++SN++ K+ +L L N++S I L + +L
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD-----ITPLGI---LTNL 223
Query: 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408
+ + L GN + + L ++L L L N+++ LS L KL L LG N +
Sbjct: 224 DELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280
Query: 409 IPLG--TQLQSFNAS 421
PL T L + +
Sbjct: 281 SPLAGLTALTNLELN 295
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 9e-20
Identities = 58/302 (19%), Positives = 107/302 (35%), Gaps = 33/302 (10%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
L KL +L L +NN +G L+ L L+L+ G L + L+ L
Sbjct: 193 SVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLN-GNQLKDIG-TLASLTNLTD 247
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L L N+ + +L L S L+ L L L ++ S +A L +L L L+ L
Sbjct: 248 LDLANNQISNLAPL---SGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQL- 299
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
I + ++ L L NN+ S + +L+ +Q L N + S +
Sbjct: 300 ----EDISPISNLKNLTYLTLYFNNISDISP---VSSLT-KLQRLFFYNNKV--SDVSSL 349
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
+ ++ +L N++ P + + +L L + N+ S+
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV-------SI 400
Query: 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408
+ S + N + T + S + ++ G +F+G
Sbjct: 401 PNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVS-YTFSQPVTIGKGTTTFSGT 459
Query: 409 IP 410
+
Sbjct: 460 VT 461
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 63/299 (21%), Positives = 106/299 (35%), Gaps = 20/299 (6%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 168
L L+L+ N F L LR L L L +P F LS L
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR-SNRLKLIPLGVFTGLSNLTK 108
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCAL 227
L + + + L L +L+ L++ +L S F + L SL+ L L C L
Sbjct: 109 LDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAF---SGLNSLEQLTLEKCNL 164
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA 287
I ++ H + L L N+ +++ + F ++ L + ++
Sbjct: 165 TSIPTEALSHL---HGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 288 FQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347
++L L +T L + L L L YN +S M+ L
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL------R 273
Query: 348 LEGVCLEGNDITG-PLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
L+ + L G + G + L++L + N+L + + LE+L L N
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-26
Identities = 67/322 (20%), Positives = 113/322 (35%), Gaps = 30/322 (9%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLHLENS 174
+ R LDL N EF L L L+ + V P F L L L L ++
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPS 233
L + + LS+L LD+S + FQ L +LK+L + L I+
Sbjct: 91 RLKLIPLGV-FTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHR 146
Query: 234 SIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS 293
+ S+E L L NL +S+ + + L L ++ +F+ +
Sbjct: 147 AFSGL---NSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Query: 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCL 353
L+ L ++ + +L L + + L+ +++L L + L
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV------YLRFLNL 255
Query: 354 EGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412
N I+ L L+ + L +L + L L L++ N
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN--------- 306
Query: 413 TQLQSFNASVYAGNPELCGLPL 434
QL + SV+ L L L
Sbjct: 307 -QLTTLEESVFHSVGNLETLIL 327
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 34/224 (15%)
Query: 106 TISPALLK-LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYL 163
+ + + L++L+ L++ +N F G L+ L L L +L +P +L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG-LNSLEQLTLE-KCNLTSIPTEALSHL 175
Query: 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK--SSDWFQ------------ 209
GL+ L L + N+ ++ L L+ L++S+ + +
Sbjct: 176 HGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 210 --------VVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYP 261
V L L+ L L + I S + ++ + L L + V P
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM---LHELLRLQEIQLVGGQL--AVVEP 289
Query: 262 WLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNEL 304
+ F ++ LN+ N L ++ E F + +L L L SN L
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 169
AL LH L L L + + F L RL+ L +S L + Y L L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALP 228
+ + NL ++ L + HL LR L+LSY ++ +L L+ + L L
Sbjct: 230 SITHCNLTAVPYLA-VRHLVYLRFLNLSYNPISTIEGSMLH---ELLRLQEIQLVGGQLA 285
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
+ P + F + L++S N L +++ +F+ N++ L L N L
Sbjct: 286 VVEPYA---FRGLNYLRVLNVSGNQL--TTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 9/169 (5%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
+ T LDL N + ++ F +++ L L N + P AF + +LR L
Sbjct: 29 GIPTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI 358
L SN L+ F + +L +L + NK+ L M Q+L +L+ + + ND+
Sbjct: 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY------NLKSLEVGDNDL 140
Query: 359 TG-PLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
G +SL+ L L + L ++LS L L L L +
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 13/174 (7%)
Query: 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLT 300
S + +V P + + L+LG N ++ + F L L L
Sbjct: 10 SAQDRAVLCHRKRF--VAV-PE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360
N + P F + +L L L N+L + LS +L + + N I
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS------NLTKLDISENKIVI 118
Query: 361 PLPDL-GGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT 413
L + +LK L +G+N L ++ S L LE L+L + + T IP
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 55/278 (19%), Positives = 104/278 (37%), Gaps = 32/278 (11%)
Query: 132 LPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189
+ E + +R + ++ L Q + L L + L + S L+ +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPLSQI-SAADLAPFT 58
Query: 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDL 249
L L+LS L ++ D + L +L+TL L++ + + SIETL
Sbjct: 59 KLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVG--------PSIETLHA 106
Query: 250 SDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GI 308
++NN+ S + + + + L N + +++L L NE++
Sbjct: 107 ANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 309 PKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF 368
+ +L L L YN + ++ G L+ + L N + P+
Sbjct: 162 AELAASSDTLEHLNLQYNFIY--------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA 213
Query: 369 SSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
+ + + L N+L I+K+L LE L N F
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-25
Identities = 54/304 (17%), Positives = 111/304 (36%), Gaps = 28/304 (9%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162
LK ++ +++ LDLS N + ++L LNLS ++L +
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSS--NVLYETLDLES 78
Query: 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 222
LS L L L N+ +Q L S+ L + N+++ S ++ + K + L
Sbjct: 79 LSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYL 127
Query: 223 HSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG 282
+ + + + ++ LDL N + + + L S +++LNL +N +
Sbjct: 128 ANNKITMLRDLDEGCR---SRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIY- 182
Query: 283 SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGG 342
+ L+ L L+SN+L + F + + L NKL + + ++
Sbjct: 183 DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-- 237
Query: 343 CTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402
+LE L GN + ++ + + + ++ + G
Sbjct: 238 ----NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 403 NSFT 406
Sbjct: 294 YCCE 297
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 13/131 (9%)
Query: 283 SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGG 342
+I E Q + +T + L+ + ++ L L N LS + + +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58
Query: 343 CTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402
LE + L N + DL S+L+ L L N + + L +E+L
Sbjct: 59 ----KLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108
Query: 403 NSFTGKIPLGT 413
N+ + ++
Sbjct: 109 NNIS-RVSCSR 118
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 31/195 (15%), Positives = 52/195 (26%), Gaps = 34/195 (17%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 169
+++LDL N E S L +LNL
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ--------------------- 177
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229
N + ++ + L+ LDLS L F + + L + L
Sbjct: 178 ----YN--FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNNKLVL 228
Query: 230 INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ 289
I + S ++E DL N ++ + R L G E
Sbjct: 229 IEKA----LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 290 LMVSLRFLYLTSNEL 304
+ + +L
Sbjct: 285 VPTLGHYGAYCCEDL 299
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-26
Identities = 63/318 (19%), Positives = 113/318 (35%), Gaps = 30/318 (9%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 168
+ L L+ L+L + + + E +L LR L+L + + + FQ L L
Sbjct: 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-SSKIYFLHPDAFQGLFHLFE 101
Query: 169 LHLENSNLFSLG-SLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCAL 227
L L L + +L +L LDLS N +S KL SLK++ S +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWL--FNLSRNI--QYLNLGFN----- 278
+ + ++ L+ N+L S W N RN+ + L++ N
Sbjct: 161 FLVCEHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219
Query: 279 -------SLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMC--SLNRLCLPYNKLS 329
++ S + L + + ++ F + S+ L L + +
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGENRLNGTIDKS 388
S + + L L+ + L N I G +L++L L N L +
Sbjct: 280 SLNSRVFETLK------DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333
Query: 389 LSQLLKLESLSLGRNSFT 406
L K+ + L +N
Sbjct: 334 FYGLPKVAYIDLQKNHIA 351
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 6e-26
Identities = 70/339 (20%), Positives = 121/339 (35%), Gaps = 29/339 (8%)
Query: 103 LKGTISP-ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS--CGTSLLKVPRP 159
TI A L +LR LDL ++ F G L L L L + +
Sbjct: 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGY 118
Query: 160 FQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLK 218
F+ L L L L + + SL L+SL+ +D S + + + + ++L
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-QGKTLS 177
Query: 219 TLVLHSCALPPINPSSIWHFNLS---TSIETLDLSDNNLPS----------SSVYPWLFN 265
L + +L +E LD+S N S +
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 266 LSRNIQYLNLGFNSLQGSIPEAFQLMV--SLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323
L+ +I GF++++ F + S+R L L+ + + F + L L L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGENRLN 382
YNK++ E L +L+ + L N + + G + + L +N +
Sbjct: 298 AYNKINKIADEAFYGLD------NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 383 GTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNAS 421
D++ L KL++L L N+ T I + S
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLS 389
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 56/313 (17%), Positives = 103/313 (32%), Gaps = 28/313 (8%)
Query: 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLHLE 172
L+ L LS N+ F L +L+ L L + L + F+ L L L L
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 173 NSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINP 232
+S ++ L L L L L + L+ + L++L L L + +
Sbjct: 82 SSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM- 291
F S++++D S N + + + + + +L NSL + +
Sbjct: 141 HPS--FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 292 -----VSLRFLYLTSNELEGGIPKFFGK------------MCSLNRLCLPYNKLSGDLSE 334
+ L L ++ N I F + ++ +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 335 MIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL 393
L +S+ + L + LK+L L N++N D++ L
Sbjct: 259 TFAGL----ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314
Query: 394 KLESLSLGRNSFT 406
L+ L+L N
Sbjct: 315 NLQVLNLSYNLLG 327
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-25
Identities = 58/315 (18%), Positives = 108/315 (34%), Gaps = 30/315 (9%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPE-FIGSLSRLRYLNLS-CGTSLLKVPRPFQYLSGLV 167
A L L L L + L + + +L L L+LS L + F L+ L
Sbjct: 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151
Query: 168 YLHLENSNLFSL--GSLQWLSHLSSLRHLDLSYINLTK--SSDWFQVVAKLR--SLKTLV 221
+ ++ +F + L+ L + L L+ +L S DW + + R L+ L
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 222 LHSCALPP---------INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQY 272
+ I+ S + L+ I +N+ + ++++
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL 332
L+L + F+ + L+ L L N++ + F + +L L L YN L
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 333 SEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGENRLNGTIDKSLSQ 391
S L + + L+ N I L+ L L +N L ++
Sbjct: 331 SSNFYGLP------KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHF 379
Query: 392 LLKLESLSLGRNSFT 406
+ + + L N
Sbjct: 380 IPSIPDIFLSGNKLV 394
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-25
Identities = 72/328 (21%), Positives = 120/328 (36%), Gaps = 34/328 (10%)
Query: 89 NLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIG-SLSRLRYLNL 147
N D + + + + +L+ H + ++ F G + S +R+L+L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273
Query: 148 SCGTSLLKV-PRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SS 205
S + + R F+ L L L+L + + + + L +L+ L+LSY L + S
Sbjct: 274 S-HGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYS 331
Query: 206 DWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265
F L + + L + I + ++TLDL DN L + +
Sbjct: 332 SNFY---GLPKVAYIDLQKNHIAIIQDQTFKFL---EKLQTLDLRDNALTT-------IH 378
Query: 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPKFFGKMCSLNRLCLP 324
+I + L N L + ++L+ N LE I F ++ L L L
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILN 434
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG------PLPDLGGFSSLKILVLGE 378
N+ S + + SLE + L N + G S L++L L
Sbjct: 435 QNRFSSCSGDQTPSE-----NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 379 NRLNGTIDKSLSQLLKLESLSLGRNSFT 406
N LN S L L LSL N T
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLT 517
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 5e-20
Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 25/249 (10%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVY 168
A L +L+ L+LS N G L ++ Y++L + + F++L L
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQ-KNHIAIIQDQTFKFLEKLQT 366
Query: 169 LHLENSNLFSLGSLQWLSHLS--------------SLRHLDLSYINLTKSSDWFQVVAKL 214
L L ++ L ++ + + + + + LS L ++ D + ++
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL-ENLDILYFLLRV 425
Query: 215 RSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL---PSSSVYPWLFNLSRNIQ 271
L+ L+L+ + + + S+E L L +N L + + +F ++Q
Sbjct: 426 PHLQILILNQNRFSSCSGDQT--PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483
Query: 272 YLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331
L L N L P F + +LR L L SN L +L L + N+L
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAP 541
Query: 332 LSEMIQNLS 340
++ +LS
Sbjct: 542 NPDVFVSLS 550
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 4e-15
Identities = 44/245 (17%), Positives = 87/245 (35%), Gaps = 36/245 (14%)
Query: 186 SHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHS-CALPPINPSSIWHFNLSTS 243
L++ L LS+ + ++ F L L+ L L S I+ + F +
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFP---FLEQLQLLELGSQYTPLTIDKEA---FRNLPN 74
Query: 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSI--PEAFQLMVSLRFLYLTS 301
+ LDL + + ++P F ++ L L F L ++ F+ + +L L L+
Sbjct: 75 LRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132
Query: 302 NELEG-GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT- 359
N++ + FGK+ SL + N++ ++ L +L L N +
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL----QGKTLSFFSLAANSLYS 188
Query: 360 ------GPLPDLGGFSSLKILVLGENR------------LNGTIDKSLSQLLKLESLSLG 401
G + L+IL + N ++ + SL + G
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248
Query: 402 RNSFT 406
++
Sbjct: 249 FHNIK 253
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 4e-15
Identities = 52/260 (20%), Positives = 88/260 (33%), Gaps = 30/260 (11%)
Query: 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLD 248
R + NLT QV L + + L+L + + SS F ++ L+
Sbjct: 4 FDGRIAFYRFCNLT------QVPQVLNTTERLLLSFNYIRTVTASS---FPFLEQLQLLE 54
Query: 249 LSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGI 308
L ++ F N++ L+LG + + P+AFQ + L L L L +
Sbjct: 55 LGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Query: 309 --PKFFGKMCSLNRLCLPYNKLSG-DLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPD 364
+F + +L RL L N++ L L+ SL+ + N I +
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN------SLKSIDFSSNQIFLVCEHE 167
Query: 365 LGGFS--SLKILVLGENRLNGTIDKSLSQLLK------LESLSLGRNSFTGKIP--LGTQ 414
L +L L N L + + + LE L + N +T I
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227
Query: 415 LQSFNASVYAGNPELCGLPL 434
+ A + G
Sbjct: 228 ISKSQAFSLILAHHIMGAGF 247
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 9e-13
Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 17/185 (9%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC-----GTSLLKVPRPFQYLSG 165
LL++ L+ L L+ N F + L L L F+ LS
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
L L+L ++ L SL SHL++LR L L+ LT S +L+ L +
Sbjct: 482 LQVLYLNHNYLNSL-PPGVFSHLTALRGLSLNSNRLTVLSHNDL----PANLEILDISRN 536
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN-LSRNIQYLNLGFNSLQGSI 284
L NP S+ LD++ N N L+ + +
Sbjct: 537 QLLAPNPDVF------VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590
Query: 285 PEAFQ 289
P++F
Sbjct: 591 PDSFS 595
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 7e-26
Identities = 53/304 (17%), Positives = 109/304 (35%), Gaps = 28/304 (9%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162
LK ++ +++ LDLS N + ++L LNLS L + +
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLS-SNVLYETL-DLES 78
Query: 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 222
LS L L L N+ + L S+ L + N+++ S ++ + K + L
Sbjct: 79 LSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSC-----SRGQGKKNIYL 127
Query: 223 HSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG 282
+ + + + ++ LDL N + + + L S +++LNL +N +
Sbjct: 128 ANNKITMLRDLDEGCR---SRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIY- 182
Query: 283 SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGG 342
+ L+ L L+SN+L + F + + L NKL + + ++
Sbjct: 183 DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-- 237
Query: 343 CTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402
+LE L GN + ++ + + + ++ + G
Sbjct: 238 ----NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 403 NSFT 406
Sbjct: 294 YCCE 297
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 2e-25
Identities = 54/276 (19%), Positives = 105/276 (38%), Gaps = 28/276 (10%)
Query: 132 LPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSL 191
+ E + +R + ++ + + Q + L L + L + + L+ + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKL 60
Query: 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSD 251
L+LS L ++ D + L +L+TL L++ + + SIETL ++
Sbjct: 61 ELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLV--------GPSIETLHAAN 108
Query: 252 NNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPK 310
NN+ S V + + + L N + +++L L NE++ +
Sbjct: 109 NNI--SRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163
Query: 311 FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSS 370
+L L L YN + ++ G L+ + L N + P+ +
Sbjct: 164 LAASSDTLEHLNLQYNFIY--------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215
Query: 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
+ + L N+L I+K+L LE L N F
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 2e-22
Identities = 51/329 (15%), Positives = 116/329 (35%), Gaps = 42/329 (12%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
L L LR LDL+NN+ + + + L+ + ++ +V G
Sbjct: 74 LDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAA-NNNISRV--SCSRGQGKKN 124
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
++L N+ + L L S +++LDL + + ++ ++ A +L+ L L +
Sbjct: 125 IYLANNKITMLRDLD-EGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIY 182
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
+ ++ ++TLDLS N L + + P + + + +++L N L I +A
Sbjct: 183 DVKGQVVF-----AKLKTLDLSSNKL--AFMGPEFQSAA-GVTWISLRNNKLV-LIEKAL 233
Query: 289 QLMVSLRFLYLTSNELEGG-IPKFFGKMCSLNRL------CLPYNKLSGDLSEMIQNLSG 341
+ +L L N G + FF K + + L + +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 342 GC---------------TMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTID 386
C + +G++ + + + + + + ID
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353
Query: 387 KSLSQLLKLESLSLGRNSFTGKIPLGTQL 415
+ + +L + + ++ G +
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRA 382
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 5e-18
Identities = 39/365 (10%), Positives = 84/365 (23%), Gaps = 40/365 (10%)
Query: 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162
+ +++LDL N E S L +LNL
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-------------- 177
Query: 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 222
N + ++ + L+ LDLS L F + + L
Sbjct: 178 -----------YN--FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISL 221
Query: 223 HSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG 282
+ L I + S ++E DL N ++ + R + +++
Sbjct: 222 RNNKLVLIEKA----LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV---QTVAKQTVKK 274
Query: 283 SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGG 342
+ + + + E F ++ +L R G +E ++
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE- 333
Query: 343 CTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401
+ + L + L+ + +L+
Sbjct: 334 -NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392
Query: 402 RNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPNKCPDEESTPLPGRNDGANTLEDEDD 461
+ + L +E+
Sbjct: 393 AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENA 452
Query: 462 QFMTL 466
+ L
Sbjct: 453 RLKKL 457
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 8e-11
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 13/131 (9%)
Query: 283 SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGG 342
+I E Q + +T + L+ + ++ L L N LS + + +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58
Query: 343 CTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402
LE + L N + DL S+L+ L L N + + L +E+L
Sbjct: 59 ----KLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108
Query: 403 NSFTGKIPLGT 413
N+ + ++
Sbjct: 109 NNIS-RVSCSR 118
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 13/224 (5%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGS-LSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
KL L L LS+N + L+YL+LS ++ + F L L +
Sbjct: 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLGLEQLEH 105
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCAL 227
L ++SNL + L +L +LD+S+ + + F L SL+ L + +
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNSF 162
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA 287
I F ++ LDLS L + P FN ++Q LN+ N+
Sbjct: 163 QENFLPDI--FTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 288 FQLMVSLRFLYLTSNELEGGIPK--FFGKMCSLNRLCLPYNKLS 329
++ + SL+ L + N + K SL L L N +
Sbjct: 219 YKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 61/292 (20%), Positives = 94/292 (32%), Gaps = 49/292 (16%)
Query: 147 LSC-GTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSS 205
+ C L VP S L LE++ L SL L+ L L LS L+
Sbjct: 12 IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKG 68
Query: 206 DWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265
Q SLK L L + ++ + F +E LD +NL S + +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN-ELEGGIPKFFGKMCSLNRLCLP 324
L RN+ YL++ + + F + SL L + N E +P F ++ +L L L
Sbjct: 125 L-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT 384
+ ++ LS SSL++L + N
Sbjct: 184 QCQ--------LEQLSPTA---------------------FNSLSSLQVLNMSHNNFFSL 214
Query: 385 IDKSLSQLLKLESLSLGRNSFTGKIP------LGTQLQSFNASVYAGNPELC 430
L L+ L N + L N + N C
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT---QNDFAC 262
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 6e-12
Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 24/179 (13%)
Query: 243 SIETLDLSDNNL---PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYL 299
S + + L P+ + + L L N LQ F + L L L
Sbjct: 8 SGTEIRCNSKGLTSVPT--------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59
Query: 300 TSNELE--GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
+SN L G + SL L L +N + +S L LE + + ++
Sbjct: 60 SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE------QLEHLDFQHSN 112
Query: 358 ITGPLPDLGGFS---SLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT 413
+ + + F +L L + + + L LE L + NSF
Sbjct: 113 LKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-25
Identities = 62/317 (19%), Positives = 115/317 (36%), Gaps = 29/317 (9%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 168
L L++L+L N + + +L+ L+ L + + ++ R F L+ L
Sbjct: 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L ++ +L + Q L + + HL L + L S++ L L L
Sbjct: 153 LEIKALSLRNY-QSQSLKSIRDIHHLTLHLSESAFLLE--IFADILSSVRYLELRDTNLA 209
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW--LFNLSRNIQYLNLGFNSLQG---- 282
S + +S+ ++ L + L S L + + +L G
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269
Query: 283 --SIPEAFQL-----MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEM 335
S + V++R L++ L + + + + R+ + +K+
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329
Query: 336 IQNLSGGCTMNSLEGVCLEGNDIT----GPLPDLGGFSSLKILVLGENRLN--GTIDKSL 389
Q+L SLE + L N + G + SL+ LVL +N L + L
Sbjct: 330 SQHLK------SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 390 SQLLKLESLSLGRNSFT 406
L L SL + RN+F
Sbjct: 384 LTLKNLTSLDISRNTFH 400
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 50/311 (16%), Positives = 100/311 (32%), Gaps = 22/311 (7%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVY 168
L +L+ L L ++ + SL L +L+LS L + F LS L Y
Sbjct: 45 DLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKY 102
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L+L + +LG +L++L+ L + + A L SL L + + +L
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLR 161
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
S+ I L L + + + ++ +++YL L +L
Sbjct: 162 NYQSQSLKSI---RDIHHLTLHLSES--AFLLEIFADILSSVRYLELRDTNLARFQFSPL 216
Query: 289 QLMVSLRFLYLTSNELE-------GGIPKFFGKMCSLNRLC---LPYNKLSGDLSEMIQN 338
+ + + + K + L+ + N L
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276
Query: 339 LSGGCTMN--SLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKL 395
+S + ++ + + + L +K + + +++ L L
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336
Query: 396 ESLSLGRNSFT 406
E L L N
Sbjct: 337 EFLDLSENLMV 347
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 57/307 (18%), Positives = 110/307 (35%), Gaps = 26/307 (8%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS-CGTSLLKVPRPFQYLSGLVYLHLENS 174
++ LDLS N + + + L+ L L + ++ F L L +L L ++
Sbjct: 27 AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDN 84
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL-HSCALPPINPS 233
+L SL S W LSSL++L+L + L +L+TL + + I
Sbjct: 85 HLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 234 SIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS 293
F TS+ L++ +L + R+I +L L + + ++ S
Sbjct: 143 D---FAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197
Query: 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG------------ 341
+R+L L L + + + S E L
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 342 --GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399
CT+N L +D+ L + +++ L + + L + S L K++ ++
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKV-ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 400 LGRNSFT 406
+ +
Sbjct: 317 VENSKVF 323
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-23
Identities = 64/330 (19%), Positives = 122/330 (36%), Gaps = 29/330 (8%)
Query: 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSP-LPEFIGSLSRLRY 144
+ L LR ++ + + L + +K R L++ F L +I LS + +
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258
Query: 145 LNLSCGTSLLKVPRPFQYLSG--------LVYLHLENSNLFSLGSLQWLSHLSSLRHLDL 196
+ + P +S + LH+ LF S S L ++ + +
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITV 317
Query: 197 SYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLP 255
+ + Q L+SL+ L L + + S++TL LS N+L
Sbjct: 318 ENSKVFLVPCSFSQ---HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
Query: 256 SSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM 315
S + +N+ L++ N+ +P++ Q +RFL L+S +
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV---KTCIP 430
Query: 316 CSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILV 375
+L L + N L + S + L+ + + N + LPD F L ++
Sbjct: 431 QTLEVLDVSNNNLD--------SFSLF--LPRLQELYISRNKLKT-LPDASLFPVLLVMK 479
Query: 376 LGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
+ N+L D +L L+ + L N +
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-19
Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 27/320 (8%)
Query: 120 LDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENSNLFS 178
D + F P G + ++ L+LS + + + + L L L++S + +
Sbjct: 10 CDGRSRSFTSIP----SGLTAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 179 LGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWH 237
+ L SL HLDLS +L+ SS WF L SLK L L + +S+
Sbjct: 65 IEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFG---PLSSLKYLNLMGNPYQTLGVTSL-- 118
Query: 238 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFL 297
F T+++TL + + S + F ++ L + SL+ ++ + + + L
Sbjct: 119 FPNLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG--DLSEMIQNLSGGCTMNSLEGVCLEG 355
L +E + F + S+ L L L+ + +S + G L
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 356 NDITGPLPDLGGFSSLKILVLGENRLNG------TIDKSLSQLLKLESLSLGRNSFTGKI 409
L L L + + LNG + +S+L K+E++++ R
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP--- 294
Query: 410 PLGTQLQSFNASVYAGNPEL 429
L ++VY+ ++
Sbjct: 295 --QFYLFYDLSTVYSLLEKV 312
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 4e-19
Identities = 41/311 (13%), Positives = 99/311 (31%), Gaps = 51/311 (16%)
Query: 76 VRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEF 135
+R + V+ + + + + ++ +R L + +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL-STV 305
Query: 136 IGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHLENSNLFSL--GSLQWLSHLSSLR 192
L +++ + + + + VP Q+L L +L L + + + SL+
Sbjct: 306 YSLLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 193 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDN 252
L LS +L +++ L++L +L + P+ S + L+LS
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS----CQWPEKMRFLNLSST 420
Query: 253 NLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFF 312
+ + + ++ L++ N+L S + L+ LY++ N+
Sbjct: 421 GIRVVK-----TCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNK--------- 462
Query: 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSL 371
++ L L + + N + +SL
Sbjct: 463 -----------------------LKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499
Query: 372 KILVLGENRLN 382
+ + L N +
Sbjct: 500 QKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 59/342 (17%), Positives = 114/342 (33%), Gaps = 48/342 (14%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIG--SLSRLRYLNLSCGT----SLLKVPRPFQYL 163
L +R+L+L + + S ++ L S ++ + +Y+
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250
Query: 164 SGLVYLHLENSNLFSLGSLQWLS----------HLSSLRHLDLSYINLTKSSDWFQVVAK 213
L + ++ L LG ++R L + L V +
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST--VYSL 308
Query: 214 LRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW-LFNLSRNIQY 272
L +K + + + + + S S+E LDLS+N + + ++Q
Sbjct: 309 LEKVKRITVENSKVFLVPCSF---SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365
Query: 273 LNLGFNSLQ--GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG 330
L L N L+ E + +L L ++ N +P + L L +
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR- 423
Query: 331 DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLS 390
+++ C +LE + + N++ L L+ L + N+L T+ + S
Sbjct: 424 ----VVKT----CIPQTLEVLDVSNNNLDSFSLFL---PRLQELYISRNKLK-TLPDA-S 470
Query: 391 QLLKLESLSLGRNSFTGKIPLG-----TQLQSFNASVYAGNP 427
L + + RN +P G T LQ NP
Sbjct: 471 LFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLH---TNP 508
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 14/167 (8%)
Query: 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN 302
+ D + +S+ P L+ ++ L+L FN + + +L+ L L S+
Sbjct: 6 ASGVCDGRSRSF--TSI-PS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 303 ELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT--G 360
+ F + SL L L N LS S LS SL+ + L GN G
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS------SLKYLNLMGNPYQTLG 114
Query: 361 PLPDLGGFSSLKILVLGENRLNGTIDK-SLSQLLKLESLSLGRNSFT 406
++L+ L +G I + + L L L + S
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 64/292 (21%), Positives = 116/292 (39%), Gaps = 36/292 (12%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFI-GSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLV 167
+ L L L N S LP I + +L L++S +L ++ FQ + L
Sbjct: 112 VFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQ 168
Query: 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCAL 227
L L ++ L + LS + SL H ++SY L+ +A +++ L ++
Sbjct: 169 NLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNSI 217
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA 287
+ ++ + L L NNL + WL N + ++L +N L+ +
Sbjct: 218 NVV------RGPVNVELTILKLQHNNLTDT---AWLLNYP-GLVEVDLSYNELEKIMYHP 267
Query: 288 FQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347
F M L LY+++N L + + + +L L L +N L +
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD------R 319
Query: 348 LEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399
LE + L+ N I L L +LK L L N + ++L + + ++
Sbjct: 320 LENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 65/306 (21%), Positives = 110/306 (35%), Gaps = 34/306 (11%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 168
L + L+L++ ++ L + ++ +P FQ + L
Sbjct: 64 LLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTV 121
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCAL 227
L LE ++L SL + L L +S NL + D FQ SL+ L L S L
Sbjct: 122 LVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRL 177
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA 287
++ S I S+ ++S N L + + ++ L+ NS+
Sbjct: 178 THVDLSLI------PSLFHANVSYNLLST-------LAIPIAVEELDASHNSINVVRGPV 224
Query: 288 FQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347
L L L N L + L + L YN+L + +
Sbjct: 225 NV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ------R 273
Query: 348 LEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407
LE + + N + +LK+L L N L ++++ Q +LE+L L NS
Sbjct: 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 331
Query: 408 KIPLGT 413
+ L T
Sbjct: 332 TLKLST 337
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 74/368 (20%), Positives = 131/368 (35%), Gaps = 61/368 (16%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLS 164
+ L++ + + N+ P + S ++ LNL+ + ++ F Y
Sbjct: 36 YFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLN-DLQIEEIDTYAFAYAH 93
Query: 165 GLVYLHLEN-------SNLFS-LGSLQWL---------------SHLSSLRHLDLSYINL 201
+ L++ ++F + L L + L L +S NL
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 202 TK-SSDWFQVVAKLRSLKTLVLHSCAL---PPINPSSIWHFNLS----------TSIETL 247
+ D FQ SL+ L L S L S++H N+S ++E L
Sbjct: 154 ERIEDDTFQ---ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210
Query: 248 DLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG 307
D S N++ + V + + L L N+L L + L+ NELE
Sbjct: 211 DASHNSI--NVVRGPVN---VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKI 263
Query: 308 IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGG 367
+ F KM L RL + N+L L+ Q + +L+ + L N + +
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP------TLKVLDLSHNHLLHVERNQPQ 316
Query: 368 FSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNP 427
F L+ L L N + T+ LS L++L+L N + L ++
Sbjct: 317 FDRLENLYLDHNSIV-TL--KLSTHHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDAD 372
Query: 428 ELCGLPLP 435
+ C +
Sbjct: 373 QHCKIDYQ 380
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 8e-22
Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 26/277 (9%)
Query: 142 LRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINL 201
+++ T + L+ + +NS + L + L + L+L+ + +
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQI 81
Query: 202 TK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVY 260
+ + F A +++ L + A+ + P F + L L N+L SS+
Sbjct: 82 EEIDTYAF---AYAHTIQKLYMGFNAIRYLPPHV---FQNVPLLTVLVLERNDL--SSLP 133
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
+F+ + + L++ N+L+ + FQ SL+ L L+SN L + + SL
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFH 190
Query: 321 LCLPYNKLSG----------DLSE-MIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFS 369
+ YN LS D S I + G L + L+ N++T L +
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLT-DTAWLLNYP 248
Query: 370 SLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
L + L N L + ++ +LE L + N
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 11/188 (5%)
Query: 229 PINPS-SIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA 287
P P NL D+ + + + N + + ++++
Sbjct: 5 PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64
Query: 288 FQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347
+ L L ++E F ++ +L + +N + + QN+
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------L 118
Query: 348 LEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
L + LE ND++ LP L L + N L D + L++L L N
Sbjct: 119 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 406 TGKIPLGT 413
T + L
Sbjct: 178 T-HVDLSL 184
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 54/277 (19%), Positives = 90/277 (32%), Gaps = 23/277 (8%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 169
L +L L L NN F L +L L LS L ++P L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS-KNQLKELPEKM--PKTLQEL 126
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS---SDWFQVVAKLRSLKTLVLHSCA 226
+ + + + + L+ + ++L L S + FQ ++ L + +
Sbjct: 127 RVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQ---GMKKLSYIRIADTN 182
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE 286
+ I L S+ L L N + + V N+ L L FNS+
Sbjct: 183 ITTIPQ------GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 287 AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346
+ LR L+L +N+L +P + + L N +S S
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293
Query: 347 SLEGVCLEGNDIT-GPLPD--LGGFSSLKILVLGENR 380
S GV L N + + + LG +
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 7e-22
Identities = 54/296 (18%), Positives = 108/296 (36%), Gaps = 32/296 (10%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENS 174
LR + S+ +P+ + L+L + ++ F+ L L L L N+
Sbjct: 32 HLRVVQCSDLGL--EKVPKDLPP--DTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINN 86
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPS 233
+ + + L L L LS L + ++L+ L +H + + S
Sbjct: 87 KISKISP-GAFAPLVKLERLYLSKNQLKELPEKMP------KTLQELRVHENEITKVRKS 139
Query: 234 SIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS 293
FN + ++L N L SS + F + + Y+ + ++ +IP+ L S
Sbjct: 140 V---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPS 193
Query: 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCL 353
L L+L N++ + +L +L L +N +S + + N L + L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP------HLRELHL 247
Query: 354 EGNDITGPLPDLGGFSSLKILVLGENRLNG------TIDKSLSQLLKLESLSLGRN 403
N + L ++++ L N ++ ++ +SL N
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 20/175 (11%)
Query: 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN 302
+ + SD L V P +L + L+L N + F+ + +L L L +N
Sbjct: 32 HLRVVQCSDLGL--EKV-PK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 303 ELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL 362
++ P F + L RL L N+L L +L+ + + N+IT +
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK--------ELPEK-MPKTLQELRVHENEITK-V 136
Query: 363 PD--LGGFSSLKILVLGENRLNGTI--DKSLSQLLKLESLSLGRNSFTGKIPLGT 413
G + + ++ LG N L + + + + KL + + + T IP G
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 65/306 (21%), Positives = 110/306 (35%), Gaps = 34/306 (11%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 168
L + L+L++ ++ L + ++ +P FQ + L
Sbjct: 70 LLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTV 127
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCAL 227
L LE ++L SL + L L +S NL + D FQ SL+ L L S L
Sbjct: 128 LVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRL 183
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA 287
++ S I S+ ++S N L + + ++ L+ NS+
Sbjct: 184 THVDLSLI------PSLFHANVSYNLLST-------LAIPIAVEELDASHNSINVVRGPV 230
Query: 288 FQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347
L L L N L + L + L YN+L + +
Sbjct: 231 NV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ------R 279
Query: 348 LEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407
LE + + N + +LK+L L N L ++++ Q +LE+L L NS
Sbjct: 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 337
Query: 408 KIPLGT 413
+ L T
Sbjct: 338 TLKLST 343
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 75/345 (21%), Positives = 123/345 (35%), Gaps = 38/345 (11%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 168
A H ++ L + N P P ++ L L L L +PR F L
Sbjct: 94 AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTT 151
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L + N+NL + +SL++L LS LT + + SL + L
Sbjct: 152 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVSYNLLS 205
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
+ ++E LD S N++ + V + + L L N+L
Sbjct: 206 TLAI--------PIAVEELDASHNSI--NVVRGPVN---VELTILKLQHNNLT-DTA-WL 250
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
L + L+ NELE + F KM L RL + N+L L+ Q + +L
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP------TL 303
Query: 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408
+ + L N + + F L+ L L N + T+ LS L++L+L N +
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC- 359
Query: 409 IPLGTQLQSFNASVYAGNPELCGLPLPNK---CPDEESTPLPGRN 450
L ++ + C + + C E P R
Sbjct: 360 NSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 16/202 (7%)
Query: 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
+H L + + + ++ + + L + R ++ LNL ++
Sbjct: 32 VHIDMQTQDVYFGFEDITL-NNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIE 88
Query: 282 GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341
AF +++ LY+ N + P F + L L L N LS + N
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP- 147
Query: 342 GCTMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399
L + + N++ + D +SL+ L L NRL +D LS + L +
Sbjct: 148 -----KLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHAN 198
Query: 400 LGRNSFTGKIPLGTQLQSFNAS 421
+ N + + + ++ +AS
Sbjct: 199 VSYNLLS-TLAIPIAVEELDAS 219
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 10/190 (5%)
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP 285
P NL D+ + + + N + + ++++
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 286 EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345
+ L L ++E F ++ +L + +N + + QN+
Sbjct: 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP----- 123
Query: 346 NSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403
L + LE ND++ LP L L + N L D + L++L L N
Sbjct: 124 -LLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Query: 404 SFTGKIPLGT 413
T + L
Sbjct: 182 RLT-HVDLSL 190
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 9e-09
Identities = 38/238 (15%), Positives = 65/238 (27%), Gaps = 28/238 (11%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFI-GSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV 167
LL L +DLS N + + RL L +S L+ + Q + L
Sbjct: 248 AWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYIS-NNRLVALNLYGQPIPTLK 304
Query: 168 YLHLEN-------SNLFSLGSLQWL------------SHLSSLRHLDLSYINLTKSS--D 206
L L + N L+ L S +L++L LS+ + +S
Sbjct: 305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRA 364
Query: 207 WFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSS-VYPWLFN 265
F+ VA+ C + + L L S
Sbjct: 365 LFRNVARPAVDDA--DQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQG 422
Query: 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323
+N + + + L NEL + + + +L
Sbjct: 423 RCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQ 480
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 32/291 (10%), Positives = 75/291 (25%), Gaps = 19/291 (6%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
++ + L+ LDLS+NH + RL L L S++ +
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLD-HNSIVTL--KLSTHHT 346
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLR--HLDLSYINLTKSSDWFQVVAKLRSLKTLVLH 223
L L L +++ +++ D + + +L
Sbjct: 347 LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ 406
Query: 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLP-----SSSVYPWLFNLSRNIQYLNLGFN 278
AL + ++ +T++ + L + L
Sbjct: 407 YIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466
Query: 279 SLQGSIPEAFQLMVSLRFLYLTS----NELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSE 334
L + QL+ L T+ + G+ + + + ++
Sbjct: 467 QLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQ 526
Query: 335 MIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGG--FSSLKILVLGENRLNG 383
+ E + E + L + + L ++
Sbjct: 527 -ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-22
Identities = 50/274 (18%), Positives = 92/274 (33%), Gaps = 18/274 (6%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 169
L L L L NN F L +L+ L +S L+++P S LV L
Sbjct: 73 DFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYIS-KNHLVEIPPNL--PSSLVEL 128
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229
+ ++ + + S L ++ +++ L S L L L + L
Sbjct: 129 RIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186
Query: 230 INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ 289
I +L ++ L L N + ++ + L LG N ++ +
Sbjct: 187 IPK------DLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238
Query: 290 LMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349
+ +LR L+L +N+L +P + L + L N ++ + G
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297
Query: 350 GVCLEGNDITGPLPDLGGFS---SLKILVLGENR 380
G+ L N + F + G +
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 6e-20
Identities = 60/302 (19%), Positives = 103/302 (34%), Gaps = 40/302 (13%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLHLENS 174
D LDL NN +F G L L L L + K+ + F L L L++ +
Sbjct: 55 DTTLLDLQNNDISELRKDDFKG-LQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISKN 112
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALP--PIN 231
+L + + SSL L + + K F LR++ + + L
Sbjct: 113 HLVEIPP----NLPSSLVELRIHDNRIRKVPKGVFS---GLRNMNCIEMGGNPLENSGFE 165
Query: 232 PSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQL 290
P + L L +S+ L + + L + L+L N +Q +I
Sbjct: 166 PGAFDGLKL----NYLRISEAKL--TGIPKDLP---ETLNELHLDHNKIQ-AIELEDLLR 215
Query: 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350
L L L N++ + +L L L NKLS + + +L L+
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK------LLQV 268
Query: 351 VCLEGNDIT-------GPLPDLGGFSSLKILVLGENRL-NGTIDKSL-SQLLKLESLSLG 401
V L N+IT P+ + + L N + + + + ++ G
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328
Query: 402 RN 403
Sbjct: 329 NY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 4e-19
Identities = 54/296 (18%), Positives = 109/296 (36%), Gaps = 33/296 (11%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENS 174
LR + S+ +P+ I L+L + ++ + F+ L L L L N+
Sbjct: 34 HLRVVQCSDLGL--KAVPKEISP--DTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNN 88
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234
+ + + S L L+ L +S +L + SL L +H + +
Sbjct: 89 KISKIHE-KAFSPLRKLQKLYISKNHLVEIPP-----NLPSSLVELRIHDNRIRKVPKGV 142
Query: 235 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSL 294
F+ ++ +++ N L +S P F+ + YL + L G + + +L
Sbjct: 143 ---FSGLRNMNCIEMGGNPLENSGFEPGAFD-GLKLNYLRISEAKLTGIPKDLPE---TL 195
Query: 295 RFLYLTSNELEGGIPKF-FGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCL 353
L+L N+++ I + L RL L +N++ + + L +L + L
Sbjct: 196 NELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP------TLRELHL 248
Query: 354 EGNDITGPLPDLGGFSSLKILVLGENRL----NGTID--KSLSQLLKLESLSLGRN 403
+ N ++ L L+++ L N + + +SL N
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 24/227 (10%)
Query: 189 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247
LDL ++++ D F L+ L LVL + + I+ + F+ ++ L
Sbjct: 54 PDTTLLDLQNNDISELRKDDF---KGLQHLYALVLVNNKISKIHEKA---FSPLRKLQKL 107
Query: 248 DLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNEL-EG 306
+S N+L + P L ++ L + N ++ F + ++ + + N L
Sbjct: 108 YISKNHL--VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 307 GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDL 365
G LN L + KL+G ++ + L N L L+ N I L DL
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL------NELH---LDHNKIQAIELEDL 213
Query: 366 GGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412
+S L L LG N++ + SLS L L L L N + ++P G
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 25/177 (14%)
Query: 243 SIETLDLSDNNL---PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYL 299
+ + SD L P +S + L+L N + + F+ + L L L
Sbjct: 34 HLRVVQCSDLGLKAVPK--------EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85
Query: 300 TSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT 359
+N++ K F + L +L + N L + +SL + + N I
Sbjct: 86 VNNKISKIHEKAFSPLRKLQKLYISKNHLV--------EIPPN-LPSSLVELRIHDNRIR 136
Query: 360 GPLPD--LGGFSSLKILVLGENRL-NGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT 413
+P G ++ + +G N L N + LKL L + T IP
Sbjct: 137 K-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL 191
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 8e-22
Identities = 45/301 (14%), Positives = 100/301 (33%), Gaps = 32/301 (10%)
Query: 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS--GLVYLHL 171
L + ++ + + + + + +L + + G V L L
Sbjct: 32 LSQWQRHYNADRN--RWHSAWRQANSNNPQIETRTG-RALKATADLLEDATQPGRVALEL 88
Query: 172 ENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPIN 231
+ L LS L+H+ + L + D + L+TL L L +
Sbjct: 89 RSVPLPQF--PDQAFRLSHLQHMTIDAAGLMELPDTM---QQFAGLETLTLARNPLRAL- 142
Query: 232 PSSIWHFNLSTSIETLDLSDNN----LPSS---SVYPWLFNLSRNIQYLNLGFNSLQGSI 284
P+SI + L + LP + N+Q L L + ++ S+
Sbjct: 143 PASIASL---NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL 198
Query: 285 PEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344
P + + +L+ L + ++ L + + L L L + + +
Sbjct: 199 PASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA---- 253
Query: 345 MNSLEGVCLEG-NDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402
L+ + L+ +++ LP + + L+ L L + ++QL + +
Sbjct: 254 --PLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310
Query: 403 N 403
+
Sbjct: 311 H 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 30/237 (12%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
+L L+H+ + LP+ + + L L L+ L +P L+
Sbjct: 95 QFPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLA-RNPLRALPASIASLNR 151
Query: 166 LVYLHLENSN--------LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 217
L L + L S + L +L+ L L + + A L++L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI---ANLQNL 208
Query: 218 KTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNN----LPSSSVYPWLFNLSRNIQYL 273
K+L + + L + +I H +E LDL P + ++ L
Sbjct: 209 KSLKIRNSPLSAL-GPAIHHL---PKLEELDLRGCTALRNYPPI-----FGGRA-PLKRL 258
Query: 274 NL-GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
L ++L ++P + L L L +P ++ + + +P + +
Sbjct: 259 ILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 6e-21
Identities = 50/280 (17%), Positives = 93/280 (33%), Gaps = 25/280 (8%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLH 170
++ + + + + L L L + P LS L ++
Sbjct: 52 QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-VPLPQFPDQAFRLSHLQHMT 110
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC----A 226
++ + L L + + L L L+ L A L L+ L + +C
Sbjct: 111 IDAAGLMELPD--TMQQFAGLETLTLARNPLRALPASI---ASLNRLRELSIRACPELTE 165
Query: 227 LPPI--NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSI 284
LP + + ++++L L + S+ + NL N++ L + + L ++
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQ-NLKSLKIRNSPLS-AL 221
Query: 285 PEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP-YNKLSGDLSEMIQNLSGGC 343
A + L L L P FG L RL L + L L I L+
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLT--- 277
Query: 344 TMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLN 382
LE + L G LP + + I+++ +
Sbjct: 278 ---QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 53/315 (16%), Positives = 99/315 (31%), Gaps = 37/315 (11%)
Query: 132 LPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSL 191
S L T+L N++ S ++ ++
Sbjct: 4 SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQ-----RHYNADRNRWHSAWRQANSNNP 58
Query: 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSD 251
+ + L ++D + A L L S LP P F L + ++ + +
Sbjct: 59 QIETRTGRALKATADLLED-ATQPGRVALELRSVPLPQF-PDQA--FRL-SHLQHMTIDA 113
Query: 252 NNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTS-NELE----- 305
L + + + ++ L L N L+ ++P + + LR L + + EL
Sbjct: 114 AGL--MELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169
Query: 306 ---GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL 362
+ +L L L + + L I NL +L+ + + + ++
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ------NLKSLKIRNSPLSALG 222
Query: 363 PDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG----TQLQSF 418
P + L+ L L L+ L L S +PL TQL+
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 419 NASVYAGNPELCGLP 433
+ G L LP
Sbjct: 283 DLR---GCVNLSRLP 294
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 39/258 (15%), Positives = 72/258 (27%), Gaps = 71/258 (27%)
Query: 233 SSIWHFNLSTSIETLDLSDNN----LPSS-----------------------SVYPWLFN 265
SS H + S+ E L + S P +
Sbjct: 3 SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET 62
Query: 266 LS----------------RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP 309
+ L L L P+ + L+ + + + L +P
Sbjct: 63 RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120
Query: 310 KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD----- 364
+ L L L N L L I +L+ L + + LP+
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLN------RLRELSIRACPELTELPEPLAST 173
Query: 365 -----LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG----TQL 415
G +L+ L L + ++ S++ L L+SL + + + + +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231
Query: 416 QSFNASVYAGNPELCGLP 433
+ + G L P
Sbjct: 232 EELDLR---GCTALRNYP 246
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 1e-21
Identities = 55/271 (20%), Positives = 101/271 (37%), Gaps = 12/271 (4%)
Query: 140 SRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSY 198
++ L+LS + + Q L L L ++ + ++ S L SL HLDLSY
Sbjct: 52 EAVKSLDLS-NNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSY 109
Query: 199 INLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS 257
L+ SS WF+ L SL L L + +S+ F+ T ++ L + + + +
Sbjct: 110 NYLSNLSSSWFK---PLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDT-FT 163
Query: 258 SVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCS 317
+ F ++ L + + LQ P++ + + ++ L L + + F S
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223
Query: 318 LNRLCLPYNKLSGDLSEMIQNLSGG--CTMNSLEGVCLEGNDITGPLPDLGGFSSLKILV 375
+ L L L + + V + + + L S L L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283
Query: 376 LGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
N+L D +L L+ + L N +
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 11/146 (7%)
Query: 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324
L+ ++ L+L N + Q V+L+ L LTSN + F + SL L L
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFS---SLKILVLGENRL 381
YN LS S + LS SL + L GN L + FS L+IL +G
Sbjct: 109 YNYLSNLSSSWFKPLS------SLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDT 161
Query: 382 NGTI-DKSLSQLLKLESLSLGRNSFT 406
I K + L LE L + +
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQ 187
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 25/191 (13%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFL 297
L+ ++++LDLS+N + + + N+Q L L N + +I E +F + SL L
Sbjct: 49 GLTEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHL 105
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS--------GDLSEMIQNLSGGCT----- 344
L+ N L +F + SL L L N L+++ G
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 345 -------MNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLE 396
+ LE + ++ +D+ L ++ L+L + ++ + +E
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225
Query: 397 SLSLGRNSFTG 407
L L
Sbjct: 226 CLELRDTDLDT 236
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 4e-20
Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 22/244 (9%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHLENS 174
+ R L+L N + F L L L LS + + F L+ L L L ++
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKH-LRHLEILQLS-RNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSC-ALPPINP 232
L ++ + +LS L+ L L + S F ++ SL+ L L L I+
Sbjct: 123 RLTTIPN-GAFVYLSKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSYISE 178
Query: 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMV 292
+ F +++ L+L+ NL P L L + L+L N L P +FQ ++
Sbjct: 179 GA---FEGLSNLRYLNLAMCNL---REIPNLTPLI-KLDELDLSGNHLSAIRPGSFQGLM 231
Query: 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVC 352
L+ L++ ++++ F + SL + L +N L+ ++ L LE +
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH------HLERIH 285
Query: 353 LEGN 356
L N
Sbjct: 286 LHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 65/220 (29%), Positives = 95/220 (43%), Gaps = 16/220 (7%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 168
+ L L L LS NH + F G L+ L L L L +P F YLS L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELF-DNRLTTIPNGAFVYLSKLKE 140
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTK-SSDWFQVVAKLRSLKTLVLHSCA 226
L L N+ + S+ S + + SLR LDL + L+ S F+ L +L+ L L C
Sbjct: 141 LWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCN 196
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE 286
L I + ++ LDLS N+L S++ P F ++Q L + + +Q
Sbjct: 197 L-----REIPNLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249
Query: 287 AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326
AF + SL + L N L F + L R+ L +N
Sbjct: 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 9e-19
Identities = 61/293 (20%), Positives = 104/293 (35%), Gaps = 46/293 (15%)
Query: 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYLHLEN 173
+ + + +P+ I + R LNL + + F++L L L L
Sbjct: 43 NQFSKVICVRKNL--REVPDGI--STNTRLLNLH-ENQIQIIKVNSFKHLRHLEILQLSR 97
Query: 174 SNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINP 232
+++ ++ + L++L L+L LT + F L LK L L + + I
Sbjct: 98 NHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPS 153
Query: 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMV 292
+ FN S+ LDL + S + F N++YLNL +L+ IP ++
Sbjct: 154 YA---FNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLI 207
Query: 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVC 352
L L L+ N L P F + L +L + +++ NL
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ------------ 255
Query: 353 LEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
SL + L N L + L LE + L N +
Sbjct: 256 -----------------SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 7e-17
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVY 168
A + L L+ L L NN P F + LR L+L L + F+ LS L Y
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCAL 227
L+L NL + + L+ L L LDLS +L+ FQ L L+ L + +
Sbjct: 190 LNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQ---GLMHLQKLWMIQSQI 243
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
I ++ F+ S+ ++L+ NNL + + LF +++ ++L N
Sbjct: 244 QVIERNA---FDNLQSLVEINLAHNNL--TLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 32/217 (14%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
+ST+ L+L +N + + F R+++ L L N ++ AF + +L L
Sbjct: 61 GISTNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG---------------DLSEM--IQNLSG 341
L N L F + L L L N + DL E+ + +S
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 342 GC--TMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399
G +++L + L ++ +P+L L L L N L+ S L+ L+ L
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 400 LGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPN 436
+ ++ Q+Q + + L + L +
Sbjct: 238 MIQS----------QIQVIERNAFDNLQSLVEINLAH 264
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 16/180 (8%)
Query: 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLT 300
S + NL V P +S N + LNL N +Q +F+ + L L L+
Sbjct: 42 SNQFSKVICVRKNL--REV-PD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96
Query: 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360
N + F + +LN L L N+L+ + LS L+ + L N I
Sbjct: 97 RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS------KLKELWLRNNPIES 150
Query: 361 PLPD--LGGFSSLKILVLGE-NRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQS 417
+P SL+ L LGE RL+ + + L L L+L + +IP T L
Sbjct: 151 -IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIK 208
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLV 167
P L L L LDLS NH F G L L+ L + + + + R F L LV
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMI-QSQIQVIERNAFDNLQSLV 258
Query: 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197
++L ++NL L + L L + L
Sbjct: 259 EINLAHNNLTLL-PHDLFTPLHHLERIHLH 287
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 7e-20
Identities = 58/220 (26%), Positives = 88/220 (40%), Gaps = 16/220 (7%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 168
LH L L L N + F G L+ L L L L +P F+YLS L
Sbjct: 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELF-DNWLTVIPSGAFEYLSKLRE 151
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTK-SSDWFQVVAKLRSLKTLVLHSCA 226
L L N+ + S+ S + + SL LDL + L S F+ L +LK L L C
Sbjct: 152 LWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCN 207
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE 286
+ + + +E L++S N+ + P F+ +++ L + + +
Sbjct: 208 I-----KDMPNLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Query: 287 AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326
AF + SL L L N L F + L L L +N
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 9e-20
Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS-CGTSLLKVPRPFQYLSGLVYLHLENS 174
+ R+L+L N+ F L L L L ++ F L+ L L L ++
Sbjct: 76 NTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDN 133
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSC-ALPPINP 232
L + S +LS LR L L + S F ++ SL L L L I+
Sbjct: 134 WLTVIPS-GAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEYISE 189
Query: 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMV 292
+ F +++ L+L N+ P L L ++ L + N P +F +
Sbjct: 190 GA---FEGLFNLKYLNLGMCNI---KDMPNLTPLV-GLEELEMSGNHFPEIRPGSFHGLS 242
Query: 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC--TMNSLEG 350
SL+ L++ ++++ F + SL L L +N LS +L + L
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS--------SLPHDLFTPLRYLVE 294
Query: 351 VCLEGN 356
+ L N
Sbjct: 295 LHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 15/200 (7%)
Query: 106 TISP-ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYL 163
I A L L L+L +N P F LS+LR L L + +P F +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY-LSKLRELWLR-NNPIESIPSYAFNRV 170
Query: 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLH 223
L+ L L S L +L++L+L N+ + L L+ L +
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL----TPLVGLEELEMS 226
Query: 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS 283
P I P S +S++ L + ++ + S + F+ ++ LNL N+L S
Sbjct: 227 GNHFPEIRPGSFHGL---SSLKKLWVMNSQV--SLIERNAFDGLASLVELNLAHNNLS-S 280
Query: 284 IPE-AFQLMVSLRFLYLTSN 302
+P F + L L+L N
Sbjct: 281 LPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 14/174 (8%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVY 168
A L LR L L NN P F + L L+L L + F+ L L Y
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCAL 227
L+L N+ + L+ L L L++S + + F L SLK L + + +
Sbjct: 201 LNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQV 254
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
I ++ F+ S+ L+L+ NNL SS+ LF R + L+L N
Sbjct: 255 SLIERNA---FDGLASLVELNLAHNNL--SSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 51/250 (20%), Positives = 85/250 (34%), Gaps = 51/250 (20%)
Query: 189 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247
S+ R+L+L N+ +D F+ L L+ L L ++ I + FN S+ TL
Sbjct: 75 SNTRYLNLMENNIQMIQADTFR---HLHHLEVLQLGRNSIRQIEVGA---FNGLASLNTL 128
Query: 248 DLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTS-NELEG 306
+L DN L + + F ++ L L N ++ AF + SL L L +LE
Sbjct: 129 ELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 307 GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLG 366
F + +L L L + +P+L
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKD-------------------------------MPNLT 215
Query: 367 GFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGN 426
L+ L + N S L L+ L + + Q+ + + G
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS----------QVSLIERNAFDGL 265
Query: 427 PELCGLPLPN 436
L L L +
Sbjct: 266 ASLVELNLAH 275
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 15/169 (8%)
Query: 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLT 300
S + + L S V P + N +YLNL N++Q + F+ + L L L
Sbjct: 53 SNQFSKVVCTRRGL--SEV-PQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107
Query: 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360
N + F + SLN L L N L+ S + LS L + L N I
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS------KLRELWLRNNPIES 161
Query: 361 PLPD--LGGFSSLKILVLGE-NRLNGTIDKSLSQLLKLESLSLGRNSFT 406
+P SL L LGE +L + + L L+ L+LG +
Sbjct: 162 -IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 8e-20
Identities = 72/306 (23%), Positives = 112/306 (36%), Gaps = 54/306 (17%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176
L+L+N S LPE L L SC SL ++P Q L L+ + L
Sbjct: 73 AHELELNNLGL--SSLPELPPH---LESLVASC-NSLTELPELPQSLKSLLVDNNNLKAL 126
Query: 177 FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW 236
L L +L +S L K + + LK + + + +L + P
Sbjct: 127 SDL--------PPLLEYLGVSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKL-PDLP- 172
Query: 237 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296
S+E + +N L P L NL + + NSL+ +P+ L +SL
Sbjct: 173 -----PSLEFIAAGNNQL---EELPELQNLP-FLTAIYADNNSLK-KLPD---LPLSLES 219
Query: 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGN 356
+ +N LE + L + N L L ++ + LE + + N
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---------LEALNVRDN 267
Query: 357 DITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLK-LESLSLGRNSFTGKIPLGTQL 415
+T LP+L SL L + EN + LS+L L L+ N L L
Sbjct: 268 YLTD-LPEL--PQSLTFLDVSENIFS-----GLSELPPNLYYLNASSNEIRSLCDLPPSL 319
Query: 416 QSFNAS 421
+ N S
Sbjct: 320 EELNVS 325
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-19
Identities = 68/316 (21%), Positives = 111/316 (35%), Gaps = 54/316 (17%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176
L L S N + LPE SL L N + +L +P L YL + N+ L
Sbjct: 93 LESLVASCNSL--TELPELPQSLKSLLVDNNNL-KALSDLP------PLLEYLGVSNNQL 143
Query: 177 FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW 236
L L + S L+ +D+ +L K D SL+ + + L +
Sbjct: 144 EKLPE---LQNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQL-----EELP 189
Query: 237 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296
+ + +N+L L +L +++ + G N L Q + L
Sbjct: 190 ELQNLPFLTAIYADNNSLKK------LPDLPLSLESIVAGNNIL--EELPELQNLPFLTT 241
Query: 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN---------- 346
+Y +N L+ SL L + N L+ DL E+ Q+L+
Sbjct: 242 IYADNNLLK----TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELP 296
Query: 347 -SLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
+L + N+I L DL SL+ L + N+L + +LE L N
Sbjct: 297 PNLYYLNASSNEIRS-LCDL--PPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL 349
Query: 406 TGKIPLGTQLQSFNAS 421
L L+ +
Sbjct: 350 AEVPELPQNLKQLHVE 365
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 61/304 (20%), Positives = 108/304 (35%), Gaps = 51/304 (16%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
P L L L + NN L + L + ++L+ Q L L
Sbjct: 189 PELQNLPFLTAIYADNNS-----LKKLPDLPLSLESIVAG--NNILEELPELQNLPFLTT 241
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
++ +N+ L +L L SL L++ LT + Q L L L
Sbjct: 242 IYADNNLLKTLPDL-----PPSLEALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLS 293
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
L ++ L+ S N + S L +L +++ LN+ N L +P
Sbjct: 294 ----------ELPPNLYYLNASSNEIRS------LCDLPPSLEELNVSNNKLI-ELPALP 336
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG--DLSEMIQNLSGGC--- 343
L L + N L +P+ +L +L + YN L D+ E +++L
Sbjct: 337 P---RLERLIASFNHLAE-VPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389
Query: 344 ----TMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399
+L+ + +E N + PD+ S++ L + R+ + + KLE
Sbjct: 390 EVPELPQNLKQLHVETNPLRE-FPDI--PESVEDLRMNSERVVDPYEFAHETTDKLEDDV 446
Query: 400 LGRN 403
+
Sbjct: 447 FEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 44/246 (17%), Positives = 76/246 (30%), Gaps = 48/246 (19%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
P L L L + NN LP+ SL L + L +P Q L+ L
Sbjct: 231 PELQNLPFLTTIYADNNLL--KTLPDLPPSLEALNVRDNY----LTDLPELPQSLTFLDV 284
Query: 169 LHLENSNLFSL-GSLQWL-----------SHLSSLRHLDLSYINLTKSSDWFQVVAKLRS 216
S L L +L +L SL L++S L +
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL------PPR 338
Query: 217 LKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPS-------------SSVYPWL 263
L+ L+ L + P +++ L + N L +S +
Sbjct: 339 LERLIASFNHLAEV-PELP------QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391
Query: 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323
L +N++ L++ N L+ P+ + S+ L + S + L
Sbjct: 392 PELPQNLKQLHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447
Query: 324 PYNKLS 329
++
Sbjct: 448 EHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 47/256 (18%), Positives = 75/256 (29%), Gaps = 56/256 (21%)
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
+ + N+ + + L H S+L + + ++S
Sbjct: 1 MFINPRNVSNTFLQEPLRHSSNLTEMPVE-------------AENVKSKTEYYNAWSEWE 47
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
P E +++ + L L R L L L S+PE
Sbjct: 48 RNAPPGN--------GEQREMAVSRLRD--------CLDRQAHELELNNLGLS-SLPELP 90
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
L L + N L +P+ + SL LS L
Sbjct: 91 P---HLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPP-------------LL 133
Query: 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSL-SQLLKLESLSLGRNSFTG 407
E + + N + LP+L S LKI+ + N L K L LE ++ G N
Sbjct: 134 EYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSL-----KKLPDLPPSLEFIAAGNNQLEE 187
Query: 408 KIPLG--TQLQSFNAS 421
L L + A
Sbjct: 188 LPELQNLPFLTAIYAD 203
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 1e-19
Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 14/253 (5%)
Query: 85 VKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIG----SLS 140
+K L+L+R +R + +L + L+ L L N G+ P + L+
Sbjct: 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124
Query: 141 RLRYLNLSCGTSLLKVPRPFQYLS-GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYI 199
L N+S T + Q+L GL L + ++ + S + + +L LDLS
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDN 183
Query: 200 NLT--KSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS 257
+ K +L+ L L + + + ++ LDLS N+L
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL-RD 242
Query: 258 SVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCS 317
+ + + LNL F L+ +P+ L L L L+ N L+ P ++
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLD-RNP-SPDELPQ 297
Query: 318 LNRLCLPYNKLSG 330
+ L L N
Sbjct: 298 VGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 2e-16
Identities = 47/253 (18%), Positives = 85/253 (33%), Gaps = 20/253 (7%)
Query: 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 222
L L + G+L+ L +S L+ L L + +T ++ + A L L L
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLG-ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 223 HSCALPPINPSSIWHFN-LSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
+ + + L ++ L ++ + + + + L+L N
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS--LNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 282 GSIPEAFQL----MVSLRFLYLTSNELE---GGIPKFFGKMCSLNRLCLPYNKLSGDLSE 334
G L +L+ L L + +E G L L L +N L
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
Query: 335 MIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLK 394
+ + L + L + L + L +L L NRL+ S +L +
Sbjct: 247 PSCDW-----PSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNP--SPDELPQ 297
Query: 395 LESLSLGRNSFTG 407
+ +LSL N F
Sbjct: 298 VGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 12/234 (5%)
Query: 182 LQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241
++ SL +L L ++ F + K SLK L + + +P
Sbjct: 36 VELYGGGRSLEYL-LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94
Query: 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL----MVSLRFL 297
+ ++ L L + + ++ P L ++ LNL S +L L+ L
Sbjct: 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
+ + +L+ L L N G+ + +L+ + L
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK--FPTLQVLALRNAG 212
Query: 358 IT----GPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLL-KLESLSLGRNSFT 406
+ L+ L L N L +L SL+L
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 11/127 (8%)
Query: 78 CSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIG 137
C K ++VL LR N+ G S L+ LDLS+N +
Sbjct: 196 CPLKFPTLQVLALR-----NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250
Query: 138 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197
S+L LNLS T L +VP+ + L L L + L S L + +L L
Sbjct: 251 WPSQLNSLNLS-FTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPD---ELPQVGNLSLK 304
Query: 198 YINLTKS 204
S
Sbjct: 305 GNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 35/182 (19%), Positives = 51/182 (28%), Gaps = 42/182 (23%)
Query: 108 SPALLKLHDLRHLDLSNNHF-GGSPLPEFI--GSLSRLRYLNLSC--GTSLLKV-PRPFQ 161
+ L LDLS+N G L + L+ L L + V
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
L L L +++L S L L+LS+ L +
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ------------------ 267
Query: 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
+P L + LDLS N L + L + L+L N
Sbjct: 268 -----VPK---------GLPAKLSVLDLSYNRLDRNPSPDELPQV----GNLSLKGNPFL 309
Query: 282 GS 283
S
Sbjct: 310 DS 311
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 1e-19
Identities = 68/301 (22%), Positives = 104/301 (34%), Gaps = 53/301 (17%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176
LR L++S N + LP L L + T L +P SGL L + + L
Sbjct: 83 LRTLEVSGNQL--TSLPVLPPGLLELSIFSNP-LTHLPALP------SGLCKLWIFGNQL 133
Query: 177 FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW 236
SL L L+ L +S L L L ++ L + P
Sbjct: 134 TSLPVL-----PPGLQELSVSDNQLASLPALPS------ELCKLWAYNNQLTSL-PMLP- 180
Query: 237 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296
+ ++ L +SDN L S L L + L N L S+P L L+
Sbjct: 181 -----SGLQELSVSDNQLAS------LPTLPSELYKLWAYNNRLT-SLPA---LPSGLKE 225
Query: 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGN 356
L ++ N L +P L L + N+L+ L + L SL + N
Sbjct: 226 LIVSGNRLTS-LPVLPS---ELKELMVSGNRLT-SLPMLPSGLL------SLS---VYRN 271
Query: 357 DITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQL 415
+T LP+ L SS + L N L+ ++L ++ S F +
Sbjct: 272 QLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330
Query: 416 Q 416
Sbjct: 331 T 331
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 2e-19
Identities = 58/297 (19%), Positives = 103/297 (34%), Gaps = 48/297 (16%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176
L++ + + LP+ + + + L + +L +P L L + + L
Sbjct: 42 NAVLNVGESGL--TTLPDCLP--AHITTLVIPD-NNLTSLP---ALPPELRTLEVSGNQL 93
Query: 177 FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW 236
SL L L L +L L L + L + P
Sbjct: 94 TSLPVL--PPGLLELSIFSNPLTHLPAL---------PSGLCKLWIFGNQLTSL-PVLP- 140
Query: 237 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296
++ L +SDN L +S+ L L N L S+P L+
Sbjct: 141 -----PGLQELSVSDNQL--ASLPALPSEL----CKLWAYNNQLT-SLPMLPS---GLQE 185
Query: 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQ-NLSG------GCTMNSLE 349
L ++ N+L +P ++ L L S + + +SG + L+
Sbjct: 186 LSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244
Query: 350 GVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
+ + GN +T LP L S L L + N+L + +SL L +++L N +
Sbjct: 245 ELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 51/250 (20%), Positives = 83/250 (33%), Gaps = 51/250 (20%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
++ L +L H LP L L + G L +P G
Sbjct: 95 SLPVLPPGLLELSIFSNPLTH-----LPALPSG---LCKLWIF-GNQLTSLPV---LPPG 142
Query: 166 LVYLHLENSNLFSL----GSLQWL-----------SHLSSLRHLDLSYINLTKSSDWFQV 210
L L + ++ L SL L L S L+ L +S L
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP-- 200
Query: 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270
++L L +LP L + ++ L +S N L S L L +
Sbjct: 201 -SELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLTS------LPVLPSEL 243
Query: 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG 330
+ L + N L S+P L L L + N+L +P+ + S + L N LS
Sbjct: 244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298
Query: 331 DLSEMIQNLS 340
+ ++ ++
Sbjct: 299 RTLQALREIT 308
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 53/260 (20%), Positives = 88/260 (33%), Gaps = 48/260 (18%)
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
+G L++ S L +L + + L + NLT + A L+TL
Sbjct: 38 LNNGNAVLNVGESGLTTLPD----CLPAHITTLVIPDNNLTS------LPALPPELRTLE 87
Query: 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
+ L + P + +LP+ L + L + N L
Sbjct: 88 VSGNQLTSL-PVLPPGL---LELSIFSNPLTHLPA---------LPSGLCKLWIFGNQLT 134
Query: 282 GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341
S+P L+ L ++ N+L +P L +L N+L+ L + L
Sbjct: 135 -SLPVLPP---GLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSGL-- 183
Query: 342 GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401
L + N + LP L S L L NRL ++ S L+ L +
Sbjct: 184 ----QELS---VSDNQLAS-LPTL--PSELYKLWAYNNRLT-SLPALPSG---LKELIVS 229
Query: 402 RNSFTGKIPLGTQLQSFNAS 421
N T L ++L+ S
Sbjct: 230 GNRLTSLPVLPSELKELMVS 249
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 8e-11
Identities = 40/195 (20%), Positives = 63/195 (32%), Gaps = 37/195 (18%)
Query: 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQ 271
L + L + P + I TL + DNNL +S+ L +
Sbjct: 37 CLNNGNAVLNVGESGLTTL-PDCLP-----AHITTLVIPDNNL--TSLPALPPEL----R 84
Query: 272 YLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331
L + N L S+P ++ L L L +L + N+L+
Sbjct: 85 TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-S 135
Query: 332 LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQ 391
L + L L + N + LP L S L L N+L ++ S
Sbjct: 136 LPVLPPGLQ------ELS---VSDNQLAS-LPAL--PSELCKLWAYNNQLT-SLPMLPSG 182
Query: 392 LLKLESLSLGRNSFT 406
L+ LS+ N
Sbjct: 183 ---LQELSVSDNQLA 194
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 3e-19
Identities = 64/319 (20%), Positives = 108/319 (33%), Gaps = 53/319 (16%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 169
+ +L DL+ L + G F+ LS L+ L
Sbjct: 49 SFSRLQDLQFLKVEQQTPGLVIRNN------------------------TFRGLSSLIIL 84
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS---SDWFQVVAKLRSLKTLVLHSCA 226
L+ + L + L++L L L+ NL + ++F+ L SL+ LVL
Sbjct: 85 KLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK---PLTSLEMLVLRDNN 140
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ----- 281
+ I P+S F LDL+ N + S L ++ L L +LQ
Sbjct: 141 IKKIQPASF--FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 282 ---GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL-----CLPYNKLSGDLS 333
S+ L L+ N + + K F + ++ YN S
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 334 EMIQNLS----GGCTMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRLNGTIDK 387
++ G + ++ L + I L F+ L+ L L +N +N D
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 388 SLSQLLKLESLSLGRNSFT 406
+ L L L+L +N
Sbjct: 318 AFWGLTHLLKLNLSQNFLG 336
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 8e-16
Identities = 59/289 (20%), Positives = 107/289 (37%), Gaps = 32/289 (11%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS-------CGTSLLKVPRPFQYLSG 165
L L L L +N+ F ++ R L+L+ C LL L
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186
Query: 166 LVYLHLE--NSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS-SDWFQVVAKLRSLKTLVL 222
L + L+ N +S+ LDLS +S + F +++L+L
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 223 HSCALPP--------INPSSIWHFNLS-TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYL 273
+ +P + L + ++T DLS + + ++ +F+ +++ L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQL 304
Query: 274 NLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL 332
L N + I + AF + L L L+ N L + F + L L L YN +
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363
Query: 333 SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGEN 379
+ L +L+ + L+ N + +PD +SL+ + L N
Sbjct: 364 DQSFLGLP------NLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 24/234 (10%)
Query: 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLR 143
H +L L ++ L K + LDLS N F S F +++ +
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 144 YLNL----------SCGTSLLKVPRPFQY----LSGLVYLHLENSNLFSLGSLQWLSHLS 189
+L S G + K P F + SG+ L S +F+L SH +
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFT 299
Query: 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDL 249
L L L+ + K D L L L L L I+ F +E LDL
Sbjct: 300 DLEQLTLAQNEINKIDD--NAFWGLTHLLKLNLSQNFLGSIDSRM---FENLDKLEVLDL 354
Query: 250 SDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSN 302
S N++ ++ F N++ L L N L+ S+P+ F + SL+ ++L +N
Sbjct: 355 SYNHI--RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 8e-15
Identities = 65/325 (20%), Positives = 105/325 (32%), Gaps = 53/325 (16%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFI-GSLSRLRYLNLSCGTSLLKVP--RPFQYLSGL 166
A L +L L L+ + G+ L L+ L L L ++ K+ F +
Sbjct: 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR-DNNIKKIQPASFFLNMRRF 156
Query: 167 VYLHLENSNLFSLGSLQWLS-HLSSLRHLDLSYINLTK------SSDWFQVVAKLRSLKT 219
L L + + S+ L+ L LS I L + K S+ T
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216
Query: 220 LVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN----------LSRN 269
L L + T I++L LS++ SS F +
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276
Query: 270 IQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
++ +L + + ++ + F L L L NE+ F + L +L L N L
Sbjct: 277 VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 329 SGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKS 388
S M +NL L++L L N + D+S
Sbjct: 336 GSIDSRMFENLD-----------------------------KLEVLDLSYNHIRALGDQS 366
Query: 389 LSQLLKLESLSLGRNSFTGKIPLGT 413
L L+ L+L N +P G
Sbjct: 367 FLGLPNLKELALDTNQLK-SVPDGI 390
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 11/147 (7%)
Query: 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNRLCL 323
L ++ Y++L NS+ +F + L+FL + I F + SL L L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF---SSLKILVLGENR 380
YN+ + L+ +LE + L ++ G + F +SL++LVL +N
Sbjct: 87 DYNQFLQLETGAFNGLA------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140
Query: 381 LNGTIDKSL-SQLLKLESLSLGRNSFT 406
+ S + + L L N
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVK 167
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Query: 112 LKLHDLRHLDLSNNHFGGSPLPEFI-GSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYL 169
L+ ++ DLS + L + + + L L L+ + K+ F L+ L+ L
Sbjct: 272 LEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKL 328
Query: 170 HLENSNLFSL--GSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCA 226
+L + L S+ + L L LDLSY ++ F L +LK L L +
Sbjct: 329 NLSQNFLGSIDSRMFENLD---KLEVLDLSYNHIRALGDQSFL---GLPNLKELALDTNQ 382
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNL 254
L + F+ TS++ + L N
Sbjct: 383 LKSVPDGI---FDRLTSLQKIWLHTNPW 407
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 14/196 (7%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 168
+ +L L L +N F G L+ L L+LS L V F L L
Sbjct: 51 SFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCAL 227
LHL+ L LG L++L++L L L D F+ L +L L LH +
Sbjct: 110 LHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFR---DLGNLTHLFLHGNRI 165
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE- 286
+ + F S++ L L N + + V+P F + L L N+L ++P
Sbjct: 166 SSVPERA---FRGLHSLDRLLLHQNRV--AHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 219
Query: 287 AFQLMVSLRFLYLTSN 302
A + +L++L L N
Sbjct: 220 ALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 52/214 (24%), Positives = 77/214 (35%), Gaps = 14/214 (6%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHLE-N 173
+ + L N P F L L L L ++ F L+ L L L N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRA-CRNLTILWLH-SNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 174 SNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINP 232
+ L S+ L L L L L + F+ L +L+ L L AL +
Sbjct: 91 AQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQALPD 146
Query: 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMV 292
+ F ++ L L N + SSV F ++ L L N + P AF+ +
Sbjct: 147 DT---FRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326
L LYL +N L + + +L L L N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 41/196 (20%), Positives = 71/196 (36%), Gaps = 26/196 (13%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
+ + + + L N + S V F RN+ L L N L AF + L L
Sbjct: 29 GIPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86
Query: 299 LTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC--TMNSLEGVCLEG 355
L+ N + F + L+ L L +Q L G + +L+ + L+
Sbjct: 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCG--------LQELGPGLFRGLAALQYLYLQD 138
Query: 356 NDITGPLPD--LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT 413
N + LPD +L L L NR++ +++ L L+ L L +N
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN---------- 187
Query: 414 QLQSFNASVYAGNPEL 429
++ + + L
Sbjct: 188 RVAHVHPHAFRDLGRL 203
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 5e-14
Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 25/223 (11%)
Query: 215 RSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274
+ + + LH + + +S F ++ L L N L + + F ++ L+
Sbjct: 32 AASQRIFLHGNRISHVPAAS---FRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLD 86
Query: 275 LGFNSLQGSIP-EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLS 333
L N+ S+ F + L L+L L+ P F + +L L L N L
Sbjct: 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146
Query: 334 EMIQNLSGGCTMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRLNGTIDKSLSQ 391
+ ++L +L + L GN I+ +P+ G SL L+L +NR+ +
Sbjct: 147 DTFRDLG------NLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 392 LLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPL 434
L +L +L L N L + A L L L
Sbjct: 200 LGRLMTLYLFAN----------NLSALPTEALAPLRALQYLRL 232
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 50/321 (15%), Positives = 108/321 (33%), Gaps = 30/321 (9%)
Query: 112 LKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHL 171
L + +N F L + +++ L N+ C K L+ L
Sbjct: 163 FNTESLHIVFPTNKEFH-FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221
Query: 172 ENSNLFSLGSLQW--------LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLH 223
++ + W L +++ + +S + L D+ SLK L +H
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281
Query: 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS 283
+ + + +++ + + + + + +L+ N L +
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDT 339
Query: 284 IPEAFQLMVSLRFLYLTSNELE--GGIPKFFGKMCSLNRLCLPYNKLSGDLSE------- 334
+ E + L L L N+L+ I + +M SL +L + N +S D +
Sbjct: 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399
Query: 335 ----------MIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT 384
++ + C ++ + L N I + +L+ L + N+L
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 385 IDKSLSQLLKLESLSLGRNSF 405
D +L L+ + L N +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 54/349 (15%), Positives = 100/349 (28%), Gaps = 59/349 (16%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLE 172
+ L+ L LS H S + L L + L L
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG---ETYGEKEDPEGLQDFNTESL- 168
Query: 173 NSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD---------WFQVVAKLRSLKTLVLH 223
+ + ++ +S +L N+ + + L L L+
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228
Query: 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLPS--------------------------- 256
+ + I T++ +S+ L
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288
Query: 257 SSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMC 316
+++ + N+ N + + + L ++N L + + G +
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348
Query: 317 SLNRLCLPYNKLS--GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFS---SL 371
L L L N+L ++EM + SL+ + + N ++ G S SL
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMK------SLQQLDISQNSVSYDEKK-GDCSWTKSL 401
Query: 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG----TQLQ 416
L + N L TI + L +K+ L L N IP LQ
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKV--LDLHSNKIK-SIPKQVVKLEALQ 447
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 63/324 (19%), Positives = 111/324 (34%), Gaps = 23/324 (7%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 169
+L L LR L +S+N + F L YL+LS L+K+ L +L
Sbjct: 40 DILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLS-HNKLVKIS--CHPTVNLKHL 95
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK-TLVLHSCALP 228
L + +L + ++S L+ L LS +L KSS +A L K LVL
Sbjct: 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGE 153
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW---LFNLSRNIQYLNLGFNSLQGSIP 285
+P + + +T + N + + NL + L N +
Sbjct: 154 KEDPEGL--QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211
Query: 286 EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG-DLSEMIQNLSGGCT 344
+L + + LT N +E F + + + Y +S L + +
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271
Query: 345 MNSLEGVCLE--GNDITGPLPDLG--GFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400
SL+ + + +D+ G FS++ I + S++ L
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331
Query: 401 GRNSFTGKIPLG-----TQLQSFN 419
N T T+L++
Sbjct: 332 SNNLLT-DTVFENCGHLTELETLI 354
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 18/171 (10%)
Query: 246 TLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305
+D S N L V P +LS+ LN+ N + + LR L ++ N ++
Sbjct: 4 LVDRSKNGL--IHV-PK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58
Query: 306 GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDL 365
F L L L +NKL +S +L+ + L N LP
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKL--------VKISCH-PTVNLKHLDLSFNAFDA-LPIC 108
Query: 366 GGFS---SLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT 413
F LK L L L + ++ L + L + ++ K
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 8/119 (6%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
I+ ++ L+ LD+S N L LN+S L +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS-SNILTDTI-FRCLPPRI 423
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHS 224
L L ++ + S+ + L +L+ L+++ L F +L SL+ + LH+
Sbjct: 424 KVLDLHSNKIKSIPKQ--VVKLEALQELNVASNQLKSVPDGIFD---RLTSLQKIWLHT 477
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 57/314 (18%), Positives = 98/314 (31%), Gaps = 50/314 (15%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLH 170
L + +L +L +N + L++L YLN L K+ L YL+
Sbjct: 81 LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCD-TNKLTKLD--VSQNPLLTYLN 133
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI 230
+ L + +SH + L LD D V L TL + +
Sbjct: 134 CARNTLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKITEL 185
Query: 231 NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290
+ S + L+ NN+ N + + +L+ N L I
Sbjct: 186 DVSQN------KLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLT-EID--VTP 231
Query: 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG-DLSEMIQNLSGGCTMNSLE 349
+ L + + N L + + L L L DL+ Q +
Sbjct: 232 LTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKI 288
Query: 350 GVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKI 409
D+ + L +L + + LSQ KL L L T ++
Sbjct: 289 -----------KELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-EL 333
Query: 410 PLG--TQLQSFNAS 421
+ T+L+S +
Sbjct: 334 DVSHNTKLKSLSCV 347
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 4e-16
Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 43/298 (14%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLH 170
+ L LD N + ++L L+ S + ++ L L+
Sbjct: 144 VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCS-FNKITELD--VSQNKLLNRLN 197
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI 230
+ +N+ L L+ L LD S LT+ V L L L +
Sbjct: 198 CDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTEL 248
Query: 231 NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290
+ S++ + + TL +L +L+ N Q + +
Sbjct: 249 DVSTL------SKLTTLHCIQTDLLE-------IDLTHNTQLIYFQAEGCRKIKELDVTH 295
Query: 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG-DLSEMIQNLSGGCTMNSLE 349
L L + + + + L L L +L+ D+S L+
Sbjct: 296 NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTELDVSH----------NTKLK 342
Query: 350 GVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407
+ I +G +L E + ++L+ ++S G
Sbjct: 343 SLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 7e-16
Identities = 60/313 (19%), Positives = 102/313 (32%), Gaps = 51/313 (16%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLH 170
+L L LD N+ I L+ L L + T+L + L YL
Sbjct: 40 QLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTL-----DLSQNTNLTYLA 91
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI 230
+++ L +L ++ L+ L +L+ LTK V++ L L L I
Sbjct: 92 CDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI 142
Query: 231 NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290
+ S +T + LD N + L L+ FN + +
Sbjct: 143 DVSH------NTQLTELDCHLNKKITKLDVTPQTQL----TTLDCSFNKIT-ELD--VSQ 189
Query: 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350
L L +N + + + L L NKL+ ++ + L+ L
Sbjct: 190 NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLT------QLTY 237
Query: 351 VCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
N +T D+ S L L + L ID L+ +L ++
Sbjct: 238 FDCSVNPLT--ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD 292
Query: 411 LG--TQLQSFNAS 421
+ TQL +
Sbjct: 293 VTHNTQLYLLDCQ 305
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 50/281 (17%), Positives = 94/281 (33%), Gaps = 44/281 (15%)
Query: 144 YLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK 203
+ + + L+ L L NS++ + + L+ L L + N+T
Sbjct: 23 EVAAAFEMQATD-TISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNITT 78
Query: 204 SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWL 263
+++ +L L S L ++ T + L+ N L
Sbjct: 79 LD-----LSQNTNLTYLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKLD----- 122
Query: 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323
+ + + YLN N+L I L L N+ + L L
Sbjct: 123 VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177
Query: 324 PYNKLSG-DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLN 382
+NK++ D+S+ L + + N+IT DL L L N+L
Sbjct: 178 SFNKITELDVSQ----------NKLLNRLNCDTNNITK--LDLNQNIQLTFLDCSSNKLT 225
Query: 383 GTIDKSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNAS 421
ID ++ L +L N T ++ + ++L + +
Sbjct: 226 -EID--VTPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCI 262
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 2e-16
Identities = 48/330 (14%), Positives = 105/330 (31%), Gaps = 43/330 (13%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS------------------------ 148
+ LRHLDLS N F P+ + G+L++L +L LS
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178
Query: 149 CGTSLLKVPRPFQYLSGLVYLHLENSN--LFSLGSLQWLSHLSSL--RHLDLSYINLTKS 204
+ + LHL LFS+ ++ L L ++ L+ N +
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238
Query: 205 SDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL---PSSSVYP 261
+ + + +L + L ++ F +E L++ + + +
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298
Query: 262 WLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
+ +++ ++ S + + + L+ ++ S L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358
Query: 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGG-FSSLKILVLGENR 380
N + + + L L+ + L+ N + + ++ L +
Sbjct: 359 NFTQNVFTDSVFQGCSTLK------RLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVS 411
Query: 381 LN----GTIDKSLSQLLKLESLSLGRNSFT 406
LN D++ + + L+L N T
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 51/349 (14%), Positives = 110/349 (31%), Gaps = 29/349 (8%)
Query: 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRL 142
V L+L + + G + + HL N + + +L L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 143 RYLNLSCG----TSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHL--SSLRHLDL 196
+ N+ L+ L+ + L++ S++ + +L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 197 SYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPS 256
+ +T+ D + +LK+L++ S +++ + LS ++ P
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 257 SSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMC 316
+ + +LN N S+ + + L+ L L N L+ K
Sbjct: 344 IHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTK 400
Query: 317 SLNRLCLPYNKLSGDLSEMIQNLSGG--------------------CTMNSLEGVCLEGN 356
+++ L L+ S C ++ + L N
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460
Query: 357 DITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
I D+ +L+ L + N+L D +L L+ + L N +
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 58/323 (17%), Positives = 104/323 (32%), Gaps = 25/323 (7%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLH 170
L +LR L LS+N F+ L YL++S ++ ++ L +L
Sbjct: 74 FLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQNI-----SCCPMASLRHLD 127
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR-SLKTLVLHSCALPP 229
L ++ L + +L+ L L LS + VA L S L L S +
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKG 185
Query: 230 INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR-NIQYLNLGFNSLQGSIPEAF 288
S+ N T++ L N+L S V + L + + L + Q +
Sbjct: 186 GETESLQIPN--TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG-DLSEMIQNLSGGCTMNS 347
+L L +T +E + Y + ++E I + +
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303
Query: 348 LEGVCLE---GNDITGPLPDLG-GFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403
L+ + +E L F+ + I +L + L+ +N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363
Query: 404 SFTGKIPLG-----TQLQSFNAS 421
FT +LQ+
Sbjct: 364 VFT-DSVFQGCSTLKRLQTLILQ 385
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 54/300 (18%), Positives = 98/300 (32%), Gaps = 23/300 (7%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENS 174
+ L LS N +P+ LS LR L LS + + F + L YL + ++
Sbjct: 53 RTKALSLSQNSISELRMPDI-SFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHN 110
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234
L ++ ++SLRHLDLS+ N + L L L L + ++
Sbjct: 111 RLQNISC----CPMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165
Query: 235 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSL 294
+ H +LS LDL ++ N L+L F+ + + +L
Sbjct: 166 VAHLHLSCI--LLDLVSYHIKG---GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220
Query: 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD----LSEMIQNLSGGCTMNSLEG 350
L L++ +L + S ++ + L +E
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280
Query: 351 VCLEGNDITGPLP------DLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNS 404
+ + IT + SL I + + + S ++ L +
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFL 297
+L + L LS N++ S + + ++ L L N ++ S+ F L +L
Sbjct: 49 DLPPRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYL 105
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKL-SGDLSEMIQNLSGGCTMNSLEGVCLEGN 356
++ N L+ I M SL L L +N + + NL+ L + L
Sbjct: 106 DVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLT------KLTFLGLSAA 156
Query: 357 DITGPLPDLGGFSSLKI----LVLGENRLNGTIDKSLSQLLKLESLSLGRNS 404
DL + L + L L + G +SL Q+ L L +
Sbjct: 157 KFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLHLVFHP 205
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 60/328 (18%), Positives = 120/328 (36%), Gaps = 47/328 (14%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
I P L + + ++ L + L+ + + QYL+ L
Sbjct: 12 IFP-DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFG--TGVTTIEGVQYLNNL 65
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226
+ L L+++ + L L +L+ + L+LS L +A L+S+KTL L S
Sbjct: 66 IGLELKDNQ---ITDLAPLKNLTKITELELSGNPLKN----VSAIAGLQSIKTLDLTSTQ 118
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE 286
+ + + ++++ L L N + + S L L+ N+QYL++G + +
Sbjct: 119 I-----TDVTPLAGLSNLQVLYLDLNQITNISP---LAGLT-NLQYLSIGNAQVS-DL-T 167
Query: 287 AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346
+ L L N++ I + +L + L N+ I ++S +
Sbjct: 168 PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQ--------ISDVSPLANTS 217
Query: 347 SLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTID-KSLSQLLKLESLSLGRN-- 403
+L V L IT + ++L + + + I ++S S +L N
Sbjct: 218 NLFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275
Query: 404 --------SFTGKIPLGTQLQSFNASVY 423
+F + F+ +V
Sbjct: 276 SFINNVSYTFNQSVTFKNTTVPFSGTVT 303
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 3e-16
Identities = 46/226 (20%), Positives = 91/226 (40%), Gaps = 28/226 (12%)
Query: 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244
+ +L ++T + +L S+ ++ ++ + S+ ++
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDI-----KSVQGIQYLPNV 67
Query: 245 ETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNEL 304
L L+ N L + + P L NL N+ +L L N ++ + + + + L+ L L N +
Sbjct: 68 TKLFLNGNKL--TDIKP-LTNLK-NLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGI 121
Query: 305 EGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD 364
+ L L L NK++ I LS + L+ + LE N I+ +
Sbjct: 122 S--DINGLVHLPQLESLYLGNNKIT-----DITVLSR---LTKLDTLSLEDNQISD-IVP 170
Query: 365 LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
L G + L+ L L +N + + ++L+ L L+ L L K
Sbjct: 171 LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPI 214
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 3e-14
Identities = 45/263 (17%), Positives = 90/263 (34%), Gaps = 53/263 (20%)
Query: 138 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197
+ + NL S+ L+ + + NS++ S+ +Q +L ++ L L+
Sbjct: 19 AFAETIKDNLK-KKSVTDAV-TQNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLN 73
Query: 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS 257
LT + + L++L L L + + +L +L
Sbjct: 74 GNKLTD----IKPLTNLKNLGWLFLDENKI--------------KDLSSL----KDLK-- 109
Query: 258 SVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCS 317
++ L+L N + I + L LYL +N++ ++
Sbjct: 110 -----------KLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTK 154
Query: 318 LNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLG 377
L+ L L N+ I ++ + L+ + L N I+ L L G +L +L L
Sbjct: 155 LDTLSLEDNQ--------ISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELF 205
Query: 378 ENRLNGTIDKSLSQLLKLESLSL 400
S L+ ++
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKN 228
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 2e-12
Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 23/195 (11%)
Query: 111 LLKLHDLRHLDLSNNHFGG-SPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 169
+ L ++ L L+ N PL +L L +L L + + + L L L
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPL----TNLKNLGWLFLD-ENKIKDLS-SLKDLKKLKSL 114
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229
LE++ + + L HL L L L +T V+++L L TL L +
Sbjct: 115 SLEHNG---ISDINGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQI-- 165
Query: 230 INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ 289
S I T ++ L LS N++ S + L L N+ L L
Sbjct: 166 ---SDIVPLAGLTKLQNLYLSKNHI--SDLRA-LAGLK-NLDVLELFSQECLNKPINHQS 218
Query: 290 LMVSLRFLYLTSNEL 304
+V + T L
Sbjct: 219 NLVVPNTVKNTDGSL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 2e-12
Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 47/232 (20%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
+L+ + + +N+ I S+ QYL +
Sbjct: 37 VTQNELNSIDQIIANNSD---------IKSVQ------------------GIQYLPNVTK 69
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L L + L + L++L +L L L + + L+ LK+L L +
Sbjct: 70 LFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD----LSSLKDLKKLKSLSLEHNGI- 121
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
S I +E+L L +N + +V L L+ + L+L N + I
Sbjct: 122 ----SDINGLVHLPQLESLYLGNNKITDITV---LSRLT-KLDTLSLEDNQIS-DI-VPL 171
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLS 340
+ L+ LYL+ N + + + +L+ L L + NL
Sbjct: 172 AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 1e-11
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 238 FNLS--TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLR 295
F +L ++ + L+ +I + + ++ S+ + Q + ++
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVT---QNELN-SIDQIIANNSDIK-SV-QGIQYLPNVT 68
Query: 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEG 355
L+L N+L P + +L L L NK I++LS + L+ + LE
Sbjct: 69 KLFLNGNKLTDIKP--LTNLKNLGWLFLDENK--------IKDLSSLKDLKKLKSLSLEH 118
Query: 356 NDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG--T 413
N I+ + L L+ L LG N++ I LS+L KL++LSL N + +PL T
Sbjct: 119 NGISD-INGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQISDIVPLAGLT 175
Query: 414 QLQSFNAS 421
+LQ+ S
Sbjct: 176 KLQNLYLS 183
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 19/169 (11%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
I P L L +L L L N L + L +L+ L+L + + +L L
Sbjct: 80 IKP-LTNLKNLGWLFLDENKI--KDL-SSLKDLKKLKSLSLE-HNGISDIN-GLVHLPQL 133
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226
L+L N+ + + LS L+ L L L ++ +A L L+ L L
Sbjct: 134 ESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 186
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275
+ S + +++ L+L + + NL N
Sbjct: 187 I-----SDLRALAGLKNLDVLELFSQECLNKPIN-HQSNLVVPNTVKNT 229
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 19/200 (9%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPE--FIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGL 166
+ +L+ LDLS + + + LS L L L+ G + + F LS L
Sbjct: 47 SFFSFPELQVLDLSRCEI--QTIEDGAYQS-LSHLSTLILT-GNPIQSLALGAFSGLSSL 102
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK--SSDWFQVVAKLRSLKTLVLHS 224
L +NL SL + + HL +L+ L++++ + ++F + L +L+ L L S
Sbjct: 103 QKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYF---SNLTNLEHLDLSS 158
Query: 225 CALPPINPSSIWHF-NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS 283
+ I + + + +LDLS N + + + P F ++ L L N L+ S
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFK-EIRLKELALDTNQLK-S 214
Query: 284 IPE-AFQLMVSLRFLYLTSN 302
+P+ F + SL+ ++L +N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 26/224 (11%)
Query: 189 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247
S ++LDLS+ L S F L+ L L C + I + + + + TL
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQTIEDGA---YQSLSHLSTL 81
Query: 248 DLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNEL-E 305
L+ N + S+ F+ ++Q L +L S+ + +L+ L + N +
Sbjct: 82 ILTGNPI--QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138
Query: 306 GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE----GNDITGP 361
+P++F + +L L L NK+ ++ L + + L N +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------QMPLLNLSLDLSLNPMNF- 191
Query: 362 LPDLGGFS--SLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403
+ G F LK L L N+L D +L L+ + L N
Sbjct: 192 IQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFL 297
NL S + LDLS N L + + F +Q L+L +Q +I + A+Q + L L
Sbjct: 25 NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTL 81
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
LT N ++ F + SL +L L+ + I +L +L+ + + N
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNL 135
Query: 358 ITGPLPDLGGFSS---LKILVLGENRL----NGTIDKSLSQLLKLE-SLSLGRNSFTGKI 409
I FS+ L+ L L N++ + L Q+ L SL L N I
Sbjct: 136 IQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMN-FI 192
Query: 410 PLGT 413
G
Sbjct: 193 QPGA 196
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 7e-11
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 16/177 (9%)
Query: 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324
NL + + L+L FN L+ +F L+ L L+ E++ + + L+ L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRL- 381
N + LS SL+ + ++ L + +G +LK L + N +
Sbjct: 85 GNPIQSLALGAFSGLS------SLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137
Query: 382 NGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-----TQLQSFNASVYAGNPELCGLP 433
+ + + S L LE L L N I Q+ N S+ + +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 25/220 (11%)
Query: 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCAL 227
L L + L LGS L+ LDLS + D L L TL+L +
Sbjct: 32 NLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPI 88
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE- 286
+ F+ +S++ L + NL +S+ + + ++ LN+ N +Q S
Sbjct: 89 QSL-ALGA--FSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQ-SFKLP 142
Query: 287 -AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSL----NRLCLPYNKLSGDLSEMIQNLSG 341
F + +L L L+SN+++ + + L L N ++ + +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-- 200
Query: 342 GCTMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGEN 379
L+ + L+ N + +PD +SL+ + L N
Sbjct: 201 -----RLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 15/220 (6%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 168
A DL +++S N + +L +L + + +LL + FQ L L Y
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSY-INLTK-SSDWFQVVAKLRSLKTLVLHSCA 226
L + N+ + L + H LD+ IN+ + F ++ L L+
Sbjct: 109 LLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKNG 165
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE 286
+ I+ S+ FN + E +NNL + +F+ + L++ +
Sbjct: 166 IQEIHNSA---FNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSY 220
Query: 287 AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326
+ + LR + + +P K+ +L L Y
Sbjct: 221 GLENLKKLRARSTYNLKK---LPTLE-KLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 35/216 (16%), Positives = 69/216 (31%), Gaps = 13/216 (6%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENS 174
+ L F G L + +S L + F L L + +E +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234
N + + +L +L++L +S + V K+ SL+ ++L I +
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKH----LPDVHKIHSLQKVLLDIQDNINI--HT 143
Query: 235 IWH---FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291
I LS L L+ N + ++ FN ++ + N+L+ + F
Sbjct: 144 IERNSFVGLSFESVILWLNKNGI--QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNK 327
L ++ + + L K
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 43/264 (16%), Positives = 81/264 (30%), Gaps = 46/264 (17%)
Query: 147 LSC-GTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS- 204
C + + ++P + L + L + S L +++S ++ +
Sbjct: 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVI 70
Query: 205 -SDWFQVVAKLRSLKTL-VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262
+D F L L + + + L INP F +++ L +S+ + +
Sbjct: 71 EADVFS---NLPKLHEIRIEKANNLLYINPE---AFQNLPNLQYLLISNTGI--KHLPDV 122
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPE-AFQ-LMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
S L++ N +I +F L L+L N ++ I L+
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDE 181
Query: 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENR 380
L L N ++ L G S IL + R
Sbjct: 182 LNLSDNNN-------LEELPNDV---------------------FHGASGPVILDISRTR 213
Query: 381 LNGTIDKSLSQLLKLESLSLGRNS 404
++ L L KL + S
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLK 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 12/195 (6%)
Query: 215 RSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274
R+ L L I + F+ +E +++S N++ + +F+ + +
Sbjct: 30 RNAIELRFVLTKLRVIQKGA---FSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIR 85
Query: 275 L-GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKF-FGKMCSLNRLCLPYNKLSGDL 332
+ N+L PEAFQ + +L++L +++ ++ +P L + N +
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTI 144
Query: 333 SEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGENRLNGTIDKSLSQ 391
N G + + L N I G ++ + N L +
Sbjct: 145 ER---NSFVGLSFE-SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200
Query: 392 LLKLESLSLGRNSFT 406
L + R
Sbjct: 201 ASGPVILDISRTRIH 215
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 25/180 (13%)
Query: 243 SIETLDLSDNNL---PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYL 299
S ++ + PS +L RN L L+ AF L + +
Sbjct: 10 SNRVFLCQESKVTEIPS--------DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61
Query: 300 TSNELEGGIPKF-FGKMCSLNRLCLP-YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
+ N++ I F + L+ + + N L E QNL +L+ + +
Sbjct: 62 SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP------NLQYLLISNTG 115
Query: 358 ITGPLPDLGGFSS--LKILVLGENRLNGTI-DKSLSQL-LKLESLSLGRNSFTGKIPLGT 413
I LPD+ S +L + +N TI S L + L L +N +I
Sbjct: 116 IKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 17/173 (9%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSG-LV 167
A L +L++L +SN P I SL L++ ++ + F LS V
Sbjct: 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGLSFESV 157
Query: 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCA 226
L L + + + + + NL + +D F L +
Sbjct: 158 ILWLNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFH---GASGPVILDISRTR 213
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNS 279
+ + + + + + P L L + +L + S
Sbjct: 214 IHSLPSYGLENL---KKLRARSTYNL-----KKLPTLEKLV-ALMEASLTYPS 257
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 54/331 (16%), Positives = 97/331 (29%), Gaps = 67/331 (20%)
Query: 107 ISPALLKLHDLRHLDLSNNHFG---GSPLPEFIGSLSRLRYLNLSC---GTSLLKVPRPF 160
+ LL+ ++ + LS N G L E I S L S G ++P
Sbjct: 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83
Query: 161 QYLSG-------LVYLHLENSNLFSLGSL---QWLSHLSSLRHLDLSYINLTKSSDWFQV 210
+ L L + L ++ +LS + L HL L L +
Sbjct: 84 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA--GAK 141
Query: 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW--LFNLSR 268
+A+ AL + + + ++ N L + S+ W F R
Sbjct: 142 IAR------------ALQELAVNKKAKNA--PPLRSIICGRNRLENGSMKEWAKTFQSHR 187
Query: 269 NIQYLNLGFNSL-----QGSIPEAFQLMVSLRFLYLTSNEL--EGG--IPKFFGKMCSLN 319
+ + + N + + + E L+ L L N G + +L
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247
Query: 320 RLCLPYNKLSGD----LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGG-------- 367
L L LS + + L+ + L+ N+I
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSK----LENIGLQTLRLQYNEIE----LDAVRTLKTVID 299
Query: 368 --FSSLKILVLGENRLN--GTIDKSLSQLLK 394
L L L NR + + + ++
Sbjct: 300 EKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 53/283 (18%), Positives = 93/283 (32%), Gaps = 43/283 (15%)
Query: 84 HVKVLNLRRSDDENSRGTVLKG--TISPALLKLHDLRHLDLSNNHF---GGSPLPEFIGS 138
+++ + + + + ALLK L + LS+N F PL +F+
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 139 LSRLRYLNLS-CGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197
+ L +L L G P+ ++ L L + + LR +
Sbjct: 121 HTPLEHLYLHNNGLG----PQAGAKIA---------RALQELAVNKKAKNAPPLRSIICG 167
Query: 198 YINLTKSS--DWFQVVAKLRSLKTLVLHSCALPPINPSSIWH-----FNLSTSIETLDLS 250
L S +W + R L T+ + I P I H ++ LDL
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNG---IRPEGIEHLLLEGLAYCQELKVLDLQ 224
Query: 251 DNNLPSSSVYPWLFNLSRN--IQYLNLGFNSLQG----SIPEAFQLMV--SLRFLYLTSN 302
DN L ++ L L L ++ +AF + L+ L L N
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284
Query: 303 EL--EGGIP---KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLS 340
E+ + KM L L L N+ + +++ +
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIR 326
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 27/202 (13%), Positives = 57/202 (28%), Gaps = 44/202 (21%)
Query: 243 SIETLDLSDNNLPSSSVYPWLFNLSRN--IQYLNLGFNSL--QG--SIPEAFQLMVSLRF 296
SIE L + + + L + ++ + L N++ + + E L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 297 LYLTSN--------ELEGG--IPKFFGKMCSLNRLCLPYNKLSGD----LSEMIQNLSGG 342
+ E + + K L+ + L N L + +
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK---- 120
Query: 343 CTMNSLEGVCLEGNDIT--------------GPLPDLGGFSSLKILVLGENRLNGTIDKS 388
LE + L N + L+ ++ G NRL K
Sbjct: 121 --HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178
Query: 389 LSQLLK----LESLSLGRNSFT 406
++ + L ++ + +N
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIR 200
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 41/202 (20%)
Query: 242 TSIETLDLSDNNLPSSSVYPWLFNLSRN--IQYLNLGFNSLQ----------GSIPEAFQ 289
S++ + LS N + + + N++ ++ + +A
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91
Query: 290 LMVSLRFLYLTSNEL--EGGIP--KFFGKMCSLNRLCLPYNKLSGD----LSEMIQNLSG 341
L + L+ N P F K L L L N L ++ +Q L+
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151
Query: 342 GCTM---NSLEGVCLEGNDITGPLPD---------LGGFSSLKILVLGENRLNGT-IDKS 388
L + N + + L + + +N + I+
Sbjct: 152 NKKAKNAPPLRSIICGRNRLE----NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 389 LSQLLK----LESLSLGRNSFT 406
L + L L+ L L N+FT
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFT 229
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 64/339 (18%), Positives = 108/339 (31%), Gaps = 71/339 (20%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
+S L L L+ L LS+N G + L L L L K
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL-------LDPQCRLEK----------- 146
Query: 167 VYLHLENSNLFSLGSL---QWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL-----RSLK 218
L LE +L + L + L +S ++ ++ +V+ + L+
Sbjct: 147 --LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG--VRVLCQGLKDSPCQLE 202
Query: 219 TLVLHSCALPPINPSSI-WHFNLSTSIETLDLSDNNLPSSSV---YPWLFNLSRNIQYLN 274
L L SC + N + S+ L L N L + P L + S ++ L
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262
Query: 275 LGFNSLQ----GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM-----CSLNRLCLPY 325
+ + G + + SL+ L L NEL + + C L L +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322
Query: 326 NKLSGD----LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLG----------GFSSL 371
+ S ++ L + + N + D G S L
Sbjct: 323 CSFTAACCSHFSSVLAQNR------FLLELQISNNRLE----DAGVRELCQGLGQPGSVL 372
Query: 372 KILVLGENRLNGTIDKSLSQLLK----LESLSLGRNSFT 406
++L L + ++ + SL+ L L L L N
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 55/324 (16%), Positives = 105/324 (32%), Gaps = 63/324 (19%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSN 175
D++ LD+ + E + L + + + L L +
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-------------------DCGLTEAR 44
Query: 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL-----RSLKTLVLHSCALPPI 230
+ S L +L L+L L V + ++ L L +C L
Sbjct: 45 CKDISSA--LRVNPALAELNLRSNELGDVG--VHCVLQGLQTPSCKIQKLSLQNCCLTGA 100
Query: 231 NPSSIWH-FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN---IQYLNLGFNSLQ----G 282
+ +++ L LSDN L + + L ++ L L + SL
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160
Query: 283 SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM-----CSLNRLCLPYNKLSGDLSEMIQ 337
+ + + L +++N++ + + C L L L ++ S+ +
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCR 217
Query: 338 NLSGGCTMN-SLEGVCLEGNDITGPLPDLG----------GFSSLKILVLGENRLNGTID 386
+L G SL + L N + D+G S L+ L + E +
Sbjct: 218 DLCGIVASKASLRELALGSNKLG----DVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273
Query: 387 KSLSQLLK----LESLSLGRNSFT 406
L ++L+ L+ LSL N
Sbjct: 274 GDLCRVLRAKESLKELSLAGNELG 297
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 59/335 (17%), Positives = 96/335 (28%), Gaps = 77/335 (22%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLS----RLRYLNLS-CGTSLLKVPRPFQ 161
++ L D + L +SNN + + L +L L L CG + +
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT----SDNCR 217
Query: 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR---SLK 218
L G+ ++ +SLR L L L L L+
Sbjct: 218 DLCGI------------------VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 219 TLVLHSCALPPINPSSIWHF----NLSTSIETLDLSDNNLPSSSVY---PWLFNLSRNIQ 271
TL + C I S++ L L+ N L L ++
Sbjct: 260 TLWIWEC---GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316
Query: 272 YLNLGFNSLQG----SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM-----CSLNRLC 322
L + S L L +++N LE + + L L
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376
Query: 323 LPYNKLS----GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF---------- 368
L +S L+ + SL + L N + D G
Sbjct: 377 LADCDVSDSSCSSLAATLLANH------SLRELDLSNNCLG----DAGILQLVESVRQPG 426
Query: 369 SSLKILVLGENRLNGTIDKSLSQLLK----LESLS 399
L+ LVL + + ++ L L K L +S
Sbjct: 427 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 63/359 (17%), Positives = 106/359 (29%), Gaps = 69/359 (19%)
Query: 114 LHDLRHLDLSNNHF---GGSPLPEFIGSLSRLRYLNLSC------GTSL----LKVPRPF 160
L + + L + + + L LNL G L+ P
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-- 84
Query: 161 QYLSGLVYLHLENSNL-----FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215
+ L L+N L L S L L +L+ L LS L + + L
Sbjct: 85 ---CKIQKLSLQNCCLTGAGCGVLSST--LRTLPTLQELHLSDNLLG-DAGLQLLCEGLL 138
Query: 216 S----LKTLVLHSCALPPINPSSIWH-FNLSTSIETLDLSDNNLPSSSVY---PWLFNLS 267
L+ L L C+L + + + L +S+N++ + V L +
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198
Query: 268 RNIQYLNLGFNSLQ----GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM-----CSL 318
++ L L + + SLR L L SN+L L
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258
Query: 319 NRLCLPYNKLSGD----LSEMIQNLSGGCTMNSLEGVCLEGNDITGP--------LPDLG 366
L + ++ L +++ SL+ + L GN++ L + G
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKE------SLKELSLAGNELGDEGARLLCETLLEPG 312
Query: 367 GFSSLKILVLGENRLNGTIDKSLSQLLK----LESLSLGRNSFT--GKIPLGTQLQSFN 419
L+ L + S +L L L + N G L L
Sbjct: 313 --CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 34/245 (13%)
Query: 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSI-WHFNLSTSIETL 247
++ LD+ L+ + W +++ L+ + + L C L I ++ ++ L
Sbjct: 3 LDIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 248 DLSDNNLPSSSVYPW---LFNLSRNIQYLNLGFNSLQ----GSIPEAFQLMVSLRFLYLT 300
+L N L V+ L S IQ L+L L G + + + +L+ L+L+
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 301 SNEL-EGGIPKFFGKM----CSLNRLCLPYNKLS----GDLSEMIQNLSGGCTMNSLEGV 351
N L + G+ + C L +L L Y LS L+ +++ + +
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP------DFKEL 175
Query: 352 CLEGNDITGP-LPDLGGF-----SSLKILVLGENRLNGTIDKSLSQLLK----LESLSLG 401
+ NDI + L L+ L L + + L ++ L L+LG
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 402 RNSFT 406
N
Sbjct: 236 SNKLG 240
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 30/189 (15%)
Query: 240 LSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ----GSIPEAFQLMVSLR 295
+S I++LD+ L + L L + Q + L L I A ++ +L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 296 FLYLTSNELEGGIPKFFGKM-----CSLNRLCLPYNKLS----GDLSEMIQNLSGGCTMN 346
L L SNEL + C + +L L L+ G LS ++ L
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP------ 113
Query: 347 SLEGVCLEGNDITGP-LPDLGGF-----SSLKILVLGENRLNGTIDKSLSQLLK----LE 396
+L+ + L N + L L L+ L L L+ + L+ +L+ +
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 397 SLSLGRNSF 405
L++ N
Sbjct: 174 ELTVSNNDI 182
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 6e-13
Identities = 54/299 (18%), Positives = 102/299 (34%), Gaps = 85/299 (28%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
++ L L+ + S LP+ + ++ L ++ +L+ +P + + L Y
Sbjct: 53 LKECLINQFSELQLNRLNL--SSLPDNLPP--QITVLEIT-QNALISLP---ELPASLEY 104
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L ++ L +L L +SL+HLD+ +L L
Sbjct: 105 LDACDNRLSTLPEL-----PASLKHLDVDN-------------NQLTML----------- 135
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
P +E ++ +N L L L +++ L++ N L +PE
Sbjct: 136 ---PELP------ALLEYINADNNQLTM------LPELPTSLEVLSVRNNQLT-FLPE-- 177
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
L SL L +++N LE +P + + +
Sbjct: 178 -LPESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFR---------------------- 213
Query: 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406
N IT +P+ + ++L +N L+ I +SLSQ R F+
Sbjct: 214 ----CRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 1e-12
Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 33/224 (14%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176
+ L+++ N LPE SL YL+ L +P + + L +L ++N+ L
Sbjct: 82 ITVLEITQNAL--ISLPELPASL---EYLDAC-DNRLSTLP---ELPASLKHLDVDNNQL 132
Query: 177 FSL----GSLQWLS-----------HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221
L L++++ +SL L + LT + SL+ L
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL------PESLEALD 186
Query: 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
+ + L + + + + + +N + + + + +L + L N L
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRI--THIPENILSL-DPTCTIILEDNPLS 243
Query: 282 GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPY 325
I E+ + + + L +
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 29/193 (15%), Positives = 71/193 (36%), Gaps = 13/193 (6%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 168
A L ++ + +S + +LS++ ++ + +L + + L L +
Sbjct: 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLHSCA 226
L + N+ L L + L+++ S + FQ + TL L++
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNG 167
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLF-NLSRNIQYLNLGFNSLQGSIP 285
+ + FN T ++ + L+ N + + F + L++ S+ ++P
Sbjct: 168 FTSVQGYA---FNG-TKLDAVYLNKNKY-LTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221
Query: 286 -EAFQLMVSLRFL 297
+ + + L
Sbjct: 222 SKGLEHLKELIAR 234
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 26/226 (11%)
Query: 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLD 248
++ ++ ++ + S +TL L L I + + +I +
Sbjct: 11 HQEEDFRVTCKDIQ------RIPSLPPSTQTLKLIETHLRTIPSHAFSNL---PNISRIY 61
Query: 249 LSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP-EAFQLMVSLRFLYLTSNELEGG 307
+S + + F + ++ + I +A + + L+FL + + L+
Sbjct: 62 VSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-M 119
Query: 308 IP--KFFGKMCSLNRLCLPYNKLSGDLSE-MIQNLSGGCTMNSLEGVCLEGNDITGPLPD 364
P L + N + Q L N + L N T +
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----NETLTLKLYNNGFTS-VQG 173
Query: 365 LGGFSSLKI--LVLGENRLNGTIDK-SLSQLL-KLESLSLGRNSFT 406
F+ K+ + L +N+ IDK + + L + + S T
Sbjct: 174 -YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-12
Identities = 25/172 (14%), Positives = 65/172 (37%), Gaps = 17/172 (9%)
Query: 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQ 271
A++ SL + L + + + + + +I+ L +++ + + + + LS N++
Sbjct: 41 AQMNSLTYITLANINV-----TDLTGIEYAHNIKDLTINNIHATNYNP---ISGLS-NLE 91
Query: 272 YLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331
L + + + SL L ++ + + I + +N + L YN
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA--- 148
Query: 332 LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNG 383
I ++ T+ L+ + ++ + + + F L L + G
Sbjct: 149 ----ITDIMPLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 25/198 (12%), Positives = 62/198 (31%), Gaps = 24/198 (12%)
Query: 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS--RN 269
+ ++ +L + I + + S+ + L++ N+ + + N
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQM------NSLTYITLANINVTDLT------GIEYAHN 67
Query: 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
I+ L + + + +L L + ++ + SL L + ++
Sbjct: 68 IKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSL 389
+ I L + + L N + L LK L + + ++ + +
Sbjct: 126 DSILTKINTLP------KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY--RGI 177
Query: 390 SQLLKLESLSLGRNSFTG 407
KL L + G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 6e-10
Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 15/169 (8%)
Query: 136 IGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLD 195
++ L Y+ L+ + +Y + L + N + + +S LS+L L
Sbjct: 40 EAQMNSLTYITLAN--INVTDLTGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLR 94
Query: 196 LSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLP 255
+ ++T SD ++ L SL L + + S + N + ++DLS N
Sbjct: 95 IMGKDVT--SDKIPNLSGLTSLTLLDISHS---AHDDSILTKINTLPKVNSIDLSYNGA- 148
Query: 256 SSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNEL 304
+ + P L L ++ LN+ F+ + + L LY S +
Sbjct: 149 ITDIMP-LKTLP-ELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-09
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350
M SL ++ L + + ++ L + + +SG +++LE
Sbjct: 43 MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN-----YNPISG---LSNLER 92
Query: 351 VCLEGNDITG-PLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKI 409
+ + G D+T +P+L G +SL +L + + + +I ++ L K+ S+ L N I
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 410 -PLG--TQLQSFNAS 421
PL +L+S N
Sbjct: 153 MPLKTLPELKSLNIQ 167
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 9e-12
Identities = 36/166 (21%), Positives = 57/166 (34%), Gaps = 9/166 (5%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHLENS 174
LDLS+N+ L+ L L LS L + F + L YL L ++
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPS 233
+L +L S L +L L L ++ + F+ + L+ L L +
Sbjct: 99 HLHTLDEFL-FSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQISRFPVE 154
Query: 234 SIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNS 279
I N + LDLS N L + L ++
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKL--KKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 17/173 (9%)
Query: 189 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247
S LDLS+ NL++ ++W +L +L +L+L L I+ + F ++ L
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEA---FVPVPNLRYL 93
Query: 248 DLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEG 306
DLS N+L ++ +LF+ + ++ L L N + + AF+ M L+ LYL+ N++
Sbjct: 94 DLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR 150
Query: 307 GIPKFFG---KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGN 356
+ K+ L L L NKL +Q L G+ L N
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA----WVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 41/179 (22%), Positives = 63/179 (35%), Gaps = 27/179 (15%)
Query: 245 ETLDLSDNNL---PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLT 300
L S L P +L L+L N+L E + +L L L+
Sbjct: 21 NILSCSKQQLPNVPQ--------SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS 72
Query: 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360
N L + F + +L L L N L + +L +LE + L N I
Sbjct: 73 HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ------ALEVLLLYNNHIVV 126
Query: 361 PLPD--LGGFSSLKILVLGENRL----NGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT 413
+ + L+ L L +N++ I ++L KL L L N K+PL
Sbjct: 127 -VDRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLK-KLPLTD 182
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 5e-10
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 12/164 (7%)
Query: 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVL 222
S L L ++NL L + + L++L L LS+ +L SS+ F + +L+ L L
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDL 95
Query: 223 HSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG 282
S L ++ F+ ++E L L +N++ V F +Q L L N +
Sbjct: 96 SSNHLHTLDEFL---FSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISR 150
Query: 283 SIPEAFQLMV---SLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323
E + L L L+SN+L+ K+ + + L
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 12/200 (6%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPE--FIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGL 166
+L +L L LS+NH + + F+ + LRYL+LS L + F L L
Sbjct: 59 TPTRLTNLHSLLLSHNHL--NFISSEAFVP-VPNLRYLDLS-SNHLHTLDEFLFSDLQAL 114
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSC 225
L L N+++ + ++ L+ L LS +++ + + KL L L L S
Sbjct: 115 EVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN--LSRNIQYLNLGFNSLQGS 283
L + + + + L L +N L LF+ R + + L
Sbjct: 174 KLKKLPLTDLQKLP-AWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM 232
Query: 284 IPEAFQLMVSLRFLYLTSNE 303
+ + SL F + +
Sbjct: 233 HSKKLHNIFSLDFFNCSEYK 252
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 106 TISP-ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYL 163
IS A + + +LR+LDLS+NH F L L L L ++ V R F+ +
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLY-NNHIVVVDRNAFEDM 135
Query: 164 SGLVYLHLENSNLFSL--GSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTL 220
+ L L+L + + ++ + L L LDLS L K Q + L
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV-KNGL 194
Query: 221 VLHS 224
LH+
Sbjct: 195 YLHN 198
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 45/263 (17%), Positives = 90/263 (34%), Gaps = 53/263 (20%)
Query: 138 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197
+ + NL + L+ + + NS++ S+ +Q +L ++ L L+
Sbjct: 22 AFAETIKDNLKK--KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLN 76
Query: 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS 257
LT + +A L++L L L + + +L +L
Sbjct: 77 GNKLTD----IKPLANLKNLGWLFLDENKV--------------KDLSSL----KDLK-- 112
Query: 258 SVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCS 317
++ L+L N + S + L LYL +N++ ++
Sbjct: 113 -----------KLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTK 157
Query: 318 LNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLG 377
L+ L L N+ I ++ + L+ + L N I+ L L G +L +L L
Sbjct: 158 LDTLSLEDNQ--------ISDIVPLAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELF 208
Query: 378 ENRLNGTIDKSLSQLLKLESLSL 400
S L+ ++
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKN 231
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 51/301 (16%), Positives = 99/301 (32%), Gaps = 55/301 (18%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
+L+ + + +N+ I S+ QYL +
Sbjct: 40 VTQNELNSIDQIIANNSD---------IKSVQ------------------GIQYLPNVTK 72
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L L + L + L++L +L L L + + L+ LK+L L +
Sbjct: 73 LFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSLEHNGI- 124
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
S I +E+L L +N + +V L L+ + L+L N + I
Sbjct: 125 ----SDINGLVHLPQLESLYLGNNKITDITV---LSRLT-KLDTLSLEDNQIS-DI-VPL 174
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
+ L+ LYL+ N + + + +L+ L L + NL T+ +
Sbjct: 175 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
Query: 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408
+G + I+ D G + + + Q + + F G+
Sbjct: 233 DGSLVTPEIIS----DDGDYEKPNVKWHLPE-FTNEVSFIFYQPVTIGKAKA---RFHGR 284
Query: 409 I 409
+
Sbjct: 285 V 285
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 263 LFNLSR--NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
+F+ NL S+ ++ + S+ + +++++ + + ++ +
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTK 72
Query: 321 LCLPYNKLSGDLSEM---------------IQNLSGGCTMNSLEGVCLEGNDITGPLPDL 365
L L NKL+ D+ + +++LS + L+ + LE N I+ + L
Sbjct: 73 LFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-INGL 130
Query: 366 GGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNAS 421
L+ L LG N++ T LS+L KL++LSL N + +PL T+LQ+ S
Sbjct: 131 VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 5e-11
Identities = 46/212 (21%), Positives = 71/212 (33%), Gaps = 20/212 (9%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENSN 175
++ + P L+LS L + L L+L+ +
Sbjct: 12 HLEVNCDKRNLTALP----PDLPKDTTILHLS-ENLLYTFSLATLMPYTRLTQLNLDRA- 65
Query: 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSI 235
L LQ L L LDLS+ L Q L +L L + L + +
Sbjct: 66 --ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGA- 119
Query: 236 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSL 294
++ L L N L ++ P L + ++ L+L N+L +P + +L
Sbjct: 120 --LRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174
Query: 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326
L L N L IPK F L L N
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 7e-11
Identities = 49/201 (24%), Positives = 71/201 (35%), Gaps = 27/201 (13%)
Query: 238 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFL 297
+ S ++ NL +++ P +L ++ L+L N L L L
Sbjct: 6 VSKVASHLEVNCDKRNL--TALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
L EL + G + L L L +N+L L + Q L +L + + N
Sbjct: 61 NLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP------ALTVLDVSFNR 111
Query: 358 ITGPLPD--LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQL 415
+T LP L G L+ L L N L L+ KLE LSL N L
Sbjct: 112 LTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------NL 160
Query: 416 QSFNASVYAGNPELCGLPLPN 436
A + G L L L
Sbjct: 161 TELPAGLLNGLENLDTLLLQE 181
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 16/175 (9%)
Query: 106 TISP-ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 164
T S L+ L L+L + L G+L L L+LS L +P Q L
Sbjct: 45 TFSLATLMPYTRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLS-HNQLQSLPLLGQTLP 100
Query: 165 GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLH 223
L L + + L SL L L L L+ L L L L+ L L
Sbjct: 101 ALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLL---TPTPKLEKLSLA 156
Query: 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN 278
+ L + P+ + N +++TL L +N+L ++ F + + L N
Sbjct: 157 NNNLTEL-PAGL--LNGLENLDTLLLQENSL--YTIPKGFFGSH-LLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 23/157 (14%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLV 167
L L LDLS+N LP +L L L++S L +P + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQ 127
Query: 168 YLHLENSNLFSL--GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
L+L+ + L +L G L+ L L L+ NLT+ ++ L +L TL+L
Sbjct: 128 ELYLKGNELKTLPPGL---LTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQEN 182
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262
+L I P + S + L N PW
Sbjct: 183 SLYTI-PKGFFG---SHLLPFAFLHGN--------PW 207
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSN 175
+ +L + S + + S +K + QYL + YL L +
Sbjct: 20 ETIKANLKKKSV--TDAVTQNELNSIDQ---IIANNSDIKSVQGIQYLPNVRYLALGGNK 74
Query: 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSI 235
L + +L+ L++L +L L+ L + V KL +LK LVL L + P +
Sbjct: 75 LHDISALK---ELTNLTYLILTGNQLQSLPN--GVFDKLTNLKELVLVENQLQSL-PDGV 128
Query: 236 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSL 294
F+ T++ L+L+ N L S+ +F+ N+ L+L +N LQ S+PE F + L
Sbjct: 129 --FDKLTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQL 183
Query: 295 RFLYLTSNEL 304
+ L L N+L
Sbjct: 184 KDLRLYQNQL 193
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 178 SLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWH 237
S+ + L+S+ + + ++ + L +++ L L L I
Sbjct: 30 SVTDAVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGNKL-----HDISA 80
Query: 238 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRF 296
T++ L L+ N L S+ +F+ N++ L L N LQ S+P+ F + +L +
Sbjct: 81 LKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137
Query: 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
L L N+L+ F K+ +L L L YN+L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 34/244 (13%)
Query: 159 PFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 218
P L+ V +L ++ L S LS +++ + N+ + +LK
Sbjct: 14 PDPGLANAVKQNLGKQSVTDLVSQ---KELSGVQNFNGDNSNIQS----LAGMQFFTNLK 66
Query: 219 TLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN 278
L L + ++P +L T +E L ++ N L + + P + L L N
Sbjct: 67 ELHLSHNQISDLSPLK----DL-TKLEELSVNRNRLKNLNGIPSA-----CLSRLFLDNN 116
Query: 279 SLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQN 338
L ++ + +L L + +N+L+ G + L L L N+ I N
Sbjct: 117 EL--RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNE--------ITN 164
Query: 339 LSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTI--DKSLSQLLKLE 396
G + + + L G + L I ++ +G +S
Sbjct: 165 TGGLTRLKKVNWIDLTGQKCV--NEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYV 221
Query: 397 SLSL 400
+
Sbjct: 222 DGCV 225
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 25/198 (12%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
+ P L + +L LS ++ N S ++ Q+ + L
Sbjct: 12 VFP-DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDN--SNIQSLAGMQFFTNL 65
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226
LHL ++ + L L L+ L L ++ L + L L L +
Sbjct: 66 KELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNG-----IPSACLSRLFLDNNE 117
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE 286
L + +L ++E L + +N L S+ L LS ++ L+L N + +
Sbjct: 118 LRDTDSLI----HL-KNLEILSIRNNKL--KSIVM-LGFLS-KLEVLDLHGNEIT-NT-G 166
Query: 287 AFQLMVSLRFLYLTSNEL 304
+ + ++ LT +
Sbjct: 167 GLTRLKKVNWIDLTGQKC 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 22/194 (11%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLH 170
+L +++ + N++ L + + L+ L+LS + + P + L+ L L
Sbjct: 37 QKELSGVQNFNGDNSNI--QSL-AGMQFFTNLKELHLS-HNQISDLS-PLKDLTKLEELS 91
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI 230
+ + L +L + L L L L + + L++L+ L + + L
Sbjct: 92 VNRNRLKNLNGIPSA----CLSRLFLDNNELRDTDS----LIHLKNLEILSIRNNKL--- 140
Query: 231 NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290
SI + +E LDL N + ++ L L + +++L +
Sbjct: 141 --KSIVMLGFLSKLEVLDLHGNEI--TNTGG-LTRLK-KVNWIDLTGQKCVNEPVKYQPE 194
Query: 291 MVSLRFLYLTSNEL 304
+ +
Sbjct: 195 LYITNTVKDPDGRW 208
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 39/171 (22%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFL 297
NL +I + L N + + P F+ + ++ ++L N + + AFQ + SL L
Sbjct: 29 NLPETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL 85
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
L N++ F + SL L L NK++
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINC--------------------------- 118
Query: 358 ITGPLPDLGGFS---SLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405
L F +L +L L +N+L + S L ++++ L +N F
Sbjct: 119 ----LRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
Query: 189 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247
++ + L + F + L+ + L + + + P + F S+ +L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFS---PYKKLRRIDLSNNQISELAPDA---FQGLRSLNSL 85
Query: 248 DLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEG 306
L N + + + LF ++Q L L N + + AFQ + +L L L N+L+
Sbjct: 86 VLYGNKI--TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 307 GIPKFFGKMCSLNRLCLPYN 326
F + ++ + L N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 110 ALLKLHDLRHLDLSNNHFGGSPLPE--FIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGL 166
A LR +DLSNN S L F G L L L L G + ++P F+ L L
Sbjct: 51 AFSPYKKLRRIDLSNNQI--SELAPDAFQG-LRSLNSLVLY-GNKITELPKSLFEGLFSL 106
Query: 167 VYLHLENSNLFSL--GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHS 224
L L + + L + Q L +L L L L + + LR+++T+ L
Sbjct: 107 QLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQ 161
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 46/326 (14%), Positives = 100/326 (30%), Gaps = 19/326 (5%)
Query: 94 DDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSL 153
E + +V ++ L + P+ S + +L +
Sbjct: 251 SREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLN 310
Query: 154 LKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 213
++P+ + + L W ++ L +++ KS+ +
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELES 370
Query: 214 LRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYL 273
+ L+ L + + L +++ L L S + + YL
Sbjct: 371 CKELQELEPEN------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM--RAAYL 422
Query: 274 NLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLS 333
+ + +R L+L +L + ++ + L L +N+L L
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALP 479
Query: 334 EMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNG-TIDKSLSQL 392
+ L LE + N + + + L+ L+L NRL + L
Sbjct: 480 PALAALR------CLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSC 532
Query: 393 LKLESLSLGRNSFTGKIPLGTQLQSF 418
+L L+L NS + + +L
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-08
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 168
L +L + HLDLS+N LP + +L L L S + L+ L L
Sbjct: 457 CHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASD--NALENVDGVANLPRLQE 512
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTLV 221
L L N+ L ++Q L L L+L +L + ++ L S+ +++
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-05
Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 36/175 (20%)
Query: 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYL 145
V +R + ++ R L ++ D+R L L++ + + L + +L
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENS-VLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHL 468
Query: 146 NLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSS 205
+LS L +P L L L ++ L ++ + ++L L+ L L L +S+
Sbjct: 469 DLS-HNRLRALPPALAALRCLEVLQASDNALENVDGV---ANLPRLQELLLCNNRLQQSA 524
Query: 206 DWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVY 260
+ L S L L+L N+L
Sbjct: 525 A----IQPLVSCPRL------------------------VLLNLQGNSLCQEEGI 551
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 29/204 (14%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFL 297
N+ + LDL N L SS+ F+ ++ L L N LQ ++P F+ + +L L
Sbjct: 34 NIPADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC--TMNSLEGVCLEG 355
++T N+L+ F ++ +L L L N+ +++L ++ L + L
Sbjct: 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQ--------LKSLPPRVFDSLTKLTYLSLGY 142
Query: 356 NDITGPLPDLGGF---SSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412
N++ LP G F +SLK L L N+L + + +L +L++L L N
Sbjct: 143 NELQS-LPK-GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN--------- 191
Query: 413 TQLQSFNASVYAGNPELCGLPLPN 436
QL+ + +L L L
Sbjct: 192 -QLKRVPEGAFDSLEKLKMLQLQE 214
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 7e-09
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 160 FQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT 219
F L+ L L+L ++ L +L L +L L ++ L V +L +L
Sbjct: 57 FHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPI--GVFDQLVNLAE 113
Query: 220 LVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNS 279
L L L + P + F+ T + L L N L S+ +F+ +++ L L N
Sbjct: 114 LRLDRNQLKSL-PPRV--FDSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQ 168
Query: 280 LQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326
L+ +PE AF + L+ L L +N+L+ F + L L L N
Sbjct: 169 LK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 9e-09
Identities = 44/191 (23%), Positives = 63/191 (32%), Gaps = 35/191 (18%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLE 172
+L LR L L++N P F L L L ++ L +P
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKE-LKNLETLWVT-DNKLQALP--------------- 101
Query: 173 NSNLFSLGSLQWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPIN 231
+F L +L L L L F L L L L L +
Sbjct: 102 -IGVF--------DQLVNLAELRLDRNQLKSLPPRVF---DSLTKLTYLSLGYNELQSLP 149
Query: 232 PSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291
F+ TS++ L L +N L V F+ ++ L L N L+ AF +
Sbjct: 150 KGV---FDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Query: 292 VSLRFLYLTSN 302
L+ L L N
Sbjct: 205 EKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 54/206 (26%), Positives = 78/206 (37%), Gaps = 40/206 (19%)
Query: 241 STSIETLDLSDNNL---PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFL 297
+ + ++D S L PS N+ + + L+L N L +AF + LR L
Sbjct: 15 NNNKNSVDCSSKKLTAIPS--------NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL 66
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
YL N+L+ F ++ +L L + NKL + L +L + L+ N
Sbjct: 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV------NLAELRLDRNQ 120
Query: 358 ITGPLPDLGGFSS---LKILVLGENRL----NGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
+ LP F S L L LG N L G DK L L+ L L N
Sbjct: 121 LKS-LPP-RVFDSLTKLTYLSLGYNELQSLPKGVFDK----LTSLKELRLYNN------- 167
Query: 411 LGTQLQSFNASVYAGNPELCGLPLPN 436
QL+ + EL L L N
Sbjct: 168 ---QLKRVPEGAFDKLTELKTLKLDN 190
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYLHL 171
+L +L L +++N P+ F L L L L L +P R F L+ L YL L
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQ-LVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSL 140
Query: 172 ENSNLFSL--GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229
+ L SL G L+SL+ L L L + + KL LKTL L + L
Sbjct: 141 GYNELQSLPKGVFD---KLTSLKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLKR 195
Query: 230 INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262
+ + F+ ++ L L +N PW
Sbjct: 196 VPEGA---FDSLEKLKMLQLQEN--------PW 217
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 5e-09
Identities = 45/315 (14%), Positives = 97/315 (30%), Gaps = 29/315 (9%)
Query: 112 LKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC---------------GTSLLKV 156
++ + + I ++R + L G +
Sbjct: 38 YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97
Query: 157 PRPFQYLSGLVYLHLENSNLFSLGSLQWLS-HLSSLRHLDLSYINLTKSSDWFQVVAKLR 215
+ L + L+ + + L+ ++ + + L LS + + A R
Sbjct: 98 EAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156
Query: 216 SLKTLVLHSCALPPINPSSIWHF-NLSTSIETLDLSD--NNLPSSSVYPWLFNLSRNIQY 272
+LK L L + ++ + HF + TS+ +L++S + + S++ L N++
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL-ERLVTRCPNLKS 215
Query: 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL 332
L L + Q L L E P + + C LSG
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-VRPDVYSGLSVALSGCKELRCLSGFW 274
Query: 333 S---EMIQNLSGGCTMNSLEGVCLEGNDIT--GPLPDLGGFSSLKILVLGENRLNGTIDK 387
+ + C+ L + L + + L L+ L + + + ++
Sbjct: 275 DAVPAYLPAVYSVCS--RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332
Query: 388 SLSQLLKLESLSLGR 402
S L L +
Sbjct: 333 LASTCKDLRELRVFP 347
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 6/153 (3%)
Query: 86 KVLNLRRSDDENSRGTVLKGT---ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRL 142
L + + L+ + DLR L LS ++
Sbjct: 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458
Query: 143 RYLNLS-CGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINL 201
L+++ G S L + L L + + L S L ++R L +S ++
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
Query: 202 TKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234
+ + + K+ L V+ P P S
Sbjct: 519 SFGA-CKLLGQKMPKLNVEVIDERGAPDSRPES 550
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 23/259 (8%)
Query: 84 HVKVLNLR---RSDDENSRGTVLKGTISPALLKL----HDLRHLDLSNNHFGGSPLPEFI 136
V+ + L+ D N G + P + + L + L L
Sbjct: 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126
Query: 137 GSLSRLRYLNLSCGTSL--LKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS----S 190
S + L LS + L L L S++ + S WLSH S
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWLSHFPDTYTS 185
Query: 191 LRHLDLS-YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDL 249
L L++S + S ++V + +LK+L L+ + +E L
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA---VPLEKLATLLQRAPQLEELGT 242
Query: 250 S----DNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNEL- 304
+ S + + ++ L+ ++++ +P + + L L L+ +
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
Query: 305 EGGIPKFFGKMCSLNRLCL 323
+ K + L RL +
Sbjct: 303 SYDLVKLLCQCPKLQRLWV 321
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 47/320 (14%), Positives = 96/320 (30%), Gaps = 43/320 (13%)
Query: 99 RGTVLKGTISPALLKLHDLRHLDLSN-----NHFGGSPLPEFIGSLSRLRYLNLSCGTSL 153
V ++ L + L L S L + LR L+
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278
Query: 154 LKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 213
+P + S L L+L + + S ++ L L+ L + + + + + +
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL--DYIEDAGLEVLAST 336
Query: 214 LRSLKTLVLHSC-ALPPINPSSIWHFNLS------TSIETLDLSDNNLPSSSVYPWLFNL 266
+ L+ L + ++ L +E++ + ++++ +
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT-IARN 395
Query: 267 SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326
N+ L ++ YLT L+ G L RL L
Sbjct: 396 RPNMTRFRL-------------CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441
Query: 327 KLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT--GPLPDLGGFSSLKILVLGENRLNGT 384
L D + + +E + + + G L G SL+ L + +
Sbjct: 442 -LLTDKV--FEYIGTYAK--KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF--- 493
Query: 385 IDKSLSQLL----KLESLSL 400
DK+L + SL +
Sbjct: 494 GDKALLANASKLETMRSLWM 513
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 43/289 (14%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSL----SRLRYLNLS-------CGTSLLK 155
+ H + LDLS N+ E I + + + LNLS L++
Sbjct: 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73
Query: 156 VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHL-----SSLRHLDLSYINLTKS--SDWF 208
+ + + L+L + N S S L ++ LDL + + + S++
Sbjct: 74 ILAAIP--ANVTSLNL-SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130
Query: 209 QVVAKL-RSLKTLVLHSCALPPINPSSIWHF-----NLSTSIETLDLSDNNLPSSSVY-- 260
Q + L S+ +L L + S + ++ +L+L NNL S +
Sbjct: 131 QAFSNLPASITSLNLRGND---LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187
Query: 261 -PWLFNLSRNIQYLNLGFNSLQGS----IPEAFQLM-VSLRFLYLTSNELEG----GIPK 310
+L ++ ++ L+L N L + F + + L L N L G +
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247
Query: 311 FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGG-CTMNSLEGVCLEGNDI 358
+ L + L Y+ + E + L + + V G +I
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 50/256 (19%), Positives = 82/256 (32%), Gaps = 65/256 (25%)
Query: 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244
S + LDLS NL S V +++ N S+
Sbjct: 18 TSIPHGVTSLDLSLNNLYSIS----TVELIQAFA--------------------NTPASV 53
Query: 245 ETLDLSDNNLPSSSVY---PWLFNLSRNIQYLNLGFNSLQG----SIPEAFQLM-VSLRF 296
+L+LS N+L + L + N+ LNL N L + + + ++
Sbjct: 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113
Query: 297 LYLTSNELEGGIPKFFGKM-----CSLNRLCLPYNKLSGD----LSEMIQNLSGGCTMNS 347
L L N+ F + S+ L L N L L +++ + +NS
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP--ANVNS 171
Query: 348 LEGVCLEGNDITGPLPDLGGF----------SSLKILVLGENRLNGTIDKSLSQLLK--- 394
L L GN++ +S+ L L N L L+ +
Sbjct: 172 LN---LRGNNLA----SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224
Query: 395 --LESLSLGRNSFTGK 408
+ SL+L N G
Sbjct: 225 NHVVSLNLCLNCLHGP 240
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Query: 169 LHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228
L L N+ L + L LR ++ S +T + + ++L S L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--AFEGASGVNEILLTSNRLE 94
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-A 287
+ + F S++TL L N + + V F +++ L+L N + ++ A
Sbjct: 95 NV-QHKM--FKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148
Query: 288 FQLMVSLRFLYLTSN 302
F + SL L L +N
Sbjct: 149 FDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFL 297
++ L L++N L ++ +N N + I E AF+ + +
Sbjct: 29 HIPQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKIT-DIEEGAFEGASGVNEI 86
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
LTSN LE K F + SL L L N+++ ++ LS S+ + L N
Sbjct: 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS------SVRLLSLYDNQ 140
Query: 358 ITGPLPDLGGFSSLKIL 374
IT + G F +L L
Sbjct: 141 IT-TVAP-GAFDTLHSL 155
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENS 174
L L+NN F L +LR +N S + + F+ SG+ + L S
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILL-TS 90
Query: 175 NLFSLGSLQW--LSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPIN 231
N L ++Q L SL+ L L +T +D F L S++ L L+ + +
Sbjct: 91 N--RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVA 145
Query: 232 PSSIWHFNLSTSIETLDLSDN 252
P + F+ S+ TL+L N
Sbjct: 146 PGA---FDTLHSLSTLNLLAN 163
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFL 297
+ E LDL L +++ F + +LNL +N LQ ++ F + L L
Sbjct: 32 GIPADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC--TMNSLEGVCLEG 355
L +N+L F + L++L L N+L ++L G + L+ + L
Sbjct: 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQL--------KSLPSGVFDRLTKLKELRLNT 140
Query: 356 NDITGPLPDLGGF---SSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403
N + +P G F ++L+ L L N+L + +L KL++++L N
Sbjct: 141 NQLQS-IPA-GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 51/189 (26%), Positives = 72/189 (38%), Gaps = 37/189 (19%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENS 174
D LDL + F G L++L +LNL L + F L+ L L L N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRG-LTKLTWLNLD-YNQLQTLSAGVFDDLTELGTLGLANN 93
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234
L SL + HL+ L L L L V +L LK L L++ L I P+
Sbjct: 94 QLASLPLGVF-DHLTQLDKLYLGGNQLKSLPSG--VFDRLTKLKELRLNTNQLQSI-PAG 149
Query: 235 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVS 293
F+ T+++TL LS N L S+P AF +
Sbjct: 150 A--FDKLTNLQTLSLSTNQLQ---------------------------SVPHGAFDRLGK 180
Query: 294 LRFLYLTSN 302
L+ + L N
Sbjct: 181 LQTITLFGN 189
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 9e-08
Identities = 53/261 (20%), Positives = 93/261 (35%), Gaps = 8/261 (3%)
Query: 68 RDCCKWRGVRCSNKTGHVKVLN--LRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNN 125
D W+ + + K H V L + ++H+DLSN+
Sbjct: 44 SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 103
Query: 126 HFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185
S L + S+L+ L+L + S LV L+L + FS +LQ L
Sbjct: 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163
Query: 186 -SHLSSLRHLDLSYINLTKSSDWFQVVAKL-RSLKTLVLHSCALPPINPSSIWHFNLS-T 242
S S L L+LS+ VA + ++ L L + S +
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCP 222
Query: 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL-GFNSLQGSIPEAFQLMVSLRFLYLTS 301
++ LDLSD+ + + + F L +Q+L+L + + +L+ L +
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281
Query: 302 NELEGGIPKFFGKMCSLNRLC 322
+G + + L C
Sbjct: 282 IVPDGTLQLLKEALPHLQINC 302
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 1e-07
Identities = 35/295 (11%), Positives = 84/295 (28%), Gaps = 27/295 (9%)
Query: 23 EPRIADSNNTVMRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKT 82
+ + + L + + D + + K
Sbjct: 47 GEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKL 106
Query: 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFG--------GSPLPE 134
+K + + E + + I K L + F L
Sbjct: 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP 166
Query: 135 FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL--SHLSSLR 192
+ ++ L L + +L +P L L + S ++ + S L +L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEII-SGGLPDSVVEDILGSDLPNLE 222
Query: 193 HLDLSYINLTKSSD-------WFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIE 245
L L D + +LK L + + ++ +E
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282
Query: 246 TLDLSDNNLPSSSVYPWLFNLSR--NIQYLNLGFNSLQG----SIPEAFQLMVSL 294
T+D+S L L ++ + +++++N+ +N L + ++ + + +
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 3e-07
Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 152 SLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQW--LSHLSSLRHLDLSYINLTKSSDWFQ 209
L L L++EN L L+ L L LR+L + L +
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAP--D 74
Query: 210 VVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL 254
L L L AL ++ ++ +L L LS N L
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ----ELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 5e-07
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLH 223
G L SL L +L L + + + + + L L+ L +
Sbjct: 8 HGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIV 64
Query: 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ 281
L + P + F+ + + L+LS N L S+ ++Q L L N L
Sbjct: 65 KSGLRFVAPDA---FHFTPRLSRLNLSFNAL--ESLSWKTVQ-GLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMV 292
S+ H + ++ L + + + ++ L + + L+ P+AF
Sbjct: 22 DSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80
Query: 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
L L L+ N LE K + SL L L N L
Sbjct: 81 RLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 14/117 (11%)
Query: 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP-EAFQLMVSLRFLYL 299
S+ + + + N+ L + + + + LR L +
Sbjct: 10 SSGLRCTRDGALDSLHH------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63
Query: 300 TSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGN 356
+ L P F L+RL L +N L + +Q L SL+ + L GN
Sbjct: 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-------SLQELVLSGN 113
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 30/130 (23%), Positives = 44/130 (33%), Gaps = 26/130 (20%)
Query: 70 CCKW-RGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFG 128
C G+RC+ G + L L +L L + N
Sbjct: 6 CPHGSSGLRCTRD-GALDSL--------------------HHLPGAENLTELYIENQQHL 44
Query: 129 GSPLPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLHLENSNLFSLGSLQWLSH 187
+ L LR L + + L V F + L L+L + L SL S + +
Sbjct: 45 QHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQG 102
Query: 188 LSSLRHLDLS 197
L SL+ L LS
Sbjct: 103 L-SLQELVLS 111
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 18/161 (11%)
Query: 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSN---ELEGGIPKFFGKMCSLNRLCLPYNKLS 329
L+ ++ + + + + L L++N ++ M +L L L N +
Sbjct: 30 LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK 83
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTID-KS 388
I+NL ++LE + + N I L + +L++L + N++ +
Sbjct: 84 K-----IENLDAVA--DTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDK 135
Query: 389 LSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPEL 429
L+ L KLE L L N + V P L
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
+ L L +HL LS N+ + + + LR L+L + K+ L
Sbjct: 40 MDATLSTLKACKHLALSTNNI--EKI-SSLSGMENLRILSLGR-NLIKKIENLDAVADTL 95
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLH 223
L + + + SL ++ L +LR L +S N + +A L L+ L+L
Sbjct: 96 EELWISYNQIASLSGIE---KLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLA 148
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 21/141 (14%)
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
V LH + + + LS L + +HL LS N+ K ++ + +L+ L L
Sbjct: 27 KVELHGMIPPIEKMDAT--LSTLKACKHLALSTNNIEK----ISSLSGMENLRILSLGRN 80
Query: 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR--NIQYLNLGFNSLQGS 283
+ I ++ ++E L +S N + S L + + N++ L + N + +
Sbjct: 81 LIKKIENLD----AVADTLEELWISYNQIAS------LSGIEKLVNLRVLYMSNNKIT-N 129
Query: 284 IPEAFQL--MVSLRFLYLTSN 302
E +L + L L L N
Sbjct: 130 WGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 12/118 (10%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLH 170
L + +LR L L N + L L +S + + + L L L+
Sbjct: 66 LSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISY--NQIASLSGIEKLVNLRVLY 121
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLS--------YINLTKSSDWFQVVAKLRSLKTL 220
+ N+ + + G + L+ L L L L+ N S +VV +L +LK L
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 39/318 (12%), Positives = 94/318 (29%), Gaps = 33/318 (10%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQYLSGLVYL 169
+L + + +++ + + L ++P F + + + L
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229
L + L + + +L L+ N+ + + LK L + A
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356
Query: 230 --------INPSSIWHFNLS-TSIETLDLSDNNLPSSSVYPWLFNLS--RNIQYLNLGFN 278
++ + +E + + +++ + S+ L + + + L
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416
Query: 279 S------LQGSIPEAFQLMVSLRFLYLTSN--ELEGGIPKFFGKMC-SLNRLCLPYNKLS 329
L + LR L + G+ ++ + L Y S
Sbjct: 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDIT--GPLPDLGGFSSLKILVLGENRLNGTIDK 387
E + S GC +L+ + + G + + SL+ L + R + T
Sbjct: 477 ---DEGLMEFSRGCP--NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531
Query: 388 SLSQ---LLKLESLSLGR 402
+ +E + R
Sbjct: 532 LMQMARPYWNIELIPSRR 549
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 52/311 (16%)
Query: 117 LRHLDLSNNHF---GGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLEN 173
++ L + + F G L E + L LN
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM-------------------TEFAK 206
Query: 174 SNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPS 233
+ L ++ + SL + + + + +F+ A L L+ P
Sbjct: 207 ISPKDLETI--ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264
Query: 234 SIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG-SIPEAFQLMV 292
++ + + N +P LF + I+ L+L + L+ Q
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPI------LFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318
Query: 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEM--------IQNLSGGCT 344
+L L + + G+ L RL + + + + L+ GC
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378
Query: 345 MNSLEGVCLEGNDITGP-----LPDLGGFSSLKILVLG--ENRLNGTIDKSLSQLL---- 393
LE + + +DIT L ++++L E + +D + LL
Sbjct: 379 --ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436
Query: 394 KLESLSLGRNS 404
KL +
Sbjct: 437 KLRRFAFYLRQ 447
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 42/293 (14%), Positives = 91/293 (31%), Gaps = 30/293 (10%)
Query: 118 RHLDLSNNHFGGSPLPEFIGS-LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176
H+ ++ + + P+ + LR L L +P + L+ +
Sbjct: 53 EHVTMALCY---TATPDRLSRRFPNLRSLKLKG--------KPRAAMFNLIPENWGGYVT 101
Query: 177 FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW 236
+ + ++L L+ + + ++ A+ L+TL L C +
Sbjct: 102 PWVTEI--SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC--SGFTTDGLL 157
Query: 237 HF-NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI---QYLNLGFNSLQG----SIPEAF 288
I+TL + +++ WL L+++ + LN +
Sbjct: 158 SIVTHCRKIKTLLMEESSFSEKDG-KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348
+ SL + + + + FF +L C + E NL + L
Sbjct: 217 RNCRSLVSVKV-GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275
Query: 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNG-TIDKSLSQLLKLESLSL 400
+ N++ P + ++ L L L + + LE L
Sbjct: 276 GLSYMGPNEMPILFPFA---AQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA-FQLMVSLRFL 297
+ T+ + L L DN + + + P +F+ N++ L LG N L ++P F + L L
Sbjct: 37 GIPTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVL 93
Query: 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
L +N+L F ++ L L + NKL
Sbjct: 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSD 251
+ L L +TK V L +LK L L S L + P + F+ T + LDL
Sbjct: 43 QILYLHDNQITKLEP--GVFDSLINLKELYLGSNQLGAL-PVGV--FDSLTQLTVLDLGT 97
Query: 252 NNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKF 311
N L + + +F+ +++ L + N L +P + + L L L N+L+
Sbjct: 98 NQL--TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 312 FGKMCSLNRLCLPYN 326
F ++ SL L N
Sbjct: 155 FDRLSSLTHAYLFGN 169
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
+ + L L N P + +++ ++L N + ++F M L L
Sbjct: 28 GIPRDVTELYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
L+ N L P+ F + SL L L N +S
Sbjct: 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLHLE 172
L +D S+N L + L RL+ L ++ + ++ Q L L L L
Sbjct: 41 LDQFDAIDFSDNEI--RKL-DGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELILT 96
Query: 173 NSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTL 220
N++L LG L L+ L SL +L + +T V+ K+ ++ L
Sbjct: 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 11/121 (9%)
Query: 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244
++ R LDL + + + A L + + ++ F L +
Sbjct: 15 YTNAVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIRKLD-----GFPLLRRL 66
Query: 245 ETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG-SIPEAFQLMVSLRFLYLTSNE 303
+TL +++N + + L ++ L L NSL + + SL +L + N
Sbjct: 67 KTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124
Query: 304 L 304
+
Sbjct: 125 V 125
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 108 SPALLKLHDLRHLDLSNNHFGGSPLPEFIGS-LSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
+ R LDL P+ E +G+ L + ++ S + K+ F L L
Sbjct: 12 AAQYTNAVRDRELDLRGY---KIPVIENLGATLDQFDAIDFS-DNEIRKL-DGFPLLRRL 66
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
L + N+ + +G L L L L+ N +A L+SL L +
Sbjct: 67 KTLLVNNNRICRIGEG-LDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 15/118 (12%)
Query: 213 KLRSLKTLVLHSCALPPINPSSIWHFNLS---TSIETLDLSDNNLPSSSVYPWLFNLSRN 269
+ L L +P I NL + +D SDN + +P L L
Sbjct: 17 NAVRDRELDLRGYKIPVIE-------NLGATLDQFDAIDFSDNEIRKLDGFPLLRRL--- 66
Query: 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPKFFGKMCSLNRLCLPYN 326
+ L + N + Q + L L LT+N L G + SL LC+ N
Sbjct: 67 -KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 15/137 (10%)
Query: 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL 332
+ L ++ + + V R L L ++ I + + + N++
Sbjct: 2 VKLTAELIEQA--AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--- 55
Query: 333 SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLG-GFSSLKILVLGENRLN--GTIDKSL 389
+ + L+ + + N I L L L+L N L G +D L
Sbjct: 56 --KLDGFP---LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-L 109
Query: 390 SQLLKLESLSLGRNSFT 406
+ L L L + RN T
Sbjct: 110 ASLKSLTYLCILRNPVT 126
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 239 NLSTSIETLDLSDN---NLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSL 294
++ L L+DN + S ++ L +L L L N L I AF+ +
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHL----VKLELKRNQLT-GIEPNAFEGASHI 80
Query: 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
+ L L N+++ K F + L L L N++S
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
+ LDL N+L S+ +F+ ++ L LG N LQ F + SL +L
Sbjct: 25 GIPAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
L++N+L+ F K+ L L L N+L
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSN 175
+R L L N + L +L+L L+ V L L L L +
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISVS-NLPKLPKLKKLELSENR 82
Query: 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
+F + L +L HL+LS L S + + KL LK+L L +C
Sbjct: 83 IFGGLDML-AEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 104 KGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163
G I + +L L L N + L +L+ L LS + + L
Sbjct: 38 DGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94
Query: 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTL 220
L +L+L + L + +L+ L L L+ LDL +T +D V L L L
Sbjct: 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 216 SLKTLVLHSCALPPINPSSIWHFNLS-TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274
+++ LVL +C N I ++E L L + L S S P L L + L
Sbjct: 25 AVRELVLDNCK---SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKL----KKLE 77
Query: 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPKFFGKMCSLNRLCLPYN 326
L N + G + + + +L L L+ N+L+ + K+ L L L
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 11/140 (7%)
Query: 161 QYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220
+ + + L L+N + +L L L + L S+ + KL LK L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN----LPKLPKLKKL 76
Query: 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN-- 278
L + ++ L+LS N L S L L ++ L+L
Sbjct: 77 ELSENRIFGGLD---MLAEKLPNLTHLNLSGNKLKDISTLEPLKKL-ECLKSLDLFNCEV 132
Query: 279 -SLQGSIPEAFQLMVSLRFL 297
+L F+L+ L +L
Sbjct: 133 TNLNDYRESVFKLLPQLTYL 152
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSN 175
D++ L L N+ L L +L+ L + L+ L L L ++
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSIA-NLPKLNKLKKLELSDNR 75
Query: 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225
+ + +L HL+LS + S + + KL +LK+L L +C
Sbjct: 76 VSGGLEVL-AEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Query: 111 LLKLHDLRHLDLSNNHFGG-SPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 169
+ +L L N + LP L++L+ L LS + + L +L
Sbjct: 38 TDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93
Query: 170 HLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTL 220
+L + + L +++ L L +L+ LDL +T +D V L L L
Sbjct: 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 34/145 (23%)
Query: 161 QYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220
+ S + L L+NS L L + LT +A L L L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-------IANLPKLNKL 66
Query: 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSL 280
+ L+LSDN + S L N+ +LNL N +
Sbjct: 67 ------------------------KKLELSDNRV--SGGLEVLAEKCPNLTHLNLSGNKI 100
Query: 281 QG-SIPEAFQLMVSLRFLYLTSNEL 304
+ S E + + +L+ L L + E+
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEV 125
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN 302
++ L L ++ + +++L+ L SI + L+ L L+ N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDN 74
Query: 303 ELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT 359
+ GG+ K +L L L NK+ DLS I+ L + +L+ + L ++T
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIK-DLST-IEPLKK---LENLKSLDLFNCEVT 126
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275
+K LVL + + +E L + L S + P L L + L L
Sbjct: 18 DVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKL----KKLEL 71
Query: 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPKFFGKMCSLNRLCLPYN 326
N + G + + +L L L+ N+++ + K+ +L L L
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 56/312 (17%), Positives = 96/312 (30%), Gaps = 69/312 (22%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166
+ L LR L+L+ P ++ ++L R L
Sbjct: 64 QRFSAEVLSSLRQLNLAGVRMT----PVKCTVVA-----------AVLGSGR-----HAL 103
Query: 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226
++L + L G L R L L +L + + L+ L+LH
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA--------CKDLRDLLLHD-- 153
Query: 227 LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN--IQYLNLGFNSLQ--- 281
I TL LS+N L ++ V + L+ N + +L+L L
Sbjct: 154 --------------QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG 199
Query: 282 -GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM----CSLNRLCLPYNKLSGD----L 332
+ L+ L + N + SL L L +N+LS + L
Sbjct: 200 LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259
Query: 333 SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQL 392
++ GG + EG ++ IL + LN + +
Sbjct: 260 RDLGGAAEGGARVVVSL---TEGTAVSE--------YWSVILSEVQRNLNSWDRARVQRH 308
Query: 393 LKLESLSLGRNS 404
L+L L +
Sbjct: 309 LELLLRDLEDSR 320
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEA-FQLMVSLRFL 297
+ +S L+L N L S+ +F+ + L+L N +Q S+P+ F + L L
Sbjct: 25 GIPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTIL 81
Query: 298 YLTSNELEGGIPK-FFGKMCSLNRLCLPYNKL 328
YL N+L+ +P F K+ L L L N+L
Sbjct: 82 YLHENKLQ-SLPNGVFDKLTQLKELALDTNQL 112
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.84 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.83 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.83 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.82 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.77 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.71 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.67 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.66 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.57 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.56 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.53 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.52 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.52 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.51 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.48 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.46 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.42 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.41 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.38 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.36 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.35 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.35 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.22 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.13 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.12 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.99 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.87 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.8 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.66 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.65 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.56 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.47 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.45 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.06 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.05 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.71 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.55 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.99 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.44 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 89.59 | |
| 2l2t_A | 44 | Receptor tyrosine-protein kinase ERBB-4; transmemb | 88.95 | |
| 2jwa_A | 44 | Receptor tyrosine-protein kinase ERBB-2; transmemb | 85.91 | |
| 2l9u_A | 40 | Receptor tyrosine-protein kinase ERBB-3; transmenb | 81.47 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-47 Score=418.03 Aligned_cols=173 Identities=35% Similarity=0.586 Sum_probs=137.4
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC------
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG------ 341 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------ 341 (524)
++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+.....
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 37888888888888888888888888888888888877777777777777766666666666555543322100
Q ss_pred --------------------------------------------------------------------------------
Q 009835 342 -------------------------------------------------------------------------------- 341 (524)
Q Consensus 342 -------------------------------------------------------------------------------- 341 (524)
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence
Q ss_pred --CCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCccccc
Q 009835 342 --GCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSF 418 (524)
Q Consensus 342 --~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 418 (524)
...+++|+.|+|++|+++|.+|. ++++++|++|||++|+++|.+|..+.++++|++||+++|+++|.+|...++.++
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC
Confidence 01234788888888888887776 888999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCC
Q 009835 419 NASVYAGNPELCGLPLPNKCPDE 441 (524)
Q Consensus 419 ~~~~~~gn~~~C~~~~~~~c~~~ 441 (524)
....+.|||.+||.|.. .|...
T Consensus 730 ~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 730 PPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp CGGGGCSCTEEESTTSC-CCCSC
T ss_pred CHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999999999886 78654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=345.82 Aligned_cols=304 Identities=31% Similarity=0.491 Sum_probs=228.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc--ccceEeCCCC--CcEEEEEcCCCCCCCCCCCccee--ecC
Q 009835 35 RCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCK--WRGVRCSNKT--GHVKVLNLRRSDDENSRGTVLKG--TIS 108 (524)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~~--~~~ 108 (524)
.|.++|++||++||+++.+|. .+.+|. .+.+||. |.||+|+... ++|+.|+|+++ .+.+ .+|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~--------~l~~~~~~~ 69 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPIP 69 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC--------CCSSCEECC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCC--------CccCCcccC
Confidence 589999999999999998776 688997 4778998 9999997654 79999999995 7788 889
Q ss_pred ccccCCCCCCEEEccC-CCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCC
Q 009835 109 PALLKLHDLRHLDLSN-NHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSH 187 (524)
Q Consensus 109 ~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 187 (524)
+.+.++++|++|++++ |.+.+. +|..++++++|++|+|++|.+.+.+|..|.++++|++|++++|.+....
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------- 141 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL------- 141 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-------
T ss_pred hhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-------
Confidence 9999999999999995 888876 8888888888888888888888788877777777777777666554211
Q ss_pred CCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcc
Q 009835 188 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 267 (524)
Q Consensus 188 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 267 (524)
+..+..+ ++|++|++++|.+++ .++..+....
T Consensus 142 --------------------p~~~~~l---------------------------~~L~~L~L~~N~l~~-~~p~~l~~l~ 173 (313)
T 1ogq_A 142 --------------------PPSISSL---------------------------PNLVGITFDGNRISG-AIPDSYGSFS 173 (313)
T ss_dssp --------------------CGGGGGC---------------------------TTCCEEECCSSCCEE-ECCGGGGCCC
T ss_pred --------------------ChHHhcC---------------------------CCCCeEECcCCcccC-cCCHHHhhhh
Confidence 1122233 333333333333322 2333333333
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
++|++|++++|.+++.+|..+..++ |+.|++++|.+++..|..+..+++|++|++++|.+
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------------- 233 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL------------------- 233 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-------------------
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce-------------------
Confidence 3677777777777766666666665 66666666666666666665555555555555544
Q ss_pred ccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCC
Q 009835 348 LEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNP 427 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~ 427 (524)
++.++.+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+|+
T Consensus 234 -----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 -----------AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -----------CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred -----------eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 444444566789999999999999999999999999999999999999999998888999999999999
Q ss_pred CCCCCCCCCCC
Q 009835 428 ELCGLPLPNKC 438 (524)
Q Consensus 428 ~~C~~~~~~~c 438 (524)
++||.|.. .|
T Consensus 303 ~lc~~p~~-~C 312 (313)
T 1ogq_A 303 CLCGSPLP-AC 312 (313)
T ss_dssp EEESTTSS-CC
T ss_pred CccCCCCC-CC
Confidence 99998765 46
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=363.72 Aligned_cols=367 Identities=17% Similarity=0.200 Sum_probs=258.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCC--------CCCCCCCCCCCCCCCcc---cceEeCCCCCcEEEEEcCCCCCCCCCCCcc
Q 009835 35 RCIDEEREALLTFKQSLVDEYG--------VLSSWGKDNDKRDCCKW---RGVRCSNKTGHVKVLNLRRSDDENSRGTVL 103 (524)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~--------~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l 103 (524)
.....|+.||.++++++.++.. ...+|+ .+.++|.| .||+|+.. +||+.|+|+++ .+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~--------~l 93 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGF--------GA 93 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTS--------CC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCc--------cc
Confidence 3456799999999999875432 123798 57899999 99999754 89999999995 88
Q ss_pred eeecCccccCCCCCCEEEccCCCC--------------------------------------------------------
Q 009835 104 KGTISPALLKLHDLRHLDLSNNHF-------------------------------------------------------- 127 (524)
Q Consensus 104 ~~~~~~~l~~l~~L~~L~Ls~n~l-------------------------------------------------------- 127 (524)
.|.+|++++++++|++|+|++|.+
T Consensus 94 ~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 94 SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred CCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence 999999999999999999998843
Q ss_pred ----------------------CCCCCccccCCCCCCCEEEccCCCCCcc-----------------CCcccc--CCCCC
Q 009835 128 ----------------------GGSPLPEFIGSLSRLRYLNLSCGTSLLK-----------------VPRPFQ--YLSGL 166 (524)
Q Consensus 128 ----------------------~~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~~~--~l~~L 166 (524)
++ +|..++++++|++|+|++|.+++. +|..++ ++++|
T Consensus 174 ~~~~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 174 SIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 12 677888999999999999999886 888888 99999
Q ss_pred cEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCC-CCCchHhhhcc------cCCCEEEeeCCCCCCCCCCchhhh
Q 009835 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTK-SSDWFQVVAKL------RSLKTLVLHSCALPPINPSSIWHF 238 (524)
Q Consensus 167 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~l~~l------~~L~~L~L~~n~l~~~~~~~~~~~ 238 (524)
++|++++|.+.+. .+..+.++++|++|++++|. +++ . ++..+..+ ++|++|++++|.++ ..|....+.
T Consensus 252 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 252 TDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp CEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 9999999987743 33678889999999999998 765 2 14455555 88888888888887 444211233
Q ss_pred cccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccc-cceEeecCcccccccchhhcCCC-
Q 009835 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS-LRFLYLTSNELEGGIPKFFGKMC- 316 (524)
Q Consensus 239 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~- 316 (524)
.+ ++|++|++++|.+.+ .++ .+.... +|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++
T Consensus 328 ~l-~~L~~L~L~~N~l~g-~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 328 KM-KKLGMLECLYNQLEG-KLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp TC-TTCCEEECCSCCCEE-ECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred cC-CCCCEEeCcCCcCcc-chh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 33 778888888887754 555 333333 6666666666665 55555555555 666666666555 4444443332
Q ss_pred -CCCEEEccCCCCCCchhHHHH-------hccC------------------CCCCCCccEEEcCCCCCccCCCC-CCCC-
Q 009835 317 -SLNRLCLPYNKLSGDLSEMIQ-------NLSG------------------GCTMNSLEGVCLEGNDITGPLPD-LGGF- 368 (524)
Q Consensus 317 -~L~~L~Ls~n~l~~~~~~~~~-------~l~~------------------~~~~~~L~~L~Ls~n~l~~~~~~-~~~l- 368 (524)
+|++|++++|.+++..|..+. .++. ...+++|++|++++|+++..++. +...
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 444444444444444433333 1100 00134788888888888854444 3322
Q ss_pred ------CCCcEEEccCCcCccccchhhh--cCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCC
Q 009835 369 ------SSLKILVLGENRLNGTIDKSLS--QLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNP 427 (524)
Q Consensus 369 ------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~ 427 (524)
++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|.. ..+..+....+.+|.
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 38999999999998 6787776 89999999999999998 6653 345666667776554
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=354.47 Aligned_cols=362 Identities=19% Similarity=0.237 Sum_probs=227.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCC--Ccc------------cceEeCCCCCcEEEEEcCCCCCC
Q 009835 33 VMRCIDEEREALLTFKQSLVDEYGVLSSWGKDN--DKRDC--CKW------------RGVRCSNKTGHVKVLNLRRSDDE 96 (524)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~ 96 (524)
...+..+|+.||++||+++.+| +|+... ...++ |.| .||+|+. .+||+.|+|+++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--- 333 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--- 333 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence 3445678999999999999876 676321 02345 999 9999975 689999999995
Q ss_pred CCCCCcceeecCccccCCCCCCEEEc-cCCCCCCC---------------------------------------------
Q 009835 97 NSRGTVLKGTISPALLKLHDLRHLDL-SNNHFGGS--------------------------------------------- 130 (524)
Q Consensus 97 ~~~~~~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~--------------------------------------------- 130 (524)
++.|.+|++++++++|++|+| ++|.+.+.
T Consensus 334 -----~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 334 -----GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp -----CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred -----CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 788888888888888888888 66643221
Q ss_pred ------------------------------CCccccCCCCCCCEEEccCCCCCc-----------------cCCcccc--
Q 009835 131 ------------------------------PLPEFIGSLSRLRYLNLSCGTSLL-----------------KVPRPFQ-- 161 (524)
Q Consensus 131 ------------------------------~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~~~-- 161 (524)
.+|..++++++|++|+|++|.+++ .+|..++
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence 056777888888888888888887 3777776
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCC-CCCchHhhhccc-------CCCEEEeeCCCCCCCCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTK-SSDWFQVVAKLR-------SLKTLVLHSCALPPINP 232 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~l~~l~-------~L~~L~L~~n~l~~~~~ 232 (524)
++++|++|+|++|.+.... +..+.++++|++|++++|. +++ . ++..+..++ +|++|++++|.+. ..|
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~--iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQ--LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCHHH--HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred cCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCccccc--chHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 8888888888888766433 3667788888888888886 654 1 123344443 6777777777666 333
Q ss_pred CchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccc-cceEeecCcccccccchh
Q 009835 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS-LRFLYLTSNELEGGIPKF 311 (524)
Q Consensus 233 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~ 311 (524)
....+..+ ++|++|++++|.+. .+| .+... ++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..
T Consensus 565 ~~~~l~~L-~~L~~L~Ls~N~l~--~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 565 ASASLQKM-VKLGLLDCVHNKVR--HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp CHHHHTTC-TTCCEEECTTSCCC--BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred ChhhhhcC-CCCCEEECCCCCcc--cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 10012233 66666666666652 333 33222 25555555555555 45555555555 555555555555 34433
Q ss_pred hcCC-------------------------------CCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCcc
Q 009835 312 FGKM-------------------------------CSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360 (524)
Q Consensus 312 l~~l-------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~ 360 (524)
+..+ ++|+.|++++|.++...+..+..++ +|+.|+|++|+++.
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~------~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS------PISTIILSNNLMTS 711 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC------CCSEEECCSCCCSC
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC------CCCEEECCCCcCCc
Confidence 3322 2455555555555543333333333 67777777777764
Q ss_pred CCCC-CC-------CCCCCcEEEccCCcCccccchhhh--cCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCC
Q 009835 361 PLPD-LG-------GFSSLKILVLGENRLNGTIDKSLS--QLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNP 427 (524)
Q Consensus 361 ~~~~-~~-------~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~ 427 (524)
.++. +. ++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|.. ..+..+....+.+|+
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 4333 22 1226777777777776 5666665 67777777777777776 4432 334455555555544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=330.33 Aligned_cols=348 Identities=22% Similarity=0.236 Sum_probs=255.9
Q ss_pred CCCCCcccc--eEeCCCC--------CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCcccc
Q 009835 67 KRDCCKWRG--VRCSNKT--------GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFI 136 (524)
Q Consensus 67 ~~~~c~w~g--v~c~~~~--------~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l 136 (524)
..+.|.|.+ +.|+... .+++.|+|+++ .+++..|..+.++++|++|++++|.+.+...+..|
T Consensus 4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~ 75 (455)
T 3v47_A 4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN--------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75 (455)
T ss_dssp ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS--------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT
T ss_pred ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCC--------ccCcCChhHhccCccccEEECcCCcccceECcccc
Confidence 445666665 7776432 57899999995 78888899999999999999999999765246789
Q ss_pred CCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCC-CCchhcCCCCCCcEEEccCCCCCCCCCchHhhhccc
Q 009835 137 GSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSL-GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215 (524)
Q Consensus 137 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 215 (524)
.++++|++|+|++|.+.+..|..|+++++|++|++++|.+.+. .....+..+++|++|++++|.+++... ...+.+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~ 154 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMR 154 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCC
Confidence 9999999999999999999999999999999999999998742 222348899999999999999988742 23488999
Q ss_pred CCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCch---------hhhccccccEEEeeccccccccch
Q 009835 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW---------LFNLSRNIQYLNLGFNSLQGSIPE 286 (524)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---------~~~~~~~L~~L~Ls~n~l~~~~~~ 286 (524)
+|++|++++|.+.+..+........ .+|+.|++++|.+.+ +++. ++.. ++|++|++++|.+++..|.
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~-~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQD--MNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTT-CEEEEEECTTCBCTT--CSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHH
T ss_pred cccEEeCCCCcccccChhhhhcccc-ccccccccccCcccc--cchhhcccccccccccc-ceeeeEecCCCcccccchh
Confidence 9999999999999887753333333 566777777776633 2211 1112 2566677766666655554
Q ss_pred hhhcc---------------------------------------cccceEeecCcccccccchhhcCCCCCCEEEccCCC
Q 009835 287 AFQLM---------------------------------------VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNK 327 (524)
Q Consensus 287 ~~~~l---------------------------------------~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 327 (524)
.+... ++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc
Confidence 44322 467777777777777777777777777777777777
Q ss_pred CCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 328 LSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 328 l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
+++..+..+..++ +|++|++++|.+++..+. +..+++|++|+|++|++++..|..+..+++|++|++++|+++
T Consensus 311 l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 311 INKIDDNAFWGLT------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CCEECTTTTTTCT------TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccChhHhcCcc------cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 7777666666554 777777777777776655 677777777777777777777777777777777777777777
Q ss_pred eeCCCC-CcccccccccccCCCCCCCCC
Q 009835 407 GKIPLG-TQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 407 ~~~p~~-~~~~~~~~~~~~gn~~~C~~~ 433 (524)
+..+.. ..+..+....+.+|++.|+.+
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 544432 345666667777777777544
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=353.30 Aligned_cols=148 Identities=23% Similarity=0.196 Sum_probs=81.1
Q ss_pred CcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCC
Q 009835 71 CKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCG 150 (524)
Q Consensus 71 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n 150 (524)
|+|..|.+ ...+++.|+|+++ .+++..+..|.++++|++|+|++|...+...|..|.++++|++|+|++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N--------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFN--------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESC--------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred CCCCCCCC--CCCCcCEEECCCC--------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 44555655 4467888888885 5555555556666666666666654433312455555666666666666
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCC-CCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCC
Q 009835 151 TSLLKVPRPFQYLSGLVYLHLENSNLFSL-GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229 (524)
Q Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 229 (524)
.+.+..|..|+++++|++|+|++|.+.+. +....+.++++|++|++++|.+++... ...+.++++|++|++++|.+.+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCe
Confidence 55555555555556666666655555431 111235555555555555555554421 2345555555555555555443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=320.82 Aligned_cols=338 Identities=21% Similarity=0.259 Sum_probs=282.6
Q ss_pred ccceEeCCC---------CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCC
Q 009835 73 WRGVRCSNK---------TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLR 143 (524)
Q Consensus 73 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~ 143 (524)
|..|.|... ..+++.|+|+++ .+++..+..|.++++|++|+|++|.+++. .|..|.++++|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKN--------RIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLR 83 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCC--------ccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCC
Confidence 456777532 246889999985 78888888999999999999999999986 788999999999
Q ss_pred EEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEee
Q 009835 144 YLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLH 223 (524)
Q Consensus 144 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~ 223 (524)
+|+|++|.+.+..+..|.++++|++|+|++|.+..... ..+.++++|++|++++|.+.... +..+..+++|++|+++
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLE 160 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEE
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeC--hhhccCCCCCCEEECC
Confidence 99999999998777789999999999999999986543 56889999999999999998775 3578899999999999
Q ss_pred CCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcc
Q 009835 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNE 303 (524)
Q Consensus 224 ~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 303 (524)
+|.+.+..+. .+..+ ++|+.|++++|.+.+ +++..+...++|+.|++++|.+.+.+|.......+|+.|++++|.
T Consensus 161 ~n~l~~~~~~--~l~~l-~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 161 KCNLTSIPTE--ALSHL-HGLIVLRLRHLNINA--IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp SCCCSSCCHH--HHTTC-TTCCEEEEESCCCCE--ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred CCcCcccChh--Hhccc-CCCcEEeCCCCcCcE--eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 9999877652 33444 999999999999944 444444455599999999998887888777777799999999999
Q ss_pred cccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCc
Q 009835 304 LEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLN 382 (524)
Q Consensus 304 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 382 (524)
+++..+..+..+++|++|+|++|.+++..+..|..++ +|++|+|++|++++..+. +..+++|+.|+|++|+++
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccc------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 9966667899999999999999999988777777655 899999999999998776 899999999999999999
Q ss_pred cccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCCCCCCC
Q 009835 383 GTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 383 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~~ 433 (524)
+..+..|..+++|+.|++++|++.+.++..+.+.......+.++...|..|
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred eeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 887888899999999999999999887754444444445566777777544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=323.28 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=109.5
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCCCCchhHHHHhccC------
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG------ 341 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------ 341 (524)
+|++|++++|.+++ +|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..++.
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 66666666666553 33445555555555555555554444 34444555555555555544444433332221
Q ss_pred -------------CCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 342 -------------GCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 342 -------------~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
...+++|++|++++|++++.+|. +.++++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~- 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE- 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence 12345899999999999888776 888999999999999999888999999999999999999988
Q ss_pred eCCCC-Cccc-ccccccccCCCCCCCCC
Q 009835 408 KIPLG-TQLQ-SFNASVYAGNPELCGLP 433 (524)
Q Consensus 408 ~~p~~-~~~~-~~~~~~~~gn~~~C~~~ 433 (524)
.+|.. ..+. .+....+.+||+.|+.+
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 45543 2333 47778899999999654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=316.89 Aligned_cols=348 Identities=23% Similarity=0.240 Sum_probs=232.1
Q ss_pred CCcccceEeCCC-----------CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCC
Q 009835 70 CCKWRGVRCSNK-----------TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGS 138 (524)
Q Consensus 70 ~c~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~ 138 (524)
.|.|.|+ |+.. ..+++.|+|+++ .+++..|..+.++++|++|++++|.+++. .|..|.+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN--------KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS--------CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCC--------ccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence 4778887 7532 247899999995 78888888999999999999999999986 6788999
Q ss_pred CCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCCCCCchHhhhcccCC
Q 009835 139 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLRSL 217 (524)
Q Consensus 139 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L 217 (524)
+++|++|+|++|.+.+..|..|+++++|++|++++|.+...+.+..+.++++|++|++++|. +...+ ...+.++++|
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L 150 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSL 150 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC--Hhhhhccccc
Confidence 99999999999999988888899999999999999999876655678999999999999998 44433 3478889999
Q ss_pred CEEEeeCCCCCCCCCCchh---------------------hhcccCcccEEEccCCCCCCCCCCc-hh------------
Q 009835 218 KTLVLHSCALPPINPSSIW---------------------HFNLSTSIETLDLSDNNLPSSSVYP-WL------------ 263 (524)
Q Consensus 218 ~~L~L~~n~l~~~~~~~~~---------------------~~~~~~~L~~L~L~~n~l~~~~~~~-~~------------ 263 (524)
++|++++|.+.+..+..+. ....+++|++|++++|.+.+..+.+ .+
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence 9999999998876554211 1122478888888888875421000 00
Q ss_pred ---------------------------------------------------------------------------hhccc
Q 009835 264 ---------------------------------------------------------------------------FNLSR 268 (524)
Q Consensus 264 ---------------------------------------------------------------------------~~~~~ 268 (524)
....+
T Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~ 310 (549)
T 2z81_A 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310 (549)
T ss_dssp ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence 01112
Q ss_pred cccEEEeeccccccccchhh-hcccccceEeecCcccccccch---hhcCCCCCCEEEccCCCCCCchh--HHHHhccC-
Q 009835 269 NIQYLNLGFNSLQGSIPEAF-QLMVSLRFLYLTSNELEGGIPK---FFGKMCSLNRLCLPYNKLSGDLS--EMIQNLSG- 341 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~- 341 (524)
+|+.|++++|.++ .+|..+ ..+++|++|++++|.+++.+|. .++.+++|++|++++|++++..+ ..+..++.
T Consensus 311 ~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 3444555555444 344443 3566677777777766655432 24556666666666666665432 33444330
Q ss_pred ----------------CCCCCCccEEEcCCCCCccCCCC------------------CCCCCCCcEEEccCCcCccccch
Q 009835 342 ----------------GCTMNSLEGVCLEGNDITGPLPD------------------LGGFSSLKILVLGENRLNGTIDK 387 (524)
Q Consensus 342 ----------------~~~~~~L~~L~Ls~n~l~~~~~~------------------~~~l~~L~~L~Ls~N~l~~~~p~ 387 (524)
...+++|++|++++|.+++.... ...+++|++|+|++|+++ .+|.
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC
Confidence 01122333444444333321111 124566666777777666 4554
Q ss_pred hhhcCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCCCCCCC
Q 009835 388 SLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNPELCGL 432 (524)
Q Consensus 388 ~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C~~ 432 (524)
...+++|++|++++|++++.+|.. ..+..+....+.+|++.|+.
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 356677777777777777666642 34566667778888887753
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=309.50 Aligned_cols=315 Identities=24% Similarity=0.254 Sum_probs=260.7
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeec-CccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcc-
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTI-SPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP- 159 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~- 159 (524)
..+++.|+++++ .+.+.+ +..|..+++|++|+|++|.+++. .|..++++++|++|++++|.+.+..|..
T Consensus 53 l~~L~~L~L~~n--------~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 123 (455)
T 3v47_A 53 LQDLQFLKVEQQ--------TPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGN 123 (455)
T ss_dssp CTTCCEEECCCC--------STTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSS
T ss_pred CccccEEECcCC--------cccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcc
Confidence 357899999985 666555 56789999999999999999886 7899999999999999999998865555
Q ss_pred -ccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcc--cCCCEEEeeCCCCCCCCCCchh
Q 009835 160 -FQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL--RSLKTLVLHSCALPPINPSSIW 236 (524)
Q Consensus 160 -~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~ 236 (524)
|.++++|++|++++|.+........+.++++|++|++++|.+++.. +..+..+ .+|+.|++++|.+.+..+....
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~ 201 (455)
T 3v47_A 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC--EEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201 (455)
T ss_dssp TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC--TTTSGGGTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC--hhhhhccccccccccccccCcccccchhhcc
Confidence 8999999999999999987765455889999999999999998874 2345544 5777777877777665543111
Q ss_pred ------hhcccCcccEEEccCCCCCCCCCCchhhhc--------------------------------------cccccE
Q 009835 237 ------HFNLSTSIETLDLSDNNLPSSSVYPWLFNL--------------------------------------SRNIQY 272 (524)
Q Consensus 237 ------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--------------------------------------~~~L~~ 272 (524)
.+.. ++|++|++++|.+.+ ..+..+... .++|+.
T Consensus 202 ~~~~~~~~~~-~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 202 WEKCGNPFKN-TSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp HHHHCCTTTT-CEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred cccccccccc-ceeeeEecCCCcccc-cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 1223 567777777776643 222222211 147999
Q ss_pred EEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEE
Q 009835 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVC 352 (524)
Q Consensus 273 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 352 (524)
|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..++ +|++|+
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~ 353 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD------KLEVLD 353 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT------TCCEEE
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc------cCCEEE
Confidence 99999999998899999999999999999999988899999999999999999999988888888766 999999
Q ss_pred cCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcc
Q 009835 353 LEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQL 415 (524)
Q Consensus 353 Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 415 (524)
+++|++++..|. +..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999998776 999999999999999999877778899999999999999999999965433
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=303.68 Aligned_cols=328 Identities=20% Similarity=0.163 Sum_probs=280.2
Q ss_pred ceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCc
Q 009835 75 GVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLL 154 (524)
Q Consensus 75 gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~ 154 (524)
+..|.... +.++.++. .++ .+|..+. +++++|+|++|.+++. .+..|.++++|++|+|++|.+.+
T Consensus 6 ~C~C~~~~---~~v~c~~~--------~l~-~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~ 70 (477)
T 2id5_A 6 RCECSAQD---RAVLCHRK--------RFV-AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSA 70 (477)
T ss_dssp TCEEETTT---TEEECCSC--------CCS-SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCE
T ss_pred CCeECCCC---CEEEeCCC--------CcC-cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCE
Confidence 34565322 24566664 343 4565553 5899999999999986 67899999999999999999999
Q ss_pred cCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc
Q 009835 155 KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234 (524)
Q Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 234 (524)
..|..|.++++|++|+|++|.+..++. ..+.++++|++|++++|.+.... +..+..+++|++|++++|.+.+..+.
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~- 146 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRLKLIPL-GVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHR- 146 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCSCCT-TSSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTT-
T ss_pred eChhhhhCCccCCEEECCCCcCCccCc-ccccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeChh-
Confidence 999999999999999999999997664 56889999999999999998774 35789999999999999999887774
Q ss_pred hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcC
Q 009835 235 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGK 314 (524)
Q Consensus 235 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 314 (524)
.+..+ ++|++|++++|.+. .+++..+...++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.....
T Consensus 147 -~~~~l-~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 147 -AFSGL-NSLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp -SSTTC-TTCCEEEEESCCCS--SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred -hccCC-CCCCEEECCCCcCc--ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence 34444 99999999999994 566665555669999999999999888888999999999999999988888877777
Q ss_pred CCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCC
Q 009835 315 MCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL 393 (524)
Q Consensus 315 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 393 (524)
..+|++|++++|.+++..+..+..++ +|+.|+|++|.+++..+. +..+++|+.|+|++|++++..|..|..++
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLV------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCT------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred CccccEEECcCCcccccCHHHhcCcc------ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 78999999999999988778888766 999999999999988776 89999999999999999999999999999
Q ss_pred CCCEEECcCCcCeeeCCCC-CcccccccccccCCCCCCC
Q 009835 394 KLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNPELCG 431 (524)
Q Consensus 394 ~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C~ 431 (524)
+|+.|++++|++++..+.. ..+..+..+.+.+||+.|+
T Consensus 297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999999999755432 3456778889999999986
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=296.59 Aligned_cols=310 Identities=20% Similarity=0.217 Sum_probs=260.5
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..++.++++++ .++...+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..|..|++
T Consensus 45 ~~l~~l~l~~~--------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp CCCSEEEEESC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCceEEEecCC--------chhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 45677777774 55544444578899999999999999885 6678999999999999999999988999999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++. ..+.++++|++|++++|.+...+ +..+..+++|++|++++|.+.+... ... +
T Consensus 116 l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l-~ 186 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDL-----SLI-P 186 (390)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSCCSBCCG-----GGC-T
T ss_pred CCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCcCCcccc-----ccc-c
Confidence 9999999999999997664 55789999999999999998875 3578999999999999999887532 333 8
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+.+. ...++|++|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|++|+
T Consensus 187 ~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 187 SLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVD 254 (390)
T ss_dssp TCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ccceeeccccccccc-------CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEE
Confidence 999999999988542 1234899999999999854 432 357899999999999854 5788999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
+++|.+++..|..+..++ +|++|++++|++++....+..+++|++|++++|+++ .+|..+..+++|++|++++
T Consensus 255 Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQ------RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CCSSCCCEEESGGGTTCS------SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred CCCCcCCCcChhHccccc------cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCC
Confidence 999999998888888766 999999999999987666888999999999999998 5677788999999999999
Q ss_pred CcCeeeCCCCCcccccccccccCCCCCCC
Q 009835 403 NSFTGKIPLGTQLQSFNASVYAGNPELCG 431 (524)
Q Consensus 403 N~l~~~~p~~~~~~~~~~~~~~gn~~~C~ 431 (524)
|+++.. | ...+..+....+.+|++.|+
T Consensus 328 N~i~~~-~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 328 NSIVTL-K-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred Ccccee-C-chhhccCCEEEcCCCCccch
Confidence 999854 4 34567788888999999885
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=322.42 Aligned_cols=293 Identities=27% Similarity=0.325 Sum_probs=234.9
Q ss_pred CCcceeecCccccC--CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCC
Q 009835 100 GTVLKGTISPALLK--LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLF 177 (524)
Q Consensus 100 ~~~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (524)
+|.+++.+|+.+.. +++|++|++++|.+++. +|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 34666666666665 67777777777777765 7777888888888888888888888888888888888888888877
Q ss_pred CCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCC
Q 009835 178 SLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS 257 (524)
Q Consensus 178 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 257 (524)
+.. +..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|. ++..+ ++|++|++++|.+.+
T Consensus 456 ~~~-p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l-~~L~~L~L~~N~l~~- 528 (768)
T 3rgz_A 456 GEI-PQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGEIPK--WIGRL-ENLAILKLSNNSFSG- 528 (768)
T ss_dssp SCC-CGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCCG--GGGGC-TTCCEEECCSSCCEE-
T ss_pred CcC-CHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCCCEEEccCCccCCcCCh--HHhcC-CCCCEEECCCCcccC-
Confidence 433 356778888888888888887653 35678888888888888888877774 44555 888888888888866
Q ss_pred CCCchhhhccccccEEEeeccccccccchhh-------------------------------------------------
Q 009835 258 SVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF------------------------------------------------- 288 (524)
Q Consensus 258 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~------------------------------------------------- 288 (524)
.+|..+.... +|+.|++++|.++|.+|..+
T Consensus 529 ~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 529 NIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp ECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred cCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 6676666655 88888888888877666543
Q ss_pred ---------------------hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 289 ---------------------QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 289 ---------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
..+++|+.|++++|+++|.+|..++.+++|+.|+|++|.+++.+|..++.++ +
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~------~ 681 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR------G 681 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT------T
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC------C
Confidence 3356789999999999999999999999999999999999999999999877 9
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeee
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
|+.|+|++|+++|.+|. +.++++|++|++++|+++|.+|.. +.+..+....+.+|+-.+-
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 99999999999999987 999999999999999999999964 3445556667778875543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=313.82 Aligned_cols=322 Identities=20% Similarity=0.238 Sum_probs=201.1
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceee-----------------cCcccc--CCCCCCEEEccCCCCCCCCCccccCCCCCC
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGT-----------------ISPALL--KLHDLRHLDLSNNHFGGSPLPEFIGSLSRL 142 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L 142 (524)
..+++.|+|+++ .+++. +|+.++ ++++|++|++++|.+.+. +|..++++++|
T Consensus 205 l~~L~~L~Ls~n--------~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L 275 (636)
T 4eco_A 205 LTKLRQFYMGNS--------PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEM 275 (636)
T ss_dssp CTTCCEEEEESC--------CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSC
T ss_pred ccCCCEEECcCC--------ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCC
Confidence 357899999995 67775 999999 999999999999999987 99999999999
Q ss_pred CEEEccCCC-CCc-cCCccccCC------CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCC-CCCCchHhhhc
Q 009835 143 RYLNLSCGT-SLL-KVPRPFQYL------SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLT-KSSDWFQVVAK 213 (524)
Q Consensus 143 ~~L~L~~n~-~~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~l~~ 213 (524)
++|++++|. +++ .+|..++++ ++|++|++++|.++.++....+.++++|++|++++|.++ ..+ .+..
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~ 351 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGS 351 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----hhCC
Confidence 999999998 888 888888776 899999999999985553237889999999999999888 333 4455
Q ss_pred ccCCCEEEeeCCCCCCCCCCchhhhcccCc-ccEEEccCCCCCCCCCCchhhhc-cccccEEEeeccccccccchhhh--
Q 009835 214 LRSLKTLVLHSCALPPINPSSIWHFNLSTS-IETLDLSDNNLPSSSVYPWLFNL-SRNIQYLNLGFNSLQGSIPEAFQ-- 289 (524)
Q Consensus 214 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~-- 289 (524)
+++|++|++++|.+.. .|. .+... ++ |++|++++|.+. .+|..+... .++|++|++++|.+++.+|..+.
T Consensus 352 l~~L~~L~L~~N~l~~-lp~--~l~~l-~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 352 EIKLASLNLAYNQITE-IPA--NFCGF-TEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EEEESEEECCSSEEEE-CCT--TSEEE-CTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCCCEEECCCCcccc-ccH--hhhhh-cccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 5555555555555542 221 22333 44 555555555542 233322211 11344444444444444444333
Q ss_pred -----------------------------cccccceEeecCcccccccch-hhcCCC-------CCCEEEccCCCCCCch
Q 009835 290 -----------------------------LMVSLRFLYLTSNELEGGIPK-FFGKMC-------SLNRLCLPYNKLSGDL 332 (524)
Q Consensus 290 -----------------------------~l~~L~~L~Ls~n~l~~~~p~-~l~~l~-------~L~~L~Ls~n~l~~~~ 332 (524)
.+++|++|++++|.++ .+|. .+.... +|++|++++|.++ .+
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-cc
Confidence 3455555555555555 2222 222111 5555555555555 23
Q ss_pred hHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEc------cCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 333 SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVL------GENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 333 ~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
|..+.. ..+++|+.|+|++|++++.+..+.++++|++|+| ++|++.+.+|..+..+++|++|++++|++
T Consensus 504 p~~~~~----~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 504 SDDFRA----TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp CGGGST----TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred Chhhhh----ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 333320 0123666666666666663333666666666666 34555666666666666666666666666
Q ss_pred eeCCCCCcccccccccccCCCCCC
Q 009835 407 GKIPLGTQLQSFNASVYAGNPELC 430 (524)
Q Consensus 407 ~~~p~~~~~~~~~~~~~~gn~~~C 430 (524)
+.+|.... ..+....+.+|+..|
T Consensus 579 ~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 579 RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred CccCHhHh-CcCCEEECcCCCCcc
Confidence 55665422 555556666666655
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=306.26 Aligned_cols=321 Identities=23% Similarity=0.264 Sum_probs=197.8
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..|..|..+++|++|++++|.+++. .|..|.++++|++|+|++|.+.. +|.. .
T Consensus 21 ~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQN--------YISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVK-ISCH--P 88 (520)
T ss_dssp TTCSEEECCSS--------CCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCE-EECC--C
T ss_pred ccccEEECCCC--------cccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCceee-cCcc--c
Confidence 46777777774 55555556677777777777777777664 56677777777777777777663 4433 6
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCC--CEEEeeCCCC--CCCCCCchhhh
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL--KTLVLHSCAL--PPINPSSIWHF 238 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~ 238 (524)
+++|++|++++|.+..++.+..++++++|++|++++|.++.. .+..+++| ++|++++|.+ .+..|..+...
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeeccccccccccccccccc
Confidence 677777777777776555445667777777777777766541 34444555 5555555555 22222110000
Q ss_pred c------------------------c------------------------------------------------------
Q 009835 239 N------------------------L------------------------------------------------------ 240 (524)
Q Consensus 239 ~------------------------~------------------------------------------------------ 240 (524)
. +
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 0 0
Q ss_pred --cCcccEEEccCCCCCCCCCCchh----------------------------h------------------------hc
Q 009835 241 --STSIETLDLSDNNLPSSSVYPWL----------------------------F------------------------NL 266 (524)
Q Consensus 241 --~~~L~~L~L~~n~l~~~~~~~~~----------------------------~------------------------~~ 266 (524)
.++|++|++++|.+.+ .+|..+ . ..
T Consensus 244 ~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQG-QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HHTSSCSEEEEEEEEEES-CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhCcccEEEeecccccC-ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 0134444444444332 222222 0 22
Q ss_pred cccccEEEeeccccccccchhhhcccccceEeecCccccc--ccchhhcCCCCCCEEEccCCCCCCchhHH-HHhccCCC
Q 009835 267 SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG--GIPKFFGKMCSLNRLCLPYNKLSGDLSEM-IQNLSGGC 343 (524)
Q Consensus 267 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~~~ 343 (524)
.++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +..
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~----- 397 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW----- 397 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC-----
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc-----
Confidence 2356666666666666566666666666666666666664 34455666666666666666666533332 333
Q ss_pred CCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC--Cccccccc
Q 009835 344 TMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNA 420 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~ 420 (524)
+++|++|++++|++++..+. +. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+..
T Consensus 398 -l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 398 -TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp -CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred -CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 23677777777777665543 32 67888888888887 67777778899999999999888 46653 34666777
Q ss_pred ccccCCCCCCC
Q 009835 421 SVYAGNPELCG 431 (524)
Q Consensus 421 ~~~~gn~~~C~ 431 (524)
..+.+||+.|+
T Consensus 473 L~l~~N~~~c~ 483 (520)
T 2z7x_B 473 IWLHTNPWDCS 483 (520)
T ss_dssp EECCSSCBCCC
T ss_pred EECcCCCCccc
Confidence 78899998885
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=307.67 Aligned_cols=321 Identities=22% Similarity=0.250 Sum_probs=224.4
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..+..|..+++|++|+|++|.+++. .|..|.++++|++|+|++|.+. .+|.. .
T Consensus 52 ~~L~~L~Ls~N--------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQN--------SISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSS--------CCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCC--------CccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 57888999885 67777777899999999999999999886 6888999999999999999887 45555 7
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCC--CEEEeeCCCC--CCCCCCchhhh
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL--KTLVLHSCAL--PPINPSSIWHF 238 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~ 238 (524)
+++|++|++++|.+..++.+..+.++++|++|++++|.++.. .+..+++| ++|++++|.+ .+..+..+...
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCccccccc
Confidence 899999999999988776667788999999999999988763 23444555 8888888877 44443311100
Q ss_pred c-----------------------cc------------------------------------------------------
Q 009835 239 N-----------------------LS------------------------------------------------------ 241 (524)
Q Consensus 239 ~-----------------------~~------------------------------------------------------ 241 (524)
. .+
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 0 00
Q ss_pred -CcccEEEccCCCCCCCCCCchhh----------------------------------------------------hccc
Q 009835 242 -TSIETLDLSDNNLPSSSVYPWLF----------------------------------------------------NLSR 268 (524)
Q Consensus 242 -~~L~~L~L~~n~l~~~~~~~~~~----------------------------------------------------~~~~ 268 (524)
++|++|++++|.+.+ .+|..++ ...+
T Consensus 275 ~~~L~~L~l~~n~l~~-~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 275 PRPVEYLNIYNLTITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TSSEEEEEEEEEEECS-CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred cccccEEEEeccEeec-cccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 145555555555543 3333221 2233
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCccccc--ccchhhcCCCCCCEEEccCCCCCCchhH-HHHhccCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG--GIPKFFGKMCSLNRLCLPYNKLSGDLSE-MIQNLSGGCTM 345 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~~~~~ 345 (524)
+|++|++++|.+++.+|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|.+++.+|. .+.. +
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------l 427 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------A 427 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC------C
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC------c
Confidence 66666666666666666666666677777777776664 2244566666777777777766653332 2333 2
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC--Cccccccccc
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNASV 422 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~ 422 (524)
++|++|++++|++++..+. +. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+....
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence 3677777777777665544 22 68888888888887 67777778899999999999998 45553 4566777778
Q ss_pred ccCCCCCCC
Q 009835 423 YAGNPELCG 431 (524)
Q Consensus 423 ~~gn~~~C~ 431 (524)
+.+||+.|+
T Consensus 504 l~~N~~~c~ 512 (562)
T 3a79_B 504 LHDNPWDCT 512 (562)
T ss_dssp CCSCCBCCC
T ss_pred ecCCCcCCC
Confidence 899999885
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=305.90 Aligned_cols=159 Identities=22% Similarity=0.250 Sum_probs=103.5
Q ss_pred cccEEEeecccccccc--chhhhcccccceEeecCcccc-----------------------cccc-hhhcCCCCCCEEE
Q 009835 269 NIQYLNLGFNSLQGSI--PEAFQLMVSLRFLYLTSNELE-----------------------GGIP-KFFGKMCSLNRLC 322 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~p-~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+++.. +..+..+++|++|++++|.+. +..+ ..+..+++|++|+
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 5556666666555332 444555555555555555444 3333 2344555555555
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCc-cCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT-GPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
+++|.+.+..+..+..+ ++|++|++++|.++ +..|. +..+++|++|++++|++++..|..+..+++|++|++
T Consensus 428 l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGL------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CTTSCCEECCTTTTTTC------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCCcccccchhhhhcC------CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 55555555554444443 47888888888876 34454 788888888888888888777888888888888888
Q ss_pred cCCcCeeeCCCC-CcccccccccccCCCCCCCCC
Q 009835 401 GRNSFTGKIPLG-TQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 401 ~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C~~~ 433 (524)
++|++++..|.. ..+..+....+.+|++.|+.+
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 888888766643 346667777888888887543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=305.27 Aligned_cols=327 Identities=19% Similarity=0.175 Sum_probs=207.5
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..++.|+|+++ .+++..|..|.++++|++|+|++|.+.+. .|..|.++++|++|+|++|.+.+..|..|++
T Consensus 33 ~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFN--------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TTCCEEECTTC--------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCcEEEccCC--------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 57899999995 77777788888888888888888888876 6788888888888888888888888888888
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++. ..+.++++|++|++++|.+.+... ..+..+++|++|++++|.+.+..+. .+... +
T Consensus 104 l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l-~ 177 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKLKVLDFQNNAIHYLSKE--DMSSL-Q 177 (606)
T ss_dssp CTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCC--CTTCCCTTCCEEECCSSCCCEECHH--HHHTT-T
T ss_pred cccccEeeccccCcccCCc-chhccCCcccEEECCCCcccccCc--ccccCCcccCEEEcccCcccccChh--hhhhh-c
Confidence 8888888888888876432 347788888888888888776521 1333467777777777776655442 22222 5
Q ss_pred ccc--EEEccCCCCCCCCCCchhhhcc---------------------------------------------------cc
Q 009835 243 SIE--TLDLSDNNLPSSSVYPWLFNLS---------------------------------------------------RN 269 (524)
Q Consensus 243 ~L~--~L~L~~n~l~~~~~~~~~~~~~---------------------------------------------------~~ 269 (524)
+|+ +|++++|.+.+ +++..+... .+
T Consensus 178 ~L~~l~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAG--IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TCCSEEEECTTCCCCE--ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred ccceeEEecCCCccCc--cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 555 56666665532 111111100 03
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC--------
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG-------- 341 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-------- 341 (524)
|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..++.
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 455555555555544444555555666666665555 44555555555666666655555554544444330
Q ss_pred -----------CCCCCCccEEEcCCCCCccCC--C-CCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 342 -----------GCTMNSLEGVCLEGNDITGPL--P-DLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 342 -----------~~~~~~L~~L~Ls~n~l~~~~--~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
...+++|++|++++|.+++.. + .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 112336666666666666543 2 26666667777777776666666666667777777777777666
Q ss_pred eCCCC--CcccccccccccCCC
Q 009835 408 KIPLG--TQLQSFNASVYAGNP 427 (524)
Q Consensus 408 ~~p~~--~~~~~~~~~~~~gn~ 427 (524)
..|.. ..+..+....+.+|.
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCC
T ss_pred cccchhhhCcccCCEEECCCCc
Confidence 55432 234555555555554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=307.17 Aligned_cols=309 Identities=20% Similarity=0.217 Sum_probs=250.9
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.++.+++++ +.+....+..+..+++|++|+|++|.+++. .|..|+.+++|++|+|++|.+.+..|..|+++
T Consensus 52 ~l~~l~l~~--------~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 52 NQKIVTFKN--------STMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCSEEEESS--------CEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEeeC--------CCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 345666666 366655555678899999999999999986 67799999999999999999999988899999
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCc
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 243 (524)
++|++|+|++|.+..++. ..|.++++|++|++++|.+++.+ +..+..+++|++|++++|.+.+... ..+ ++
T Consensus 123 ~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~-----~~l-~~ 193 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDL-----SLI-PS 193 (597)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSCCSBCCG-----GGC-TT
T ss_pred CCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCCCCCcCh-----hhh-hh
Confidence 999999999999997664 55789999999999999998875 3578999999999999999987632 233 88
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEc
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 323 (524)
|+.|++++|.+.+.. .+.+|+.|++++|.++.. +..+ .++|+.|++++|.+++ +..+..+++|+.|+|
T Consensus 194 L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 194 LFHANVSYNLLSTLA-------IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDL 261 (597)
T ss_dssp CSEEECCSSCCSEEE-------CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEEC
T ss_pred hhhhhcccCcccccc-------CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEEC
Confidence 999999999885421 223788999999988743 3222 3678899999998885 356888889999999
Q ss_pred cCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCC
Q 009835 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403 (524)
Q Consensus 324 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 403 (524)
++|.+++..|..+..++ +|+.|+|++|.+++.+..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 262 s~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQ------RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CSSCCCEEESGGGTTCS------SCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CCCccCCCCHHHhcCcc------CCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 99998888888887765 899999999998887666777889999999999888 57777888889999999999
Q ss_pred cCeeeCCCCCcccccccccccCCCCCCC
Q 009835 404 SFTGKIPLGTQLQSFNASVYAGNPELCG 431 (524)
Q Consensus 404 ~l~~~~p~~~~~~~~~~~~~~gn~~~C~ 431 (524)
++++. | ...+..+..+.+.+||+.|.
T Consensus 335 ~l~~~-~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 335 SIVTL-K-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCc-C-hhhcCCCCEEEeeCCCCCCh
Confidence 88754 3 23456777778888888774
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=309.67 Aligned_cols=308 Identities=22% Similarity=0.206 Sum_probs=251.7
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.++.|+++++ .+++..+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+.+..|..+.++
T Consensus 255 ~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKH--------YFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTC--------CCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecC--------ccCccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 6888888885 6777667778889999999999998885 78888889999999999999888888888999
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCc
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 243 (524)
++|++|++++|.+........+..+++|++|++++|.+.+....+..+..+++|++|++++|.+.+..+. .+... ++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l-~~ 401 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE--AFKEC-PQ 401 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT--TTTTC-TT
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH--HhcCC-cc
Confidence 9999999999987743333557889999999999998877632245688889999999999988877664 33444 88
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccc---cchhhcCCCCCCE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG---IPKFFGKMCSLNR 320 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~ 320 (524)
|++|++++|.+.+ ..++..+...++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 402 L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 402 LELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp CSEEECTTCCEEC-CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCeEECCCCcCCC-cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 9999999998865 44444344445899999999999888888888899999999999988763 2356888899999
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEE
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 399 (524)
|++++|.+++..|..+..++ +|++|++++|++++..|. +.++++| .|++++|++++..|..+..+++|+.|+
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLK------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp EECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred EECCCCccCccChhhhcccc------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 99999999888888777765 899999999999888776 8888899 999999999988888888889999999
Q ss_pred CcCCcCeeeCCCC
Q 009835 400 LGRNSFTGKIPLG 412 (524)
Q Consensus 400 l~~N~l~~~~p~~ 412 (524)
+++|++.|.++..
T Consensus 554 l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 554 LRQNPLDCTCSNI 566 (606)
T ss_dssp CTTCCEECSGGGH
T ss_pred CCCCCccccCCcH
Confidence 9999999887753
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=304.88 Aligned_cols=314 Identities=24% Similarity=0.306 Sum_probs=183.5
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..+..|.++++|++|++++|.+++. .|..++++++|++|+|++|.+.+..+..|++
T Consensus 25 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHN--------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSS--------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 57888999885 56655555677777777777777777765 6667777777777777777776655556777
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++. ..+.++++|++|++++|.+++.. +..+.++++|++|++++|.+.+..+..+..... +
T Consensus 96 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~ 171 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFAN-S 171 (680)
T ss_dssp CTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT-C
T ss_pred CCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhcccc-c
Confidence 7777777777777765443 44667777777777777776653 235566777777777777766655432222233 5
Q ss_pred cccEEEccCCCCCCCCCCchhhhc--------------------------cccccEEEeeccccccccchhhhcccc--c
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNL--------------------------SRNIQYLNLGFNSLQGSIPEAFQLMVS--L 294 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~--------------------------~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L 294 (524)
+|++|++++|.+.+ ..+..+... .++|+.|++++|.+++..|..+..++. |
T Consensus 172 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 172 SLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp EESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred cccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 66666666666643 222111110 023444555555555444444444433 5
Q ss_pred ceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhcc---------------------------CCCCCCC
Q 009835 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLS---------------------------GGCTMNS 347 (524)
Q Consensus 295 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------------~~~~~~~ 347 (524)
+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..++ ....+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 5555555555544444455555555555555554444433332221 1122446
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEc----------------------------cCCcCccccchhhhcCCCCCEE
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVL----------------------------GENRLNGTIDKSLSQLLKLESL 398 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~L----------------------------s~N~l~~~~p~~~~~l~~L~~L 398 (524)
|++|++++|.+++..+. +.++++|++|++ ++|++++..|..+..+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 66666666666665543 444444444443 4444555556666777777777
Q ss_pred ECcCCcCeeeCC
Q 009835 399 SLGRNSFTGKIP 410 (524)
Q Consensus 399 ~l~~N~l~~~~p 410 (524)
++++|++++.+|
T Consensus 411 ~L~~N~l~~~~~ 422 (680)
T 1ziw_A 411 DLGLNEIGQELT 422 (680)
T ss_dssp ECCSSCCEEECC
T ss_pred eCCCCcCccccC
Confidence 777777776665
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=303.45 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=129.1
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCccccc-ccchhhcCCCCCCE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPKFFGKMCSLNR 320 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~ 320 (524)
++|++|++++|.+.+ ..+...+...++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++
T Consensus 399 ~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 399 EELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp TTCCEEECTTSEEES-TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCeeECCCCccCC-ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 344444444444433 2221223333478888888888877777778888888888888888886 36778888889999
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCC-CCCEE
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL-KLESL 398 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L 398 (524)
|++++|.+++..|..+..++ +|++|++++|++++..|. +.++++|++|++++|+++ .+|..+..++ +|++|
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLH------RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp EECTTSCCCEECTTTTTTCT------TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred EECCCCcCCccChhhhcccc------cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence 99999998888887777665 999999999999998776 999999999999999999 6777799987 59999
Q ss_pred ECcCCcCeeeCCCCC
Q 009835 399 SLGRNSFTGKIPLGT 413 (524)
Q Consensus 399 ~l~~N~l~~~~p~~~ 413 (524)
++++|++.+.++...
T Consensus 551 ~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 551 NLTNNSVACICEHQK 565 (606)
T ss_dssp ECCSCCCCCSSTTHH
T ss_pred EccCCCcccCCccHH
Confidence 999999999888643
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=303.15 Aligned_cols=331 Identities=23% Similarity=0.219 Sum_probs=242.8
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..+++|||+++ .+++..+.+|.++++|++|||++|.+++. .+.+|.++++|++|+|++|++.+..+..|.+
T Consensus 52 ~~~~~LdLs~N--------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeCC--------CCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 47899999995 78877778899999999999999998875 5677889999999999999988877778899
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchh------
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW------ 236 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------ 236 (524)
+++|++|+|++|+++.++. ..|+++++|++|++++|.++.... +..+..+++|++|++++|.+.+..+..+.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp CTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCccccccccccccchhhhh
Confidence 9999999999998887654 457888999999999998876532 45778888888888888876543221000
Q ss_pred --------------------------------------------------------------------------------
Q 009835 237 -------------------------------------------------------------------------------- 236 (524)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (524)
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ------------------------------------------hhcc----------------------------------
Q 009835 237 ------------------------------------------HFNL---------------------------------- 240 (524)
Q Consensus 237 ------------------------------------------~~~~---------------------------------- 240 (524)
....
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence 0000
Q ss_pred ---------cCcccEEEccCCCCCCC-CCCchhhhccccccEEEeecccc-----------------------cccc-ch
Q 009835 241 ---------STSIETLDLSDNNLPSS-SVYPWLFNLSRNIQYLNLGFNSL-----------------------QGSI-PE 286 (524)
Q Consensus 241 ---------~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~l-----------------------~~~~-~~ 286 (524)
+++|+.|+++.|.+... ..+...... .+|+.+++..+.+ .... +.
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred CCCCcccccccccccchhhccccccccccccchhhh-hhhhhhhccccccccccccccccccccchhhhhcccccccccc
Confidence 02223333333322110 001111111 2445555544433 3222 23
Q ss_pred hhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC-CchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-
Q 009835 287 AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS-GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD- 364 (524)
Q Consensus 287 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~- 364 (524)
.+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..|..++ +|++|+|++|++++.+|.
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTTT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------ccCEEECCCCccCCcChHH
Confidence 4556777788888888888777778888888888888888643 34555565554 999999999999998887
Q ss_pred CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCc-c-cccccccccCCCCCCC
Q 009835 365 LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQ-L-QSFNASVYAGNPELCG 431 (524)
Q Consensus 365 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~-~~~~~~~~~gn~~~C~ 431 (524)
|.++++|++|+|++|++++..|..|.++++|++||+++|++++..|.... + ..+....+.+|||.|+
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999998899999999999999999999998886532 2 5677788999999996
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=304.90 Aligned_cols=324 Identities=23% Similarity=0.187 Sum_probs=191.0
Q ss_pred cceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCc-----cCCc----cccCCCCCcEEEcc
Q 009835 102 VLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLL-----KVPR----PFQYLSGLVYLHLE 172 (524)
Q Consensus 102 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~-----~~p~----~~~~l~~L~~L~L~ 172 (524)
.+++..|..+..+++|++|++++|.+.+. .|..+..+++|++|++++|...+ .+|. .|..+++|++|+++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred CcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 45555555555556666666666555554 44455555555555555433221 1221 34455555555555
Q ss_pred CCCCCCCCCchhcCCCCCCcEEEccCCCC----------------------------CCCCCchHhhhcccCCCEEEeeC
Q 009835 173 NSNLFSLGSLQWLSHLSSLRHLDLSYINL----------------------------TKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 173 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l----------------------------~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
+|.+..... ..+.++++|++|++++|.+ ++.. +..+..+++|++|++++
T Consensus 338 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 338 DNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp SCCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCS
T ss_pred CCccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC--hhhhhCCCCCCEEeCCC
Confidence 555554332 3345555555555555442 2221 12334444444444444
Q ss_pred CCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccc--cccchhhhcccccceEeecCc
Q 009835 225 CALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ--GSIPEAFQLMVSLRFLYLTSN 302 (524)
Q Consensus 225 n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n 302 (524)
|.+.+..+. ..+..+++|++|++++|.+.+ +.+..+...++|+.|++++|.+. +.+|..+..+++|+.|++++|
T Consensus 415 N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 415 NEIGQELTG--QEWRGLENIFEIYLSYNKYLQ--LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp SCCEEECCS--GGGTTCTTCCEEECCSCSEEE--CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred CcCccccCc--ccccCcccccEEecCCCCcce--eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 444332221 111222444444444444422 12222222335555555555544 345666777777777777777
Q ss_pred ccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhc--cCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCC
Q 009835 303 ELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNL--SGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGEN 379 (524)
Q Consensus 303 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N 379 (524)
.+++..+..+.++++|++|++++|.+++..+..+... .....+++|++|++++|+++..++. +.++++|+.|+|++|
T Consensus 491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence 7776666667777778888888877765433221110 0123355899999999999976665 889999999999999
Q ss_pred cCccccchhhhcCCCCCEEECcCCcCeeeCCCCC--cccccccccccCCCCCCCCC
Q 009835 380 RLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT--QLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 380 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~gn~~~C~~~ 433 (524)
++++..+..|..+++|+.|++++|++++..|... .+..+....+.+|||.|+..
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9997777778899999999999999997666432 45677888899999999654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-34 Score=310.70 Aligned_cols=326 Identities=17% Similarity=0.179 Sum_probs=208.9
Q ss_pred CCcEEEEEcCCCCCCCCCCCccee-----------------ecCcccc--CCCCCCEEEccCCCCCCCCCccccCCCCCC
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKG-----------------TISPALL--KLHDLRHLDLSNNHFGGSPLPEFIGSLSRL 142 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L 142 (524)
..+++.|+|+++ .+++ .+|+.++ ++++|++|+|++|.+.+. +|..+.++++|
T Consensus 447 L~~L~~L~Ls~N--------~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L 517 (876)
T 4ecn_A 447 LTKLQIIYFANS--------PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPEL 517 (876)
T ss_dssp CTTCCEEEEESC--------CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSC
T ss_pred CCCCCEEECcCC--------cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCC
Confidence 357899999986 5666 4899888 999999999999998887 89999999999
Q ss_pred CEEEccCCC-CCc-cCCccccCCC-------CCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhc
Q 009835 143 RYLNLSCGT-SLL-KVPRPFQYLS-------GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 213 (524)
Q Consensus 143 ~~L~L~~n~-~~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 213 (524)
++|+|++|. +++ .+|..+++++ +|++|+|++|.+..++....+.++++|++|++++|.++..+ .+..
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE----AFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC----CCCT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch----hhcC
Confidence 999999998 887 7787665554 89999999998885553236888888889998888887443 6777
Q ss_pred ccCCCEEEeeCCCCCCCCCCchhhhcccCc-ccEEEccCCCCCCCCCCchhhhcc-ccccEEEeeccccccccchh---h
Q 009835 214 LRSLKTLVLHSCALPPINPSSIWHFNLSTS-IETLDLSDNNLPSSSVYPWLFNLS-RNIQYLNLGFNSLQGSIPEA---F 288 (524)
Q Consensus 214 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~---~ 288 (524)
+++|+.|++++|.+. ..|. .+..+ ++ |++|++++|.+. .+|..+.... ++|+.|++++|.+++.+|.. +
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~--~l~~l-~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPE--DFCAF-TDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp TSEESEEECCSSCCS-CCCT--TSCEE-CTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred CCcceEEECcCCccc-cchH--HHhhc-cccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 888888888888877 3442 44555 66 888888888773 4554433322 13777777777776554421 1
Q ss_pred h--cccccceEeecCcccccccchh-hcCCCCCCEEEccCCCCCCchhHHHHhcc-CCCCCCCccEEEcCCCCCccCCCC
Q 009835 289 Q--LMVSLRFLYLTSNELEGGIPKF-FGKMCSLNRLCLPYNKLSGDLSEMIQNLS-GGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 289 ~--~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
. .+++|+.|++++|.++ .+|.. +..+++|+.|+|++|.++...+..+.... ....+++|+.|+|++|+++..+..
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence 1 2335666666666666 33333 33566666666666666633222221110 011122566666666666533333
Q ss_pred CC--CCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC------CcCeeeCCCC-CcccccccccccCCCC
Q 009835 365 LG--GFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR------NSFTGKIPLG-TQLQSFNASVYAGNPE 428 (524)
Q Consensus 365 ~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~-~~~~~~~~~~~~gn~~ 428 (524)
+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|.. ..+..+....+.+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 43 55666666666666654 455555666666666544 4555555533 2244444455555543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=283.81 Aligned_cols=309 Identities=22% Similarity=0.205 Sum_probs=260.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+++..+..+..+++|++|++++|.+++. .|..++.+++|++|++++|.+....+..|.+
T Consensus 69 ~~L~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 69 RQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp CCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCcEEECCCC--------cccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 57889999985 78887788999999999999999999986 7788999999999999999999766666899
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++. ..+.++++|++|++++|.++..+ +..+++|+.|++++|.+.+... .+
T Consensus 140 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n~l~~~~~--------~~ 205 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAI--------PI 205 (390)
T ss_dssp CTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSSCCSEEEC--------CS
T ss_pred CCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccc-----cccccccceeecccccccccCC--------CC
Confidence 9999999999999986654 56899999999999999998763 5778999999999998875433 27
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+.. ++.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 206 ~L~~L~l~~n~l~~--~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 206 AVEELDASHNSINV--VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp SCSEEECCSSCCCE--EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cceEEECCCCeeee--cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 89999999999943 3332 235899999999999864 5788999999999999999988899999999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
+++|.+++. +..+. .+++|++|++++|++++.++.+..+++|+.|++++|.+++. + +..+++|+.|++++
T Consensus 279 L~~n~l~~~-~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 279 ISNNRLVAL-NLYGQ------PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCSSCCCEE-ECSSS------CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred CCCCcCccc-CcccC------CCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCC
Confidence 999999864 33333 34599999999999997766788899999999999999854 3 67889999999999
Q ss_pred CcCeeeCCCCCcccccccccccCCCCCCCC
Q 009835 403 NSFTGKIPLGTQLQSFNASVYAGNPELCGL 432 (524)
Q Consensus 403 N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~ 432 (524)
|++.+.... ..+..+....+.+++..|..
T Consensus 349 N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 349 NDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp SCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred CCccchhHH-HHHHHHHhhcccccCceecc
Confidence 999976432 33445555567777777754
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=298.54 Aligned_cols=141 Identities=20% Similarity=0.285 Sum_probs=122.4
Q ss_pred cccEEEeeccccccccc-hhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC-CchhHHHHhccCCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIP-EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS-GDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~~~~~~ 346 (524)
+|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++ +..|..+..++
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~------ 470 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------ 470 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc------
Confidence 66666666666665544 46778899999999999999989999999999999999999987 46776666655
Q ss_pred CccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcc
Q 009835 347 SLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQL 415 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 415 (524)
+|++|++++|++++..|. +..+++|++|++++|++++..|..+.++++|+.|++++|+++|.+|....+
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999999998776 899999999999999999888888999999999999999999999976544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=288.36 Aligned_cols=311 Identities=21% Similarity=0.228 Sum_probs=237.8
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
+.+|++++ .++ .+|..+. ++|++|++++|.+++. .|..|.++++|++|+|++|.+.+..|..|+++++
T Consensus 3 ~~l~ls~n--------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKN--------GLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTS--------CCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred ceEecCCC--------Ccc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence 35788885 666 5777666 8999999999999986 6789999999999999999999999999999999
Q ss_pred CcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc-
Q 009835 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI- 244 (524)
Q Consensus 166 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L- 244 (524)
|++|+|++|.++.++.. .+++|++|++++|.+++.+. +..++++++|++|++++|.+.+. .+... ++|
T Consensus 71 L~~L~Ls~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~-p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l-~~L~ 139 (520)
T 2z7x_B 71 LEYLDLSHNKLVKISCH----PTVNLKHLDLSFNAFDALPI-CKEFGNMSQLKFLGLSTTHLEKS-----SVLPI-AHLN 139 (520)
T ss_dssp CCEEECCSSCCCEEECC----CCCCCSEEECCSSCCSSCCC-CGGGGGCTTCCEEEEEESSCCGG-----GGGGG-TTSC
T ss_pred CCEEecCCCceeecCcc----ccCCccEEeccCCccccccc-hhhhccCCcceEEEecCcccchh-----hcccc-ccce
Confidence 99999999999866542 89999999999999987532 46899999999999999998762 33334 777
Q ss_pred -cEEEccCCCC--CCCCCCchhhhc-------------------------------------------------------
Q 009835 245 -ETLDLSDNNL--PSSSVYPWLFNL------------------------------------------------------- 266 (524)
Q Consensus 245 -~~L~L~~n~l--~~~~~~~~~~~~------------------------------------------------------- 266 (524)
++|++++|.+ .+ ..+..+...
T Consensus 140 L~~L~l~~n~l~~~~-~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 218 (520)
T 2z7x_B 140 ISKVLLVLGETYGEK-EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218 (520)
T ss_dssp EEEEEEEECTTTTSS-CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG
T ss_pred eeEEEeecccccccc-cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc
Confidence 9999999988 33 223222210
Q ss_pred ---------------------------cccccEEEeeccccccccchhh-------------------------------
Q 009835 267 ---------------------------SRNIQYLNLGFNSLQGSIPEAF------------------------------- 288 (524)
Q Consensus 267 ---------------------------~~~L~~L~Ls~n~l~~~~~~~~------------------------------- 288 (524)
.++|++|++++|.+++.+|..+
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~ 298 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcc
Confidence 1268888888888876666544
Q ss_pred ----------------------hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCC--chhHHHHhccCCCC
Q 009835 289 ----------------------QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG--DLSEMIQNLSGGCT 344 (524)
Q Consensus 289 ----------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~~~~ 344 (524)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ ..|..+..++
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~---- 374 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK---- 374 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT----
T ss_pred cccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC----
Confidence 455677777777777777777777778888888888888776 3445666554
Q ss_pred CCCccEEEcCCCCCccCCC-C-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC-Ccccccccc
Q 009835 345 MNSLEGVCLEGNDITGPLP-D-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNAS 421 (524)
Q Consensus 345 ~~~L~~L~Ls~n~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~ 421 (524)
+|++|++++|.+++.+| . +..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|.. ..+..+...
T Consensus 375 --~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 375 --SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp --TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred --CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 78888888888887333 3 67778888888888888777666553 67888888888887 55542 345666666
Q ss_pred cccCCCCC
Q 009835 422 VYAGNPEL 429 (524)
Q Consensus 422 ~~~gn~~~ 429 (524)
.+.+|...
T Consensus 450 ~L~~N~l~ 457 (520)
T 2z7x_B 450 NVASNQLK 457 (520)
T ss_dssp ECCSSCCC
T ss_pred ECCCCcCC
Confidence 77777643
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=297.22 Aligned_cols=310 Identities=22% Similarity=0.201 Sum_probs=263.6
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..|..|..+++|++|+|++|.+++. .|..|+.+++|++|+|++|.+.+..+..|++
T Consensus 75 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--------CCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 46888999885 78888888999999999999999999996 7788999999999999999999777777899
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|+|++|.+...+. ..+.++++|++|++++|.+++.+ +..+++|+.|++++|.+.+... +.
T Consensus 146 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~l~~--------~~ 211 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAI--------PI 211 (597)
T ss_dssp CTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSEEEC--------CT
T ss_pred CCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCccccccC--------Cc
Confidence 9999999999999986654 56899999999999999998763 5678999999999998876433 27
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|+.|++++|.+.. ++... .++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+
T Consensus 212 ~L~~L~ls~n~l~~--~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 212 AVEELDASHNSINV--VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp TCSEEECCSSCCCE--EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred hhheeeccCCcccc--ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 89999999999843 33322 2489999999999986 36789999999999999999999999999999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
|++|.+++. |..+.. +++|+.|+|++|.+++.++.+..+++|+.|+|++|.+++. + +..+++|+.|++++
T Consensus 285 Ls~N~l~~l-~~~~~~------l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 285 ISNNRLVAL-NLYGQP------IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CTTSCCCEE-ECSSSC------CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred CCCCCCCCC-Cccccc------CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeC
Confidence 999999874 333333 4599999999999997666688899999999999999865 3 67789999999999
Q ss_pred CcCeeeCCCCCcccccccccccCCCCCCCCC
Q 009835 403 NSFTGKIPLGTQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 403 N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~~ 433 (524)
|++.|.... ..+..+....+.+++..|+.+
T Consensus 355 N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 355 NDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 999987543 334555566678888888753
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-32 Score=268.26 Aligned_cols=303 Identities=20% Similarity=0.299 Sum_probs=253.2
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
..+++.|+++++ .+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+... +.+.
T Consensus 43 l~~L~~L~l~~~--------~i~-~~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~--~~~~ 107 (347)
T 4fmz_A 43 LESITKLVVAGE--------KVA-SIQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI--SALQ 107 (347)
T ss_dssp HTTCSEEECCSS--------CCC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccccEEEEeCC--------ccc-cch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--hHHc
Confidence 357889999986 443 233 48889999999999999987 444 99999999999999988764 4699
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
++++|++|++++|.+...+. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +...
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~----~~~l- 176 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDL---SPLSNMTGLNYLTVTESKVKDVTP----IANL- 176 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCC---GGGTTCTTCCEEECCSSCCCCCGG----GGGC-
T ss_pred CCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccc---cchhhCCCCcEEEecCCCcCCchh----hccC-
Confidence 99999999999999986654 889999999999999655543 358999999999999999877644 3344
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+.+ +++ +.. .++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 177 ~~L~~L~l~~n~l~~--~~~-~~~-l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 248 (347)
T 4fmz_A 177 TDLYSLSLNYNQIED--ISP-LAS-LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248 (347)
T ss_dssp TTCSEEECTTSCCCC--CGG-GGG-CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCEEEccCCcccc--ccc-ccC-CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE
Confidence 999999999999944 333 444 4599999999999986544 8889999999999999996544 8899999999
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
++++|.+++. ..+.. +++|++|++++|.+++. +.+..+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus 249 ~l~~n~l~~~--~~~~~------l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 249 EIGTNQISDI--NAVKD------LTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp ECCSSCCCCC--GGGTT------CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred ECCCCccCCC--hhHhc------CCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 9999999875 33444 44999999999999975 568899999999999999999999999999999999999
Q ss_pred CCcCeeeCCCCCcccccccccccCCCC
Q 009835 402 RNSFTGKIPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 402 ~N~l~~~~p~~~~~~~~~~~~~~gn~~ 428 (524)
+|++++..| ...+..+....+.+|+.
T Consensus 320 ~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 320 QNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CCccccccC-hhhhhccceeehhhhcc
Confidence 999998777 55677788888888874
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=287.01 Aligned_cols=311 Identities=23% Similarity=0.236 Sum_probs=241.8
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
+.++++++ .+++ +|..+. ++|++|++++|.+++. .|..|.++++|++|+|++|.+.+..|..|.++++
T Consensus 34 ~~l~ls~~--------~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNR--------NLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTS--------CCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCCC--------CCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 77899885 6664 776664 8999999999999986 6789999999999999999999999999999999
Q ss_pred CcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc-
Q 009835 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI- 244 (524)
Q Consensus 166 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L- 244 (524)
|++|++++|.++.++.. .+++|++|++++|.++..+. +..++++++|++|++++|.+.+... ... ++|
T Consensus 102 L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L~~n~l~~~~~-----~~l-~~L~ 170 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC----PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKFRQLDL-----LPV-AHLH 170 (562)
T ss_dssp CCEEECTTSCCCEECSC----CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEEECSBCCTTTT-----GGG-TTSC
T ss_pred CCEEECCCCcCCccCcc----ccccCCEEECCCCCccccCc-hHhhcccCcccEEecCCCccccCch-----hhh-hhce
Confidence 99999999999976642 89999999999999988642 4689999999999999999876322 222 555
Q ss_pred -cEEEccCCCC--CCCCCCchhhhc-------------------------------------------------------
Q 009835 245 -ETLDLSDNNL--PSSSVYPWLFNL------------------------------------------------------- 266 (524)
Q Consensus 245 -~~L~L~~n~l--~~~~~~~~~~~~------------------------------------------------------- 266 (524)
++|++++|.+ ++ ..+..+...
T Consensus 171 L~~L~L~~n~l~~~~-~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 171 LSCILLDLVSYHIKG-GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp EEEEEEEESSCCCCS-SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeEEEeecccccccc-cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 9999999988 43 222222110
Q ss_pred -------------------------cccccEEEeeccccccccchhh---------------------------------
Q 009835 267 -------------------------SRNIQYLNLGFNSLQGSIPEAF--------------------------------- 288 (524)
Q Consensus 267 -------------------------~~~L~~L~Ls~n~l~~~~~~~~--------------------------------- 288 (524)
.++|++|++++|.+++.+|..+
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 0167788888888876666543
Q ss_pred --------------------hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCc--hhHHHHhccCCCCCC
Q 009835 289 --------------------QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD--LSEMIQNLSGGCTMN 346 (524)
Q Consensus 289 --------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~~~~~~ 346 (524)
..+++|++|++++|.+++..|..+..+++|++|++++|++++. .|..+..++
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~------ 403 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS------ 403 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT------
T ss_pred cCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC------
Confidence 4567888888888888877888888888888888888888863 344555544
Q ss_pred CccEEEcCCCCCccCCC-C-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC-CCcccccccccc
Q 009835 347 SLEGVCLEGNDITGPLP-D-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL-GTQLQSFNASVY 423 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~ 423 (524)
+|++|++++|++++.+| . +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|. ...+..+....+
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 88888888888887444 3 77888888888888888876666543 68888888888888 5554 334566777777
Q ss_pred cCCCCC
Q 009835 424 AGNPEL 429 (524)
Q Consensus 424 ~gn~~~ 429 (524)
.+|...
T Consensus 481 ~~N~l~ 486 (562)
T 3a79_B 481 ASNQLK 486 (562)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 777653
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=291.58 Aligned_cols=316 Identities=22% Similarity=0.278 Sum_probs=215.7
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCc-cCCccc
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLL-KVPRPF 160 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~~ 160 (524)
..+++.|+|+++ .+++..|..|..+++|++|++++|.+++. .|..++++++|++|++++|.+.+ ..|..+
T Consensus 49 l~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSS--------RINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCC--------CcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 357899999985 78888888999999999999999999986 66779999999999999999886 467788
Q ss_pred cCCCCCcEEEccCCCC-CCCCCchhcCCCCCCcEEEccCCCCCCCC-Cc--------------------hH-hhhcccCC
Q 009835 161 QYLSGLVYLHLENSNL-FSLGSLQWLSHLSSLRHLDLSYINLTKSS-DW--------------------FQ-VVAKLRSL 217 (524)
Q Consensus 161 ~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~--------------------~~-~l~~l~~L 217 (524)
+++++|++|++++|.+ ..++ ...+.++++|++|++++|.+++.. .. +. .+..+++|
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 198 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTB
T ss_pred hccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccc
Confidence 9999999999999984 4332 245788888888988888877531 10 11 12457899
Q ss_pred CEEEeeCCCCCCCCCCchh-------------------------------------------------------------
Q 009835 218 KTLVLHSCALPPINPSSIW------------------------------------------------------------- 236 (524)
Q Consensus 218 ~~L~L~~n~l~~~~~~~~~------------------------------------------------------------- 236 (524)
++|++++|.+.+.......
T Consensus 199 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 278 (549)
T 2z81_A 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278 (549)
T ss_dssp SEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC
T ss_pred cEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhh
Confidence 9999999988764200000
Q ss_pred --------------------------hhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccc-----
Q 009835 237 --------------------------HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP----- 285 (524)
Q Consensus 237 --------------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----- 285 (524)
......+|++|++++|.+ ..+|..++...++|++|++++|.+++.+|
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l--~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC--CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred hhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc--ccCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 001113444555555554 23444444333355555555555554332
Q ss_pred ------------------------hhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC
Q 009835 286 ------------------------EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341 (524)
Q Consensus 286 ------------------------~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 341 (524)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++........+..
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~ 435 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSE
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceE
Confidence 23444555555555555555 34445555555555555555554322111011100
Q ss_pred -----------CCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 342 -----------GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 342 -----------~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
...+++|++|++++|+++ .+|....+++|++|+|++|++++..|..+..+++|+.|++++|+++|.+|
T Consensus 436 L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 436 LDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 024678999999999998 45556778999999999999999888899999999999999999999988
Q ss_pred C
Q 009835 411 L 411 (524)
Q Consensus 411 ~ 411 (524)
.
T Consensus 515 ~ 515 (549)
T 2z81_A 515 R 515 (549)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=274.17 Aligned_cols=273 Identities=17% Similarity=0.212 Sum_probs=184.2
Q ss_pred CCCCHHHHHHHHHHHhcCC-CCCCCCCCCCCC-CCCCCCCcccceEeC--------CCCCcEEEEEcCCCCCCCCCCCcc
Q 009835 34 MRCIDEEREALLTFKQSLV-DEYGVLSSWGKD-NDKRDCCKWRGVRCS--------NKTGHVKVLNLRRSDDENSRGTVL 103 (524)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~W~~~-~~~~~~c~w~gv~c~--------~~~~~v~~L~L~~~~~~~~~~~~l 103 (524)
..+..+|+.||++||+.+. ++.++..+|... ....++|.|.|+.|. ....+|+.|+|+++ .+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n--------~l 93 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV--------PL 93 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS--------CC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC--------Cc
Confidence 4467789999999999884 776777888310 146789999999994 23468899999885 56
Q ss_pred eeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCch
Q 009835 104 KGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQ 183 (524)
Q Consensus 104 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 183 (524)
+ .+|+.++++++|++|+|++|.++ . +|..++.+++|++|+|++|.+. .+|..+.++++|++|++++|++..... .
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p-~ 168 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-E 168 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC-S
T ss_pred h-hcChhhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC-h
Confidence 5 78888888999999999999998 3 8888899999999999999888 778889999999999999876553222 2
Q ss_pred h---------cCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCC
Q 009835 184 W---------LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL 254 (524)
Q Consensus 184 ~---------~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l 254 (524)
. +.++++|++|++++|.++..+ ..+..+++|++|++++|.+.+..+ .+..+ ++|++|++++|.+
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l-~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQNLKSLKIRNSPLSALGP---AIHHL-PKLEELDLRGCTA 241 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCTTCCEEEEESSCCCCCCG---GGGGC-TTCCEEECTTCTT
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCCCCCEEEccCCCCCcCch---hhccC-CCCCEEECcCCcc
Confidence 2 233666666666666666443 346666666666666666665333 23333 5666666666555
Q ss_pred CCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCC
Q 009835 255 PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
.+ .++..+.... +|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.+++..+.+
T Consensus 242 ~~-~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 242 LR-NYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CC-BCCCCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hh-hhHHHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 44 4444433333 555555555555555555555555555555555555555555555555555555555443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=275.16 Aligned_cols=304 Identities=25% Similarity=0.325 Sum_probs=226.4
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+++.. + +..+++|++|++++|.+.+. +. +.++++|++|++++|.+.+..+ +.+
T Consensus 68 ~~L~~L~Ls~n--------~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~--~~~ 132 (466)
T 1o6v_A 68 NNLTQINFSNN--------QLTDIT-P-LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITDIDP--LKN 132 (466)
T ss_dssp TTCCEEECCSS--------CCCCCG-G-GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred cCCCEEECCCC--------ccCCch-h-hhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCCCCCChH--HcC
Confidence 56888888885 555433 3 88888888888888888774 33 8888888888888888776533 788
Q ss_pred CCCCcEEEccCCCCCCCCCc------------------hhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeC
Q 009835 163 LSGLVYLHLENSNLFSLGSL------------------QWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
+++|++|++++|.+...+.. ..+.++++|++|++++|.+...+ .+..+++|++|++++
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATN 208 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh----hhccCCCCCEEEecC
Confidence 88888888888877654321 12556677777777777766553 467777888888888
Q ss_pred CCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCccc
Q 009835 225 CALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNEL 304 (524)
Q Consensus 225 n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 304 (524)
|.+.+..+ +.. +++|++|++++|.+.+ + +.+... ++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 209 n~l~~~~~----~~~-l~~L~~L~l~~n~l~~--~-~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 209 NQISDITP----LGI-LTNLDELSLNGNQLKD--I-GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277 (466)
T ss_dssp SCCCCCGG----GGG-CTTCCEEECCSSCCCC--C-GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred Cccccccc----ccc-cCCCCEEECCCCCccc--c-hhhhcC-CCCCEEECCCCccccchh--hhcCCCCCEEECCCCcc
Confidence 87776544 223 3788888888888743 2 334444 488888888888876544 77788888888888888
Q ss_pred ccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccc
Q 009835 305 EGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 305 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 384 (524)
++..+ +..+++|++|++++|.+++..+ +..+ ++|+.|++++|++++..+ +..+++|+.|++++|.+++.
T Consensus 278 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l------~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNL------KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC------TTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred Ccccc--ccCCCccCeEEcCCCcccCchh--hcCC------CCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc
Confidence 85444 7788888888888888887655 4444 489999999999887766 77889999999999998865
Q ss_pred cchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCCCC
Q 009835 385 IDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELC 430 (524)
Q Consensus 385 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~~C 430 (524)
..+..+++|+.|++++|++++..| ...+..+....+.+|++..
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred --hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 468889999999999999998877 4566777777788887654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=301.53 Aligned_cols=288 Identities=25% Similarity=0.232 Sum_probs=124.0
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
++|++|++++|.+.+. .+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+..... ..+..+++|++|
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS-CSCSSCTTCCEE
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH-HHhcCCCCCCEE
Confidence 3445555555544443 34444445555555555554444444444445555555555554443322 334444455555
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.+...+ ...+..+++|++|++++|.+.+... +++|+.|++++|++. .++.. ..+++.|+
T Consensus 344 ~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~~L~l~~N~l~--~l~~~----~~~l~~L~ 407 (844)
T 3j0a_A 344 DLQKNHIAIIQ--DQTFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKLV--TLPKI----NLTANLIH 407 (844)
T ss_dssp ECCSCCCCCCC--SSCSCSCCCCCEEEEETCCSCCCSS--------CCSCSEEEEESCCCC--CCCCC----CTTCCEEE
T ss_pred ECCCCCCCccC--hhhhcCCCCCCEEECCCCCCCcccC--------CCCcchhccCCCCcc--ccccc----ccccceee
Confidence 55555444443 1234444455555555544443221 144444455444442 22221 12444444
Q ss_pred eeccccccc-cchhhhcccccceEeecCcccccccch-hhcCCCCCCEEEccCCCCCCch-----hHHHHhccCCCCCCC
Q 009835 275 LGFNSLQGS-IPEAFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGDL-----SEMIQNLSGGCTMNS 347 (524)
Q Consensus 275 Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~~~~~~~ 347 (524)
+++|++++. .+..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++... +..|..+ ++
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l------~~ 481 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL------SH 481 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB------CC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc------cc
Confidence 444444432 111223444444444444444432221 2233444444444444443211 1122222 24
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCC
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGN 426 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn 426 (524)
|+.|+|++|.+++.++. +.++++|+.|+|++|++++..+..+. ++|+.|++++|++++..|.. +..+....+.+|
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N 557 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN 557 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCC
Confidence 44444444444444443 44444444444444444433333332 44444444444444444432 223334444444
Q ss_pred CCCC
Q 009835 427 PELC 430 (524)
Q Consensus 427 ~~~C 430 (524)
|+.|
T Consensus 558 p~~C 561 (844)
T 3j0a_A 558 KFIC 561 (844)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 4444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-31 Score=260.40 Aligned_cols=275 Identities=19% Similarity=0.154 Sum_probs=227.6
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..+. ++|++|++++|.+++. .+..+.++++|++|+|++|.+.+..|..|.++++|++|++++|.+..++.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~---- 117 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---- 117 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS----
T ss_pred ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh----
Confidence 3454443 6899999999999985 56689999999999999999999989999999999999999999986654
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCC--CCCCchhhhcccCcccEEEccCCCCCCCCCCchh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP--INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWL 263 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 263 (524)
.-.++|++|++++|.++..+ ...+..+++|++|++++|.+.. ..+. .+..+ ++|++|++++|.+. .++..+
T Consensus 118 ~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l-~~L~~L~l~~n~l~--~l~~~~ 190 (330)
T 1xku_A 118 KMPKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENG--AFQGM-KKLSYIRIADTNIT--TIPQGL 190 (330)
T ss_dssp SCCTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBCTT--GGGGC-TTCCEEECCSSCCC--SCCSSC
T ss_pred hhcccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccCcChh--hccCC-CCcCEEECCCCccc--cCCccc
Confidence 12379999999999998876 4678999999999999999864 3342 44444 99999999999994 455544
Q ss_pred hhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCC
Q 009835 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC 343 (524)
Q Consensus 264 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 343 (524)
. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..++
T Consensus 191 ~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~--- 263 (330)
T 1xku_A 191 P---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK--- 263 (330)
T ss_dssp C---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS---
T ss_pred c---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC---
Confidence 3 58999999999999888889999999999999999999888888999999999999999998 4555565544
Q ss_pred CCCCccEEEcCCCCCccCCCC-CC------CCCCCcEEEccCCcCcc--ccchhhhcCCCCCEEECcCCc
Q 009835 344 TMNSLEGVCLEGNDITGPLPD-LG------GFSSLKILVLGENRLNG--TIDKSLSQLLKLESLSLGRNS 404 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~-~~------~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~ 404 (524)
+|++|++++|++++..+. +. ..+.|+.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 264 ---~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 264 ---YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ---SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ---CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 899999999999987665 43 24789999999998864 567788899999999999985
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=262.51 Aligned_cols=274 Identities=21% Similarity=0.176 Sum_probs=229.0
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..+. ++|++|++++|.+++. .|..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+..++.. +
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~ 121 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN--L 121 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS--C
T ss_pred ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc--c
Confidence 4565553 6899999999999885 677899999999999999999998899999999999999999999866641 2
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCC--CCCCchhhhcccCcccEEEccCCCCCCCCCCchh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP--INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWL 263 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 263 (524)
. ++|++|++++|.++..+ ...+..+++|++|++++|.+.. ..+ ..+..+ +|++|++++|.+. .++..+
T Consensus 122 ~--~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l-~L~~L~l~~n~l~--~l~~~~ 191 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEP---GAFDGL-KLNYLRISEAKLT--GIPKDL 191 (332)
T ss_dssp C--TTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCT---TSSCSC-CCSCCBCCSSBCS--SCCSSS
T ss_pred c--ccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCc---ccccCC-ccCEEECcCCCCC--ccCccc
Confidence 2 89999999999999876 3568999999999999999863 334 233342 8999999999994 455544
Q ss_pred hhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCC
Q 009835 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC 343 (524)
Q Consensus 264 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 343 (524)
. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..++
T Consensus 192 ~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~--- 264 (332)
T 2ft3_A 192 P---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK--- 264 (332)
T ss_dssp C---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT---
T ss_pred c---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc---
Confidence 3 58999999999999888888999999999999999999888888999999999999999998 5566676655
Q ss_pred CCCCccEEEcCCCCCccCCCC-CCC------CCCCcEEEccCCcCc--cccchhhhcCCCCCEEECcCCc
Q 009835 344 TMNSLEGVCLEGNDITGPLPD-LGG------FSSLKILVLGENRLN--GTIDKSLSQLLKLESLSLGRNS 404 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~-~~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~l~~N~ 404 (524)
+|++|++++|++++..+. +.. .++|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 265 ---~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 ---LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ---cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999987665 433 467999999999987 6778889999999999999985
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=255.68 Aligned_cols=281 Identities=23% Similarity=0.325 Sum_probs=235.0
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
..+++.|+++++ .+++ ++. +..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +.
T Consensus 65 ~~~L~~L~l~~n--------~i~~-~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~--~~ 129 (347)
T 4fmz_A 65 LTNLEYLNLNGN--------QITD-ISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISP--LA 129 (347)
T ss_dssp CTTCCEEECCSS--------CCCC-CGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGG--GT
T ss_pred cCCccEEEccCC--------cccc-chh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchh--hc
Confidence 357999999995 5554 333 9999999999999999987 44 68999999999999999886543 89
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
.+++|++|++++|...... ..+..+++|++|++++|.+.... .+..+++|++|++++|.+.+..+ +...
T Consensus 130 ~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~l- 198 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQIEDISP----LASL- 198 (347)
T ss_dssp TCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECTTSCCCCCGG----GGGC-
T ss_pred cCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCch----hhccCCCCCEEEccCCccccccc----ccCC-
Confidence 9999999999999655332 44899999999999999988774 38899999999999999887543 3344
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|+.|++++|.+.+ .++ +. ..++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 199 ~~L~~L~l~~n~l~~--~~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 270 (347)
T 4fmz_A 199 TSLHYFTAYVNQITD--ITP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270 (347)
T ss_dssp TTCCEEECCSSCCCC--CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CccceeecccCCCCC--Cch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence 999999999999954 333 44 44599999999999986544 88999999999999999854 468899999999
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
++++|.+++. ..+..++ +|++|++++|.+++..+. +..+++|++|++++|.+++..| +..+++|++|++
T Consensus 271 ~l~~n~l~~~--~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 271 NVGSNQISDI--SVLNNLS------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp ECCSSCCCCC--GGGGGCT------TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred EccCCccCCC--hhhcCCC------CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 9999999876 3455544 999999999999988776 8899999999999999997766 889999999999
Q ss_pred cCCcCe
Q 009835 401 GRNSFT 406 (524)
Q Consensus 401 ~~N~l~ 406 (524)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 999986
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=264.99 Aligned_cols=303 Identities=23% Similarity=0.292 Sum_probs=218.5
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+. .+| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.+
T Consensus 46 ~~l~~L~l~~~--------~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~--~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRL--------GIK-SID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITP--LAN 110 (466)
T ss_dssp HTCCEEECCSS--------CCC-CCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred ccccEEecCCC--------CCc-cCc-chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccChh--hcC
Confidence 46888999885 443 244 488899999999999999984 44 9999999999999999987655 999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc-----------------hHhhhcccCCCEEEeeCC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW-----------------FQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------------~~~l~~l~~L~~L~L~~n 225 (524)
+++|++|++++|.+...+. +.++++|++|++++|.+...+.+ ...+..+++|++|++++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 9999999999999987653 89999999999999988775321 012455566666666666
Q ss_pred CCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
.+.+.. .+..+ ++|++|++++|.+.+ .++ +.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 188 ~l~~~~----~l~~l-~~L~~L~l~~n~l~~--~~~-~~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 188 KVSDIS----VLAKL-TNLESLIATNNQISD--ITP-LGI-LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCCCCG----GGGGC-TTCSEEECCSSCCCC--CGG-GGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cCCCCh----hhccC-CCCCEEEecCCcccc--ccc-ccc-cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 665431 22333 677777777777643 222 223 34777777777777643 34666777777777777777
Q ss_pred cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcccc
Q 009835 306 GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTI 385 (524)
Q Consensus 306 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 385 (524)
+..+ +..+++|++|++++|.+++..+ +..+ ++|+.|++++|++++..+ +..+++|+.|++++|++++..
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l------~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGL------TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC------TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCC------CccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCch
Confidence 5444 6677777777777777776544 4443 478888888888876544 677788888888888887665
Q ss_pred chhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCC
Q 009835 386 DKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 386 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~ 428 (524)
| +..+++|++|++++|++++. +....+..+....+.+|..
T Consensus 326 ~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 326 P--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred h--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCcc
Confidence 5 67788888888888888764 4444556666666777764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=281.04 Aligned_cols=314 Identities=22% Similarity=0.216 Sum_probs=245.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..+.+|.++++|++|+|++|++++. .+..|.++++|++|+|++|.+.+..+..|++
T Consensus 76 ~~L~~L~Ls~N--------~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 76 PELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred CCCCEEECCCC--------cCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 47889999885 78887788899999999999999999885 5678999999999999999999888888999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCC-ch---------------------------------
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD-WF--------------------------------- 208 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~--------------------------------- 208 (524)
+++|++|++++|.+.....+..+..+++|++|++++|.+++... ..
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 99999999999999877777788899999999999987754310 00
Q ss_pred --------------------------------------------------------------------------------
Q 009835 209 -------------------------------------------------------------------------------- 208 (524)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (524)
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence
Q ss_pred ---------------HhhhcccCCCEEEeeCCCCCCCCC-----------------------------------------
Q 009835 209 ---------------QVVAKLRSLKTLVLHSCALPPINP----------------------------------------- 232 (524)
Q Consensus 209 ---------------~~l~~l~~L~~L~L~~n~l~~~~~----------------------------------------- 232 (524)
..+.....|+.|++.+|.+.....
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 000111223444444332211100
Q ss_pred --Cchhhhcc----------------------cCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhh
Q 009835 233 --SSIWHFNL----------------------STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288 (524)
Q Consensus 233 --~~~~~~~~----------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 288 (524)
........ +++|+.+++..+.... ..+...+...++++.++++.|.+.+..+..+
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES-TTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc-ccccccccccccccccccccccccccccccc
Confidence 00011111 1344444554444433 2233334444589999999999998888899
Q ss_pred hcccccceEeecCcccc-cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CC
Q 009835 289 QLMVSLRFLYLTSNELE-GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LG 366 (524)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~ 366 (524)
..+++|+.|++++|.+. +..|..|..+++|++|+|++|++++..|..|..++ +|++|+|++|++++..+. +.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~------~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------SLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTTSCCCBCCCGGGT
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC------CCCEEECCCCcCCCCChhHHh
Confidence 99999999999999854 45788899999999999999999999999988876 999999999999998887 89
Q ss_pred CCCCCcEEEccCCcCccccchhhhcC-CCCCEEECcCCcCeeeCCCC
Q 009835 367 GFSSLKILVLGENRLNGTIDKSLSQL-LKLESLSLGRNSFTGKIPLG 412 (524)
Q Consensus 367 ~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~ 412 (524)
++++|++|+|++|++++..|..+.++ ++|++|++++|++.|.+...
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99999999999999999999999988 68999999999999988743
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=256.08 Aligned_cols=287 Identities=19% Similarity=0.244 Sum_probs=236.0
Q ss_pred CcccceEeCCC---------CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCC
Q 009835 71 CKWRGVRCSNK---------TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSR 141 (524)
Q Consensus 71 c~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~ 141 (524)
|.|..+.|... ..+++.|+++++ .+++..+..+.++++|++|++++|.+++. .|..+.++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN--------DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCC--------cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCC
Confidence 78999999632 247899999985 78887788999999999999999999986 7899999999
Q ss_pred CCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEE
Q 009835 142 LRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221 (524)
Q Consensus 142 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 221 (524)
|++|++++|.+. .+|..+. ++|++|++++|.+..++. ..+.++++|++|++++|.++.....+..+..+ +|++|+
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 999999999988 4555554 899999999999997664 56899999999999999997532224566777 999999
Q ss_pred eeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecC
Q 009835 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTS 301 (524)
Q Consensus 222 L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 301 (524)
+++|.+.+.... . .++|++|++++|.+.+ ..+..+... ++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 179 l~~n~l~~l~~~---~---~~~L~~L~l~~n~i~~-~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 179 ISEAKLTGIPKD---L---PETLNELHLDHNKIQA-IELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CCSSBCSSCCSS---S---CSSCSCCBCCSSCCCC-CCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CcCCCCCccCcc---c---cCCCCEEECCCCcCCc-cCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 999999885442 2 2799999999999955 333444444 4999999999999988888899999999999999
Q ss_pred cccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCc--cCCCC-CCCCCCCcEEEccC
Q 009835 302 NELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT--GPLPD-LGGFSSLKILVLGE 378 (524)
Q Consensus 302 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~--~~~~~-~~~l~~L~~L~Ls~ 378 (524)
|.++ .+|..+..+++|++|++++|.+++..+..|.........++|+.|++++|.+. +..+. +..+++|+.+++++
T Consensus 251 N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 9999 78888999999999999999999888877765432223458999999999987 45555 88999999999999
Q ss_pred Cc
Q 009835 379 NR 380 (524)
Q Consensus 379 N~ 380 (524)
|+
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 85
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=249.58 Aligned_cols=270 Identities=19% Similarity=0.226 Sum_probs=219.7
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEE
Q 009835 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLD 195 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 195 (524)
+++.++++++.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+..+.. ..+.++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEE
Confidence 57899999998886 666553 789999999999998888899999999999999999986543 6689999999999
Q ss_pred ccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEe
Q 009835 196 LSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275 (524)
Q Consensus 196 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 275 (524)
+++|.++..+. .+ .++|++|++++|.+.+..+ ..+..+++|++|++++|.+......+..+...++|++|++
T Consensus 107 Ls~n~l~~l~~---~~--~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 107 LSKNQLKELPE---KM--PKTLQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCSSCCSBCCS---SC--CTTCCEEECCSSCCCBBCH---HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCCcCCccCh---hh--cccccEEECCCCcccccCH---hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 99999987753 22 2789999999999987665 3333349999999999988432233334444559999999
Q ss_pred eccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCC
Q 009835 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEG 355 (524)
Q Consensus 276 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 355 (524)
++|.++. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..++ +|++|++++
T Consensus 179 ~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~ 249 (330)
T 1xku_A 179 ADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP------HLRELHLNN 249 (330)
T ss_dssp CSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST------TCCEEECCS
T ss_pred CCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC------CCCEEECCC
Confidence 9999884 555443 7899999999999988888899999999999999999888777777765 899999999
Q ss_pred CCCccCCCCCCCCCCCcEEEccCCcCccccchhhhc------CCCCCEEECcCCcCee
Q 009835 356 NDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQ------LLKLESLSLGRNSFTG 407 (524)
Q Consensus 356 n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~l~~N~l~~ 407 (524)
|+++..+..+..+++|++|++++|++++..+..|.. .+.++.|++++|++..
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 999966556888999999999999998776666643 3678899999998863
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=260.10 Aligned_cols=280 Identities=22% Similarity=0.198 Sum_probs=187.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+++ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+.+. + +++
T Consensus 42 ~~L~~L~Ls~n--------~l~~-~~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 42 ATLTSLDCHNS--------SITD-MT-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TTCCEEECCSS--------CCCC-CT-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred CCCCEEEccCC--------Cccc-Ch-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 46777888874 5554 34 57778888888888888877 33 77788888888888887764 3 777
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++ +..+++|++|++++|.+++.+ +..+++|++|++++|...+..+ +... +
T Consensus 105 l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~----~~~l-~ 170 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKKITKLD----VTPQ-T 170 (457)
T ss_dssp CTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTCSCCCCCC----CTTC-T
T ss_pred CCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCCCcccccc----cccC-C
Confidence 888888888888877643 677788888888888777652 5667777777777775433332 2233 6
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|++++ ++ +... ++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|++|+
T Consensus 171 ~L~~L~ls~n~l~~--l~--l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 171 QLTTLDCSFNKITE--LD--VSQN-KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp TCCEEECCSSCCCC--CC--CTTC-TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred cCCEEECCCCccce--ec--cccC-CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 77777777777744 22 2233 3677777777777653 25666777777777777765 44 56667777777
Q ss_pred ccCCCCCCchhHHHHhccC-----------------------CCCCCCccEEEcCCCCCccCCC---------CCCCCCC
Q 009835 323 LPYNKLSGDLSEMIQNLSG-----------------------GCTMNSLEGVCLEGNDITGPLP---------DLGGFSS 370 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~-----------------------~~~~~~L~~L~Ls~n~l~~~~~---------~~~~l~~ 370 (524)
+++|++++..+..+..+.. ...+++|+.|++++|...+.+| .+.++++
T Consensus 240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 7777776654433332210 0123567777777776554333 2566678
Q ss_pred CcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
|+.|++++|++++. + +.++++|+.|++++|++++
T Consensus 320 L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 320 LVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred CCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 88888888888763 3 7778888888888888876
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=250.26 Aligned_cols=287 Identities=22% Similarity=0.228 Sum_probs=184.7
Q ss_pred CCCCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEE
Q 009835 67 KRDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLN 146 (524)
Q Consensus 67 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~ 146 (524)
....|.|.++ |+ .+++ .++ .+|..+. ++|++|++++|.+++. .+..+.++++|++|+
T Consensus 26 ~~~~C~~~~~-c~----------~~~~--------~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 82 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSG--------SLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALV 82 (353)
T ss_dssp -CCEECTTSE-EE----------CCST--------TCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEE
T ss_pred cCCCCCCCeE-ee----------CCCC--------Ccc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEE
Confidence 4567888887 64 2332 333 4565554 4899999999999885 555899999999999
Q ss_pred ccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC
Q 009835 147 LSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226 (524)
Q Consensus 147 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 226 (524)
+++|.+.+..|..|.++++|++|++++|.++.++. ..+.++++|++|++++|.++..+. ...+..+++|++|++++|.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESS
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCc
Confidence 99999998888889999999999999999986553 557888999999999998887642 1356777788888887774
Q ss_pred -CCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 227 -LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 227 -l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
+....+. .+... ++|++|++++|.+.+ ..+..+.... +|++|++++|.++...+..+..+++|+.|++++|.++
T Consensus 161 ~~~~~~~~--~~~~l-~~L~~L~l~~n~l~~-~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 161 TFTKIQRK--DFAGL-TFLEELEIDASDLQS-YEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp SCCEECTT--TTTTC-CEEEEEEEEETTCCE-ECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred cccccCHH--HccCC-CCCCEEECCCCCcCc-cCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 4443332 22223 666666666666533 2233333332 5666666666654322223334556666666666555
Q ss_pred cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccC----CCC-CCCCCCCcEEEccCCc
Q 009835 306 GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGP----LPD-LGGFSSLKILVLGENR 380 (524)
Q Consensus 306 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~----~~~-~~~l~~L~~L~Ls~N~ 380 (524)
+..+..+. .. ...+.++.++++++.+++. +|. +..+++|+.|++++|+
T Consensus 236 ~~~~~~l~------------------------~~---~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 236 TFHFSELS------------------------TG---ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp TCCCC---------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred cccccccc------------------------cc---cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 43332221 11 0112444455555444431 122 5567778888888888
Q ss_pred Cccccchh-hhcCCCCCEEECcCCcCeeeCCC
Q 009835 381 LNGTIDKS-LSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 381 l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
++ .+|.. +.++++|++|++++|+++|.+|.
T Consensus 289 l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 77 44444 57788888888888888887763
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=255.06 Aligned_cols=263 Identities=19% Similarity=0.124 Sum_probs=209.7
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
..+..++++++|++|++++|.+++ +| .++.+++|++|++++|.+.+. | ++.+++|++|++++|.+.+++ +
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~----~ 102 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD----V 102 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC----C
T ss_pred ccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee----c
Confidence 344568889999999999999997 45 689999999999999999875 3 899999999999999999763 7
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
.++++|++|++++|.+++.+ +..+++|++|++++|.+++.. +..+ ++|++|++++|...+ .+ .+..
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~-----l~~l-~~L~~L~l~~n~~~~-~~--~~~~ 168 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID-----VSHN-TQLTELDCHLNKKIT-KL--DVTP 168 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC-----CTTC-TTCCEEECTTCSCCC-CC--CCTT
T ss_pred CCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec-----cccC-CcCCEEECCCCCccc-cc--cccc
Confidence 89999999999999998863 789999999999999998852 3344 999999999996544 43 2334
Q ss_pred ccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCC
Q 009835 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 345 (524)
. ++|++|++++|++++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|++++. | +.. +
T Consensus 169 l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~------l 232 (457)
T 3bz5_A 169 Q-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTP------L 232 (457)
T ss_dssp C-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTT------C
T ss_pred C-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccc------c
Confidence 4 499999999999996 45 78899999999999999965 388999999999999999984 3 444 4
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCC-------CCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFS-------SLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
++|+.|++++|++++.++. +.+++ +|+.|++++|.+.+.+| ++.+++|+.|++++|++.+.+|
T Consensus 233 ~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 4899999999999886543 43333 44555555555555554 3455666666666666655555
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=252.57 Aligned_cols=279 Identities=22% Similarity=0.220 Sum_probs=206.9
Q ss_pred cCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCC
Q 009835 112 LKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSL 191 (524)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 191 (524)
..++.....+.+++.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+..+.. ..+.++++|
T Consensus 28 ~~C~~~~~c~~~~~~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 102 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSL 102 (353)
T ss_dssp CEECTTSEEECCSTTCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTC
T ss_pred CCCCCCeEeeCCCCCccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-hhcCCCCCC
Confidence 345555668889999887 676554 589999999999988777789999999999999998885543 457778888
Q ss_pred cEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcccccc
Q 009835 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQ 271 (524)
Q Consensus 192 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 271 (524)
++|++++|.++..+ ...+..+++|++|++++|.+...... ..+...++|+
T Consensus 103 ~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~----------------------------~~~~~l~~L~ 152 (353)
T 2z80_A 103 EHLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGET----------------------------SLFSHLTKLQ 152 (353)
T ss_dssp CEEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSS----------------------------CSCTTCTTCC
T ss_pred CEEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCch----------------------------hhhccCCCCc
Confidence 88888888877664 23456666666666666655433220 1122223677
Q ss_pred EEEeecc-ccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccE
Q 009835 272 YLNLGFN-SLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350 (524)
Q Consensus 272 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~ 350 (524)
+|++++| .+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++......+..++ +|+.
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~------~L~~ 226 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS------SVEC 226 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT------TEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc------cccE
Confidence 7777776 35545566777788888888888888877788888888888888888888655554455544 8889
Q ss_pred EEcCCCCCccCCCC----CCCCCCCcEEEccCCcCcc----ccchhhhcCCCCCEEECcCCcCeeeCCCC--Cccccccc
Q 009835 351 VCLEGNDITGPLPD----LGGFSSLKILVLGENRLNG----TIDKSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNA 420 (524)
Q Consensus 351 L~Ls~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~ 420 (524)
|++++|.+++..+. ....+.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+..
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence 99999888876543 3456789999999999886 37888999999999999999999 66654 45778888
Q ss_pred ccccCCCCCCCC
Q 009835 421 SVYAGNPELCGL 432 (524)
Q Consensus 421 ~~~~gn~~~C~~ 432 (524)
..+.+|++.|+.
T Consensus 306 L~L~~N~~~~~~ 317 (353)
T 2z80_A 306 IWLHTNPWDCSC 317 (353)
T ss_dssp EECCSSCBCCCH
T ss_pred EEeeCCCccCcC
Confidence 899999999964
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=260.68 Aligned_cols=286 Identities=24% Similarity=0.242 Sum_probs=232.2
Q ss_pred CCCCCCCCCCCCCCCcccceEeC------CCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCC
Q 009835 57 VLSSWGKDNDKRDCCKWRGVRCS------NKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGS 130 (524)
Q Consensus 57 ~~~~W~~~~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 130 (524)
....|. .+.++|.|.|..|. .....++.|+++++ .++ .+|..+. ++|++|++++|.++.
T Consensus 11 ~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n--------~L~-~lp~~l~--~~L~~L~L~~N~l~~- 75 (622)
T 3g06_A 11 VWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLTS- 75 (622)
T ss_dssp HHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS--------CCS-CCCSCCC--TTCSEEEECSCCCSC-
T ss_pred HHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecCC--------CcC-ccChhhC--CCCcEEEecCCCCCC-
Confidence 345676 46788999664221 11235889999995 565 6777665 899999999999986
Q ss_pred CCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHh
Q 009835 131 PLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQV 210 (524)
Q Consensus 131 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 210 (524)
+|. .+++|++|+|++|.+++ +|. .+++|++|++++|.+..++. .+++|++|++++|.++..+.
T Consensus 76 -lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~---- 138 (622)
T 3g06_A 76 -LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV---- 138 (622)
T ss_dssp -CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC----
T ss_pred -CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC----
Confidence 666 57999999999999875 554 78999999999999997654 67899999999999998764
Q ss_pred hhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhc
Q 009835 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290 (524)
Q Consensus 211 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 290 (524)
.+++|++|++++|.+.+... .+.+|+.|++++|.++ .++ ..+++|+.|++++|.+++ +|. .
T Consensus 139 --~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~--~l~----~~~~~L~~L~Ls~N~l~~-l~~---~ 199 (622)
T 3g06_A 139 --LPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLT--SLP----MLPSGLQELSVSDNQLAS-LPT---L 199 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCS--CCC----CCCTTCCEEECCSSCCSC-CCC---C
T ss_pred --CCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCCCC--CCc----ccCCCCcEEECCCCCCCC-CCC---c
Confidence 24899999999999987543 2388999999999994 444 334599999999999985 443 3
Q ss_pred ccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCC
Q 009835 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSS 370 (524)
Q Consensus 291 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~ 370 (524)
+++|+.|++++|.++ .+|. .+++|++|++++|.+++.. . .+++|+.|++++|+++..++ .+++
T Consensus 200 ~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp----~------~l~~L~~L~Ls~N~L~~lp~---~~~~ 262 (622)
T 3g06_A 200 PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP----V------LPSELKELMVSGNRLTSLPM---LPSG 262 (622)
T ss_dssp CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC----C------CCTTCCEEECCSSCCSCCCC---CCTT
T ss_pred cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC----C------CCCcCcEEECCCCCCCcCCc---cccc
Confidence 578999999999998 4554 3579999999999998743 1 23589999999999996544 6789
Q ss_pred CcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
|+.|+|++|+++ .+|..+.++++|+.|++++|++++.+|.
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 999999999999 7799999999999999999999987774
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=243.15 Aligned_cols=253 Identities=21% Similarity=0.226 Sum_probs=170.9
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-chhcCCCCCCcEEEc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGS-LQWLSHLSSLRHLDL 196 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L 196 (524)
+.++.+++.++. +|..+. ++|++|++++|.+....+..|.++++|++|++++|.+...+. +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 568888888776 565443 678888888888775555557788888888888877764321 133445666777777
Q ss_pred cCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEee
Q 009835 197 SYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLG 276 (524)
Q Consensus 197 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 276 (524)
++|.+...+ ..+..+++|++|++++|.+.+..+. ..+.. .++|++|+++
T Consensus 86 s~n~i~~l~---~~~~~l~~L~~L~l~~n~l~~~~~~---------------------------~~~~~-l~~L~~L~l~ 134 (306)
T 2z66_A 86 SFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEF---------------------------SVFLS-LRNLIYLDIS 134 (306)
T ss_dssp CSCSEEEEE---EEEETCTTCCEEECTTSEEESSTTT---------------------------TTTTT-CTTCCEEECT
T ss_pred CCCccccCh---hhcCCCCCCCEEECCCCcccccccc---------------------------hhhhh-ccCCCEEECC
Confidence 666655432 2344444555555544444332220 12222 2367777777
Q ss_pred ccccccccchhhhcccccceEeecCccccc-ccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCC
Q 009835 277 FNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEG 355 (524)
Q Consensus 277 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 355 (524)
+|.+++..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..+..++ +|++|++++
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~ 208 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------SLQVLNMSH 208 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTT
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC------CCCEEECCC
Confidence 777666666667777777777777777765 4666777777788888888877776666666554 788888888
Q ss_pred CCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCC-CCCEEECcCCcCeeeCCC
Q 009835 356 NDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL-KLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 356 n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~ 411 (524)
|.+++..+. +..+++|+.|++++|++++..|..+..++ +|++|++++|++++.++.
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 888776664 77788888888888888888888888774 888888888888876653
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=243.76 Aligned_cols=249 Identities=25% Similarity=0.259 Sum_probs=112.2
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
++|++|++++|.+++ +| .++++++|++|++++|.+.+ +|..+ .+|++|++++|.+..++ .+.++++|++|
T Consensus 131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~---~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP---ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC---CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc---cccCCCCCCEE
Confidence 456666666666654 44 35666666666666665554 33322 35666666666555433 25555566666
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.+++.+.. .++|++|++++|.+... |. +... ++|++|++++|++.+ ++.. .++|++|+
T Consensus 201 ~l~~N~l~~l~~~------~~~L~~L~l~~n~l~~l-p~---~~~l-~~L~~L~l~~N~l~~--l~~~----~~~L~~L~ 263 (454)
T 1jl5_A 201 YADNNSLKKLPDL------PLSLESIVAGNNILEEL-PE---LQNL-PFLTTIYADNNLLKT--LPDL----PPSLEALN 263 (454)
T ss_dssp ECCSSCCSSCCCC------CTTCCEEECCSSCCSSC-CC---CTTC-TTCCEEECCSSCCSS--CCSC----CTTCCEEE
T ss_pred ECCCCcCCcCCCC------cCcccEEECcCCcCCcc-cc---cCCC-CCCCEEECCCCcCCc--cccc----ccccCEEE
Confidence 6666555554321 13555555555555422 21 2222 555555555555522 2221 13455555
Q ss_pred eeccccccccchhhhcccccceEeecCcccccc--cch-------------hhcCC-CCCCEEEccCCCCCCchhHHHHh
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG--IPK-------------FFGKM-CSLNRLCLPYNKLSGDLSEMIQN 338 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~-------------~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 338 (524)
+++|.+++ +|.. +++|+.|++++|.+++. .|. .+..+ ++|++|++++|++++. |..
T Consensus 264 l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p~~--- 335 (454)
T 1jl5_A 264 VRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PAL--- 335 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CCC---
T ss_pred CCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc-ccc---
Confidence 55555543 2221 24455555555554431 110 01112 3555555555555432 111
Q ss_pred ccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcc--ccchhhhcC-------------CCCCEEECcCC
Q 009835 339 LSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNG--TIDKSLSQL-------------LKLESLSLGRN 403 (524)
Q Consensus 339 l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------------~~L~~L~l~~N 403 (524)
+++|++|++++|++++.+. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|
T Consensus 336 ------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 336 ------PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp ------CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred ------CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 1255556666555553222 34556666666666555 455555544 55555666666
Q ss_pred cCee
Q 009835 404 SFTG 407 (524)
Q Consensus 404 ~l~~ 407 (524)
++++
T Consensus 407 ~l~~ 410 (454)
T 1jl5_A 407 PLRE 410 (454)
T ss_dssp ----
T ss_pred cCCc
Confidence 5554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=239.35 Aligned_cols=276 Identities=23% Similarity=0.247 Sum_probs=204.6
Q ss_pred EEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCcc--CCccccCCC
Q 009835 87 VLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK--VPRPFQYLS 164 (524)
Q Consensus 87 ~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~--~p~~~~~l~ 164 (524)
.++.++. .++ .+|..+. ++|++|++++|.++.. .+..+.++++|++|+|++|.+... .|..+..++
T Consensus 11 ~l~c~~~--------~l~-~ip~~~~--~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 11 EIRCNSK--------GLT-SVPTGIP--SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp EEECCSS--------CCS-SCCSCCC--TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred EEEcCCC--------Ccc-cCCCCCC--CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence 5777774 343 4555443 6899999999999974 445689999999999999998743 367788899
Q ss_pred CCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc
Q 009835 165 GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244 (524)
Q Consensus 165 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 244 (524)
+|++|++++|.+..++ ..+..+++|++|++++|.++..+. ...+..+++|++|++++|.+.+..+.
T Consensus 79 ~L~~L~Ls~n~i~~l~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 144 (306)
T 2z66_A 79 SLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNG----------- 144 (306)
T ss_dssp CCCEEECCSCSEEEEE--EEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTT-----------
T ss_pred ccCEEECCCCccccCh--hhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchh-----------
Confidence 9999999999988544 458899999999999999987753 24566777777777777765544332
Q ss_pred cEEEccCCCCCCCCCCchhhhccccccEEEeecccccc-ccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEc
Q 009835 245 ETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG-SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323 (524)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 323 (524)
.+ ...++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 145 -----------------~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 145 -----------------IF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp -----------------TT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -----------------hc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 11 112366667776666665 46667777888888888888888777778888888888888
Q ss_pred cCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCC-CCcEEEccCCcCccccc--hhhhcCCCCCEEE
Q 009835 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFS-SLKILVLGENRLNGTID--KSLSQLLKLESLS 399 (524)
Q Consensus 324 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~ 399 (524)
++|.+++..+..+..++ +|++|++++|.+++..+. +..++ +|++|++++|.+++..+ ....-+...+.+.
T Consensus 207 ~~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~ 280 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLN------SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280 (306)
T ss_dssp TTSCCSBCCSGGGTTCT------TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB
T ss_pred CCCccCccChhhccCcc------cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh
Confidence 88888877666666554 888999999988887776 77774 89999999999986532 1122233445566
Q ss_pred CcCCcCeeeCCCC
Q 009835 400 LGRNSFTGKIPLG 412 (524)
Q Consensus 400 l~~N~l~~~~p~~ 412 (524)
+..+.+.+..|..
T Consensus 281 ~~~~~~~C~~p~~ 293 (306)
T 2z66_A 281 VEVERMECATPSD 293 (306)
T ss_dssp SCGGGCBEEESGG
T ss_pred ccccccccCCchh
Confidence 6777888877754
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=242.18 Aligned_cols=239 Identities=21% Similarity=0.225 Sum_probs=142.4
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..+. +++++|+|++|.+++. .+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+..++. ..+
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 143 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS-GAF 143 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT-TTS
T ss_pred ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh-hhh
Confidence 3554443 5788888888888775 56777788888888888887777777777777777777777777664443 334
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
.++++|++|++++|.+... .+ ..+..+++|++|++++|...+ .++...
T Consensus 144 ~~l~~L~~L~L~~N~l~~~--------------------------~~---~~~~~l~~L~~L~l~~~~~l~-~i~~~~-- 191 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESI--------------------------PS---YAFNRVPSLMRLDLGELKKLE-YISEGA-- 191 (452)
T ss_dssp SSCTTCCEEECCSCCCCEE--------------------------CT---TTTTTCTTCCEEECCCCTTCC-EECTTT--
T ss_pred cccCCCCEEECCCCCccee--------------------------CH---hHHhcCCcccEEeCCCCCCcc-ccChhh--
Confidence 4555555555555544332 22 112222666666666643322 333332
Q ss_pred ccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCC
Q 009835 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 345 (524)
+..+++|++|++++|.+++ +| .+..+++|++|+|++|.+++..+..|..++
T Consensus 192 ----------------------~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 242 (452)
T 3zyi_A 192 ----------------------FEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS----- 242 (452)
T ss_dssp ----------------------TTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----
T ss_pred ----------------------ccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCcc-----
Confidence 3344444445555544442 22 244555555555555555555555555443
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+|+.|++++|++++..+. +.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 243 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 243 -SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp -TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred -CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 566666666666655554 6666677777777777765555666667777777777777766554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=241.17 Aligned_cols=240 Identities=23% Similarity=0.218 Sum_probs=145.4
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..+. +++++|+|++|.++.. .+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.++.++. ..+
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-GAF 132 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT-TTS
T ss_pred cCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH-hHh
Confidence 4555443 5677788887777765 55667777777777777777776666667677777777777666664432 334
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
..+++|++|++++|.+.. ..+. .+..+ ++|++|++++|...+ .+++.
T Consensus 133 ~~l~~L~~L~L~~N~i~~--------------------------~~~~--~~~~l-~~L~~L~l~~~~~l~-~i~~~--- 179 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIES--------------------------IPSY--AFNRI-PSLRRLDLGELKRLS-YISEG--- 179 (440)
T ss_dssp CSCSSCCEEECCSCCCCE--------------------------ECTT--TTTTC-TTCCEEECCCCTTCC-EECTT---
T ss_pred hccccCceeeCCCCcccc--------------------------cCHH--HhhhC-cccCEeCCCCCCCcc-eeCcc---
Confidence 444455555544444332 2221 12222 666666666643322 33332
Q ss_pred ccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCC
Q 009835 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 345 (524)
.+..+++|++|++++|.++ .+| .+..+++|++|+|++|.+++..+..|..++
T Consensus 180 ---------------------~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 231 (440)
T 3zyj_A 180 ---------------------AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM----- 231 (440)
T ss_dssp ---------------------TTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----
T ss_pred ---------------------hhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-----
Confidence 3444455555555555554 233 245556666666666666655555555544
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
+|+.|++++|++++..+. +.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+..
T Consensus 232 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 232 -HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp -TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred -cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 666666666666666554 67777778888888877766666777778888888888887776653
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=244.11 Aligned_cols=227 Identities=26% Similarity=0.249 Sum_probs=154.0
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..+..|.++++|++|+|++|.+++. .+..|.++++|++|+|++|.+.+..+..|.+
T Consensus 75 ~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMEN--------NIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred CCccEEECcCC--------cCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 57899999995 88888899999999999999999999986 7789999999999999999999888888999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
+++|++|+|++|.+..++. ..+.++++|++|++++|. +...+ ...+..+++|++|++++|.+.+... +...
T Consensus 146 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l- 217 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKDMPN----LTPL- 217 (452)
T ss_dssp CTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCTTCCEEECTTSCCSSCCC----CTTC-
T ss_pred cCCCCEEECCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccC--hhhccCCCCCCEEECCCCccccccc----cccc-
Confidence 9999999999999986654 568899999999999854 43333 2356666666666666666654421 1222
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+.+ +++..+...++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus 218 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 218 VGLEELEMSGNHFPE--IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TTCCEEECTTSCCSE--ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ccccEEECcCCcCcc--cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 455555555555522 222222222245555555555544444444444555555555555544444444444445555
Q ss_pred EccCCCC
Q 009835 322 CLPYNKL 328 (524)
Q Consensus 322 ~Ls~n~l 328 (524)
+|++|.+
T Consensus 296 ~L~~Np~ 302 (452)
T 3zyi_A 296 HLHHNPW 302 (452)
T ss_dssp ECCSSCE
T ss_pred EccCCCc
Confidence 5554443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=230.82 Aligned_cols=209 Identities=22% Similarity=0.157 Sum_probs=122.3
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
+.++.++. .++ .+|..+ .++|++|++++|.+++. .+..+..+++|++|++++|.+.+..|..|.++++
T Consensus 14 ~~~~c~~~--------~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQ--------GLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSS--------CCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred eEEEcCcC--------Ccc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence 45667664 333 344433 46788888888888775 5567788888888888888888777777888888
Q ss_pred CcEEEccCCC-CCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc
Q 009835 166 LVYLHLENSN-LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244 (524)
Q Consensus 166 L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 244 (524)
|++|++++|. +..+.. ..+..+++|++|++++|.++... +..+..+++|++|++++|.+.+..+
T Consensus 82 L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~------------ 146 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD------------ 146 (285)
T ss_dssp CCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred CCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCH------------
Confidence 8888888886 554432 45666677777777776666553 2344555555555555555444333
Q ss_pred cEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEcc
Q 009835 245 ETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324 (524)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 324 (524)
..+...++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 147 -----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 147 -----------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp -----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----------------hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 211112244444444444443333344445555555555555554445555555555555555
Q ss_pred CCCCCCchhHHHHh
Q 009835 325 YNKLSGDLSEMIQN 338 (524)
Q Consensus 325 ~n~l~~~~~~~~~~ 338 (524)
+|.+++..+..+..
T Consensus 210 ~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 210 ANNLSALPTEALAP 223 (285)
T ss_dssp SSCCSCCCHHHHTT
T ss_pred CCcCCcCCHHHccc
Confidence 55555444444433
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=242.60 Aligned_cols=228 Identities=28% Similarity=0.275 Sum_probs=160.1
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..++.|+|+++ .+++..+..|.++++|++|+|++|.++.. .+..|.++++|++|+|++|.+....+..|.+
T Consensus 64 ~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHEN--------QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSC--------CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCcEEEccCC--------cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 56788999985 78888889999999999999999999986 6789999999999999999999888888999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
+++|++|+|++|.+..++. ..+.++++|++|++++|. +...+ ...+.++++|++|++++|.++.... +...
T Consensus 135 l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l- 206 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLRYLNLAMCNLREIPN----LTPL- 206 (440)
T ss_dssp CSSCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCSSCCEEECTTSCCSSCCC----CTTC-
T ss_pred cccCceeeCCCCcccccCH-HHhhhCcccCEeCCCCCCCcceeC--cchhhcccccCeecCCCCcCccccc----cCCC-
Confidence 9999999999999986654 568899999999999854 33333 2456677777777777776664422 2222
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+++ +++..+...++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus 207 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 207 IKLDELDLSGNHLSA--IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp SSCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred cccCEEECCCCccCc--cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 556666666665532 222222223355555555555555555555555555555555555554444455555555555
Q ss_pred EccCCCCC
Q 009835 322 CLPYNKLS 329 (524)
Q Consensus 322 ~Ls~n~l~ 329 (524)
+|++|.+.
T Consensus 285 ~L~~Np~~ 292 (440)
T 3zyj_A 285 HLHHNPWN 292 (440)
T ss_dssp ECCSSCEE
T ss_pred EcCCCCcc
Confidence 55555543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=235.10 Aligned_cols=201 Identities=24% Similarity=0.264 Sum_probs=157.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .|++
T Consensus 91 ~~L~~L~l~~n--------~l~~-lp~~---~~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 91 PHLESLVASCN--------SLTE-LPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp TTCSEEECCSS--------CCSS-CCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCCCEEEccCC--------cCCc-cccc---cCCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 46788888874 5665 5543 3789999999998886 3432 2689999999999886 66 5999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|++.+++. ...+|++|++++|.+++.+ .+..+++|++|++++|.+.+.... .+
T Consensus 152 l~~L~~L~l~~N~l~~lp~-----~~~~L~~L~L~~n~l~~l~----~~~~l~~L~~L~l~~N~l~~l~~~-------~~ 215 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNNSLKKLPDL-------PL 215 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSSCCCC-------CT
T ss_pred CCCCCEEECCCCcCcccCC-----CcccccEEECcCCcCCcCc----cccCCCCCCEEECCCCcCCcCCCC-------cC
Confidence 9999999999999886553 2359999999999998864 478899999999999998874331 26
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+. .++. +... ++|++|++++|++++ +|. .+++|+.|++++|.+++ +|.. .++|++|+
T Consensus 216 ~L~~L~l~~n~l~--~lp~-~~~l-~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 216 SLESIVAGNNILE--ELPE-LQNL-PFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp TCCEEECCSSCCS--SCCC-CTTC-TTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cccEEECcCCcCC--cccc-cCCC-CCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 8999999999984 4553 4444 499999999999985 443 24789999999999985 5543 37899999
Q ss_pred ccCCCCCC
Q 009835 323 LPYNKLSG 330 (524)
Q Consensus 323 Ls~n~l~~ 330 (524)
+++|.+++
T Consensus 284 ls~N~l~~ 291 (454)
T 1jl5_A 284 VSENIFSG 291 (454)
T ss_dssp CCSSCCSE
T ss_pred CcCCccCc
Confidence 99998886
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=228.78 Aligned_cols=231 Identities=26% Similarity=0.297 Sum_probs=149.6
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCC-CCCCCCCchhhhccc
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNN-LPSSSVYPWLFNLSR 268 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 268 (524)
+|++|++++|.++..+ +..+..+++|++|++++|.+.+..+. .+..+ ++|++|++++|. +. .+++..+...+
T Consensus 33 ~l~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l-~~L~~L~l~~n~~l~--~~~~~~~~~l~ 105 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVP--AASFRACRNLTILWLHSNVLARIDAA--AFTGL-ALLEQLDLSDNAQLR--SVDPATFHGLG 105 (285)
T ss_dssp TCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTT--TTTTC-TTCCEEECCSCTTCC--CCCTTTTTTCT
T ss_pred CceEEEeeCCcCCccC--HHHcccCCCCCEEECCCCccceeCHh--hcCCc-cCCCEEeCCCCCCcc--ccCHHHhcCCc
Confidence 4444444444443332 12344444444445544444444332 22222 556666666664 42 23222223333
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L 179 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH------SL 179 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc------cc
Confidence 777777777777766666777777888888888888766666677788888888888888766666666554 78
Q ss_pred cEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCC
Q 009835 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNP 427 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~ 427 (524)
++|++++|.+++..+. +..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.++.......+.......+.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~ 259 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECC
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCc
Confidence 8888888888877665 888889999999999998777777888999999999999998877754444444444455555
Q ss_pred CCCCCC
Q 009835 428 ELCGLP 433 (524)
Q Consensus 428 ~~C~~~ 433 (524)
..|..|
T Consensus 260 ~~c~~p 265 (285)
T 1ozn_A 260 VPCSLP 265 (285)
T ss_dssp CBEEES
T ss_pred cccCCc
Confidence 555433
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=238.38 Aligned_cols=227 Identities=22% Similarity=0.357 Sum_probs=172.7
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ |.+.+.+|..+.++++|++|++++|.+++. +|..+.++++|++|++++|.+.+.+|..+.+
T Consensus 76 ~~L~~L~L~~~-------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 76 PYLNFLYIGGI-------NNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp TTCSEEEEEEE-------TTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred CCCCeeeCCCC-------CcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 46888999842 378999999999999999999999999976 8999999999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+.+... . .+..++ +
T Consensus 148 l~~L~~L~L~~N~l~~~~p-~--------------------------~l~~l~--------------------------~ 174 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIP-D--------------------------SYGSFS--------------------------K 174 (313)
T ss_dssp CTTCCEEECCSSCCEEECC-G--------------------------GGGCCC--------------------------T
T ss_pred CCCCCeEECcCCcccCcCC-H--------------------------HHhhhh--------------------------h
Confidence 9999999998887762111 1 222222 1
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+.+ .++..+... .|++|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|+
T Consensus 175 ~L~~L~L~~N~l~~-~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 175 LFTSMTISRNRLTG-KIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD 250 (313)
T ss_dssp TCCEEECCSSEEEE-ECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred cCcEEECcCCeeec-cCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence 44444444444433 333433333 399999999999999999999999999999999999976665 77788888888
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENR 380 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~ 380 (524)
+++|.+++..|..+..++ +|++|++++|++++.+|....+++|+.|++++|.
T Consensus 251 Ls~N~l~~~~p~~l~~l~------~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLK------FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSCCEECCCGGGGGCT------TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CcCCcccCcCChHHhcCc------CCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 888888777777766654 6666666666666655555555555555555554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=229.57 Aligned_cols=235 Identities=21% Similarity=0.216 Sum_probs=165.8
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCc
Q 009835 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLR 192 (524)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 192 (524)
..+++++|+|++|.++. +|..+.++++|++|+|++|.+. .+|..++++++|++|+|++|.+..++ ..+.++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP--ASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC--GGGGGCTTCC
T ss_pred cccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc--HHHhcCcCCC
Confidence 45789999999999985 7888888999999999999988 78888899999999999999888543 5577788888
Q ss_pred EEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccE
Q 009835 193 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQY 272 (524)
Q Consensus 193 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 272 (524)
+|++++|.+.+.. +..+.. ..+ .+ .+ ..+++|++|++++|.+ ..+|..+.... +|++
T Consensus 154 ~L~L~~n~~~~~~--p~~~~~------~~~-----~~------~~-~~l~~L~~L~L~~n~l--~~lp~~l~~l~-~L~~ 210 (328)
T 4fcg_A 154 ELSIRACPELTEL--PEPLAS------TDA-----SG------EH-QGLVNLQSLRLEWTGI--RSLPASIANLQ-NLKS 210 (328)
T ss_dssp EEEEEEETTCCCC--CSCSEE------EC------CC------CE-EESTTCCEEEEEEECC--CCCCGGGGGCT-TCCE
T ss_pred EEECCCCCCcccc--ChhHhh------ccc-----hh------hh-ccCCCCCEEECcCCCc--CcchHhhcCCC-CCCE
Confidence 8888876655432 112211 000 00 11 1226666666666666 34555554444 7777
Q ss_pred EEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEE
Q 009835 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVC 352 (524)
Q Consensus 273 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 352 (524)
|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|+
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~------~L~~L~ 283 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT------QLEKLD 283 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT------TCCEEE
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC------CCCEEe
Confidence 7777777764 455677777777777777777777777777777777777777777777777666654 777777
Q ss_pred cCCCCCccCCCC-CCCCCCCcEEEccCCcCc
Q 009835 353 LEGNDITGPLPD-LGGFSSLKILVLGENRLN 382 (524)
Q Consensus 353 Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 382 (524)
+++|.+.+.+|. +.++++|+.+++..+.+.
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777776666 777777777777766554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-29 Score=262.05 Aligned_cols=332 Identities=20% Similarity=0.182 Sum_probs=181.1
Q ss_pred cEEEEEcCCCCCCCCCCCccee----ecCccccCCCCCCEEEccCCCCCCCCCccccCCCC----CCCEEEccCCCCCc-
Q 009835 84 HVKVLNLRRSDDENSRGTVLKG----TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLS----RLRYLNLSCGTSLL- 154 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~----~L~~L~L~~n~~~~- 154 (524)
+++.|+|+++ .+++ .++..+..+++|++|++++|.+++.........++ +|++|+|++|.+..
T Consensus 29 ~L~~L~L~~~--------~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 29 QCQVVRLDDC--------GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp TCSEEEEESS--------CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred CccEEEccCC--------CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 4556666664 3332 34555666677777777777665431222223344 57777777776663
Q ss_pred ---cCCccccCCCCCcEEEccCCCCCCCCCc----hhcCCCCCCcEEEccCCCCCCCC--CchHhhhcccCCCEEEeeCC
Q 009835 155 ---KVPRPFQYLSGLVYLHLENSNLFSLGSL----QWLSHLSSLRHLDLSYINLTKSS--DWFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 155 ---~~p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~l~~l~~L~~L~L~~n 225 (524)
.++..+.++++|++|++++|.+...... ......++|++|++++|.++... .++..+..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 4466666777777777777765422111 01223456777777777666542 22345556677777777777
Q ss_pred CCCCCCCCchhhhc----ccCcccEEEccCCCCCCCC---CCchhhhccccccEEEeeccccccccch-----hhhcccc
Q 009835 226 ALPPINPSSIWHFN----LSTSIETLDLSDNNLPSSS---VYPWLFNLSRNIQYLNLGFNSLQGSIPE-----AFQLMVS 293 (524)
Q Consensus 226 ~l~~~~~~~~~~~~----~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-----~~~~l~~ 293 (524)
.+.+..+. .+.. ..++|++|++++|.+++.. ++..+. ..++|++|++++|.+++.... .+..+++
T Consensus 181 ~i~~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 181 DINEAGVR--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp BCHHHHHH--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CcchHHHH--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 65433221 1111 1246777777777664311 122222 233677777777766543221 1224566
Q ss_pred cceEeecCcccccc----cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC----CC-
Q 009835 294 LRFLYLTSNELEGG----IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL----PD- 364 (524)
Q Consensus 294 L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~- 364 (524)
|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+...-. ...++|++|++++|.+++.. +.
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-EPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc-cCCccceeeEcCCCCCchHHHHHHHHH
Confidence 77777777766643 4555666677777777777666555544443210 01136777777777666542 22
Q ss_pred CCCCCCCcEEEccCCcCccccchhhhc-----CCCCCEEECcCCcCee----eCCCC-CcccccccccccCCC
Q 009835 365 LGGFSSLKILVLGENRLNGTIDKSLSQ-----LLKLESLSLGRNSFTG----KIPLG-TQLQSFNASVYAGNP 427 (524)
Q Consensus 365 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~----~~p~~-~~~~~~~~~~~~gn~ 427 (524)
+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|.. .....+....+.+|+
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 445566777777777666554444432 4567777777776664 33321 123444445555554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-28 Score=242.16 Aligned_cols=257 Identities=21% Similarity=0.183 Sum_probs=162.4
Q ss_pred cceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCC
Q 009835 102 VLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGS 181 (524)
Q Consensus 102 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 181 (524)
.+...+...+..+++|++|++++|.+++. .|..+..+++|++|+|++|.+.+..+ +..+++|++|++++|.+.+++
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~- 96 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL- 96 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-
Confidence 44433334444555666666666666654 45566666666666666666654433 555555566655555544221
Q ss_pred chhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCc
Q 009835 182 LQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYP 261 (524)
Q Consensus 182 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 261 (524)
..+ +|++|++++|.+.+..+. .+ ++|++|++++|.+.+ +++
T Consensus 97 -----~~~--------------------------~L~~L~l~~n~l~~~~~~-----~~-~~L~~L~l~~N~l~~--~~~ 137 (317)
T 3o53_A 97 -----VGP--------------------------SIETLHAANNNISRVSCS-----RG-QGKKNIYLANNKITM--LRD 137 (317)
T ss_dssp -----ECT--------------------------TCCEEECCSSCCSEEEEC-----CC-SSCEEEECCSSCCCS--GGG
T ss_pred -----CCC--------------------------CcCEEECCCCccCCcCcc-----cc-CCCCEEECCCCCCCC--ccc
Confidence 224 444444444444433221 12 567777777777733 333
Q ss_pred hhhhccccccEEEeeccccccccchhh-hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhcc
Q 009835 262 WLFNLSRNIQYLNLGFNSLQGSIPEAF-QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLS 340 (524)
Q Consensus 262 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 340 (524)
..+...++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++..+. +..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~ 214 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAA 214 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcccC
Confidence 233333478888888887776666655 3678888888888888754 32 33478888888888888865444 66554
Q ss_pred CCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCc-cccchhhhcCCCCCEEECcCC-cCeeeCC
Q 009835 341 GGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLN-GTIDKSLSQLLKLESLSLGRN-SFTGKIP 410 (524)
Q Consensus 341 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N-~l~~~~p 410 (524)
+|+.|++++|++++.++.+..+++|+.|++++|.+. +.+|..+..+++|+.+++++| .+.|..|
T Consensus 215 ------~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 215 ------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp ------TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred ------cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 788888888888866555888888888888888888 677788888888888888743 4444433
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-28 Score=254.71 Aligned_cols=308 Identities=21% Similarity=0.218 Sum_probs=233.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCcccc-CCC----CCCEEEccCCCCCCC---CCccccCCCCCCCEEEccCCCCCc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALL-KLH----DLRHLDLSNNHFGGS---PLPEFIGSLSRLRYLNLSCGTSLL 154 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~-~l~----~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~~~~ 154 (524)
.+++.|+|+++ .+.+..+..+. .++ +|++|++++|.++.. .++..+..+++|++|++++|.+.+
T Consensus 56 ~~L~~L~Ls~n--------~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 56 PALAELNLRSN--------ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp TTCCEEECTTC--------CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCcCEEeCCCC--------cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 57899999995 56554443333 344 799999999999852 158889999999999999999876
Q ss_pred cCCcccc-----CCCCCcEEEccCCCCCCCCC---chhcCCCCCCcEEEccCCCCCCCCCchHhhh-----cccCCCEEE
Q 009835 155 KVPRPFQ-----YLSGLVYLHLENSNLFSLGS---LQWLSHLSSLRHLDLSYINLTKSSDWFQVVA-----KLRSLKTLV 221 (524)
Q Consensus 155 ~~p~~~~-----~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-----~l~~L~~L~ 221 (524)
..+..+. ..++|++|++++|.+..... ...+..+++|++|++++|.+++.. ...+. ..++|++|+
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG--VRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH--HHHHHHHHHHSCCCCCEEE
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH--HHHHHHHHhcCCCCceEEE
Confidence 5444332 36789999999999875331 244667899999999999987542 12222 356999999
Q ss_pred eeCCCCCCCCCC--chhhhcccCcccEEEccCCCCCCCCCC----chhhhccccccEEEeeccccccc----cchhhhcc
Q 009835 222 LHSCALPPINPS--SIWHFNLSTSIETLDLSDNNLPSSSVY----PWLFNLSRNIQYLNLGFNSLQGS----IPEAFQLM 291 (524)
Q Consensus 222 L~~n~l~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l 291 (524)
+++|.+.+.... ...+... ++|++|++++|.+.+ ... +.+....++|++|++++|.+++. ++..+..+
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred ccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCCh-HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 999988764211 0123344 999999999998844 211 22222345999999999999864 57778889
Q ss_pred cccceEeecCcccccccchhhcC-----CCCCCEEEccCCCCCCch----hHHHHhccCCCCCCCccEEEcCCCCCccCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGK-----MCSLNRLCLPYNKLSGDL----SEMIQNLSGGCTMNSLEGVCLEGNDITGPL 362 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~ 362 (524)
++|++|++++|.+.+..+..+.. .++|++|++++|.+++.. +..+..++ +|++|++++|.+++..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~------~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR------FLLELQISNNRLEDAG 357 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS------SCCEEECCSSBCHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC------CccEEEccCCcccccc
Confidence 99999999999998655544443 369999999999998763 45555545 9999999999998754
Q ss_pred CC-C----C-CCCCCcEEEccCCcCcc----ccchhhhcCCCCCEEECcCCcCeee
Q 009835 363 PD-L----G-GFSSLKILVLGENRLNG----TIDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 363 ~~-~----~-~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
+. + . ..++|++|++++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 32 2 2 26899999999999986 7888899999999999999998853
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-27 Score=243.42 Aligned_cols=233 Identities=20% Similarity=0.140 Sum_probs=112.2
Q ss_pred CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEE
Q 009835 141 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220 (524)
Q Consensus 141 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 220 (524)
+|++|+|++|.+.+..|..|.++++|++|+|++|.+.+... +..+++|++|++++|.+++.+ ..++|++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-------~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-------VGPSIETL 104 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-------ECTTCCEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-------CCCCcCEE
Confidence 45555555555555545555555555555555555543221 455555555555555544332 12455555
Q ss_pred EeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh-cccccceEee
Q 009835 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-LMVSLRFLYL 299 (524)
Q Consensus 221 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L 299 (524)
++++|.+.+..+. .+ ++|++|++++|.+++ ..+..+... ++|+.|++++|.+++..|..+. .+++|+.|+|
T Consensus 105 ~L~~N~l~~~~~~-----~l-~~L~~L~L~~N~l~~-~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 105 HAANNNISRVSCS-----RG-QGKKNIYLANNKITM-LRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp ECCSSCCCCEEEC-----CC-SSCEEEECCSSCCCS-GGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred ECcCCcCCCCCcc-----cc-CCCCEEECCCCCCCC-CCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 5555554443321 11 455555555555533 222222222 2555555555555554454443 4555555555
Q ss_pred cCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCC
Q 009835 300 TSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGEN 379 (524)
Q Consensus 300 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N 379 (524)
++|.+++..+ +..+++|++|+|++|.+++.++. +..++ +|+.|++++|.+++.++.+..+++|+.|++++|
T Consensus 177 s~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~------~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 177 QYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAA------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGT------TCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred CCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCC------CccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 5555553321 22355555555555555543332 33333 555555555555544333445555555555555
Q ss_pred cCc-cccchhhhcCCCCCEEEC
Q 009835 380 RLN-GTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 380 ~l~-~~~p~~~~~l~~L~~L~l 400 (524)
.+. +.+|..+..++.|+.+++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEec
Confidence 554 334444444444444433
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-28 Score=238.93 Aligned_cols=251 Identities=21% Similarity=0.147 Sum_probs=134.2
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCC-CccCCcccc-------CCCCCcEEEccCCCCCCCCCc
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTS-LLKVPRPFQ-------YLSGLVYLHLENSNLFSLGSL 182 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~ 182 (524)
++..++|++|++++|.+ . +|..+... |++|+|++|.+ ...+|..+. ++++|++|++++|.+.+....
T Consensus 39 ~~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455677777777777 2 56555433 67777777766 334555444 677777777777777643322
Q ss_pred hh-cCCCCCCcEEEccCCCCCCCCCchHhhhcc-----cCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCC
Q 009835 183 QW-LSHLSSLRHLDLSYINLTKSSDWFQVVAKL-----RSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPS 256 (524)
Q Consensus 183 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 256 (524)
.. +..+++|++|++++|.+++.+. .+..+ ++|++|++++|.+.+..+. .+... ++|++|++++|++.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDA---WLAELQQWLKPGLKVLSIAQAHSLNFSCE--QVRVF-PALSTLDLSDNPELG 187 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSS---HHHHHHTTCCTTCCEEEEESCSCCCCCTT--TCCCC-SSCCEEECCSCTTCH
T ss_pred HHHHhcCCCccEEEccCCCCcchhH---HHHHHHHhhcCCCcEEEeeCCCCccchHH--HhccC-CCCCEEECCCCCcCc
Confidence 22 2677777777777777776643 44444 6677777777776665543 22333 566666666665432
Q ss_pred CC--CCchh-hhccccccEEEeeccccccc--cc-hhhhcccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCCC
Q 009835 257 SS--VYPWL-FNLSRNIQYLNLGFNSLQGS--IP-EAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 257 ~~--~~~~~-~~~~~~L~~L~Ls~n~l~~~--~~-~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~ 329 (524)
. .++.+ +...++|++|++++|.+++. ++ ..+..+++|++|++++|.+++..| ..+..++
T Consensus 188 -~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~------------- 253 (312)
T 1wwl_A 188 -ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS------------- 253 (312)
T ss_dssp -HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-------------
T ss_pred -chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-------------
Confidence 1 11111 01222455555555554421 11 122334444444444444444332 2223333
Q ss_pred CchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
+|++|++++|+++..+..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 254 -----------------~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 -----------------QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -----------------TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -----------------CCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55555555555553222233 5666666666666644 43 5666666666666666653
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-28 Score=236.02 Aligned_cols=258 Identities=20% Similarity=0.186 Sum_probs=183.1
Q ss_pred ccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcc
Q 009835 135 FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL 214 (524)
Q Consensus 135 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 214 (524)
.++..++|++|++++|.+ .+|..+... |++|++++|.+.....+..+. .....+..+
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~-------------------~~~~~~~~l 94 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRIL-------------------FGALRVLGI 94 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHH-------------------HHHHHHHTT
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHH-------------------HHHHHhcCc
Confidence 344556677777777776 556554433 566666665553222211111 000011245
Q ss_pred cCCCEEEeeCCCCCCCCCCchhh-hcccCcccEEEccCCCCCCCCCCchhhhc----cccccEEEeeccccccccchhhh
Q 009835 215 RSLKTLVLHSCALPPINPSSIWH-FNLSTSIETLDLSDNNLPSSSVYPWLFNL----SRNIQYLNLGFNSLQGSIPEAFQ 289 (524)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~~~ 289 (524)
++|++|++++|.+.+..|. .+ ...+++|++|++++|.+.+ .+..+... .++|++|++++|++++..+..+.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPP--PLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CCccEEEccCCcccchhHH--HHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 6666666666666655554 22 1233778888888887754 25555554 15899999999999988878899
Q ss_pred cccccceEeecCcccccc--cchhh--cCCCCCCEEEccCCCCCCch--h-HHHHhccCCCCCCCccEEEcCCCCCccCC
Q 009835 290 LMVSLRFLYLTSNELEGG--IPKFF--GKMCSLNRLCLPYNKLSGDL--S-EMIQNLSGGCTMNSLEGVCLEGNDITGPL 362 (524)
Q Consensus 290 ~l~~L~~L~Ls~n~l~~~--~p~~l--~~l~~L~~L~Ls~n~l~~~~--~-~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~ 362 (524)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++.. + ..+..++ +|++|++++|++++.+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV------QLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC------CCSEEECTTSCCCSSC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC------CCCEEECCCCcCCccc
Confidence 999999999999998765 34444 88999999999999998432 2 3334444 9999999999999977
Q ss_pred C--CCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCCC
Q 009835 363 P--DLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPEL 429 (524)
Q Consensus 363 ~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~~ 429 (524)
| .+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |....+..+....+.+|+..
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 4 3777899999999999999 7787776 8999999999999976 76667788888889999864
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=226.38 Aligned_cols=238 Identities=20% Similarity=0.187 Sum_probs=175.1
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
+.++++.+.+... ....+..+++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..
T Consensus 13 ~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------- 74 (317)
T 3o53_A 13 KIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----------------- 74 (317)
T ss_dssp EEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-----------------
T ss_pred eEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-----------------
Confidence 3444444444332 3334445556666666666666555555666666666666665554222
Q ss_pred CCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec
Q 009835 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF 277 (524)
Q Consensus 198 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 277 (524)
.+..+++|++|++++|.+.+..+ . ++|++|++++|.+.+ ++.. ..++|++|++++
T Consensus 75 ------------~~~~l~~L~~L~Ls~n~l~~l~~-------~-~~L~~L~l~~n~l~~--~~~~---~~~~L~~L~l~~ 129 (317)
T 3o53_A 75 ------------DLESLSTLRTLDLNNNYVQELLV-------G-PSIETLHAANNNISR--VSCS---RGQGKKNIYLAN 129 (317)
T ss_dssp ------------EETTCTTCCEEECCSSEEEEEEE-------C-TTCCEEECCSSCCSE--EEEC---CCSSCEEEECCS
T ss_pred ------------hhhhcCCCCEEECcCCccccccC-------C-CCcCEEECCCCccCC--cCcc---ccCCCCEEECCC
Confidence 13444555555555555443322 2 899999999999954 3332 235899999999
Q ss_pred cccccccchhhhcccccceEeecCcccccccchhhc-CCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCC
Q 009835 278 NSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFG-KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGN 356 (524)
Q Consensus 278 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n 356 (524)
|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++.... ..+++|++|++++|
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--------VVFAKLKTLDLSSN 201 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--------CCCTTCCEEECCSS
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--------cccccCCEEECCCC
Confidence 999987788899999999999999999987777764 789999999999999865221 12559999999999
Q ss_pred CCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 357 DITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 357 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
++++.++.+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+
T Consensus 202 ~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 202 KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred cCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 99988888999999999999999999 578889999999999999999993
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=239.36 Aligned_cols=218 Identities=22% Similarity=0.201 Sum_probs=190.2
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
.+++|++|+|++|.+...+. ..+..+++|++|+|++|.+++.. .+..+++|++|++++|.+.+..+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~----~l~~l~~L~~L~Ls~N~l~~l~~~-------- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQELLVG-------- 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCG-GGGTTCTTCCEEECTTSCCEEEE----ECTTCTTCCEEECCSSEEEEEEEC--------
T ss_pred cCCCccEEEeeCCcCCCCCH-HHHhCCCCCCEEEeeCCCCCCCc----ccccCCCCCEEEecCCcCCCCCCC--------
Confidence 34589999999999997554 67899999999999999998764 288999999999999998765442
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhc-CCCCCCE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFG-KMCSLNR 320 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~ 320 (524)
++|++|++++|.+.+ ++.. ..++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++
T Consensus 99 ~~L~~L~L~~N~l~~--~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISR--VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCC--EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCC--CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 899999999999955 3332 235899999999999998888999999999999999999998888886 7999999
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
|+|++|.+++..+. ..+++|+.|+|++|.+++.++.+..+++|+.|+|++|.+++ +|..+..+++|+.|++
T Consensus 174 L~Ls~N~l~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 174 LNLQYNFIYDVKGQ--------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp EECTTSCCCEEECC--------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred EecCCCcccccccc--------ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 99999999876322 23559999999999999988889999999999999999995 7888999999999999
Q ss_pred cCCcCe
Q 009835 401 GRNSFT 406 (524)
Q Consensus 401 ~~N~l~ 406 (524)
++|++.
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 999998
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=206.58 Aligned_cols=218 Identities=23% Similarity=0.246 Sum_probs=146.8
Q ss_pred CCCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEc
Q 009835 68 RDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNL 147 (524)
Q Consensus 68 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L 147 (524)
.++|.|.|+.|... +.++.++++++ .++ .+|..+. ++|++|++++|.++.. .+..|.++++|++|++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~--------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSK--------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYL 68 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTS--------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEEC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCC--------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEEC
Confidence 47899999988532 34567888874 454 3555444 5788888888888875 5567888888888888
Q ss_pred cCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCC
Q 009835 148 SCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCAL 227 (524)
Q Consensus 148 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l 227 (524)
++|.+....+..|.++++|++|++++|.+..++. ..+..+++|++|++++|.++..+ +..+..+++|++|++++|.+
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeC--HHHhCcCcCCCEEECCCCcC
Confidence 8888876666667778888888888887775543 44566667777777776666554 12344444444444444444
Q ss_pred CCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccc
Q 009835 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG 307 (524)
Q Consensus 228 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 307 (524)
.+. ++..+...++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 146 ~~~-----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 146 QSL-----------------------------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CCC-----------------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred Ccc-----------------------------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 433 333233334666666666666655555666777778888888877766
Q ss_pred cchhhcCCCCCCEEEccCCCCCC
Q 009835 308 IPKFFGKMCSLNRLCLPYNKLSG 330 (524)
Q Consensus 308 ~p~~l~~l~~L~~L~Ls~n~l~~ 330 (524)
.+..+..+++|+.|++++|.+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHhccccCCCEEEecCCCeeC
Confidence 56667777888888888887654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=222.73 Aligned_cols=258 Identities=24% Similarity=0.245 Sum_probs=212.0
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
.++++|++++|.++. +|..+. ++|++|+|++|.+.. +|. .+++|++|+|++|.++.++. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEE
T ss_pred CCCcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEE
Confidence 469999999999985 777665 899999999999884 554 67999999999999987663 78999999
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.++..+. .+++|+.|++++|.++..... +++|++|++++|.+++ ++. .+++|+.|+
T Consensus 107 ~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~lp~~-------l~~L~~L~Ls~N~l~~--l~~----~~~~L~~L~ 167 (622)
T 3g06_A 107 SIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVL-------PPGLQELSVSDNQLAS--LPA----LPSELCKLW 167 (622)
T ss_dssp EECSCCCCCCCC------CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSC--CCC----CCTTCCEEE
T ss_pred ECcCCcCCCCCC------CCCCcCEEECCCCCCCcCCCC-------CCCCCEEECcCCcCCC--cCC----ccCCCCEEE
Confidence 999999998763 678999999999999875442 2899999999999944 443 235899999
Q ss_pred eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcC
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
+++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++.... .+++|+.|+++
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~----------~~~~L~~L~Ls 229 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA----------LPSGLKELIVS 229 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC----------CCTTCCEEECC
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC----------CCCCCCEEEcc
Confidence 99999995 55 457899999999999995 454 34799999999999985432 12489999999
Q ss_pred CCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCCCCC
Q 009835 355 GNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNPELC 430 (524)
Q Consensus 355 ~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C 430 (524)
+|.+++.+ ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|.. ..+..+..+.+.+|+...
T Consensus 230 ~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 230 GNRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp SSCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 99999754 45689999999999999 4565 6789999999999999 66653 345667777888998643
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-24 Score=203.96 Aligned_cols=215 Identities=23% Similarity=0.196 Sum_probs=147.9
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCc
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 243 (524)
++|++|++++|.+..++. ..+.++++|++|++++|.++..+ ...+..+ ++
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l---------------------------~~ 77 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIE--DGAYQSL---------------------------SH 77 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCEEC--TTTTTTC---------------------------TT
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCccC--HHHccCC---------------------------cC
Confidence 356666666666654432 34555566666666665555443 1233444 45
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccc-cchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG-IPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 322 (524)
|++|++++|.+.+ +++..+...++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 78 L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 78 LSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCEEECCCCccCc--cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 5555555555522 2222222233666777777666655554577778888888888888753 578888888899999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCcc-EEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLE-GVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
+++|.+++..+..+..+. .++.|. .|++++|.+++..+......+|+.|++++|++++..+..+..+++|+.|+++
T Consensus 156 Ls~N~l~~~~~~~~~~l~---~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLH---QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CCSSCCCEECGGGGHHHH---TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred CCCCCCCcCCHHHhhhhh---hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 999988887777777665 112233 8999999999887775556689999999999997777778999999999999
Q ss_pred CCcCeeeCCCCC
Q 009835 402 RNSFTGKIPLGT 413 (524)
Q Consensus 402 ~N~l~~~~p~~~ 413 (524)
+|+++|.+|...
T Consensus 233 ~N~~~c~c~~l~ 244 (276)
T 2z62_A 233 TNPWDCSCPRID 244 (276)
T ss_dssp SSCBCCCTTTTH
T ss_pred CCcccccCCchH
Confidence 999999988643
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=199.78 Aligned_cols=211 Identities=23% Similarity=0.236 Sum_probs=110.9
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
++|++|++++|.+++. .+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+...+. ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEE
Confidence 4677777777777764 44467777777777777777766666666777777777777776654332 335555555555
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.+..... ..+..+ ++|++|++++|.+.+..++..+.... +|++|+
T Consensus 106 ~l~~n~l~~~~~--~~~~~l---------------------------~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~ 155 (276)
T 2z62_A 106 VAVETNLASLEN--FPIGHL---------------------------KTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLD 155 (276)
T ss_dssp ECTTSCCCCSTT--CCCTTC---------------------------TTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEE
T ss_pred ECCCCCccccCc--hhcccC---------------------------CCCCEEECcCCccceecCchhhccCC-CCCEEE
Confidence 555555544321 112222 44555555555443212233333332 555555
Q ss_pred eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcC
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
+++|++++..+..+..+++|+.|.+ +|++++|.+++..+..+.. .+|++|+++
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l--------------------~L~ls~n~l~~~~~~~~~~-------~~L~~L~L~ 208 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNL--------------------SLDLSLNPMNFIQPGAFKE-------IRLKELALD 208 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCE--------------------EEECCSSCCCEECTTSSCS-------CCEEEEECC
T ss_pred CCCCCCCcCCHHHhhhhhhccccce--------------------eeecCCCcccccCccccCC-------CcccEEECC
Confidence 5555554443444444444431100 3444444444333222211 145555555
Q ss_pred CCCCccCCCC-CCCCCCCcEEEccCCcCccc
Q 009835 355 GNDITGPLPD-LGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 355 ~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 384 (524)
+|++++.++. +..+++|+.|++++|.+++.
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCceeecCHhHhcccccccEEEccCCccccc
Confidence 5555554444 45666666667766666643
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=197.23 Aligned_cols=185 Identities=27% Similarity=0.325 Sum_probs=130.9
Q ss_pred CCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccc
Q 009835 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLR 295 (524)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 295 (524)
++++|++++|.+....+. .+..+ ++|++|++++|.+ ..+++..+...++|++|++++|.+++..+..+..+++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~--~~~~l-~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSK--AFHRL-TKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TCSEEECCSSCCSCCCTT--SSSSC-TTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCEEECcCCCCCeeCHH--HhcCC-CCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 344444444444443331 12222 5555555555555 234444444344677777777777655555667777788
Q ss_pred eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEE
Q 009835 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKIL 374 (524)
Q Consensus 296 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L 374 (524)
+|++++|.+++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+. +..+++|++|
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT------SLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc------ccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 888888888777677777888888888888888776666666554 888888888888877766 8889999999
Q ss_pred EccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 375 VLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 375 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
++++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 9999999977777788999999999999999988764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-24 Score=217.57 Aligned_cols=260 Identities=20% Similarity=0.177 Sum_probs=118.0
Q ss_pred EEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCC----ccccCCC-CCcEEEccCCCCCCCCCchhcCCC-----C
Q 009835 120 LDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP----RPFQYLS-GLVYLHLENSNLFSLGSLQWLSHL-----S 189 (524)
Q Consensus 120 L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l-----~ 189 (524)
+++++|.+++. +|..+...++|++|+|++|.+.+..+ ..+.+++ +|++|+|++|.+..... ..+..+ +
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCT
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCC
Confidence 34455555543 44444444445555555555544433 3444454 55555555555543221 222221 5
Q ss_pred CCcEEEccCCCCCCCCC--chHhhhcc-cCCCEEEeeCCCCCCCCCCchh--hhcccCcccEEEccCCCCCCCCCCchh-
Q 009835 190 SLRHLDLSYINLTKSSD--WFQVVAKL-RSLKTLVLHSCALPPINPSSIW--HFNLSTSIETLDLSDNNLPSSSVYPWL- 263 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~--~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~- 263 (524)
+|++|++++|.+++... +...+..+ ++|++|++++|.+.+..+..+. +....++|++|++++|.+.+ .....+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~ 159 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-KSSDELI 159 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-SCHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH-HHHHHHH
Confidence 55555555555544321 11122333 5555555555555443332000 01111455666666665532 111111
Q ss_pred ---hhccccccEEEeeccccccccchhhhc----c-cccceEeecCcccccc----cchhhcC-CCCCCEEEccCCCCCC
Q 009835 264 ---FNLSRNIQYLNLGFNSLQGSIPEAFQL----M-VSLRFLYLTSNELEGG----IPKFFGK-MCSLNRLCLPYNKLSG 330 (524)
Q Consensus 264 ---~~~~~~L~~L~Ls~n~l~~~~~~~~~~----l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~n~l~~ 330 (524)
....++|++|++++|.+++..+..+.. . ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 112225666666666665544433332 2 3566666666665542 3333433 2356666666666655
Q ss_pred chhHHHHhccCCCCCCCccEEEcCCCCCccCCC--------CCCCCCCCcEEEccCCcCccc
Q 009835 331 DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP--------DLGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 331 ~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~--------~~~~l~~L~~L~Ls~N~l~~~ 384 (524)
..+..+..+. ..+++|+.|++++|.+.+..+ .+..+++|+.||+++|.+.+.
T Consensus 240 ~~~~~l~~~~--~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLENLKLLK--DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHHHHHTT--TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHH--hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5544443321 123345555555554322211 234455555555555555444
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=200.11 Aligned_cols=131 Identities=25% Similarity=0.295 Sum_probs=86.0
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L 183 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT------QL 183 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc------cC
Confidence 555555555555544444455566666666666666655555556666666666666666665555555443 67
Q ss_pred cEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC
Q 009835 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 412 (524)
++|++++|++++.++. +..+++|+.|++++|.+.+. +++|+.+++..|.++|.+|..
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 7777777777766665 67778888888888877643 446777888888888888854
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-24 Score=212.26 Aligned_cols=259 Identities=18% Similarity=0.149 Sum_probs=198.2
Q ss_pred EEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCc---hhcCCCC-CCcEEEccCCCCCCCCCchHhhhcc-----
Q 009835 144 YLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSL---QWLSHLS-SLRHLDLSYINLTKSSDWFQVVAKL----- 214 (524)
Q Consensus 144 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~l----- 214 (524)
++++++|.+++.+|..+...++|++|+|++|.+...+.. ..+..++ +|++|++++|.+++.. +..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN--SDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC--HHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH--HHHHHHHHhccC
Confidence 568899999999988888888899999999999865431 4577888 9999999999998874 3455554
Q ss_pred cCCCEEEeeCCCCCCCCCCchh-hhccc-CcccEEEccCCCCCCCCCCchhhhc----cccccEEEeecccccccc----
Q 009835 215 RSLKTLVLHSCALPPINPSSIW-HFNLS-TSIETLDLSDNNLPSSSVYPWLFNL----SRNIQYLNLGFNSLQGSI---- 284 (524)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~~~-~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~---- 284 (524)
++|++|++++|.+.+..+..+. ..... ++|++|++++|.+++ ..+..+... +++|++|++++|.+++..
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 9999999999999876653111 11222 799999999999965 333333332 358999999999998644
Q ss_pred chhhhccc-ccceEeecCcccccccchhh----cCC-CCCCEEEccCCCCCCch----hHHHHhccCCCCCCCccEEEcC
Q 009835 285 PEAFQLMV-SLRFLYLTSNELEGGIPKFF----GKM-CSLNRLCLPYNKLSGDL----SEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 285 ~~~~~~l~-~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
+..+...+ +|++|++++|.+++..+..+ ..+ ++|++|+|++|.+++.. +..+.... ++|++|+|+
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~-----~~L~~L~Ls 233 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP-----NHVVSLNLC 233 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC-----TTCCEEECC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC-----CCceEEECc
Confidence 34445555 99999999999997776544 455 59999999999998743 44444421 389999999
Q ss_pred CCCCccCCC----C-CCCCCCCcEEEccCCcCcccc-------chhhhcCCCCCEEECcCCcCeeeCC
Q 009835 355 GNDITGPLP----D-LGGFSSLKILVLGENRLNGTI-------DKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 355 ~n~l~~~~~----~-~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+|.+++..+ . +..+++|++|++++|.+.+.. +..+..+++|+.||+++|++....+
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 999998654 2 578899999999999955443 3356678889999999999886633
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=199.80 Aligned_cols=185 Identities=24% Similarity=0.293 Sum_probs=115.8
Q ss_pred hcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcc
Q 009835 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291 (524)
Q Consensus 212 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 291 (524)
..+++|+.|++++|.+.... .+..+ ++|++|++++|.+.+ .+.+.... +|++|++++|.+++..+..+..+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~----~l~~l-~~L~~L~l~~n~l~~---~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ----GIQYL-PNVRYLALGGNKLHD---ISALKELT-NLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT----TGGGC-TTCCEEECTTSCCCC---CGGGTTCT-TCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccccceeeeeeCCCCccccc----ccccC-CCCcEEECCCCCCCC---chhhcCCC-CCCEEECCCCccCccChhHhcCC
Confidence 34445555555555444321 12222 556666666665533 12333333 66667776666665555556667
Q ss_pred cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSS 370 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~ 370 (524)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++.++. +..+++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT------NLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc------cCCEEECCCCCcCccCHHHhcCCcc
Confidence 7777777777777766666667777777777777777766655555544 677777777777766555 566777
Q ss_pred CcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
|++|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 77777777777766666667777777777777777776664
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=194.72 Aligned_cols=204 Identities=22% Similarity=0.161 Sum_probs=151.1
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.+.+++++++++++++.++. +|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+..++. ...++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCT
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCC
Confidence 36778889999999999886 565553 689999999999988888889999999999999999886554 37888
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcccc
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 269 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 269 (524)
+|++|++++|.++..+. .+..+++|++|++++|.+++..+. .+..+ ++|++|++++|++. .+++..+...++
T Consensus 78 ~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~--~~~~l-~~L~~L~L~~N~l~--~~~~~~~~~l~~ 149 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLG--ALRGL-GELQELYLKGNELK--TLPPGLLTPTPK 149 (290)
T ss_dssp TCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSS--TTTTC-TTCCEEECTTSCCC--CCCTTTTTTCTT
T ss_pred cCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHH--HHcCC-CCCCEEECCCCCCC--ccChhhcccccC
Confidence 89999999998886653 567778888888888888776653 23333 77777777777773 445555444447
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 777777777777555555666777777777777776 55666666667777777777665
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-24 Score=212.41 Aligned_cols=267 Identities=18% Similarity=0.176 Sum_probs=166.0
Q ss_pred CCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCC--CCCCEEEccCCCCCCCCCccccCCCCCCCEEE
Q 009835 69 DCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKL--HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLN 146 (524)
Q Consensus 69 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~ 146 (524)
-|..|.++.|+ ...++.++++++ .+. +..+..+ +++++|++++|.+.+. .+. +..+++|++|+
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~--------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~ 99 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGK--------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMD 99 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTC--------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEE
T ss_pred HHHHHHHHhcC--chhheeeccccc--------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEE
Confidence 45569998875 345778999885 444 4556666 8999999999999885 444 56799999999
Q ss_pred ccCCCCCcc-CCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCC-CCCCCCCchHhhhcccCCCEEEeeC
Q 009835 147 LSCGTSLLK-VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 147 L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
+++|.+.+. +|..+..+++|++|++++|.+... .+..+..+++|++|++++| .+++.. ++..+..+++|++|++++
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~-l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCC
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHH-HHHHHhcCCCCCEEcCCC
Confidence 999988765 777888999999999999987632 2355777888888888888 455321 234567777788888877
Q ss_pred C-CCCCCCCCchhhhcccC-cccEEEccCC--CCCCCCCCchhhhccccccEEEeeccc-cccccchhhhcccccceEee
Q 009835 225 C-ALPPINPSSIWHFNLST-SIETLDLSDN--NLPSSSVYPWLFNLSRNIQYLNLGFNS-LQGSIPEAFQLMVSLRFLYL 299 (524)
Q Consensus 225 n-~l~~~~~~~~~~~~~~~-~L~~L~L~~n--~l~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 299 (524)
| .+++.... ..+..+ + +|++|++++| .+++..++..+.. .++|++|++++|. +++..+..+..+++|++|++
T Consensus 178 ~~~l~~~~~~-~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 178 CFDFTEKHVQ-VAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CTTCCHHHHH-HHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCcChHHHH-HHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 7 66542110 022233 5 6777777766 3332122222222 3366666666666 55455555666666666666
Q ss_pred cCcc-cccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC
Q 009835 300 TSNE-LEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 300 s~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
++|. +.......+.++++|++|++++| ++......+.. +++.|++++|.+++..|.
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--------~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--------ALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--------HSTTSEESCCCSCCTTCS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--------hCcceEEecccCccccCC
Confidence 6663 22222224555666666666666 43322222221 244444555555554443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=195.38 Aligned_cols=206 Identities=23% Similarity=0.196 Sum_probs=177.1
Q ss_pred cCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhh
Q 009835 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLF 264 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 264 (524)
+.+++++++++++++.++..+. .+ .++++.|++++|.+.+..+. .+..+ ++|++|++++|.+++ ++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~---~~--~~~l~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~L~~n~l~~--~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP---DL--PKDTTILHLSENLLYTFSLA--TLMPY-TRLTQLNLDRAELTK--LQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS---CC--CTTCCEEECTTSCCSEEEGG--GGTTC-TTCCEEECTTSCCCE--EECC--
T ss_pred ccccCCccEEECCCCCCCcCCC---CC--CCCCCEEEcCCCcCCccCHH--HhhcC-CCCCEEECCCCccCc--ccCC--
Confidence 6788999999999999998863 22 26899999999999887663 34444 999999999999944 3332
Q ss_pred hccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCC
Q 009835 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344 (524)
Q Consensus 265 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 344 (524)
...++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..++
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---- 148 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP---- 148 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc----
Confidence 34459999999999998 6788888999999999999999988788899999999999999999988877777655
Q ss_pred CCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 345 MNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 345 ~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+|+.|+|++|++++.++. +..+++|+.|+|++|+++ .+|..+..+++|+.+++++|++.+.+.
T Consensus 149 --~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 149 --KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp --TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred --CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 999999999999987776 788999999999999999 778888888999999999999998764
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-24 Score=213.51 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCCCcEEEccCCcCcc----ccchhh-hcCCCCCEEECcCCcCeeeC
Q 009835 368 FSSLKILVLGENRLNG----TIDKSL-SQLLKLESLSLGRNSFTGKI 409 (524)
Q Consensus 368 l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~l~~N~l~~~~ 409 (524)
+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5666666666666665 355555 45677777777777766544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-23 Score=224.84 Aligned_cols=307 Identities=13% Similarity=0.070 Sum_probs=197.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceee----cCccccCCCCCCEEEccCCCCCCC---CCccccCCCCCCCEEEccCCCCCcc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGT----ISPALLKLHDLRHLDLSNNHFGGS---PLPEFIGSLSRLRYLNLSCGTSLLK 155 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~~~~~ 155 (524)
.+++.|+|+++ .+++. ++..+..+++|++|++++|.+++. .++..+.++++|++|++++|.+.+
T Consensus 164 ~~L~~L~L~~~--------~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~- 234 (592)
T 3ogk_B 164 RKIKTLLMEES--------SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE- 234 (592)
T ss_dssp TTCSEEECTTC--------EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-
T ss_pred CCCCEEECccc--------cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-
Confidence 46888888885 44443 334455678888888888877632 144455677888888888777654
Q ss_pred CCccccCCCCCcEEEccCCCCC-------------------------CCCCchhcCCCCCCcEEEccCCCCCCCCCchHh
Q 009835 156 VPRPFQYLSGLVYLHLENSNLF-------------------------SLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQV 210 (524)
Q Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 210 (524)
+|..+.++++|++|+++..... ....+..+..+++|++|++++|.++... ....
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~-~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-HCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH-HHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH-HHHH
Confidence 4455666666666666532211 0111233445666677777666643321 1233
Q ss_pred hhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccC-----------CCCCCCCCCchhhhccccccEEEeeccc
Q 009835 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSD-----------NNLPSSSVYPWLFNLSRNIQYLNLGFNS 279 (524)
Q Consensus 211 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 279 (524)
+..+++|++|++++ .+..... ..+...+++|++|++++ +.+++ .....+....++|++|+++.|.
T Consensus 314 ~~~~~~L~~L~L~~-~~~~~~l--~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 314 IQKCPNLEVLETRN-VIGDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HTTCTTCCEEEEEG-GGHHHHH--HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESC
T ss_pred HHhCcCCCEEeccC-ccCHHHH--HHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCC
Confidence 56667777777762 2221111 02223347888888883 44433 2223334445688899888888
Q ss_pred cccccchhhhc-ccccceEeec----Ccccccc-----cchhhcCCCCCCEEEccCCC--CCCchhHHHHhccCCCCCCC
Q 009835 280 LQGSIPEAFQL-MVSLRFLYLT----SNELEGG-----IPKFFGKMCSLNRLCLPYNK--LSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 280 l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~~~~~~~ 347 (524)
+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|++|++++|. +++.....+.. .+++
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~-----~~~~ 464 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ-----YSPN 464 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH-----SCTT
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH-----hCcc
Confidence 88776666665 8889999886 5666653 34446678899999997543 66666666654 1348
Q ss_pred ccEEEcCCCCCccCC-CC-CCCCCCCcEEEccCCcCccc-cchhhhcCCCCCEEECcCCcCeee
Q 009835 348 LEGVCLEGNDITGPL-PD-LGGFSSLKILVLGENRLNGT-IDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
|++|++++|.+++.. +. +.++++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999999999987632 33 57789999999999998755 344556789999999999997743
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-23 Score=209.33 Aligned_cols=263 Identities=19% Similarity=0.186 Sum_probs=146.7
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCC---CCccCCccc-------cCCCCCcEEEcc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGT---SLLKVPRPF-------QYLSGLVYLHLE 172 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~---~~~~~p~~~-------~~l~~L~~L~L~ 172 (524)
.++..+..+++|++|+|++|.++... ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 35556666777777777777766531 12335567777777777643 333444433 455556666665
Q ss_pred CCCCCCCC---CchhcCCCCCCcEEEccCCCCCCCC--CchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEE
Q 009835 173 NSNLFSLG---SLQWLSHLSSLRHLDLSYINLTKSS--DWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247 (524)
Q Consensus 173 ~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 247 (524)
+|.+.... .+..+..+++|++|+|++|.++... .+...+..+. .+ ......++|++|
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~~----------~~~~~~~~L~~L 164 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------VN----------KKAKNAPPLRSI 164 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------HH----------HHHHTCCCCCEE
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------hh----------hhcccCCCCcEE
Confidence 55555321 1123344445555555554443221 0011111120 00 000000466666
Q ss_pred EccCCCCCCCCCCc--hhhhccccccEEEeecccccc-----ccchhhhcccccceEeecCcccc----cccchhhcCCC
Q 009835 248 DLSDNNLPSSSVYP--WLFNLSRNIQYLNLGFNSLQG-----SIPEAFQLMVSLRFLYLTSNELE----GGIPKFFGKMC 316 (524)
Q Consensus 248 ~L~~n~l~~~~~~~--~~~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~ 316 (524)
++++|.+....++. ..+...++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 66666664212221 112223377777777777762 23336667788888888888875 45677777888
Q ss_pred CCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCcc----CCCC-C-CCCCCCcEEEccCCcCccccc
Q 009835 317 SLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG----PLPD-L-GGFSSLKILVLGENRLNGTID 386 (524)
Q Consensus 317 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~----~~~~-~-~~l~~L~~L~Ls~N~l~~~~p 386 (524)
+|++|+|++|.+++.....+...-....+++|+.|+|++|.+++ .++. + .++++|+.|++++|.+++..+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88888888888876633322221000113478888888888887 2443 4 567899999999999987764
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-22 Score=187.77 Aligned_cols=211 Identities=23% Similarity=0.269 Sum_probs=156.2
Q ss_pred CCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccc
Q 009835 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLR 295 (524)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 295 (524)
..++++++++.+...+.. + .+.+++|++++|.+.+ +++..+...++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~---~---~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG---I---PADTEKLDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSCCSC---C---CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCccccCCC---C---CCCCCEEEccCCCcCc--cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 455666666666554432 1 2678888888888844 3333333344899999999988887777788899999
Q ss_pred eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEE
Q 009835 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKIL 374 (524)
Q Consensus 296 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L 374 (524)
+|++++|.+++..+..|..+++|++|++++|.+++..+..|..++ +|++|+|++|++++.++. +..+++|++|
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC------cccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 999999999977778888999999999999999987777776655 899999999999988875 8899999999
Q ss_pred EccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccc-c-----ccccccCCCCCCCCCCCCCCCCC
Q 009835 375 VLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQS-F-----NASVYAGNPELCGLPLPNKCPDE 441 (524)
Q Consensus 375 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~-----~~~~~~gn~~~C~~~~~~~c~~~ 441 (524)
+|++|++++..+..+..+++|+.|++++|++.+.......+.. + ......|+. .|+.+....|..+
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 9999999988888899999999999999999987443221111 1 111223433 5666666777654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-23 Score=206.03 Aligned_cols=252 Identities=19% Similarity=0.182 Sum_probs=144.2
Q ss_pred CCEEEccCCCCCCCCCccccCCC--CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 117 LRHLDLSNNHFGGSPLPEFIGSL--SRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 117 L~~L~Ls~n~l~~~~~p~~l~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.....+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 667777776654 3444555 6677777777766655544 44566666666666665422222345555666666
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCC-CCCCCCCCchhhhccccccEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDN-NLPSSSVYPWLFNLSRNIQYL 273 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L 273 (524)
++++|.+++.. +..+..+ ++|++|++++| .+++ ...+......++|++|
T Consensus 124 ~L~~~~l~~~~--~~~l~~~---------------------------~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 124 SLEGLRLSDPI--VNTLAKN---------------------------SNLVRLNLSGCSGFSE-FALQTLLSSCSRLDEL 173 (336)
T ss_dssp ECTTCBCCHHH--HHHHTTC---------------------------TTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEE
T ss_pred eCcCcccCHHH--HHHHhcC---------------------------CCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEE
Confidence 66655544321 2334444 45555555555 3322 1112222223366666
Q ss_pred Eeecc-ccccc-cchhhhccc-ccceEeecCc--ccc-cccchhhcCCCCCCEEEccCCC-CCCchhHHHHhccCCCCCC
Q 009835 274 NLGFN-SLQGS-IPEAFQLMV-SLRFLYLTSN--ELE-GGIPKFFGKMCSLNRLCLPYNK-LSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 274 ~Ls~n-~l~~~-~~~~~~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~~~~~~ 346 (524)
++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..++
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~------ 247 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN------ 247 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT------
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC------
Confidence 66666 66543 455566666 7777777776 333 3455556667777777777776 5555555555544
Q ss_pred CccEEEcCCCC-CccCC-CCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC
Q 009835 347 SLEGVCLEGND-ITGPL-PDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412 (524)
Q Consensus 347 ~L~~L~Ls~n~-l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 412 (524)
+|++|++++|. +.... ..+.++++|+.|++++| ++...-..+. .+++.|++++|++++..|..
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 77777777774 22211 12667888888888888 4433222232 23566678899999888754
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=184.69 Aligned_cols=196 Identities=20% Similarity=0.212 Sum_probs=141.7
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCC-CCccCCccccCCCCCcEEEccC-CCCCCCCCchhcCCCCCCcE
Q 009835 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGT-SLLKVPRPFQYLSGLVYLHLEN-SNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~ 193 (524)
+|++|++++|.+++. .+..|..+++|++|++++|. +.+..+..|.++++|++|++++ |.++.++. ..|.++++|++
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCE
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCE
Confidence 899999999999885 55688999999999999997 7777777899999999999998 88886553 56788899999
Q ss_pred EEccCCCCCCCCCchHhhhcccCCC---EEEeeCC-CCCCCCCCchhhhcccCccc-EEEccCCCCCCCCCCchhhhccc
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLK---TLVLHSC-ALPPINPSSIWHFNLSTSIE-TLDLSDNNLPSSSVYPWLFNLSR 268 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~ 268 (524)
|++++|.+++.+. +..+++|+ +|++++| .+.+..+. .+..+ ++|+ +|++++|++ ..++...+.. +
T Consensus 110 L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~--~~~~l-~~L~~~L~l~~n~l--~~i~~~~~~~-~ 179 (239)
T 2xwt_C 110 LGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN--AFQGL-CNETLTLKLYNNGF--TSVQGYAFNG-T 179 (239)
T ss_dssp EEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT--TTTTT-BSSEEEEECCSCCC--CEECTTTTTT-C
T ss_pred EeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcc--cccch-hcceeEEEcCCCCC--cccCHhhcCC-C
Confidence 9999998887653 55666666 8888888 77665552 22333 7777 777777777 3455555555 3
Q ss_pred cccEEEeeccc-cccccchhhhcc-cccceEeecCcccccccchhhcCCCCCCEEEccCC
Q 009835 269 NIQYLNLGFNS-LQGSIPEAFQLM-VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 269 ~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
+|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 67777777773 665445556666 677777777777663 3322 4556666666654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=190.37 Aligned_cols=193 Identities=21% Similarity=0.274 Sum_probs=98.4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+...+ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS---AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch---hhcCCCC
Confidence 3346667777777776665 33 45666777777777666665433 666666777777766666432 3566666
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccc
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 270 (524)
|++|++++|.+++.+ .+..+++|++|++++|.+.+..+ +..+ ++|++|++++|.+.+ +++ +... ++|
T Consensus 109 L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~----l~~l-~~L~~L~l~~n~l~~--~~~-l~~l-~~L 175 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP----LAGL-TNLQYLSIGNAQVSD--LTP-LANL-SKL 175 (308)
T ss_dssp CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG----GGGC-TTCCEEECCSSCCCC--CGG-GTTC-TTC
T ss_pred CCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc----ccCC-CCccEEEccCCcCCC--Chh-hcCC-CCC
Confidence 666666666665542 25555555555555555544322 1222 455555555554422 121 2222 244
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCC
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 444444444443221 3344444444444444442221 33444444444444433
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=197.80 Aligned_cols=231 Identities=20% Similarity=0.151 Sum_probs=176.4
Q ss_pred CCCCCCEEEccCCCCCCCCCccc--cCCCCCCCEEEccCCCCCccCCccc--cCCCCCcEEEccCCCCCCCCC---chhc
Q 009835 113 KLHDLRHLDLSNNHFGGSPLPEF--IGSLSRLRYLNLSCGTSLLKVPRPF--QYLSGLVYLHLENSNLFSLGS---LQWL 185 (524)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~~p~~--l~~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~ 185 (524)
+...++.|++.++.++...+... +..+++|++|++++|.+.+..|..+ .++++|++|++++|.+..... ...+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34568889998887754312211 1235679999999999999999888 899999999999999885322 1234
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCC---CCCchhhhcccCcccEEEccCCCCCCCCCCch
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI---NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 262 (524)
..+++|++|++++|.+...+ +..+..+++|++|++++|.+.+. .+. .....+ ++|++|++++|+++ .++..
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l-~~L~~L~Ls~N~l~--~l~~~ 215 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFS--CEQVRAFPALTSLDLSDNPGLGERGLMAA-LCPHKF-PAIQNLALRNTGME--TPTGV 215 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCC--TTSCCCCTTCCEEECCSCTTCHHHHHHTT-SCTTSS-CCCCSCBCCSSCCC--CHHHH
T ss_pred hhccCCCEEEeeCCCcchhh--HHHhccCCCCCEEECCCCCCccchhhhHH-HhhhcC-CCCCEEECCCCCCC--chHHH
Confidence 57899999999999998775 36788999999999999987642 111 112234 89999999999994 33332
Q ss_pred ---hhhccccccEEEeeccccccccchhhhcc---cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHH
Q 009835 263 ---LFNLSRNIQYLNLGFNSLQGSIPEAFQLM---VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMI 336 (524)
Q Consensus 263 ---~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 336 (524)
++...++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++... +
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~--~ 290 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ--P 290 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC--T
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch--h
Confidence 33444599999999999998878777666 69999999999999 6677664 799999999999987521 3
Q ss_pred HhccCCCCCCCccEEEcCCCCCcc
Q 009835 337 QNLSGGCTMNSLEGVCLEGNDITG 360 (524)
Q Consensus 337 ~~l~~~~~~~~L~~L~Ls~n~l~~ 360 (524)
.. +++|+.|++++|+++.
T Consensus 291 ~~------l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DE------LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TS------CCCCSCEECSSTTTSC
T ss_pred hh------CCCccEEECcCCCCCC
Confidence 33 4599999999999875
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=181.53 Aligned_cols=192 Identities=27% Similarity=0.302 Sum_probs=143.2
Q ss_pred CCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEcc
Q 009835 69 DCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS 148 (524)
Q Consensus 69 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~ 148 (524)
+||.|.|++|.. ..+.++++++ .++ .+|..+. +++++|+|++|.+++. .+..+.++++|++|+|+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~--------~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGK--------SLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLD 67 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTC--------CCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred cCCCCCceEcCC---CCeEEecCCC--------Ccc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECC
Confidence 588999999953 3446888885 444 4565554 5899999999999986 77789999999999999
Q ss_pred CCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCC
Q 009835 149 CGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228 (524)
Q Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 228 (524)
+|.+.+..+..|.++++|++|++++|.+..++. ..+..+++|++|++++|.++..+. ..+..+++|++|++++|.+.
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCC
Confidence 999999888889999999999999999986654 567888899999999998887752 45677788888888888777
Q ss_pred CCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccc
Q 009835 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS 283 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 283 (524)
+..+. .+... ++|++|++++|.+. .+++..+...++|+.|++++|.+++.
T Consensus 145 ~~~~~--~~~~l-~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAG--AFDKL-TNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTT--TTTTC-TTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHH--HcCcC-cCCCEEECCCCcCC--ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66653 22333 67777777777773 33433333334677777777766543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=189.12 Aligned_cols=194 Identities=23% Similarity=0.285 Sum_probs=105.5
Q ss_pred ccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhc
Q 009835 160 FQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFN 239 (524)
Q Consensus 160 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 239 (524)
+..+++|++|++++|.+..++ .+..+++|++|++++|.+++.+ .+..+++|++|++++|.+.+.. .+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLA----PLKNLTKITELELSGNPLKNVS----AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----GGTTCCSCCEEECCSCCCSCCG----GGTT
T ss_pred HHHcCCcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCCh----hHccCCCCCEEEccCCcCCCch----hhcC
Confidence 345677777777777776554 2666777777777777776653 1666667777777776665531 2223
Q ss_pred ccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCC
Q 009835 240 LSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLN 319 (524)
Q Consensus 240 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 319 (524)
+ ++|++|++++|.+.+ ++ .+... ++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 106 l-~~L~~L~l~~n~l~~--~~-~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 106 L-QSIKTLDLTSTQITD--VT-PLAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp C-TTCCEEECTTSCCCC--CG-GGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred C-CCCCEEECCCCCCCC--ch-hhcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 3 566666666666532 22 22222 255555555555553322 4455555555555555543222 44455555
Q ss_pred EEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEE
Q 009835 320 RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399 (524)
Q Consensus 320 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 399 (524)
+|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 177 ~L~l~~n~l~~~~~-------------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 223 (308)
T 1h6u_A 177 TLKADDNKISDISP-------------------------------LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223 (308)
T ss_dssp EEECCSSCCCCCGG-------------------------------GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred EEECCCCccCcChh-------------------------------hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence 55555555443332 4445555555555555553332 45555555555
Q ss_pred CcCCcCe
Q 009835 400 LGRNSFT 406 (524)
Q Consensus 400 l~~N~l~ 406 (524)
+++|+++
T Consensus 224 l~~N~i~ 230 (308)
T 1h6u_A 224 LTNQTIT 230 (308)
T ss_dssp EEEEEEE
T ss_pred ccCCeee
Confidence 5555554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-23 Score=221.56 Aligned_cols=325 Identities=12% Similarity=0.107 Sum_probs=198.9
Q ss_pred cEEEEEcCCCCCCCCCCCccee-ecCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCCCC----cc
Q 009835 84 HVKVLNLRRSDDENSRGTVLKG-TISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGTSL----LK 155 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~~~----~~ 155 (524)
++++|+|+++. .+.. .++.....+++|++|+|++|.+++.. ++..+..+++|++|++++|.+. +.
T Consensus 139 ~L~~L~L~~~~-------~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 139 DLETLKLDKCS-------GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp GCCEEEEESCE-------EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred cCcEEECcCCC-------CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 49999998861 1221 23333458999999999999987653 3345667899999999999987 34
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCC-CCC-----------------------CchHhh
Q 009835 156 VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLT-KSS-----------------------DWFQVV 211 (524)
Q Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-----------------------~~~~~l 211 (524)
++..+.++++|++|++++|.+..++ ..+..+++|++|+++..... ... .++..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGGGH--HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHHHH--HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH
Confidence 4555678999999999999887533 56777888888888743211 101 112334
Q ss_pred hcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec-----------ccc
Q 009835 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF-----------NSL 280 (524)
Q Consensus 212 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-----------n~l 280 (524)
..+++|++|++++|.+.+.... .....+++|++|+++ +.+.. ...+.+....++|++|++++ |.+
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~--~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHC--TLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHH--HHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred hhcCCCcEEecCCCcCCHHHHH--HHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 4455555555555553322110 112222555555555 22222 12222333334666676662 444
Q ss_pred ccc-cchhhhcccccceEeecCcccccccchhhcC-CCCCCEEEcc----CCCCCCc-----hhHHHHhccCCCCCCCcc
Q 009835 281 QGS-IPEAFQLMVSLRFLYLTSNELEGGIPKFFGK-MCSLNRLCLP----YNKLSGD-----LSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 281 ~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~~~~~~~L~ 349 (524)
++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++..+..++ +|+
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~------~L~ 439 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK------KLR 439 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT------TCC
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC------CCC
Confidence 433 2222344667777777666666655555554 6777777775 5566653 333344443 788
Q ss_pred EEEcCCCC--CccCCCC--CCCCCCCcEEEccCCcCccc-cchhhhcCCCCCEEECcCCcCeeeC-CCC-Cccccccccc
Q 009835 350 GVCLEGND--ITGPLPD--LGGFSSLKILVLGENRLNGT-IDKSLSQLLKLESLSLGRNSFTGKI-PLG-TQLQSFNASV 422 (524)
Q Consensus 350 ~L~Ls~n~--l~~~~~~--~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~-p~~-~~~~~~~~~~ 422 (524)
+|++++|. +++.... ...+++|++|++++|.+++. ++..+.++++|++|++++|++++.. +.. ..+..+....
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 88886543 4443322 23478899999999998863 4556678899999999999986432 211 2345666667
Q ss_pred ccCCC
Q 009835 423 YAGNP 427 (524)
Q Consensus 423 ~~gn~ 427 (524)
+.+|.
T Consensus 520 ls~n~ 524 (592)
T 3ogk_B 520 VQGYR 524 (592)
T ss_dssp EESCB
T ss_pred CcCCc
Confidence 77777
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-22 Score=195.55 Aligned_cols=232 Identities=20% Similarity=0.224 Sum_probs=176.4
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeec-C--ccccCCCCCCEEEccCCCCCCCCCcccc--CCCCCCCEEEccCCCCCccCC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTI-S--PALLKLHDLRHLDLSNNHFGGSPLPEFI--GSLSRLRYLNLSCGTSLLKVP 157 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~-~--~~l~~l~~L~~L~Ls~n~l~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p 157 (524)
.+++.+++.+. .+.... . ..+..+++|++|++++|.+.+. .|..+ ..+++|++|+|++|.+.+..+
T Consensus 64 ~~l~~l~l~~~--------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 134 (310)
T 4glp_A 64 LRVRRLTVGAA--------QVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRS 134 (310)
T ss_dssp CCCCEEEECSC--------CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTS
T ss_pred cceeEEEEeCC--------cCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhh
Confidence 35677888775 232211 1 1123456799999999999987 77777 899999999999999987665
Q ss_pred ----ccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc--hHhhhcccCCCEEEeeCCCCCCCC
Q 009835 158 ----RPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW--FQVVAKLRSLKTLVLHSCALPPIN 231 (524)
Q Consensus 158 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~ 231 (524)
..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+.+.... ...+..+++|++|++++|.++...
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hhHHHHhhhccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 345679999999999999986554 6688999999999999987653111 123468899999999999986443
Q ss_pred CCchhhhcccCcccEEEccCCCCCCCCCCchhhhcc--ccccEEEeeccccccccchhhhcccccceEeecCcccccccc
Q 009835 232 PSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS--RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP 309 (524)
Q Consensus 232 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 309 (524)
.....++..+++|++|++++|.+.+ ..|+.+.... ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 3211233444999999999999966 4465555542 59999999999999 6677664 7999999999999964 4
Q ss_pred hhhcCCCCCCEEEccCCCCCC
Q 009835 310 KFFGKMCSLNRLCLPYNKLSG 330 (524)
Q Consensus 310 ~~l~~l~~L~~L~Ls~n~l~~ 330 (524)
. +..+++|+.|++++|++++
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 6788999999999999875
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=191.05 Aligned_cols=230 Identities=17% Similarity=0.093 Sum_probs=117.0
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCC-ccccCCCCCcE-EEccCCCCCCCCCch
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY-LHLENSNLFSLGSLQ 183 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~~~~ 183 (524)
.+|..+ .+++++|+|++|+|+.. .+.+|.++++|++|+|++|.+.+.+| ..|.++++|++ +.++.|++..++. .
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~ 98 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-E 98 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-T
T ss_pred ccCcCc--CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc-h
Confidence 455544 24677777777777653 33456777777777777777655444 34666666554 4445566664433 4
Q ss_pred hcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCC-CCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCch
Q 009835 184 WLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC-ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262 (524)
Q Consensus 184 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 262 (524)
.|..+++|++|++++|.+...+. ..+....++..|++.++ .+....+. .+.
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~--~f~------------------------ 150 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERN--SFV------------------------ 150 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTT--SST------------------------
T ss_pred hhhhccccccccccccccccCCc--hhhcccchhhhhhhcccccccccccc--chh------------------------
Confidence 45666666666666666655542 22333344445555432 22222221 111
Q ss_pred hhhccccccEEEeeccccccccchhhhcccccceEeecC-cccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC
Q 009835 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTS-NELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341 (524)
Q Consensus 263 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 341 (524)
.....++.|++++|+++. ++.......+|+.|++++ |.++...+..|..+++|++|++++|+++...+..+
T Consensus 151 --~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~----- 222 (350)
T 4ay9_X 151 --GLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL----- 222 (350)
T ss_dssp --TSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC-----
T ss_pred --hcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh-----
Confidence 122235555555555552 222222334555555543 33332223345555555555555555554333222
Q ss_pred CCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCC
Q 009835 342 GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGEN 379 (524)
Q Consensus 342 ~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N 379 (524)
.+|+.|.+.++.-....|.+..+++|+.+++.++
T Consensus 223 ----~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 ----ENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp ----TTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ----ccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 1445555444433334555666666776666543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=179.68 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=166.0
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCC-CCCCCCccccCCCCCCCEEEccC-CCCCccCCccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNH-FGGSPLPEFIGSLSRLRYLNLSC-GTSLLKVPRPF 160 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~~ 160 (524)
..++.|+++++ .+++..+..+..+++|++|++++|. ++.. .+..|.++++|++|++++ |.+.+..+..|
T Consensus 31 ~~l~~L~l~~n--------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIET--------HLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESC--------CCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCC--------cceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 47899999985 7887777789999999999999997 8875 556899999999999998 99998888899
Q ss_pred cCCCCCcEEEccCCCCCCCCCchhcCCCCCCc---EEEccCC-CCCCCCCchHhhhcccCCC-EEEeeCCCCCCCCCCch
Q 009835 161 QYLSGLVYLHLENSNLFSLGSLQWLSHLSSLR---HLDLSYI-NLTKSSDWFQVVAKLRSLK-TLVLHSCALPPINPSSI 235 (524)
Q Consensus 161 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~ 235 (524)
.++++|++|++++|.+..++. +..+++|+ +|++++| .++..+ ...+..+++|+ +|++++|.+....+
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~~i~~--- 173 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFTSVQG--- 173 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCCEECT---
T ss_pred CCCCCCCEEeCCCCCCccccc---cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCcccCH---
Confidence 999999999999999997664 77788887 9999999 888775 35688999999 99999999985544
Q ss_pred hhhcccCcccEEEccCCC-CCCCCCCchhhhcc-ccccEEEeeccccccccchhhhcccccceEeecCcc
Q 009835 236 WHFNLSTSIETLDLSDNN-LPSSSVYPWLFNLS-RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNE 303 (524)
Q Consensus 236 ~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 303 (524)
..+.. ++|++|++++|+ + ..+++..+... ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l--~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYL--TVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTC--CEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred hhcCC-CCCCEEEcCCCCCc--ccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 45555 799999999995 8 35666555555 699999999999985 4443 67889999998763
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-23 Score=221.96 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCcccc-CCCCCCEEEccCC-CCCCCCCccccCCCCCCCEEEccCCCCCccCCccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALL-KLHDLRHLDLSNN-HFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPF 160 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~ 160 (524)
.+++.|+|+++ .+++..+..+. .+++|++|+|++| .++...++..+.++++|++|+|++|.+++..+..+
T Consensus 105 ~~L~~L~L~~~--------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 105 TWLEEIRLKRM--------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp TTCCEEEEESC--------BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred CCCCeEEeeCc--------EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 46777777774 44444444444 4666777777666 34332233444456667777776666544333322
Q ss_pred ----cCCCCCcEEEccCCCCCCCCC---chhcCCCCCCcEEEccCC
Q 009835 161 ----QYLSGLVYLHLENSNLFSLGS---LQWLSHLSSLRHLDLSYI 199 (524)
Q Consensus 161 ----~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n 199 (524)
..+++|++|++++|. ..+.. ...+..+++|++|++++|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 245566666666664 11111 011233566666666655
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=197.94 Aligned_cols=205 Identities=20% Similarity=0.222 Sum_probs=138.3
Q ss_pred CCCCC-----cccce-EeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCC
Q 009835 67 KRDCC-----KWRGV-RCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLS 140 (524)
Q Consensus 67 ~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~ 140 (524)
+.++| .|.++ .|.. .+++.|+|+++ .+++ +|..+. ++|++|+|++|.++. +| ..++
T Consensus 39 ~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n--------~L~~-lp~~l~--~~L~~L~Ls~N~l~~--ip---~~l~ 100 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECLI--NQFSELQLNRL--------NLSS-LPDNLP--PQITVLEITQNALIS--LP---ELPA 100 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS--------CCSC-CCSCCC--TTCSEEECCSSCCSC--CC---CCCT
T ss_pred cCCccccccchhhhcccccc--CCccEEEeCCC--------CCCc-cCHhHc--CCCCEEECcCCCCcc--cc---cccC
Confidence 45566 69998 6742 47889999885 6665 776663 789999999999985 66 4578
Q ss_pred CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEE
Q 009835 141 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220 (524)
Q Consensus 141 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 220 (524)
+|++|+|++|.+++ +|. +.+ +|++|++++|.++.++. .+++|++|++++|.+++.+. .+++|++|
T Consensus 101 ~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L 165 (571)
T 3cvr_A 101 SLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE------LPTSLEVL 165 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC------CCTTCCEE
T ss_pred CCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC-----cCccccEEeCCCCccCcCCC------cCCCcCEE
Confidence 89999999888887 565 555 88888888888876543 56777777777777766542 34455555
Q ss_pred EeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhc-----ccccc
Q 009835 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL-----MVSLR 295 (524)
Q Consensus 221 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~ 295 (524)
++++|.+++ ++. +. ++|+.|++++|.++ .+|. +.. .+.|+
T Consensus 166 ~Ls~N~L~~-----------------------------lp~-l~---~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~ 210 (571)
T 3cvr_A 166 SVRNNQLTF-----------------------------LPE-LP---ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEI 210 (571)
T ss_dssp ECCSSCCSC-----------------------------CCC-CC---TTCCEEECCSSCCS-SCCC-CC--------CCE
T ss_pred ECCCCCCCC-----------------------------cch-hh---CCCCEEECcCCCCC-chhh-HHHhhhcccccce
Confidence 555555544 222 11 24555555555554 3333 322 12237
Q ss_pred eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhcc
Q 009835 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLS 340 (524)
Q Consensus 296 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 340 (524)
.|+|++|.++ .+|..+..+++|+.|+|++|.+++..|..+..+.
T Consensus 211 ~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred EEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 8888888877 5676677788888888888888888887777654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-20 Score=168.86 Aligned_cols=163 Identities=26% Similarity=0.270 Sum_probs=118.0
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
.++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+..++. ..+..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCE
Confidence 35899999999999875 56678899999999999999987777778899999999999999886554 45778888888
Q ss_pred EEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEE
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYL 273 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 273 (524)
|++++|.++..+. ..+..+++|++|++++|.+.+..+. .+... ++|++|++++|.+.+ .. ++|+.|
T Consensus 105 L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~l-~~L~~L~l~~N~~~~-~~--------~~l~~L 170 (208)
T 2o6s_A 105 LALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDG--VFDRL-TSLQYIWLHDNPWDC-TC--------PGIRYL 170 (208)
T ss_dssp EECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSCCBCC-CT--------TTTHHH
T ss_pred EEcCCCcCcccCH--hHhccCCcCCEEECCCCccceeCHH--HhccC-CCccEEEecCCCeec-CC--------CCHHHH
Confidence 8888888887652 4567777777777777777665552 22223 666677776666533 11 255666
Q ss_pred Eeeccccccccchhhhccc
Q 009835 274 NLGFNSLQGSIPEAFQLMV 292 (524)
Q Consensus 274 ~Ls~n~l~~~~~~~~~~l~ 292 (524)
+++.|+++|.+|..++.++
T Consensus 171 ~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHhCCceeeccCcccc
Confidence 6666666666665555443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=183.84 Aligned_cols=235 Identities=22% Similarity=0.232 Sum_probs=175.1
Q ss_pred CcccceEeCCC---------CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCC
Q 009835 71 CKWRGVRCSNK---------TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSR 141 (524)
Q Consensus 71 c~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~ 141 (524)
|.+..|.|++. ...++.|+|+++ .++...+.+|.++++|++|+|++|.+.+...+..|.++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N--------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT--------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESC--------CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCC--------cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 67888999632 246889999985 7776555689999999999999999876513457899999
Q ss_pred CCE-EEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccC-CCCCCCCCchHhhhcc-cCCC
Q 009835 142 LRY-LNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSY-INLTKSSDWFQVVAKL-RSLK 218 (524)
Q Consensus 142 L~~-L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l~~l-~~L~ 218 (524)
|++ +.+++|++....|..|.++++|++|++++|.+...+. ..+....++..|++.+ +.+...+. ..+..+ ..++
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~l~ 157 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESV 157 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECT--TSSTTSBSSCE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCc-hhhcccchhhhhhhccccccccccc--cchhhcchhhh
Confidence 886 5667799998889999999999999999999987665 3455667788899866 45665542 345555 4688
Q ss_pred EEEeeCCCCCCCCCCchhhhcccCcccEEEccC-CCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceE
Q 009835 219 TLVLHSCALPPINPSSIWHFNLSTSIETLDLSD-NNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFL 297 (524)
Q Consensus 219 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 297 (524)
.|++++|.++...+ ..+.. .+|++|++.+ |.+ ..+++..+...++|++|++++|+++...+..+ .+|+.|
T Consensus 158 ~L~L~~N~i~~i~~---~~f~~-~~L~~l~l~~~n~l--~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L 228 (350)
T 4ay9_X 158 ILWLNKNGIQEIHN---SAFNG-TQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKL 228 (350)
T ss_dssp EEECCSSCCCEECT---TSSTT-EEEEEEECTTCTTC--CCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEE
T ss_pred hhccccccccCCCh---hhccc-cchhHHhhccCCcc--cCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHh
Confidence 99999999987665 44555 7889999975 555 37777776666699999999999985444344 445555
Q ss_pred eecCcccccccchhhcCCCCCCEEEccCC
Q 009835 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 298 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
.+.++.--..+| .+..+++|+.++++++
T Consensus 229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 229 RARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 544443333566 4778888999888765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-22 Score=211.28 Aligned_cols=304 Identities=17% Similarity=0.145 Sum_probs=175.3
Q ss_pred CcEEEEEcCCCCCCCCCCCcceee-cCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCC--CCc-c
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGT-ISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGT--SLL-K 155 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~--~~~-~ 155 (524)
.+++.|+|+++ ..+... ++..+..+++|++|+|++|.+++.. ++.....+++|++|++++|. +.. .
T Consensus 130 ~~L~~L~L~~~-------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 130 KNFKVLVLSSC-------EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp TTCCEEEEESC-------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred CCCcEEeCCCc-------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 47888888875 133322 3344457888888888888776642 22233466788888888775 211 1
Q ss_pred CCccccCCCCCcEEEccCCC-CCCCCCchhcC------------------------------------------------
Q 009835 156 VPRPFQYLSGLVYLHLENSN-LFSLGSLQWLS------------------------------------------------ 186 (524)
Q Consensus 156 ~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~------------------------------------------------ 186 (524)
++..+.++++|++|++++|. +.. .+..+.
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~ 280 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG
T ss_pred HHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh
Confidence 11122446777777777661 110 011111
Q ss_pred ------CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccC---------
Q 009835 187 ------HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSD--------- 251 (524)
Q Consensus 187 ------~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~--------- 251 (524)
.+++|++|++++|.++... +...+..+++|++|++++| +..... ..+...+++|++|++.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~~-~~~~~l--~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLDY-IEDAGL--EVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEGG-GHHHHH--HHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcCc-cCHHHH--HHHHHhCCCCCEEEEecCcccccccC
Confidence 3456666666666643221 1223445666666666665 221100 02222236777777733
Q ss_pred CCCCCCCCCchhhhccccccEEEeeccccccccchhhh-cccccceEeec--C----ccccc-----ccchhhcCCCCCC
Q 009835 252 NNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-LMVSLRFLYLT--S----NELEG-----GIPKFFGKMCSLN 319 (524)
Q Consensus 252 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~-----~~p~~l~~l~~L~ 319 (524)
+.+++ .....+....++|++|.++.|.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+
T Consensus 357 ~~l~~-~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 357 VALTE-QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp SCCCH-HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CCCCH-HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 33322 11222333345788887777777765555554 47788888887 3 44442 1222356677888
Q ss_pred EEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-C-CCCCCCcEEEccCCcCccccch-hhhcCCCCC
Q 009835 320 RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-L-GGFSSLKILVLGENRLNGTIDK-SLSQLLKLE 396 (524)
Q Consensus 320 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~ 396 (524)
+|++++ .+++.....+... +++|+.|++++|.+++.... + ..+++|++|+|++|.+++.... ....+++|+
T Consensus 436 ~L~L~~-~l~~~~~~~l~~~-----~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 436 RLSLSG-LLTDKVFEYIGTY-----AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp EEECCS-SCCHHHHHHHHHH-----CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred EEeecC-cccHHHHHHHHHh-----chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 888876 6666555555541 23788888888887654332 2 5678888888888888654443 344578888
Q ss_pred EEECcCCcCe
Q 009835 397 SLSLGRNSFT 406 (524)
Q Consensus 397 ~L~l~~N~l~ 406 (524)
.|++++|+++
T Consensus 510 ~L~l~~~~~~ 519 (594)
T 2p1m_B 510 SLWMSSCSVS 519 (594)
T ss_dssp EEEEESSCCB
T ss_pred EEeeeCCCCC
Confidence 8888888774
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=172.62 Aligned_cols=158 Identities=24% Similarity=0.288 Sum_probs=138.4
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccc-hhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP-EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
-+++++++|.+ ..+|..+ .+.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 13 ~~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 45888988888 4566544 3467899999999987644 4578999999999999999988888899999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
|++|.+++..+..|..++ +|++|+|++|++++..|. +..+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus 88 Ls~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLE------SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCSSCCCCCCGGGGTTCS------SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCCccCccCHhHhcCCc------CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 999999998888888766 999999999999998776 9999999999999999999889999999999999999
Q ss_pred CCcCeeeCCCC
Q 009835 402 RNSFTGKIPLG 412 (524)
Q Consensus 402 ~N~l~~~~p~~ 412 (524)
+|++.+.++..
T Consensus 162 ~N~l~c~c~l~ 172 (220)
T 2v70_A 162 ANPFNCNCYLA 172 (220)
T ss_dssp SCCEECSGGGH
T ss_pred CcCCcCCCchH
Confidence 99999988754
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-20 Score=171.68 Aligned_cols=157 Identities=25% Similarity=0.312 Sum_probs=138.3
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEc
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 323 (524)
-+.++++++.+ ..+|..+. ++++.|++++|.+++..+..+..+++|+.|+|++|.+++..|..|.++++|++|+|
T Consensus 13 ~~~v~c~~~~l--~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 13 NNIVDCRGKGL--TEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TTEEECTTSCC--SSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CCEEEcCCCCc--CcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 36788888888 45665443 58999999999999777778999999999999999999888999999999999999
Q ss_pred cCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 324 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
++|.++...+..|..++ +|++|+|++|++++..+. +..+++|+.|+|++|++++..+..+..+++|+.|++++
T Consensus 88 s~N~l~~l~~~~f~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLF------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCccCHhHccCCC------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 99999987777777665 999999999999998776 99999999999999999988888899999999999999
Q ss_pred CcCeeeCCC
Q 009835 403 NSFTGKIPL 411 (524)
Q Consensus 403 N~l~~~~p~ 411 (524)
|++.+.++.
T Consensus 162 N~~~c~c~l 170 (220)
T 2v9t_B 162 NPFICDCHL 170 (220)
T ss_dssp SCEECSGGG
T ss_pred CCcCCCCcc
Confidence 999987653
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-19 Score=185.30 Aligned_cols=143 Identities=24% Similarity=0.293 Sum_probs=99.9
Q ss_pred CCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcc
Q 009835 188 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 267 (524)
Q Consensus 188 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 267 (524)
+++|++|++++|.+++++. +.. +|++|++++|.+++... .+++|++|++++|.+++ ++. .+
T Consensus 99 l~~L~~L~Ls~N~l~~ip~----l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~--lp~----~l 159 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE----LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQLTM--LPE----LP 159 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSC--CCC----CC
T ss_pred cCCCCEEEccCCCCCCcch----hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCCccCc--CCC----cC
Confidence 3444455555554444331 222 55666666666555222 22788888888888843 444 34
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCC-------CEEEccCCCCCCchhHHHHhcc
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSL-------NRLCLPYNKLSGDLSEMIQNLS 340 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~ 340 (524)
++|++|++++|.+++ +|. +. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|.|+. +|..+..++
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~ 230 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLD 230 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSC
T ss_pred CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCC
Confidence 599999999999996 666 65 89999999999999 6666 554 77 999999999995 566666565
Q ss_pred CCCCCCCccEEEcCCCCCccCCCC
Q 009835 341 GGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 341 ~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
+|+.|+|++|.+++..|.
T Consensus 231 ------~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 231 ------PTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp ------TTEEEECCSSSCCHHHHH
T ss_pred ------CCCEEEeeCCcCCCcCHH
Confidence 999999999999987764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-19 Score=160.82 Aligned_cols=181 Identities=25% Similarity=0.262 Sum_probs=140.7
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
+.++.+++.++. +|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+..++. ..+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~--~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred CEEEecCCCccC--CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-hhcCCCCCcCEEECC
Confidence 567777777766 55444 4689999999999998877788999999999999999986654 557889999999999
Q ss_pred CCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec
Q 009835 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF 277 (524)
Q Consensus 198 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 277 (524)
+|.++..+ ...+..+++|++|++++|.+.+..+. .+... ++|++|++++|.++ .+++..+...++|++|++++
T Consensus 85 ~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 85 TNQLQSLP--NGVFDKLTQLKELALNTNQLQSLPDG--VFDKL-TQLKDLRLYQNQLK--SVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp SSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCS
T ss_pred CCcCCccC--HhHhcCccCCCEEEcCCCcCcccCHh--HhccC-CcCCEEECCCCccc--eeCHHHhccCCCccEEEecC
Confidence 99998775 24578889999999999988877663 23334 88888898888884 45555444445888888888
Q ss_pred cccccccchhhhcccccceEeecCcccccccchhhcCCCC
Q 009835 278 NSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCS 317 (524)
Q Consensus 278 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 317 (524)
|.+.+. +++|+.|+++.|.++|.+|..++.++.
T Consensus 158 N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 158 NPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 877643 457888888888888888887776654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-19 Score=163.78 Aligned_cols=159 Identities=25% Similarity=0.227 Sum_probs=139.1
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
..-+.++.+++.+ ..+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|.+....+..|..+++|++|
T Consensus 19 Cs~~~v~c~~~~l--~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 19 CSGTTVDCRSKRH--ASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp EETTEEECTTSCC--SSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EeCCEeEccCCCc--CccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 4567789988888 45666443 589999999999998888899999999999999999987666778999999999
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
+|++|.+++..+..|..++ +|++|+|++|+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~------~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLV------HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ECCCCcCCccChhHhCcch------hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 9999999988777777665 9999999999999665568999999999999999997777789999999999999
Q ss_pred CCcCeeeCCC
Q 009835 402 RNSFTGKIPL 411 (524)
Q Consensus 402 ~N~l~~~~p~ 411 (524)
+|++.+.++.
T Consensus 168 ~N~~~c~c~~ 177 (229)
T 3e6j_A 168 GNPWDCECRD 177 (229)
T ss_dssp TSCBCTTBGG
T ss_pred CCCccCCcch
Confidence 9999988764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-18 Score=157.67 Aligned_cols=160 Identities=23% Similarity=0.230 Sum_probs=127.0
Q ss_pred CCCCCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEE
Q 009835 66 DKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYL 145 (524)
Q Consensus 66 ~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L 145 (524)
.+...|.|.+|.|+.. .+ ..+|..+. ++|++|+|++|.+++. .|..|..+++|++|
T Consensus 14 ~~~~~Cs~~~v~c~~~--------------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 69 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSK--------------------RH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKEL 69 (229)
T ss_dssp CTTCEEETTEEECTTS--------------------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCEEeCCEeEccCC--------------------Cc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEE
Confidence 3778899999999631 12 23444443 8899999999999986 78889999999999
Q ss_pred EccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCC
Q 009835 146 NLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 146 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 225 (524)
+|++|.+....+..|.++++|++|+|++|.++.++. ..+..+++|++|++++|.++..+ ..+..+++|++|++++|
T Consensus 70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTELP---RGIERLTHLTHLALDQN 145 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSCC---TTGGGCTTCSEEECCSS
T ss_pred ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccccC---cccccCCCCCEEECCCC
Confidence 999999987777778999999999999999986654 55788999999999999988664 36688888888888888
Q ss_pred CCCCCCCCchhhhcccCcccEEEccCCCCCC
Q 009835 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPS 256 (524)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 256 (524)
.+.+..+. .+..+ ++|++|++++|.+..
T Consensus 146 ~l~~~~~~--~~~~l-~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 146 QLKSIPHG--AFDRL-SSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTT--TTTTC-TTCCEEECTTSCBCT
T ss_pred cCCccCHH--HHhCC-CCCCEEEeeCCCccC
Confidence 88876653 23333 778888888887754
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=166.16 Aligned_cols=171 Identities=25% Similarity=0.299 Sum_probs=96.8
Q ss_pred cCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCC
Q 009835 112 LKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSL 191 (524)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 191 (524)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+..++ .+..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS---SLKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG---GGTTCTTC
T ss_pred hhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh---hhccCCCC
Confidence 456667777777777665 33 36666777777777776665443 666777777777777666432 26666667
Q ss_pred cEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcccccc
Q 009835 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQ 271 (524)
Q Consensus 192 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 271 (524)
++|++++|.++..+ .+..+++|++|++++|.+.+. + .+..+ ++|++|++++|.+.+ +++ +... ++|+
T Consensus 115 ~~L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~-~---~l~~l-~~L~~L~L~~N~l~~--~~~-l~~l-~~L~ 181 (291)
T 1h6t_A 115 KSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI-T---VLSRL-TKLDTLSLEDNQISD--IVP-LAGL-TKLQ 181 (291)
T ss_dssp CEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC-G---GGGGC-TTCSEEECCSSCCCC--CGG-GTTC-TTCC
T ss_pred CEEECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcc-h---hhccC-CCCCEEEccCCcccc--chh-hcCC-CccC
Confidence 77777666666542 455566666666666655544 1 22233 555555555555532 222 2222 2555
Q ss_pred EEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 272 YLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 272 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
.|++++|.+++ ++ .+..+++|+.|++++|.++
T Consensus 182 ~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 182 NLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred EEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 55555555553 22 2445555555555555554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=164.35 Aligned_cols=173 Identities=24% Similarity=0.370 Sum_probs=114.9
Q ss_pred hhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhc
Q 009835 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290 (524)
Q Consensus 211 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 290 (524)
...+++|+.|++++|.+.... .+..+ ++|++|++++|.+.+ +++ +... ++|++|++++|.+++ ++ .+..
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~----~~~~l-~~L~~L~L~~n~l~~--~~~-l~~l-~~L~~L~l~~n~l~~-~~-~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ----GIQYL-PNVTKLFLNGNKLTD--IKP-LANL-KNLGWLFLDENKVKD-LS-SLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT----TGGGC-TTCCEEECCSSCCCC--CGG-GTTC-TTCCEEECCSSCCCC-GG-GGTT
T ss_pred hhhcCcccEEEccCCCcccCh----hHhcC-CCCCEEEccCCccCC--Ccc-cccC-CCCCEEECCCCcCCC-Ch-hhcc
Confidence 345556666666666555442 12223 666666666666633 333 3333 367777777777764 22 3667
Q ss_pred ccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCC
Q 009835 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSS 370 (524)
Q Consensus 291 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~ 370 (524)
+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..++ +|+.|++++|.+++..+ +..+++
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~L~~N~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT------KLDTLSLEDNQISDIVP-LAGLTK 179 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCT------TCSEEECCSSCCCCCGG-GTTCTT
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCC------CCCEEEccCCccccchh-hcCCCc
Confidence 77777777777777743 3567777788888888877765 3444443 78888888888877655 777888
Q ss_pred CcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 88888888888753 3 37788888888888888774
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-19 Score=174.91 Aligned_cols=179 Identities=25% Similarity=0.247 Sum_probs=131.2
Q ss_pred CEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh-ccccccEEEeeccccccccchhhhcccccce
Q 009835 218 KTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN-LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296 (524)
Q Consensus 218 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 296 (524)
+.++++++.+...+. . ....++.|+|++|.++ .+++..+. ..++|+.|++++|++++..+..|..+++|++
T Consensus 21 ~~l~c~~~~l~~iP~---~---~~~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ---S---LPSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCCS---S---CCTTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCccCc---c---CCCCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 345555555554332 1 1155777777777773 34444342 3448888888888888766677888888888
Q ss_pred EeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-C---CCCCCCc
Q 009835 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-L---GGFSSLK 372 (524)
Q Consensus 297 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~---~~l~~L~ 372 (524)
|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..++ +|+.|+|++|++++.++. + ..+++|+
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------QLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc------cCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 88888888877677788888888888888888877777777655 888888888888876655 4 5688999
Q ss_pred EEEccCCcCccccchhhhcCCC--CCEEECcCCcCeeeCC
Q 009835 373 ILVLGENRLNGTIDKSLSQLLK--LESLSLGRNSFTGKIP 410 (524)
Q Consensus 373 ~L~Ls~N~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~p 410 (524)
.|+|++|++++..+..+..++. ++.|++++|++.+.+.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 9999999998776677888876 4889999999987654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=180.79 Aligned_cols=174 Identities=24% Similarity=0.283 Sum_probs=124.8
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+..++ .+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS---SLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT---TSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh---hhccCCC
Confidence 4567788888888888876 33 47778888888888888876554 788888888888888887654 3778888
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccc
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 270 (524)
|++|+|++|.+...+ .+..+++|+.|+|++|.+.+. + .+..+ ++|+.|+|++|.+.+ +++ +..+ ++|
T Consensus 111 L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l-~~L~~L~Ls~N~l~~--~~~-l~~l-~~L 177 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI-T---VLSRL-TKLDTLSLEDNQISD--IVP-LAGL-TKL 177 (605)
T ss_dssp CCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC-G---GGGSC-TTCSEEECCSSCCCC--CGG-GTTC-TTC
T ss_pred CCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc-h---hhccc-CCCCEEECcCCcCCC--chh-hccC-CCC
Confidence 888888888877653 577778888888888877765 2 33334 777777777777743 233 3333 377
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCcccccc
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG 307 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 307 (524)
+.|+|++|.+++. + .+..+++|+.|+|++|.+.+.
T Consensus 178 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 7777777777653 2 466777777777777777643
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=174.28 Aligned_cols=177 Identities=24% Similarity=0.200 Sum_probs=146.6
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh-cccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-LMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
-+.++++++++ ..+|..+ ++.++.|++++|++++..+..+. .+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 20 ~~~l~c~~~~l--~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQL--PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCC--SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCc--CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 46899999999 4566644 34799999999999987777777 899999999999999988888999999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhh---hcCCCCCEE
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSL---SQLLKLESL 398 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L 398 (524)
|++|+++...+..|..++ +|+.|+|++|++++..+. +..+++|+.|+|++|++++..+..+ ..+++|+.|
T Consensus 95 Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQ------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCSSCCCEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCCCcCCcCCHHHhCCCc------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 999999988777787765 999999999999988776 9999999999999999996555555 679999999
Q ss_pred ECcCCcCeeeCCCC-Ccccc--cccccccCCCCCCC
Q 009835 399 SLGRNSFTGKIPLG-TQLQS--FNASVYAGNPELCG 431 (524)
Q Consensus 399 ~l~~N~l~~~~p~~-~~~~~--~~~~~~~gn~~~C~ 431 (524)
+|++|++++..+.. ..+.. +..+.+.+||+.|+
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99999999533221 11222 24568999999996
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-18 Score=152.69 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=108.9
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+. .++ .+.... +|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~-~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAH-NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCT-TCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred CCccEEeccCCCcc--ChH-HHhcCC-CCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 66777777777663 333 333333 77777777776652 2366777888888888888877677778888888888
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
++++|.+++..+..+..++ +|++|++++|...+.++.+..+++|+.|++++|.+++ ++ .+..+++|+.|+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~------~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLP------KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCS------SCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred EecCCccCcHhHHHHhhCC------CCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence 8888888877777777655 7888888888733344567888888999999888885 33 67888889999999
Q ss_pred CCcCee
Q 009835 402 RNSFTG 407 (524)
Q Consensus 402 ~N~l~~ 407 (524)
+|++.+
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 988764
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=157.73 Aligned_cols=153 Identities=25% Similarity=0.315 Sum_probs=135.8
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCcc
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~ 349 (524)
-+.++.+++.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..++ +|+
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~------~L~ 83 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR------SLN 83 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS------SCC
T ss_pred CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc------CCC
Confidence 467899999998 5666553 6899999999999987778999999999999999999998888888766 999
Q ss_pred EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCC
Q 009835 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNP 427 (524)
Q Consensus 350 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~ 427 (524)
+|+|++|.++..++. +..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+..+..+.+.+||
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999999999987776 789999999999999999998999999999999999999999776643 346777888999999
Q ss_pred CCCC
Q 009835 428 ELCG 431 (524)
Q Consensus 428 ~~C~ 431 (524)
+.|+
T Consensus 164 ~~c~ 167 (220)
T 2v9t_B 164 FICD 167 (220)
T ss_dssp EECS
T ss_pred cCCC
Confidence 9996
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=181.15 Aligned_cols=193 Identities=20% Similarity=0.228 Sum_probs=145.3
Q ss_pred CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEE
Q 009835 141 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220 (524)
Q Consensus 141 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 220 (524)
.+..+.+..+.+....+ +..+++|+.|++++|.+..++. +..+++|++|+|++|.+.+.+ .+..+++|+.|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~----~l~~l~~L~~L 92 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIK----PLTNLKNLGWL 92 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTSCCCCCG----GGGGCTTCCEE
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCCCCCCCh----hhccCCCCCEE
Confidence 34555666666665443 5678899999999999886653 788999999999999988775 27889999999
Q ss_pred EeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeec
Q 009835 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLT 300 (524)
Q Consensus 221 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 300 (524)
+|++|.+.+.. .+..+ ++|++|+|++|.+.+ .+.+..+. +|+.|+|++|.+++. ..+..+++|+.|+|+
T Consensus 93 ~Ls~N~l~~l~----~l~~l-~~L~~L~Ls~N~l~~---l~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 93 FLDENKIKDLS----SLKDL-KKLKSLSLEHNGISD---INGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp ECCSSCCCCCT----TSTTC-TTCCEEECTTSCCCC---CGGGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred ECcCCCCCCCh----hhccC-CCCCEEEecCCCCCC---CccccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 99999887643 23444 889999999998844 24444444 888888888888864 567788888888888
Q ss_pred CcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC
Q 009835 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP 363 (524)
Q Consensus 301 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~ 363 (524)
+|.+.+..| +..+++|+.|+|++|.+++. ..+..+ ++|+.|+|++|.+++.+.
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l------~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGL------KNLDVLELFSQECLNKPI 214 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTC------TTCSEEECCSEEEECCCC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccC------CCCCEEEccCCcCcCCcc
Confidence 888886655 78888888888888888764 234443 488888888888876543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=156.35 Aligned_cols=155 Identities=25% Similarity=0.324 Sum_probs=101.7
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCcccccccch-hhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCcc
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~ 349 (524)
+.+++++|.++ .+|..+. .+|++|++++|.+++..+. .+..+++|++|+|++|.+++..|..|..++ +|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS------HIQ 81 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT------TCC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc------cCC
Confidence 45555555554 3444332 2566666666666644443 366666777777777777666666665544 677
Q ss_pred EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCC
Q 009835 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 350 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~ 428 (524)
+|+|++|++++..+. +.++++|++|+|++|++++..|..+..+++|++|++++|+++|.++.......+....+.++..
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~ 161 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAA 161 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCC
Confidence 777777777776665 7778888888888888888888888888888888888888888777543333333334455555
Q ss_pred CCCCCC
Q 009835 429 LCGLPL 434 (524)
Q Consensus 429 ~C~~~~ 434 (524)
.|+.|.
T Consensus 162 ~C~~P~ 167 (192)
T 1w8a_A 162 RCGAPS 167 (192)
T ss_dssp BBCSST
T ss_pred CCCCCh
Confidence 665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-21 Score=203.48 Aligned_cols=216 Identities=19% Similarity=0.170 Sum_probs=121.2
Q ss_pred CCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccC
Q 009835 137 GSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS 216 (524)
Q Consensus 137 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 216 (524)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|... .. +. ..+. .+...+. .+..++.+++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l-~~----l~--~ll~-----~~~~~~~--~~~~l~~l~~ 410 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL-LT----II--LLMR-----ALDPLLY--EKETLQYFST 410 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHH-HH----HH--HHHH-----HHCTGGG--HHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhh-hh----HH--HHHH-----hcccccC--CHHHHHHHHh
Confidence 45666777777766664 55667777777777776554310 00 00 0000 0111111 1455666666
Q ss_pred CCEEE-eeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccc
Q 009835 217 LKTLV-LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLR 295 (524)
Q Consensus 217 L~~L~-L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 295 (524)
|+.|+ ++.|.+ ..|+.+.+++|.+. .++. ..|+.|++++|.+++ +|. ++.+++|+
T Consensus 411 L~~L~~l~~n~~--------------~~L~~l~l~~n~i~--~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~ 466 (567)
T 1dce_A 411 LKAVDPMRAAYL--------------DDLRSKFLLENSVL--KMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVT 466 (567)
T ss_dssp HHHHCGGGHHHH--------------HHHHHHHHHHHHHH--HHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCC
T ss_pred cccCcchhhccc--------------chhhhhhhhccccc--ccCc------cCceEEEecCCCCCC-CcC-ccccccCc
Confidence 66665 333311 33444444444441 1111 146666666666664 444 66666777
Q ss_pred eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC-CC-CCCCCCCcE
Q 009835 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL-PD-LGGFSSLKI 373 (524)
Q Consensus 296 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-~~-~~~l~~L~~ 373 (524)
.|+|++|.++ .+|..++.+++|+.|+|++|.+++. | .+..++ +|+.|+|++|++++.. |. +..+++|+.
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~------~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLP------RLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCS------SCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCC------CCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 7777777766 5666667777777777777777653 3 444443 6777777777777664 43 677777777
Q ss_pred EEccCCcCccccch---hhhcCCCCCEEEC
Q 009835 374 LVLGENRLNGTIDK---SLSQLLKLESLSL 400 (524)
Q Consensus 374 L~Ls~N~l~~~~p~---~~~~l~~L~~L~l 400 (524)
|+|++|.+++..|. .+..+++|+.|++
T Consensus 538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777777655442 2344677777754
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=153.89 Aligned_cols=156 Identities=24% Similarity=0.219 Sum_probs=124.1
Q ss_pred CEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceE
Q 009835 218 KTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFL 297 (524)
Q Consensus 218 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 297 (524)
+.+++++|.++..+. .+ ...+++|++++|.+++ ..+...+...++|++|++++|.+++..+..|..+++|++|
T Consensus 14 ~~l~~s~n~l~~iP~---~~---~~~~~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE---HI---PQYTAELRLNNNEFTV-LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCS---CC---CTTCSEEECCSSCCCE-ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcccCcc---CC---CCCCCEEEcCCCcCCc-cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 356666666655432 11 2566788888888854 2233444444589999999999987777788999999999
Q ss_pred eecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEc
Q 009835 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVL 376 (524)
Q Consensus 298 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~L 376 (524)
+|++|.+++..+..|..+++|++|+|++|.+++..|..|..++ +|++|+|++|++++..|. +..+++|+.|++
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS------SVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT------TCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc------cCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 9999999988888899999999999999999988888887765 899999999999988776 899999999999
Q ss_pred cCCcCccccc
Q 009835 377 GENRLNGTID 386 (524)
Q Consensus 377 s~N~l~~~~p 386 (524)
++|.+.+..+
T Consensus 161 ~~N~l~c~c~ 170 (220)
T 2v70_A 161 LANPFNCNCY 170 (220)
T ss_dssp CSCCEECSGG
T ss_pred cCcCCcCCCc
Confidence 9999986544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-18 Score=189.32 Aligned_cols=262 Identities=19% Similarity=0.154 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCC
Q 009835 36 CIDEEREALLTFKQSLVDE-YGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKL 114 (524)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~-~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l 114 (524)
..+.++.+++++...+..+ ......|.. .....+.|.++.++. .+++.|+|.++ .+.. .+..+...
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~--~~~~~l~L~~n--------~~~~-~~~~~l~~ 195 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVST--PLTPKIELFAN--------GKDE-ANQALLQH 195 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceecC--CccceEEeeCC--------CCCc-chhhHhhc
Confidence 4566888999988776422 223345642 345567898888853 67899999875 3433 34333333
Q ss_pred CCCCEEEc-----cCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 115 HDLRHLDL-----SNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 115 ~~L~~L~L-----s~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.+|+.+.+ +.|.+.. .+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++.++ ..+.+++
T Consensus 196 l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~ 270 (727)
T 4b8c_D 196 KKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELP--AEIKNLS 270 (727)
T ss_dssp ----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCC--GGGGGGT
T ss_pred CccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccC--hhhhCCC
Confidence 33333332 2333331 4677888888999999888877 66777778888999999988888544 5578888
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcccc
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 269 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 269 (524)
+|++|+|++|.++.++ ..+..+++|++|+|++|.+... |. .+..+ ++|++|+|++|.+++ .++..+......
T Consensus 271 ~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~L~~N~l~~l-p~--~~~~l-~~L~~L~L~~N~l~~-~~p~~~~~~~~~ 342 (727)
T 4b8c_D 271 NLRVLDLSHNRLTSLP---AELGSCFQLKYFYFFDNMVTTL-PW--EFGNL-CNLQFLGVEGNPLEK-QFLKILTEKSVT 342 (727)
T ss_dssp TCCEEECTTSCCSSCC---SSGGGGTTCSEEECCSSCCCCC-CS--STTSC-TTCCCEECTTSCCCS-HHHHHHHHHHHH
T ss_pred CCCEEeCcCCcCCccC---hhhcCCCCCCEEECCCCCCCcc-Ch--hhhcC-CCccEEeCCCCccCC-CChHHHhhcchh
Confidence 8889999888888654 4678888888888888888754 43 34444 888888888888865 555544443323
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCc--------ccccccchhhcCCCCCCEEEccCCCCC
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN--------ELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
+..+++++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....+++|.+.
T Consensus 343 ~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 343 GLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred hhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 34577888888877765 3455566665 333333444455666667777777664
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=147.02 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=111.1
Q ss_pred hcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcc
Q 009835 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291 (524)
Q Consensus 212 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 291 (524)
..+++|++|++++|.+.... .+..+ ++|++|++++|.+. .++.+.... +|++|++++|.+++..+..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~----~l~~l-~~L~~L~l~~n~~~---~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT----GIEYA-HNIKDLTINNIHAT---NYNPISGLS-NLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT----TGGGC-TTCSEEEEESCCCS---CCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhcCCccEEeccCCCccChH----HHhcC-CCCCEEEccCCCCC---cchhhhcCC-CCCEEEeECCccCcccChhhcCC
Confidence 55667777777777766432 22333 77777777777652 234444444 88888888888887677778888
Q ss_pred cccceEeecCcccccccchhhcCCCCCCEEEccCCC-CCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNK-LSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSS 370 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~ 370 (524)
++|++|++++|.+++..|..+..+++|++|++++|. ++.. + .+..++ +|+.|++++|.+++.. .+..+++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~------~L~~L~l~~n~i~~~~-~l~~l~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLP------ELKSLNIQFDGVHDYR-GIEDFPK 182 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCS------SCCEEECTTBCCCCCT-TGGGCSS
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCC------CCCEEECCCCCCcChH-HhccCCC
Confidence 888888888888887778888888888888888887 6544 3 455544 8889999998888643 6788889
Q ss_pred CcEEEccCCcCcc
Q 009835 371 LKILVLGENRLNG 383 (524)
Q Consensus 371 L~~L~Ls~N~l~~ 383 (524)
|+.|++++|++.+
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999998763
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=149.21 Aligned_cols=180 Identities=22% Similarity=0.210 Sum_probs=132.7
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccch-hhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
-+++++++|++ ..+|..+. .++++|++++|.+++..+. .+..+++|++|+|++|.+++..|..|..+++|++|+
T Consensus 10 ~~~l~~s~~~l--~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGL--KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCC--SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCCc--CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 36888888888 46666443 3899999999999866554 488899999999999999988889999999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchh-hhcCCCCCEEEC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKS-LSQLLKLESLSL 400 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l 400 (524)
|++|.+++..+..|..++ +|++|+|++|++++..|. +..+++|++|+|++|.+.+..+.. +.. .++...+
T Consensus 85 Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~ 156 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLH------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSL 156 (192)
T ss_dssp CCSCCCCEECSSSSTTCT------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCC
T ss_pred CCCCcCCccCHHHhcCCC------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCC
Confidence 999999988887777655 899999999999998776 889999999999999998765522 111 1222234
Q ss_pred cCCcCeeeCCCCCcccccccccccCCCCCCCCCCCCCC
Q 009835 401 GRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPNKC 438 (524)
Q Consensus 401 ~~N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~~~~~~c 438 (524)
..+...+..|.. +.......+..+...|..+.+..|
T Consensus 157 ~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 157 NGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp SGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---CC
T ss_pred CCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCCCC
Confidence 455666666643 233333445566666765544444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=164.28 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=171.3
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC--------CCCCcEEEccCCCCCCCCCchhc
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY--------LSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
+++|++|||++|++... ...-+.++.++.+.+..|. ..+.+|.+ +++|++|+|.+ .++.++. ..|
T Consensus 48 l~~L~~LdLs~n~i~~~--~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~-~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY--SGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED-AAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCE--EESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT-TTT
T ss_pred hccCeEEecCcceeEEe--cCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhH-HHh
Confidence 67788888888877621 1111122223444444442 23345666 88888888887 6665554 567
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC----CCCCCCCchhhhcccCccc-EEEccCCCCCCCCCC
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA----LPPINPSSIWHFNLSTSIE-TLDLSDNNLPSSSVY 260 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~ 260 (524)
.+|++|++|++++|.+..+.. .+|..+.++..+....+. ....... .+..+ ..|+ .+++.... .++
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~--~aF~~~~~l~~l~~~~~~~~~~~~~i~~~--~f~~~-~~L~~~i~~~~~~----~l~ 191 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLP--EALADSVTAIFIPLGSSDAYRFKNRWEHF--AFIEG-EPLETTIQVGAMG----KLE 191 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECT--TSSCTTTCEEEECTTCTHHHHTSTTTTTS--CEEES-CCCEEEEEECTTC----CHH
T ss_pred hcCcccceEEcCCCCccccch--hhhcCCCceEEecCcchhhhhcccccccc--ccccc-cccceeEEecCCC----cHH
Confidence 888888888888887766542 456666666655554421 1111111 22233 4555 44444321 233
Q ss_pred chhhhc---cccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHH
Q 009835 261 PWLFNL---SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQ 337 (524)
Q Consensus 261 ~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 337 (524)
..++.. ..++..+.+.++-...........+++|+.|++++|+++...+.+|.++++|+.+++.+| +..+.+..|.
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~ 270 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS 270 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh
Confidence 333322 336777777665333222222234789999999999998777788999999999999998 7777778888
Q ss_pred hccCCCCCCCcc-EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 338 NLSGGCTMNSLE-GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 338 ~l~~~~~~~~L~-~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
.+. +|+ .+++.+ .++.+.+. |.++++|+.+++++|.++...+..|.++++|+.++.
T Consensus 271 ~~~------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCG------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCT------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCh------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 766 899 999988 67766655 999999999999999999777888999999998864
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=156.31 Aligned_cols=147 Identities=22% Similarity=0.321 Sum_probs=82.5
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+. .++ .+... ++|++|++++|.+++..+ +..+++|++|++++|++++ +|. +.. ++|++|
T Consensus 41 ~~L~~L~l~~n~i~--~l~-~l~~l-~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ--SLA-GMQFF-TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRL 111 (263)
T ss_dssp TTCSEEECTTSCCC--CCT-TGGGC-TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEE
T ss_pred CcCcEEECcCCCcc--cch-HHhhC-CCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEE
Confidence 55555555555552 222 22222 255666666655554332 5556666666666666653 222 222 566666
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
++++|.+++.. .+..+ ++|+.|++++|++++. +.+..+++|+.|++++|++++. ..+..+++|+.|+++
T Consensus 112 ~L~~N~l~~~~--~l~~l------~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 112 FLDNNELRDTD--SLIHL------KNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp ECCSSCCSBSG--GGTTC------TTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred EccCCccCCCh--hhcCc------ccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 66666665531 23333 3666666666666654 3466667777777777777654 456667777777777
Q ss_pred CCcCeee
Q 009835 402 RNSFTGK 408 (524)
Q Consensus 402 ~N~l~~~ 408 (524)
+|++++.
T Consensus 181 ~N~~~~~ 187 (263)
T 1xeu_A 181 GQKCVNE 187 (263)
T ss_dssp EEEEECC
T ss_pred CCcccCC
Confidence 7776644
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-17 Score=146.01 Aligned_cols=131 Identities=21% Similarity=0.317 Sum_probs=93.4
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccE
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~ 350 (524)
+.+++++|.++ .+|..+ .++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..++ +|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~------~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT------QLLT 82 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT------TCCE
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC------CCCE
Confidence 45555555555 344332 245666666666666 4556666677777777777777666666665554 7777
Q ss_pred EEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 351 VCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 351 L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
|+|++|++++..+. +..+++|++|+|++|.+++..+..|..+++|+.|++++|++.+.+..
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 77777777777665 78888999999999999876666788899999999999999987653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=139.44 Aligned_cols=131 Identities=24% Similarity=0.211 Sum_probs=109.4
Q ss_pred ccccEEEeeccccc-cccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCC
Q 009835 268 RNIQYLNLGFNSLQ-GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 346 (524)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP------ 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC------
Confidence 47888888888887 56777778888888999988888855 6788888999999999998887777777665
Q ss_pred CccEEEcCCCCCccCC--CCCCCCCCCcEEEccCCcCccccc---hhhhcCCCCCEEECcCCcCe
Q 009835 347 SLEGVCLEGNDITGPL--PDLGGFSSLKILVLGENRLNGTID---KSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~ 406 (524)
+|++|++++|.+++.. ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8999999999988764 458889999999999999986655 57889999999999999876
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-17 Score=177.64 Aligned_cols=181 Identities=22% Similarity=0.297 Sum_probs=115.9
Q ss_pred HhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhh
Q 009835 209 QVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288 (524)
Q Consensus 209 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 288 (524)
..+..+++|+.|+|++|.+....+ .++.+ ++|++|+|++|.+ ..+|..+..+. +|+.|+|++|.++ .+|..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~---~~~~l-~~L~~L~Ls~N~l--~~lp~~~~~l~-~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISA---NIFKY-DFLTRLYLNGNSL--TELPAEIKNLS-NLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCG---GGGGC-CSCSCCBCTTSCC--SCCCGGGGGGT-TCCEEECTTSCCS-SCCSSG
T ss_pred hhhccCCCCcEEECCCCCCCCCCh---hhcCC-CCCCEEEeeCCcC--cccChhhhCCC-CCCEEeCcCCcCC-ccChhh
Confidence 466777788888888888774443 45555 8899999999998 46777776665 9999999999998 778899
Q ss_pred hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCC
Q 009835 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF 368 (524)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l 368 (524)
+.+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+. ..+..++|++|.+++.+|.
T Consensus 290 ~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-----~~~~~l~l~~N~l~~~~p~---- 359 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS-----VTGLIFYLRDNRPEIPLPH---- 359 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH-----HHHHHHHHHHCCCCCCCCC----
T ss_pred cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc-----hhhhHHhhccCcccCcCcc----
Confidence 99999999999999998 7788899999999999999999999998886643 0234578999999887664
Q ss_pred CCCcEEEccCC--------cCccccchhhhcCCCCCEEECcCCcCeee
Q 009835 369 SSLKILVLGEN--------RLNGTIDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 369 ~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
.|+.|++++| .+.+..+..+..+..+....+++|-+.+.
T Consensus 360 -~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 360 -ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp -C-----------------------------------------CCCGG
T ss_pred -ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 5677777777 34444445556667777788888877643
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=148.15 Aligned_cols=150 Identities=20% Similarity=0.266 Sum_probs=71.7
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+.+..+ +.++++|++|++++|.+..++. +.. ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---~~~-~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---IPS-AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT---CCC-SS
T ss_pred hhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc---ccc-Cc
Confidence 4445555555555555544 23 34455555555555555544332 4555555555555555544332 122 44
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccc
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 270 (524)
|++|++++|.+++.+ .+..+ ++|++|++++|++++ + +.+... ++|
T Consensus 108 L~~L~L~~N~l~~~~----~l~~l---------------------------~~L~~L~Ls~N~i~~--~-~~l~~l-~~L 152 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD----SLIHL---------------------------KNLEILSIRNNKLKS--I-VMLGFL-SKL 152 (263)
T ss_dssp CCEEECCSSCCSBSG----GGTTC---------------------------TTCCEEECTTSCCCB--C-GGGGGC-TTC
T ss_pred ccEEEccCCccCCCh----hhcCc---------------------------ccccEEECCCCcCCC--C-hHHccC-CCC
Confidence 555555555444431 24444 455555555555522 1 122222 255
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCccccc
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG 306 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 306 (524)
+.|++++|.+++. ..+..+++|+.|++++|.+..
T Consensus 153 ~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 5555555555543 344555555555555555553
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-16 Score=134.85 Aligned_cols=127 Identities=23% Similarity=0.221 Sum_probs=107.0
Q ss_pred ccccEEEeeccccc-cccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCC
Q 009835 268 RNIQYLNLGFNSLQ-GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 346 (524)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP------ 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC------
Confidence 47888888888887 67777778888999999999988865 6788889999999999999887888877766
Q ss_pred CccEEEcCCCCCccCC--CCCCCCCCCcEEEccCCcCccccc---hhhhcCCCCCEEECcC
Q 009835 347 SLEGVCLEGNDITGPL--PDLGGFSSLKILVLGENRLNGTID---KSLSQLLKLESLSLGR 402 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~ 402 (524)
+|++|++++|.+++.. ..+..+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8999999999998753 448889999999999999987666 5788999999999864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-19 Score=185.37 Aligned_cols=192 Identities=19% Similarity=0.149 Sum_probs=138.2
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
..+++|+.|+|++|.++.. +..++.+++|+.|++++|.. .......+.. +...+ ..+..+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~L---p~~i~~l~~L~~L~l~~n~~---------l~~l~~ll~~-----~~~~~-~~~~~l~~ 407 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVL---QSELESCKELQELEPENKWC---------LLTIILLMRA-----LDPLL-YEKETLQY 407 (567)
T ss_dssp STTTTSSSCCCCHHHHHHH---HHHHHHHHHHHHHCTTCHHH---------HHHHHHHHHH-----HCTGG-GHHHHHHH
T ss_pred ccCccceeccCChhhHHhh---HHHHHHHHHHHHhccccchh---------hhhHHHHHHh-----ccccc-CCHHHHHH
Confidence 5677778888888877644 46777788888887755421 0000000000 01111 22222222
Q ss_pred ccccccEEE--------------eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCc
Q 009835 266 LSRNIQYLN--------------LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331 (524)
Q Consensus 266 ~~~~L~~L~--------------Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 331 (524)
+. +|+.|+ +++|.++.. + ...|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .
T Consensus 408 l~-~L~~L~~l~~n~~~~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 408 FS-TLKAVDPMRAAYLDDLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp HH-HHHHHCGGGHHHHHHHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred HH-hcccCcchhhcccchhhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 22 555555 334444321 1 1358999999999996 665 999999999999999999 6
Q ss_pred hhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcccc-chhhhcCCCCCEEECcCCcCeeeCC
Q 009835 332 LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTI-DKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 332 ~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+|..++.++ +|+.|+|++|.+++. |.++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|
T Consensus 478 lp~~~~~l~------~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 478 LPPALAALR------CLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCGGGGGCT------TCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cchhhhcCC------CCCEEECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 677888766 999999999999984 58999999999999999999887 9999999999999999999998877
Q ss_pred CC
Q 009835 411 LG 412 (524)
Q Consensus 411 ~~ 412 (524)
..
T Consensus 551 ~~ 552 (567)
T 1dce_A 551 IQ 552 (567)
T ss_dssp CT
T ss_pred HH
Confidence 53
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-16 Score=136.04 Aligned_cols=137 Identities=23% Similarity=0.212 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCCCCCCCCCcce-eecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLK-GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
.+++.|+++++ .++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+.+|..+.
T Consensus 24 ~~L~~L~l~~n--------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNC--------KSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp TSCSEEECCSC--------BCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred ccCCEEECCCC--------CCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 45777777774 555 5677777777778888888877766 3 6677777788888887777776777777
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCch-HhhhcccCCCEEEeeCCCCCCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLVLHSCALPPI 230 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~ 230 (524)
++++|++|++++|.+..++....+..+++|++|++++|.++..+.+. ..+..+++|++|++++|.+...
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 77777888887777776554456777777777777777777664211 3566677777777777765543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=135.91 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=97.0
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCcc
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~ 349 (524)
.+.+++++++++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..++ +|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT------KLT 79 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TCC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC------ccC
Confidence 455666666665 334322 25677777777777765555667777777777777777766665555544 788
Q ss_pred EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 350 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
+|++++|.+++.++. +..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|.
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 888888888877666 67888999999999999866666678889999999999999987763
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=132.33 Aligned_cols=130 Identities=23% Similarity=0.221 Sum_probs=80.6
Q ss_pred CcEEEEEcCCCCCCCCCCCcce-eecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLK-GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
.+++.|+++++ .++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+.+|..+.
T Consensus 17 ~~l~~L~l~~n--------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNS--------RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGCSEEECTTC--------BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred ccCeEEEccCC--------cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 35666666664 455 5666666667777777777776665 2 5566667777777777766665666666
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc-hHhhhcccCCCEEEee
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW-FQVVAKLRSLKTLVLH 223 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~ 223 (524)
++++|++|++++|.+.+.+.+..+..+++|++|++++|.+++.+.+ ...+..+++|+.|+++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6667777777776666443334566666666666666666655421 1345566666666554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-15 Score=132.05 Aligned_cols=129 Identities=25% Similarity=0.308 Sum_probs=111.9
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEc
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 323 (524)
-+++++++|.+ ..+|..+ .++|++|++++|.++ .+|..+..+++|+.|+|++|.+++..+..|.++++|++|+|
T Consensus 12 ~~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 12 DTVVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 36788888888 4566543 348999999999998 67788999999999999999999888888999999999999
Q ss_pred cCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccc
Q 009835 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 324 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 384 (524)
++|.+++..+..|..++ +|+.|+|++|.++..++. +..+++|+.|++++|.+...
T Consensus 86 s~N~l~~i~~~~f~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLK------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCT------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCccCEeCHHHhCCCC------CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999998888887765 999999999999988776 88999999999999998753
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=129.44 Aligned_cols=133 Identities=23% Similarity=0.251 Sum_probs=111.4
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
..+.++++++++ ..+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 8 ~~~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 8 SGTEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp ETTEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 456788888888 4455433 34899999999999876667788899999999999999977777788999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTID 386 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 386 (524)
+++|.+++..+..+..++ +|++|++++|.+++.++. +..+++|++|++++|.+.+..|
T Consensus 83 l~~N~l~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLT------QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCc------ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999988777776655 899999999999987776 6889999999999999997665
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-15 Score=147.64 Aligned_cols=261 Identities=14% Similarity=0.051 Sum_probs=181.5
Q ss_pred CCcEEEEEcCCCCCCCCCCCcce--eecCccccCCCCCCEEEccCCCCCCCCCccccCC--------CCCCCEEEccCCC
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLK--GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGS--------LSRLRYLNLSCGT 151 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~--------l~~L~~L~L~~n~ 151 (524)
..+++.|||+++ .+. ...... ++.++.+.+..|.+. +..|.+ +++|++|+|.+ .
T Consensus 48 l~~L~~LdLs~n--------~i~~~~~~~~~---~~~~~~~~~~~~~I~----~~aF~~~~~~~~~g~~~L~~l~L~~-~ 111 (329)
T 3sb4_A 48 FPSLKVLDISNA--------EIKMYSGKAGT---YPNGKFYIYMANFVP----AYAFSNVVNGVTKGKQTLEKVILSE-K 111 (329)
T ss_dssp CTTCCEEEEEEE--------EECCEEESSSS---SGGGCCEEECTTEEC----TTTTEEEETTEEEECTTCCC-CBCT-T
T ss_pred hccCeEEecCcc--------eeEEecCcccc---ccccccccccccccC----HHHhcccccccccccCCCcEEECCc-c
Confidence 357899999985 444 222222 222556666666442 345666 89999999987 7
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC----CCCCCCchHhhhcccCCC-EEEeeCCC
Q 009835 152 SLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN----LTKSSDWFQVVAKLRSLK-TLVLHSCA 226 (524)
Q Consensus 152 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~l~~l~~L~-~L~L~~n~ 226 (524)
+..+.+.+|.++++|++|++++|.+..++. ..|.++.++.++.+..+. ..... ...+..+..|+ .+.+....
T Consensus 112 i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~--~~~f~~~~~L~~~i~~~~~~ 188 (329)
T 3sb4_A 112 IKNIEDAAFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWE--HFAFIEGEPLETTIQVGAMG 188 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTT--TSCEEESCCCEEEEEECTTC
T ss_pred ccchhHHHhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhcccccc--ccccccccccceeEEecCCC
Confidence 877777889999999999999998876665 667788788877766532 11121 12455666776 45554321
Q ss_pred CCCCCCCchhhh---cccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcc
Q 009835 227 LPPINPSSIWHF---NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNE 303 (524)
Q Consensus 227 l~~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 303 (524)
. .+. ..+ ....+++.+.+.++-. . .....+...+++|+.+++++|+++...+..|.++++|+.|++.+|
T Consensus 189 ~---l~~--~~~~~~~~~~~~~~l~~~~~l~-~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 189 K---LED--EIMKAGLQPRDINFLTIEGKLD-N-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp C---HHH--HHHHTTCCGGGCSEEEEEECCC-H-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred c---HHH--HHhhcccCccccceEEEeeeec-H-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence 1 111 111 1126677777766532 1 122233334568999999999998766778999999999999998
Q ss_pred cccccchhhcCCCCCC-EEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEc
Q 009835 304 LEGGIPKFFGKMCSLN-RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVL 376 (524)
Q Consensus 304 l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~L 376 (524)
++...+.+|.++++|+ .+++.+ .++.+.+..|..++ +|+.+++++|.++.+.+. |.++++|+.++.
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~------~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD------NLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT------TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc------cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7767778899999999 999998 77777788888766 899999999999987776 999999998864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=137.17 Aligned_cols=263 Identities=14% Similarity=0.127 Sum_probs=172.6
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+..++.+.+.++ ++.. -..+|.++ +|+.+++..+ +......+|.++ +|+.+++.. .+..++. ..|.+|++|+.
T Consensus 112 ~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~-~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE-DIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS-STTTTCTTCCE
T ss_pred cCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH-HHhhCcccCCe
Confidence 466777777553 4443 34566664 6888888744 666666677774 688888875 5554444 55778888888
Q ss_pred EEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEE
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYL 273 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 273 (524)
+++++|.++.++. ..|. ..+|+.+.+..+ +..... ..+..+++|+.+++..+ + ..+....+... +|+.+
T Consensus 185 l~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~~---~aF~~~~~L~~l~l~~~-l--~~I~~~aF~~~-~L~~i 253 (401)
T 4fdw_A 185 ADLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIGS---QAFLKTSQLKTIEIPEN-V--STIGQEAFRES-GITTV 253 (401)
T ss_dssp EECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEECT---TTTTTCTTCCCEECCTT-C--CEECTTTTTTC-CCSEE
T ss_pred eecCCCcceEech--hhEe-ecccCEEEeCCc-hheehh---hHhhCCCCCCEEecCCC-c--cCccccccccC-CccEE
Confidence 8888887776653 3444 477888888644 444433 23333377888888764 3 35555556654 78888
Q ss_pred EeeccccccccchhhhcccccceEeecCcccc-----cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 274 NLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE-----GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 274 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
.+. +.++.....+|.++++|+.+++.+|.+. ...+.+|.++++|+.+++.. .++......|..+. +|
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~------~L 325 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR------KV 325 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC------SC
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC------Cc
Confidence 884 4455455667778888888888777654 34556777888888888873 46666666666654 77
Q ss_pred cEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCC-CCCEEECcCCc
Q 009835 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL-KLESLSLGRNS 404 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~ 404 (524)
+.+.|..+ ++.+... |.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 88888554 5444443 7777 788888888777655566666664 56677766654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=137.05 Aligned_cols=253 Identities=13% Similarity=0.130 Sum_probs=196.2
Q ss_pred ceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCc
Q 009835 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSL 182 (524)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 182 (524)
++..-..+|.++ +|+.+++..+ ++.. -..+|.++ +|+.+.+.. .+....+.+|.++++|+.+++.+|.++.++.
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I-~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~- 197 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSI-GDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA- 197 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEE-CTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT-
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEE-CHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech-
Confidence 443444567775 7999999876 6654 45677775 799999984 7777777899999999999999999987765
Q ss_pred hhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCch
Q 009835 183 QWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262 (524)
Q Consensus 183 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 262 (524)
..|. +.+|+.+.+..+ +..+. ..+|.++++|+.+++..+ +..... ..+.. .+|+.+++.+ .+ ..+...
T Consensus 198 ~aF~-~~~L~~l~lp~~-l~~I~--~~aF~~~~~L~~l~l~~~-l~~I~~---~aF~~-~~L~~i~lp~-~i--~~I~~~ 265 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPVT-LKEIG--SQAFLKTSQLKTIEIPEN-VSTIGQ---EAFRE-SGITTVKLPN-GV--TNIASR 265 (401)
T ss_dssp TTTT-TCCCSEEECCTT-CCEEC--TTTTTTCTTCCCEECCTT-CCEECT---TTTTT-CCCSEEEEET-TC--CEECTT
T ss_pred hhEe-ecccCEEEeCCc-hheeh--hhHhhCCCCCCEEecCCC-ccCccc---ccccc-CCccEEEeCC-Cc--cEEChh
Confidence 4455 689999999854 66554 368999999999999875 444433 44555 7899999954 44 467777
Q ss_pred hhhccccccEEEeeccccc-----cccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHH
Q 009835 263 LFNLSRNIQYLNLGFNSLQ-----GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQ 337 (524)
Q Consensus 263 ~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 337 (524)
.+..+++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++.....+|.++++|+.++|..+ ++......|.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 7888889999999988765 34567899999999999994 577677789999999999999665 6666666666
Q ss_pred hccCCCCCCCccEEEcCCCCCccCCCC-CCCCC-CCcEEEccCCcCc
Q 009835 338 NLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFS-SLKILVLGENRLN 382 (524)
Q Consensus 338 ~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~-~L~~L~Ls~N~l~ 382 (524)
.+ +|+.+++++|.+...... |.+++ +++.|.+..+.+.
T Consensus 344 ~~-------~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 344 NT-------GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SS-------CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CC-------CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 53 799999999988876655 77774 7899999887653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=127.75 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=77.0
Q ss_pred cccEEEeeccccccccchhhhcc-cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLM-VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
+|+.|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..++ +
T Consensus 20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~ 89 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP------D 89 (176)
T ss_dssp SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT------T
T ss_pred CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC------C
Confidence 45555555555552 232 2222 2566666666665543 3455666666666666666655444445544 6
Q ss_pred ccEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcCccccch----hhhcCCCCCEEECcCCcCe
Q 009835 348 LEGVCLEGNDITGPLP--DLGGFSSLKILVLGENRLNGTIDK----SLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~ 406 (524)
|++|++++|.++...+ .+..+++|+.|++++|.++ .+|. .+..+++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666666654443 3667777888888888776 3444 3777888888888887654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=126.93 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=68.9
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.+.++.+|++|++++|.++. +|......++|++|++++|.+.+. ..+..+++|++|++++|.+..++. ..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc-chhhcCC
Confidence 45567777777777777775 444333334777777777777654 456677777777777777665432 3345666
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCC
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 228 (524)
+|++|++++|.++..+. ...+..+++|+.|++++|.+.
T Consensus 89 ~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 89 DLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp TCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGG
T ss_pred CCCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCC
Confidence 66666666666654432 124555555555555555554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-16 Score=139.32 Aligned_cols=131 Identities=25% Similarity=0.298 Sum_probs=81.2
Q ss_pred hhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC
Q 009835 262 WLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341 (524)
Q Consensus 262 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 341 (524)
.+.... +|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++. | .+..++
T Consensus 43 ~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~- 115 (198)
T 1ds9_A 43 TLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV- 115 (198)
T ss_dssp HHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH-
T ss_pred HHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC-
Confidence 343333 66666666666664 44 5666666666666666666 4555555556666666666666652 2 355544
Q ss_pred CCCCCCccEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcCccccch----------hhhcCCCCCEEECcCCcCe
Q 009835 342 GCTMNSLEGVCLEGNDITGPLP--DLGGFSSLKILVLGENRLNGTIDK----------SLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 342 ~~~~~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l~~L~~L~l~~N~l~ 406 (524)
+|+.|++++|++++..+ .+..+++|++|++++|.+.+..|. .+..+++|+.|| +|+++
T Consensus 116 -----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 -----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp -----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred -----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 66677777666665332 356677777777777777655443 267778888776 55554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=121.52 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=82.3
Q ss_pred cceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCc
Q 009835 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLK 372 (524)
Q Consensus 294 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~ 372 (524)
.+.+++++|.++ .+|..+. ++|++|+|++|.+++..+..|..++ +|++|+|++|++++.++. +..+++|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~------~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT------QLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT------TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcc------cCCEEECCCCCcCccChhhccCCCCCC
Confidence 456667777666 3454432 5677777777777777666666654 778888888888777666 67888999
Q ss_pred EEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 373 ILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 373 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
+|+|++|++++..+..|..+++|++|++++|++++.++.
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 999999999877777788899999999999999887764
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-13 Score=118.99 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=74.3
Q ss_pred ceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcE
Q 009835 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKI 373 (524)
Q Consensus 295 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~ 373 (524)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..++ +|++|+|++|++++.++. +..+++|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV------NLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc------CCCEEECCCCCCCccChhHhCCcchhhE
Confidence 45566666654 4444332 5666666666666666666665544 677777777777766665 677888888
Q ss_pred EEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 374 LVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 374 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8888888886666668888888888888888887655
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-14 Score=132.11 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=71.5
Q ss_pred CCCCCcEEEccCCCCCCC----CCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCch
Q 009835 187 HLSSLRHLDLSYINLTKS----SDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 262 (524)
....++.++++.+.+.+. ..++..+..+++|++|++++|.+.+. + .+..+ ++|++|++++|.+. .++..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~---~~~~l-~~L~~L~l~~n~l~--~l~~~ 88 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S---SLSGM-ENLRILSLGRNLIK--KIENL 88 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C---CHHHH-TTCCEEEEEEEEEC--SCSSH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c---ccccC-CCCCEEECCCCCcc--cccch
Confidence 344555555555544433 11223566666666666666666553 2 22333 66666666666662 34443
Q ss_pred hhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCCCCc
Q 009835 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKLSGD 331 (524)
Q Consensus 263 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ 331 (524)
+.... +|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 89 ~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 89 DAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 33323 66666666666654 33 45556666666666666653222 3455566666666666655444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=115.85 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=78.3
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
..+.+++++|.++. +|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..++ +|
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT------QL 80 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC------CC
Confidence 34566666666663 44443 25677777777777766677777777777777777777776666666554 78
Q ss_pred cEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCcccc
Q 009835 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTI 385 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 385 (524)
++|+|++|++++.++. +..+++|++|+|++|.++...
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888888888877775 788889999999999887553
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.1e-14 Score=139.13 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=62.8
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh-----cccccceEeecCcccccc----cchhh
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-----LMVSLRFLYLTSNELEGG----IPKFF 312 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~l 312 (524)
++|++|+|++|.++. .....+....++|+.|++++|.+++.....+. ..++|++|+|++|.++.. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 355555555555533 22222333333556666666655543333221 234555666666555431 23333
Q ss_pred cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC-----CCCCCCCCcEEEccCCcCcccc
Q 009835 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP-----DLGGFSSLKILVLGENRLNGTI 385 (524)
Q Consensus 313 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~ 385 (524)
..+++|++|+|++|.+++.....+...- ...++|++|+|++|.++.... .+...++|++|+|++|.+++..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L--~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQL--DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHG--GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHH--hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 4555566666666655543322222100 011245555555555443211 1223445555555555554433
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-12 Score=111.35 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
+.++++++ .+ +.+|..+. ++|++|+|++|.+++. .|..|.++++|++|+|++|.+.+..+..|.++++
T Consensus 15 ~~l~~~~n--------~l-~~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNI--------RL-ASVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSS--------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCC--------CC-CccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 45777774 34 34565553 6777888888877775 5677777777777777777777665556677777
Q ss_pred CcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCC
Q 009835 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS 204 (524)
Q Consensus 166 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 204 (524)
|++|+|++|++..++. ..+..+++|++|++++|.+...
T Consensus 83 L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTT
T ss_pred hhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccc
Confidence 7777777777775543 3466666667776666666544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-13 Score=134.37 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=119.3
Q ss_pred CcccEEEccCCCCCCCCCCchhhhc----cccccEEEeeccccccccchhh-hcccccceEeecCcccccccchhh----
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNL----SRNIQYLNLGFNSLQGSIPEAF-QLMVSLRFLYLTSNELEGGIPKFF---- 312 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~l---- 312 (524)
+.|++|++++|.++. .....+... .++|++|++++|.+++.....+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 678888888888754 222222222 2489999999999976544443 356789999999999986554444
Q ss_pred -cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC----CC-CCCCCCCcEEEccCCcCccc--
Q 009835 313 -GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL----PD-LGGFSSLKILVLGENRLNGT-- 384 (524)
Q Consensus 313 -~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~-~~~l~~L~~L~Ls~N~l~~~-- 384 (524)
...++|++|+|++|.+++.....+...- ...++|++|+|++|.+++.. .. +...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L--~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGL--AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHH--HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHH--hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 3568999999999999865444443210 12348999999999998643 22 66778999999999999864
Q ss_pred --cchhhhcCCCCCEEECcCCcCee
Q 009835 385 --IDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 385 --~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
+...+...++|++|||++|+++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 34456678999999999999874
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.2e-11 Score=119.06 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=62.8
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
..++.+.+..+... .....+..+..++.+....+.+. ...|..+.+|+.+.+..+ +..+....|..+. +
T Consensus 253 ~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~------~ 321 (394)
T 4fs7_A 253 TDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT------S 321 (394)
T ss_dssp SSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT------T
T ss_pred ccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCC------C
Confidence 34555555443322 22334444555555544443221 234555666666666543 4444444555443 6
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
|+.+++..+ ++.+... |.++.+|+.+++..+ ++.....+|.++++|+.+++..
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 666666543 4433333 666666666666655 4444455666666666666643
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=121.03 Aligned_cols=99 Identities=26% Similarity=0.251 Sum_probs=85.9
Q ss_pred cceeecCccccCCCCCCEEEccC-CCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCC
Q 009835 102 VLKGTISPALLKLHDLRHLDLSN-NHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLG 180 (524)
Q Consensus 102 ~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (524)
.++ .+|. +..+++|++|+|++ |.+++. .+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++..++
T Consensus 20 ~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALD-SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCT-TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCC-ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 344 3788 99999999999996 999986 6688999999999999999999999999999999999999999999766
Q ss_pred CchhcCCCCCCcEEEccCCCCCCCC
Q 009835 181 SLQWLSHLSSLRHLDLSYINLTKSS 205 (524)
Q Consensus 181 ~~~~~~~l~~L~~L~Ls~n~l~~~~ 205 (524)
. ..+..++ |++|+|.+|.+....
T Consensus 97 ~-~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 97 W-KTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp S-TTTCSCC-CCEEECCSSCCCCCG
T ss_pred H-HHcccCC-ceEEEeeCCCccCCC
Confidence 4 4455565 999999999988653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=122.56 Aligned_cols=103 Identities=20% Similarity=0.152 Sum_probs=70.3
Q ss_pred EEEeecc-ccccccchhhhcccccceEeecC-cccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCcc
Q 009835 272 YLNLGFN-SLQGSIPEAFQLMVSLRFLYLTS-NELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 272 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~ 349 (524)
.++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|+|++..+..|..++ +|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~------~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP------RLS 83 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS------CCC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc------CCC
Confidence 4566666 666 3666 77777777777775 777766666777777777777777777777766666655 677
Q ss_pred EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCcc
Q 009835 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNG 383 (524)
Q Consensus 350 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 383 (524)
.|+|++|++++.++. +..++ |+.|+|.+|.+..
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777777777766555 33333 7777777776653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.3e-10 Score=112.10 Aligned_cols=268 Identities=13% Similarity=0.065 Sum_probs=158.3
Q ss_pred CccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCC-------
Q 009835 108 SPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLG------- 180 (524)
Q Consensus 108 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~------- 180 (524)
..+|.++.+|+.+.|..+ ++.. -..+|.++.+|+.+++.. .+......+|.++.+|+.+.+..+ +..++
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPD-SVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCC-CceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 345666777777777533 4443 345666777777777753 344444455666666666555432 11111
Q ss_pred --------------CchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccE
Q 009835 181 --------------SLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIET 246 (524)
Q Consensus 181 --------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 246 (524)
....|.++++|+.+.+.++. ..+. ...+.++.+|+.+.+..+ +...... .+..+ ..|+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~--~~~F~~c~~L~~i~l~~~-~~~I~~~--~F~~~-~~L~~ 212 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLH--NGLFSGCGKLKSIKLPRN-LKIIRDY--CFAEC-ILLEN 212 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEEC--TTTTTTCTTCCBCCCCTT-CCEECTT--TTTTC-TTCCB
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-ceec--cccccCCCCceEEEcCCC-ceEeCch--hhccc-cccce
Confidence 11346666777777765442 2222 235666677777666554 2222221 22223 66666
Q ss_pred EEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCC
Q 009835 247 LDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 247 L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
+.+..+.. .+....+... +|+.+.+... ++......+..+..|+.+.+..+... .....|..+..++.+....+
T Consensus 213 i~~~~~~~---~i~~~~~~~~-~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 213 MEFPNSLY---YLGDFALSKT-GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CCCCTTCC---EECTTTTTTC-CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred eecCCCce---EeehhhcccC-CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 66655432 2223333333 6777777543 22233446677788888888776544 55567778888888877765
Q ss_pred CCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCC
Q 009835 327 KLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403 (524)
Q Consensus 327 ~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 403 (524)
.+. ...|..+ .+|+.+.+..+ ++.+... |.++.+|+.+++.++ ++.....+|.++.+|+.+++..|
T Consensus 287 ~i~---~~~F~~~------~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 287 IVP---EKTFYGC------SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EEC---TTTTTTC------TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eec---ccccccc------ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 432 2334443 38899988765 5444444 888999999999754 66566778889999999988766
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-09 Score=107.25 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=80.2
Q ss_pred chhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC
Q 009835 285 PEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 285 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
..+|..+.+|+.+.+.++... ....+|.++++|+.+.+. +.++......|..+. +|+.+++..+ ++.+...
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~------~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCI------SLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT------TCCEEECCTT-CCEECTT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCC------CcCEEEeCCc-ccEehHh
Confidence 446777888888888765443 555678888888888886 445556666676655 8889988764 4444443
Q ss_pred -CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCc
Q 009835 365 -LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNS 404 (524)
Q Consensus 365 -~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 404 (524)
|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.+|.
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 888899999998654 665667788889999999888774
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-09 Score=106.60 Aligned_cols=278 Identities=13% Similarity=0.130 Sum_probs=162.9
Q ss_pred ceeecCccccCCCCCCEEEccCCC---CCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCC
Q 009835 103 LKGTISPALLKLHDLRHLDLSNNH---FGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSL 179 (524)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (524)
++..-..+|.++++|+.+.+..|. ++.. -..+|..+.+|+.+.+. +.+......+|.++.+|+.+.+..+ +..+
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~-~~~~~I~~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPIL-DSVTEIDSEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGG-TTCSEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEe-chhhchhcccceeeccC-Cccceehhhhhhhhcccccccccce-eeee
Confidence 444445567788888888887653 3332 34567777777777776 3355555566777888888887643 2223
Q ss_pred CCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCC-----
Q 009835 180 GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL----- 254 (524)
Q Consensus 180 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l----- 254 (524)
+. ..|..+.+|+.+.+..+ +..+.. .++. ..+|+.+.+..+... .... .+..+ ..++......+..
T Consensus 152 ~~-~~F~~c~~L~~i~~~~~-~~~I~~--~aF~-~~~l~~i~ip~~~~~-i~~~--af~~c-~~l~~~~~~~~~~~~~~~ 222 (394)
T 4gt6_A 152 AD-GMFSYCYSLHTVTLPDS-VTAIEE--RAFT-GTALTQIHIPAKVTR-IGTN--AFSEC-FALSTITSDSESYPAIDN 222 (394)
T ss_dssp CT-TTTTTCTTCCEEECCTT-CCEECT--TTTT-TCCCSEEEECTTCCE-ECTT--TTTTC-TTCCEEEECCSSSCBSSS
T ss_pred cc-cceecccccccccccce-eeEecc--cccc-ccceeEEEECCcccc-cccc--hhhhc-cccceecccccccccccc
Confidence 32 45667777777777554 222211 1232 234555555432110 0000 01111 2222222111100
Q ss_pred ----------------------CC-------CCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 255 ----------------------PS-------SSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 255 ----------------------~~-------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
.. ..+....+..+..|+.+.+.++... .....|.++++|+.+.+.. .++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~ 300 (394)
T 4gt6_A 223 VLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT 300 (394)
T ss_dssp CEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC
T ss_pred eeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc
Confidence 00 1222344555568888888765443 4556788899999999964 456
Q ss_pred cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccc
Q 009835 306 GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 306 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 384 (524)
.....+|.++.+|+.++|..+ ++.+...+|..+. +|+.+.+..+ ++.+... |.++++|+.+++.++...
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~------~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-- 370 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE------QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-- 370 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT------TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC------CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--
Confidence 566678999999999999865 6666667787765 8999999765 5544444 999999999999988643
Q ss_pred cchhhhcCCCCCEEECcCCcC
Q 009835 385 IDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 385 ~p~~~~~l~~L~~L~l~~N~l 405 (524)
...+.....|+.+.+..|.+
T Consensus 371 -~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 371 -WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -HHTCBCCCCC----------
T ss_pred -hhhhhccCCCCEEEeCCCCE
Confidence 24567778899888876654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=108.02 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=78.7
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh--cccccceEeecC--cccccc-----cchhh
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ--LMVSLRFLYLTS--NELEGG-----IPKFF 312 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~--n~l~~~-----~p~~l 312 (524)
++|+.|++++|.- ..+++ + . .++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +...+
T Consensus 172 P~L~~L~L~g~~~--l~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 172 PLLNNLKIKGTNN--LSIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TTCCEEEEECCBT--CBCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCcEEEEeCCCC--ceecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 5666666665521 12222 1 2 23677777776666544333443 567777777642 111111 11122
Q ss_pred --cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC----CC-CCCCCCCcEEEccCCcCcccc
Q 009835 313 --GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL----PD-LGGFSSLKILVLGENRLNGTI 385 (524)
Q Consensus 313 --~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~-~~~l~~L~~L~Ls~N~l~~~~ 385 (524)
..+++|++|+|++|.+.+..+..+...+ .+++|++|+|+.|.+++.. +. +..+++|+.|+|++|.++...
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~---~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESD---ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCS---SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCc---cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 2467788888877777655444444321 2346666666666665431 11 244566666666666665433
Q ss_pred chhhhc-CCCCCEEECcCCc
Q 009835 386 DKSLSQ-LLKLESLSLGRNS 404 (524)
Q Consensus 386 p~~~~~-l~~L~~L~l~~N~ 404 (524)
-..+.. + ...+++++|+
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 2 2345555554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-09 Score=105.39 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=98.8
Q ss_pred hhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhc--CCCCCCEEEccC--CCCC-CchhHHH
Q 009835 262 WLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFG--KMCSLNRLCLPY--NKLS-GDLSEMI 336 (524)
Q Consensus 262 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~--n~l~-~~~~~~~ 336 (524)
.+...+|+|+.|++++|.-. .++. + .+++|+.|++..+.+.......+. .+|+|++|+|+. |... +.....+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44455569999999988311 2333 3 378999999999988765555554 789999999864 2221 1112222
Q ss_pred HhccCCCCCCCccEEEcCCCCCccCCCC----CCCCCCCcEEEccCCcCccc----cchhhhcCCCCCEEECcCCcCee
Q 009835 337 QNLSGGCTMNSLEGVCLEGNDITGPLPD----LGGFSSLKILVLGENRLNGT----IDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 337 ~~l~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
..+.....+++|+.|+|++|.+++..+. ...+++|++|+|+.|.+.+. ++..+.++++|+.|++++|.++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 2222223467999999999998753321 24688999999999999874 34445678999999999998763
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-07 Score=91.56 Aligned_cols=285 Identities=11% Similarity=0.047 Sum_probs=163.7
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.++.+.+.. .++..-..+|.+|.+|+.++|..+ ++.. -..+|.++ +|+.+.+. +++......+|.+.
T Consensus 47 ~i~~v~ip~---------~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~-~~l~~I~~~aF~~~ 113 (379)
T 4h09_A 47 RISEVRVNS---------GITSIGEANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGM-ERVKKFGDYVFQGT 113 (379)
T ss_dssp GCSEEEECT---------TEEEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEEC-TTCCEECTTTTTTC
T ss_pred CCEEEEeCC---------CccChHHHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECC-ceeeEeccceeccC
Confidence 466666665 566555667888888998888654 5543 34567666 67777776 33444444556554
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc---------
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS--------- 234 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------- 234 (524)
+|+.+++..+- ..++. ..|.++ +|+.+.+..+ ++... ...+..+.+++.+.+..+.........
T Consensus 114 -~L~~i~lp~~~-~~i~~-~~F~~~-~l~~~~~~~~-v~~i~--~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (379)
T 4h09_A 114 -DLDDFEFPGAT-TEIGN-YIFYNS-SVKRIVIPKS-VTTIK--DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI 186 (379)
T ss_dssp -CCSEEECCTTC-CEECT-TTTTTC-CCCEEEECTT-CCEEC--SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred -CcccccCCCcc-ccccc-cccccc-eeeeeeccce-eeccc--cchhcccccccccccccccceeecccceecccccce
Confidence 78888887543 22222 334443 4555555433 22222 135566677777776554322111000
Q ss_pred -hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhc
Q 009835 235 -IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFG 313 (524)
Q Consensus 235 -~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 313 (524)
...... ..+..+.+....- .+....+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....+|.
T Consensus 187 ~~~~~~~-~~~~~~~~~~~~~---~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~ 260 (379)
T 4h09_A 187 LESYPAA-KTGTEFTIPSTVK---TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ 260 (379)
T ss_dssp EEECCTT-CCCSEEECCTTCC---EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred ecccccc-cccccccccccee---EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence 000111 3333343333221 222333334446777776544 33234456667777888887665 4445556677
Q ss_pred CCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcC
Q 009835 314 KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQL 392 (524)
Q Consensus 314 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 392 (524)
++.+|+.+.+..+ +.......|..+. +|+.+.+.++.++.+... |.++.+|+.+.|..+ ++..-..+|.++
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCS------NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCT------TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred eeehhcccccccc-ceecccccccccc------ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 7788888887654 4444445555544 788888877777755554 778888888888654 554555677778
Q ss_pred CCCCEEECcC
Q 009835 393 LKLESLSLGR 402 (524)
Q Consensus 393 ~~L~~L~l~~ 402 (524)
.+|+.+.+..
T Consensus 333 ~~L~~i~ip~ 342 (379)
T 4h09_A 333 KALSTISYPK 342 (379)
T ss_dssp TTCCCCCCCT
T ss_pred CCCCEEEECC
Confidence 8887776644
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5.8e-10 Score=104.76 Aligned_cols=64 Identities=27% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCCCCEEEccCCCCCc--cCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCC
Q 009835 138 SLSRLRYLNLSCGTSLL--KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLT 202 (524)
Q Consensus 138 ~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 202 (524)
++++|++|+|++|.+.+ .+|..+..+++|++|+|++|.+.+......+..+ +|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 35556666666665555 3344445555566666665555544333333333 5555555555554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-08 Score=89.37 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=67.5
Q ss_pred hhhcccccceEeecCc-ccccc----cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccC
Q 009835 287 AFQLMVSLRFLYLTSN-ELEGG----IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGP 361 (524)
Q Consensus 287 ~~~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~ 361 (524)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+.+.....+...- ...++|++|+|++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L--~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML--KVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH--HHCSSCCEEECCSSCCCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH--HhCCCcCEEECcCCcCCHH
Confidence 3444555666666665 55422 233444556666666666666544333332210 0122566666666666542
Q ss_pred C-----CCCCCCCCCcEEEc--cCCcCccc----cchhhhcCCCCCEEECcCCcCe
Q 009835 362 L-----PDLGGFSSLKILVL--GENRLNGT----IDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 362 ~-----~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
. ..+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 12555677888888 77887654 3345566678888888888765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.8e-09 Score=93.09 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=73.6
Q ss_pred ceeecCccccCCCCCCEEEccCC-CCCCCC---CccccCCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCC
Q 009835 103 LKGTISPALLKLHDLRHLDLSNN-HFGGSP---LPEFIGSLSRLRYLNLSCGTSLLK----VPRPFQYLSGLVYLHLENS 174 (524)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~p~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n 174 (524)
+...+...+...+.|++|+|++| .+.... +...+...++|++|+|++|.+... +.+.+...++|++|+|++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 33445556777888888888888 776531 334556677888888888877642 2334455567777777777
Q ss_pred CCCCCCC---chhcCCCCCCcEEEc--cCCCCCCC--CCchHhhhcccCCCEEEeeCCCC
Q 009835 175 NLFSLGS---LQWLSHLSSLRHLDL--SYINLTKS--SDWFQVVAKLRSLKTLVLHSCAL 227 (524)
Q Consensus 175 ~l~~~~~---~~~~~~l~~L~~L~L--s~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l 227 (524)
.+...+. ...+...++|++|+| ++|.+... ..+...+...++|++|++++|.+
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 7663221 133445566666666 55665543 11223344445555555555543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.9e-06 Score=81.04 Aligned_cols=277 Identities=7% Similarity=0.034 Sum_probs=172.7
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..++.++|.. .++..-..+|..+ +|+.+.+..+ +... -..+|... +|+.+++..+ +.......|.+
T Consensus 69 ~~L~~I~lp~---------~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I-~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~ 134 (379)
T 4h09_A 69 YNMTKVTVAS---------TVTSIGDGAFADT-KLQSYTGMER-VKKF-GDYVFQGT-DLDDFEFPGA-TTEIGNYIFYN 134 (379)
T ss_dssp TTCCEEEECT---------TCCEECTTTTTTC-CCCEEEECTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTT
T ss_pred CCCCEEEeCC---------cceEechhhhcCC-CCceEECCce-eeEe-ccceeccC-CcccccCCCc-ccccccccccc
Confidence 3567777755 3454445567676 6888877654 4332 23455554 7999999743 44444455655
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCC----------chHhhhcccCCCEEEeeCCCCCCCCC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD----------WFQVVAKLRSLKTLVLHSCALPPINP 232 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~~l~~l~~L~~L~L~~n~l~~~~~ 232 (524)
. +|+.+.+..+ ++.+.. ..+..+.+++.+.+..+....... ....+.....+..+.+...... ...
T Consensus 135 ~-~l~~~~~~~~-v~~i~~-~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~ 210 (379)
T 4h09_A 135 S-SVKRIVIPKS-VTTIKD-GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTA 210 (379)
T ss_dssp C-CCCEEEECTT-CCEECS-CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECT
T ss_pred c-eeeeeeccce-eecccc-chhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eee
Confidence 4 5666666543 332332 457778888888776554322110 0112333444555554433211 111
Q ss_pred CchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhh
Q 009835 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFF 312 (524)
Q Consensus 233 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 312 (524)
..+.....|+.+.+..+- ..+....+.....|+.+.+..+ ++......+.++.+|+.+.+..+ +.......|
T Consensus 211 ---~~f~~~~~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 211 ---YGFSYGKNLKKITITSGV---TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp ---TTTTTCSSCSEEECCTTC---CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred ---cccccccccceeeeccce---eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence 122223788888886553 2444555555568999998765 55455567888899999998754 554556688
Q ss_pred cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhc
Q 009835 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQ 391 (524)
Q Consensus 313 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 391 (524)
.++++|+.+.+.++.++......|..+. +|+.+.|..+ ++.+... |.++.+|+.+.+..+ ++..-..+|.+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~------~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCV------KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCT------TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred ccccccccccccccccceehhhhhcCCC------CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 8999999999998888877778887765 8999999765 5544444 899999999988655 55444556665
Q ss_pred CC
Q 009835 392 LL 393 (524)
Q Consensus 392 l~ 393 (524)
+.
T Consensus 355 c~ 356 (379)
T 4h09_A 355 SS 356 (379)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-07 Score=89.22 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=39.4
Q ss_pred CCCCCCEEEccCCCCCCc--hhHHHHhccCCCCCCCccEEEcCCCCCccCC--CCCCCCCCCcEEEccCCcCccccc---
Q 009835 314 KMCSLNRLCLPYNKLSGD--LSEMIQNLSGGCTMNSLEGVCLEGNDITGPL--PDLGGFSSLKILVLGENRLNGTID--- 386 (524)
Q Consensus 314 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p--- 386 (524)
.+++|+.|+|++|.+++. ++..+..++ +|+.|+|++|++++.. ..+..+ +|++|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~------~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAP------NLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHST------TCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCC------CCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcch
Confidence 344555555555555442 223333333 5555555555554431 112223 66666777666665443
Q ss_pred ----hhhhcCCCCCEEE
Q 009835 387 ----KSLSQLLKLESLS 399 (524)
Q Consensus 387 ----~~~~~l~~L~~L~ 399 (524)
..+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 2355667776665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=75.29 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCC-CCccCCccccCC----CCCcEEEccCCC-CCCCCCchhcCCC
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGT-SLLKVPRPFQYL----SGLVYLHLENSN-LFSLGSLQWLSHL 188 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~l 188 (524)
..|++||++++.+++. --..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. +++.+ ...+..+
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence 4677777777777665 33445667777777777664 443322333433 246666666553 43221 2334445
Q ss_pred CCCcEEEccCC
Q 009835 189 SSLRHLDLSYI 199 (524)
Q Consensus 189 ~~L~~L~Ls~n 199 (524)
++|++|+++++
T Consensus 139 ~~L~~L~L~~c 149 (176)
T 3e4g_A 139 RNLKYLFLSDL 149 (176)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEECCCC
Confidence 55555555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-06 Score=73.77 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=6.0
Q ss_pred CCCCCcEEEccCC
Q 009835 367 GFSSLKILVLGEN 379 (524)
Q Consensus 367 ~l~~L~~L~Ls~N 379 (524)
.+++|+.|+|+++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3444444444444
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.4e-05 Score=69.37 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=45.4
Q ss_pred hhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC-----CCCCCCCCcEEEccCC---cCc
Q 009835 311 FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP-----DLGGFSSLKILVLGEN---RLN 382 (524)
Q Consensus 311 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~-----~~~~l~~L~~L~Ls~N---~l~ 382 (524)
.+..-+.|+.|+|++|.+.+.....++..- ...+.|++|+|+.|.|+.... .+..-+.|++|+|++| .+.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL--~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELI--ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHH--HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHH--hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 344444555555555555433322222110 011245555555555543211 1444556777777654 333
Q ss_pred c----ccchhhhcCCCCCEEECcCCcC
Q 009835 383 G----TIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 383 ~----~~p~~~~~l~~L~~L~l~~N~l 405 (524)
. .+...+...+.|+.|+++.|..
T Consensus 143 ~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 143 NQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2 1344566677888888876653
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=5.9e-05 Score=66.87 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred cccEEEeecc-ccccc----cchhhhcccccceEeecCccccc----ccchhhcCCCCCCEEEccCCCCCCchhHHHHhc
Q 009835 269 NIQYLNLGFN-SLQGS----IPEAFQLMVSLRFLYLTSNELEG----GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNL 339 (524)
Q Consensus 269 ~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 339 (524)
.|++|+|++| .+... +.+.+..-+.|+.|+|++|.+.. .+...+...+.|++|+|++|.|++.....+...
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 5566666553 44422 23334445566666666666653 233444455667777777777765555444432
Q ss_pred cCCCCCCCccEEEcCCCC---CccC----CC-CCCCCCCCcEEEccCCcCc
Q 009835 340 SGGCTMNSLEGVCLEGND---ITGP----LP-DLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 340 ~~~~~~~~L~~L~Ls~n~---l~~~----~~-~~~~l~~L~~L~Ls~N~l~ 382 (524)
+...+.|++|+|++|. +... +. .+..-++|+.|+++.|.+.
T Consensus 122 --L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 122 --TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp --TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred --HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1233457777776542 2221 11 1445567778888766543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0015 Score=53.81 Aligned_cols=60 Identities=22% Similarity=0.127 Sum_probs=47.0
Q ss_pred cEEEcCCCCCc--cCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 349 EGVCLEGNDIT--GPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 349 ~~L~Ls~n~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
..++.+++.++ .++..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 46777777776 443332 2468999999999997777788899999999999999987665
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0061 Score=50.15 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=26.1
Q ss_pred EEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCC
Q 009835 119 HLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176 (524)
Q Consensus 119 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (524)
.++.+++.++...+|..+. ++|++|+|++|.++...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554101343221 2455555555555544444455555555555555443
|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.59 E-value=0.2 Score=31.80 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=15.0
Q ss_pred eehhhHHHHHHHHHHHHhhhhcccccc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNRSWR 494 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
++.+++.|+++++++++++++|.||++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 555556556665555555555555443
|
| >2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.95 E-value=0.2 Score=31.82 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=14.3
Q ss_pred eehhhHHHHHHHHHHHHhhhhcccccc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNRSWR 494 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
++.+++.|+++++++++++++|.||++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 455555555555555555555555443
|
| >2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A | Back alignment and structure |
|---|
Probab=85.91 E-value=0.27 Score=31.09 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=13.4
Q ss_pred eehhhHHHHHHHHHHHHhhhhccccc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNRSW 493 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.+++.++|+++++++.+++++|.||+
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhheehh
Confidence 45556666554444444545554444
|
| >2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.47 E-value=0.52 Score=27.53 Aligned_cols=28 Identities=32% Similarity=0.467 Sum_probs=19.4
Q ss_pred eehhhHHHHHHHHHHHHhhhhcccccch
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNRSWRH 495 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
..+..++|+++++..+.+.|+|+|.+|+
T Consensus 8 malt~i~gl~vif~~lg~tflywrgrrh 35 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCceeEEEccccc
Confidence 4455677777777777788888775553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 524 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-21 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 7e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 9e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 93.7 bits (231), Expect = 1e-21
Identities = 83/403 (20%), Positives = 134/403 (33%), Gaps = 98/403 (24%)
Query: 36 CIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCC--KWRGVRCSNKTGHVKVLNLRRS 93
C ++++ALL K+ L + LSSW DCC W GV C T +V
Sbjct: 3 CNPQDKQALLQIKKDLGNP-TTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRV------ 52
Query: 94 DDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGS-PLPEFIGSLSRLRYLNLSCGTS 152
+LDLS + P+P + +L L +L + +
Sbjct: 53 ------------------------NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 153 LLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVA 212
L+ P + L Y+ +T ++ +
Sbjct: 89 LVGPIPPAIA-----------------------------KLTQLHYLYITHTNVSGAIPD 119
Query: 213 KLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQY 272
L +KTLV + ++ + + ++ + N + S ++ + S+
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTS 178
Query: 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL 332
+ + N L G IP F + G L K+
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDL--------SRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 333 SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQL 392
+ + +L +L G+ L N I G LP L+QL
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-----------------------GLTQL 267
Query: 393 LKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLP 435
L SL++ N+ G+IP G LQ F+ S YA N LCG PLP
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.6 bits (174), Expect = 2e-14
Identities = 48/294 (16%), Positives = 86/294 (29%), Gaps = 29/294 (9%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSN 175
D LDL NN +L L L L P F L L L+L +
Sbjct: 32 DTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSI 235
L L + + L + +TK + L + I +
Sbjct: 91 LKELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146
Query: 236 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLR 295
+ + ++D N+ + L ++ L+L N + + + + +L
Sbjct: 147 QGM---KKLSYIRIADTNITTIP-----QGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198
Query: 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEG 355
L L+ N + L L L NKL + ++ V L
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-------ADHKYIQVVYLHN 251
Query: 356 NDITG-------PLPDLGGFSSLKILVLGENRLNGT--IDKSLSQLLKLESLSL 400
N+I+ P +S + L N + + + ++ L
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.5 bits (140), Expect = 5e-10
Identities = 45/212 (21%), Positives = 70/212 (33%), Gaps = 21/212 (9%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
+L LDL +N + + + F +N+ L L N + P AF +V L LY
Sbjct: 28 DLPPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85
Query: 299 LTSNELEGGIPKFFGKMCSLNRLCLPYNKL-----------------SGDLSEMIQNLSG 341
L+ N+L+ K + L K+ + L
Sbjct: 86 LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145
Query: 342 GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401
M L + + +IT L SL L L N++ SL L L L L
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203
Query: 402 RNSFTGKIPLGTQLQSFNASVYAGNPELCGLP 433
NS + ++ N +L +P
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 71.6 bits (174), Expect = 4e-14
Identities = 57/332 (17%), Positives = 113/332 (34%), Gaps = 37/332 (11%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLE 172
L++L ++ SNN + +L++L + ++ P + L
Sbjct: 64 YLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120
Query: 173 NSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL------RSLKTLVLHSCA 226
+ L +S I+ Q ++ + L L
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180
Query: 227 LPPINPSSIWHFNLS-TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP 285
N S T++E+L ++N + + L NL L+L N L+
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL----DELSLNGNQLKD--I 234
Query: 286 EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEM---------- 335
+ +L L L +N++ P + L L L N++S
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292
Query: 336 ----IQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQ 391
++++S + +L + L N+I+ P + + L+ L N+++ SL+
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV--SSLAN 349
Query: 392 LLKLESLSLGRNSFTGKIPLG--TQLQSFNAS 421
L + LS G N + PL T++ +
Sbjct: 350 LTNINWLSAGHNQISDLTPLANLTRITQLGLN 381
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 52.3 bits (124), Expect = 7e-08
Identities = 43/249 (17%), Positives = 88/249 (35%), Gaps = 10/249 (4%)
Query: 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 222
L + L + + S+ ++ +L++L ++ S LT + + L L +++
Sbjct: 43 LDQVTTLQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDITP----LKNLTKLVDILM 95
Query: 223 HSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG 282
++ + I P + ++ ++D + + LS N + L
Sbjct: 96 NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155
Query: 283 SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGG 342
+F V+ LE L + + I +++
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 215
Query: 343 CTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402
+ +L+ + L GN + L ++L L L N+++ LS L KL L LG
Sbjct: 216 GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGA 272
Query: 403 NSFTGKIPL 411
N + PL
Sbjct: 273 NQISNISPL 281
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 8e-06
Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 35/164 (21%)
Query: 109 PALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP----------- 157
L L +L LDL+NN + L++L L L P
Sbjct: 235 GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291
Query: 158 ---------RPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWF 208
P L L YL L +N+ + +S L+ L+ L + ++ S
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFANNKVSDVSS-- 346
Query: 209 QVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDN 252
+A L ++ L + S + T I L L+D
Sbjct: 347 --LANLTNINWLSAGHNQI-----SDLTPLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLH 170
+ L L L + I +L L YL L + + P L+ L L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF--NNISDISPVSSLTKLQRLF 335
Query: 171 LENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226
N+ + + L++L+++ L + ++ + +A L + L L+ A
Sbjct: 336 FANNK---VSDVSSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQA 384
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 2e-10
Identities = 52/269 (19%), Positives = 82/269 (30%), Gaps = 17/269 (6%)
Query: 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENS 174
+ + L N P + L L L F L+ L L L ++
Sbjct: 32 AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 175 NLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234
L L L L L + + L +L+ L L AL + +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 235 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSL 294
++ L L N + SV F ++ L L N + P AF+ + L
Sbjct: 149 FRDLG---NLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203
Query: 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354
LYL +N L + + +L L L N D L+
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-------WAWLQKFRGS 256
Query: 355 GNDITGPLPDLGGFSSLKILVLGENRLNG 383
+++ LP + + L N L G
Sbjct: 257 SSEVPCSLPQ--RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 2e-08
Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 15/247 (6%)
Query: 189 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247
++ + + L ++ + F+ L + ++
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLT-------ILWLHSNVLARIDAAAFTGLALLEQ 84
Query: 248 DLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG 307
+N SV P F+ + L+L LQ P F+ + +L++LYL N L+
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
Query: 308 IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LG 366
F + +L L L N++S + L SL+ + L N + P
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH------SLDRLLLHQNRVAHVHPHAFR 198
Query: 367 GFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGN 426
L L L N L+ ++L+ L L+ L L N + + +
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258
Query: 427 PELCGLP 433
C LP
Sbjct: 259 EVPCSLP 265
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 2e-05
Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 10/174 (5%)
Query: 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLY 298
+ + + + L N + S V F RN+ L L N L AF + L L
Sbjct: 29 GIPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86
Query: 299 LTSNELEGGI-PKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357
L+ N + P F + L+ L L + +L+ + L+ N
Sbjct: 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCG------LQELGPGLFRGLAALQYLYLQDNA 140
Query: 358 ITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410
+ D +L L L NR++ +++ L L+ L L +N P
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 55.3 bits (131), Expect = 7e-09
Identities = 42/312 (13%), Positives = 83/312 (26%), Gaps = 24/312 (7%)
Query: 107 ISPALLKLHDLRHLDLSNNHFGG---SPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163
+ LL+ ++ + LS N G L E I S L S + + L
Sbjct: 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82
Query: 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLH 223
L+ L+ L ++ ++ L T + L +
Sbjct: 83 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142
Query: 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSS-----------VYPWLFNLSRNIQY 272
+ + ++ N L + S + +N
Sbjct: 143 RALQELAVN---KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 199
Query: 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL 332
+ L + +L V ++ + +L L L LS
Sbjct: 200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 259
Query: 333 SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD------LGGFSSLKILVLGENRLNGTID 386
+ + + L+ + L+ N+I L L L NR D
Sbjct: 260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEED 318
Query: 387 KSLSQLLKLESL 398
+ ++ ++ S
Sbjct: 319 DVVDEIREVFST 330
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 1e-08
Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 6/262 (2%)
Query: 73 WRGVRCSNKTGHVKVLN--LRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGS 130
W+ + + K H V L + ++H+DLSN+ S
Sbjct: 2 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 131 PLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL-HLENSNLFSLGSLQWLSHLS 189
L + S+L+ L+L + S LV L S LS S
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 190 SLRHLDLSYIN-LTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLD 248
L L+LS+ T+ V ++ L L ++ LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181
Query: 249 LSDNNLPSSSVYPWLFNLSRNIQYLNL-GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG 307
LSD+ + + + F +Q+L+L + + +L+ L + +G
Sbjct: 182 LSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 308 IPKFFGKMCSLNRLCLPYNKLS 329
+ + L C + ++
Sbjct: 241 LQLLKEALPHLQINCSHFTTIA 262
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 4e-08
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
T+ L +L + HLDLS+N P + +L L L S + L
Sbjct: 11 TVLCHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNAL--ENVDGVANLPR 66
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLV 221
L L L N+ L ++Q L L L+L +L + ++ L S+ +++
Sbjct: 67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.5 bits (107), Expect = 1e-06
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCAL 227
LHL + +L L L L + HLDLS+ L + L L+ +
Sbjct: 2 VLHLAHKDLTVLCHL---EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSL---QGSI 284
+ ++ L L +N L S+ L + + LNL NSL +G
Sbjct: 59 DGVANLPR--------LQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQEEGIQ 109
Query: 285 PEAFQLMVSLRFL 297
+++ S+ +
Sbjct: 110 ERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 4e-04
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 16/133 (12%)
Query: 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG 330
+ L+L L ++ + ++ + L L+ N L P + L L N
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN---- 53
Query: 331 DLSEMIQNLSGGCTMNSLEGVCLEGNDITG--PLPDLGGFSSLKILVLGENRL---NGTI 385
++N+ G + L+ + L N + + L L +L L N L G
Sbjct: 54 ----ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109
Query: 386 DKSLSQLLKLESL 398
++ L + S+
Sbjct: 110 ERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 11/124 (8%)
Query: 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354
R L+L +L + ++ + L L +N+L + L + + +
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNAL-- 55
Query: 355 GNDITGPLPDLGGFSSLKILVLGENRLNGTID-KSLSQLLKLESLSLGRNSFTGKIPLGT 413
+ + L+ L+L NRL + + L +L L+L NS + +
Sbjct: 56 -----ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110
Query: 414 QLQS 417
+L
Sbjct: 111 RLAE 114
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (108), Expect = 5e-06
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG----SIPEAFQLMVSLRF 296
S I++LD+ L S + + L L + Q + L L I A ++ +L
Sbjct: 1 SLDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG 330
L L SNEL + + L
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (104), Expect = 1e-05
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC----GTSLLKVPRPFQYLSGLVYLHL 171
D++ LD+ + E + L + + + L + + L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 172 ENSNLFSLGSLQWLSHLSS----LRHLDLSYIN 200
++ L +G L L + ++ L L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLH 223
+ L ++ L + L L + + L LT++ D + +L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 224 SCALPPINPSSIWH--FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQY 272
S L + + S I+ L L + L + L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 114
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (84), Expect = 0.004
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 9/126 (7%)
Query: 223 HSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG 282
+ A S + ++ + + + L ++ L L +
Sbjct: 324 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 383
Query: 283 ----SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGK-----MCSLNRLCLPYNKLSGDLS 333
S+ SLR L L++N L + C L +L L S ++
Sbjct: 384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443
Query: 334 EMIQNL 339
+ +Q L
Sbjct: 444 DRLQAL 449
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (106), Expect = 6e-06
Identities = 38/220 (17%), Positives = 66/220 (30%), Gaps = 18/220 (8%)
Query: 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLHL 171
K+ ++ + + LP + L+LS L + L L+L
Sbjct: 8 KVASHLEVNCDKRNL--TALPPDLPK--DTTILHLS-ENLLYTFSLATLMPYTRLTQLNL 62
Query: 172 ENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPIN 231
+ + L L L L +L +L + +
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL-----------TVLDVSFNR 111
Query: 232 PSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291
+S+ L E +L ++ P L + ++ L+L N+L +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331
+L L L N L IPK F L L N +
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 38/206 (18%), Positives = 63/206 (30%), Gaps = 21/206 (10%)
Query: 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLT 300
S ++ NL +++ P +L ++ L+L N L L L L
Sbjct: 9 VASHLEVNCDKRNL--TALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGG---------------CTM 345
EL + L + L + + L+ +
Sbjct: 64 RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 346 NSLEGVCLEGNDITGPLPDLGGFSSLKIL-VLGENRLNGTIDKSLSQLLKLESLSLGRNS 404
L+ + L+GN++ P L + L N L L+ L L++L L NS
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 405 FTGKIPLGTQLQSFNASVYAGNPELC 430
+ GNP LC
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWLC 209
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.6 bits (96), Expect = 9e-05
Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 25/227 (11%)
Query: 159 PFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 218
P L+ + + SN+ + + L + L +T V L +L
Sbjct: 14 PDPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTIEG----VQYLNNLI 66
Query: 219 TLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF- 277
L L + + P + L + + + +L+
Sbjct: 67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126
Query: 278 --------NSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329
I L YL+ + + L L NK+S
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186
Query: 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVL 376
+S ++ +L V L+ N I+ + L S+L I+ L
Sbjct: 187 D--------ISPLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTL 224
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Query: 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165
I L +D S+N L RL+ L ++ Q L
Sbjct: 32 VIENLGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88
Query: 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW-FQVVAKLRSLKTL 220
L L L N++L LG L L+ L SL +L + +T + V+ K+ ++ L
Sbjct: 89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288
+ +L S+E L++S+N L + L + L FN L +PE
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKL--IELPALPPRL----ERLIASFNHLA-EVPE-- 321
Query: 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLN 319
L +L+ L++ N L P + L
Sbjct: 322 -LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.0 bits (89), Expect = 0.001
Identities = 48/320 (15%), Positives = 84/320 (26%), Gaps = 22/320 (6%)
Query: 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176
L+L+N S LPE L L SC SL ++P Q L L+ + L
Sbjct: 40 AHELELNNLGL--SSLPELPPHL---ESLVASC-NSLTELPELPQSLKSLLVDNNNLKAL 93
Query: 177 FSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW 236
L L +S+ + L + + + +L P + +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQ-----NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148
Query: 237 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296
+ L E +L + + ++ + Q + L
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208
Query: 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG---DLSEMIQNLSGGCTMNSLEGVCL 353
+Y +N L+ R + + +
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268
Query: 354 EGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT 413
SL+ L + N+L + +LE L N L
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELPQ 324
Query: 414 QLQSFNASVYAGNPELCGLP 433
L+ + NP L P
Sbjct: 325 NLKQLHVE---YNP-LREFP 340
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.76 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.75 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.74 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.74 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.74 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.7 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.68 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.6 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.58 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.56 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.54 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.48 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.27 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.24 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.22 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.19 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.39 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.35 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.04 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.85 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.67 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.39 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=1.6e-41 Score=331.79 Aligned_cols=304 Identities=31% Similarity=0.487 Sum_probs=216.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc--ccceEeCCCC--CcEEEEEcCCCCCCCCCCCccee--ecC
Q 009835 35 RCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCK--WRGVRCSNKT--GHVKVLNLRRSDDENSRGTVLKG--TIS 108 (524)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~~--~~~ 108 (524)
-|.++|++||++||+++.+|. .+.+|. .+.|||. |.||+|+... .||+.|+|+++ .+.| .+|
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~--------~l~g~~~lp 69 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPIP 69 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC--------CCSSCEECC
T ss_pred CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC--------CCCCCCCCC
Confidence 499999999999999999874 688997 5789994 9999998643 48999999985 5555 678
Q ss_pred ccccCCCCCCEEEccC-CCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCC
Q 009835 109 PALLKLHDLRHLDLSN-NHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSH 187 (524)
Q Consensus 109 ~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 187 (524)
++++++++|++|+|++ |.+.+. +|..|+++++|++|+|++|++.+..+..+..+.+|+++++++|.+..
T Consensus 70 ~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~--------- 139 (313)
T d1ogqa_ 70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--------- 139 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES---------
T ss_pred hHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccc---------
Confidence 8888888888888886 677775 77777777777777777777776666656555555555555544331
Q ss_pred CCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcc
Q 009835 188 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 267 (524)
Q Consensus 188 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 267 (524)
.. +..+.++ +.++++++++|.+.+ .+|..+....
T Consensus 140 ----------------~~--p~~l~~l---------------------------~~L~~l~l~~n~l~~-~ip~~~~~l~ 173 (313)
T d1ogqa_ 140 ----------------TL--PPSISSL---------------------------PNLVGITFDGNRISG-AIPDSYGSFS 173 (313)
T ss_dssp ----------------CC--CGGGGGC---------------------------TTCCEEECCSSCCEE-ECCGGGGCCC
T ss_pred ----------------cC--chhhccC---------------------------cccceeecccccccc-cccccccccc
Confidence 10 1122232 333333333333333 3333333333
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
..++.+++++|++++..|..+..+..+ .++++++...+.+|..+..+++
T Consensus 174 ~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~------------------------------ 222 (313)
T d1ogqa_ 174 KLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKN------------------------------ 222 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSC------------------------------
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccc------------------------------
Confidence 234666666776666666555554333 4666666666555555555444
Q ss_pred ccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCC
Q 009835 348 LEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNP 427 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~ 427 (524)
++.+++++|.+.+.++.+..+++|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|....+..+....+.+|+
T Consensus 223 l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred ccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence 55555555555555555667889999999999999999999999999999999999999999988888899999999999
Q ss_pred CCCCCCCCCCC
Q 009835 428 ELCGLPLPNKC 438 (524)
Q Consensus 428 ~~C~~~~~~~c 438 (524)
.+||.|.+ .|
T Consensus 303 ~l~g~plp-~c 312 (313)
T d1ogqa_ 303 CLCGSPLP-AC 312 (313)
T ss_dssp EEESTTSS-CC
T ss_pred cccCCCCC-CC
Confidence 99998875 56
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=1.9e-25 Score=223.06 Aligned_cols=301 Identities=24% Similarity=0.314 Sum_probs=223.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..+++|+++++ +++. + +.+..+++|++|++++|++++ ++ .++++++|++|++++|.+.+.. .+++
T Consensus 44 ~~l~~L~l~~~--------~I~~-l-~gl~~L~nL~~L~Ls~N~l~~--l~-~l~~L~~L~~L~L~~n~i~~i~--~l~~ 108 (384)
T d2omza2 44 DQVTTLQADRL--------GIKS-I-DGVEYLNNLTQINFSNNQLTD--IT-PLKNLTKLVDILMNNNQIADIT--PLAN 108 (384)
T ss_dssp TTCCEEECCSS--------CCCC-C-TTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred CCCCEEECCCC--------CCCC-c-cccccCCCCCEEeCcCCcCCC--Cc-cccCCccccccccccccccccc--cccc
Confidence 46899999986 4432 2 357889999999999999998 44 3999999999999999998653 4889
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCC--------------------------------------
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS-------------------------------------- 204 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------------------------------- 204 (524)
+++|+.|+++++.+..... ......+..+....|.+...
T Consensus 109 l~~L~~L~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (384)
T d2omza2 109 LTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185 (384)
T ss_dssp CTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred ccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 9999999999998875443 22333333333332221111
Q ss_pred -CCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccc
Q 009835 205 -SDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS 283 (524)
Q Consensus 205 -~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 283 (524)
.........+++++.+++++|.+.+..+. ... ++|++|++++|.+.. .+.+... ++|+.|++++|.+++.
T Consensus 186 ~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~----~~~-~~L~~L~l~~n~l~~---~~~l~~l-~~L~~L~l~~n~l~~~ 256 (384)
T d2omza2 186 KVSDISVLAKLTNLESLIATNNQISDITPL----GIL-TNLDELSLNGNQLKD---IGTLASL-TNLTDLDLANNQISNL 256 (384)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCCGGG----GGC-TTCCEEECCSSCCCC---CGGGGGC-TTCSEEECCSSCCCCC
T ss_pred ccccccccccccccceeeccCCccCCCCcc----ccc-CCCCEEECCCCCCCC---cchhhcc-cccchhccccCccCCC
Confidence 00123567788999999999988876542 233 889999999998843 3444444 4899999999998865
Q ss_pred cchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC
Q 009835 284 IPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP 363 (524)
Q Consensus 284 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~ 363 (524)
.+ +..+++|++|++++|.+++.. .+..++.++.++++.|.+++.. .+..+ ++++.|++++|++++..
T Consensus 257 ~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~~~------~~l~~L~ls~n~l~~l~- 323 (384)
T d2omza2 257 AP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PISNL------KNLTYLTLYFNNISDIS- 323 (384)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGGGC------TTCSEEECCSSCCSCCG-
T ss_pred Cc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccchh------cccCeEECCCCCCCCCc-
Confidence 43 778899999999999988543 3678889999999999887643 24443 38999999999998754
Q ss_pred CCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCC
Q 009835 364 DLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGN 426 (524)
Q Consensus 364 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn 426 (524)
.+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..| ...+..+....+.+|
T Consensus 324 ~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 324 PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence 47888999999999999884 34 58889999999999999987655 344566666666655
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=1.2e-25 Score=217.48 Aligned_cols=223 Identities=22% Similarity=0.189 Sum_probs=146.8
Q ss_pred CcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCC
Q 009835 71 CKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCG 150 (524)
Q Consensus 71 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n 150 (524)
|.|.+|.|.+. .++ .+|..+. +++++|+|++|+++.. .+..|.++++|++|++++|
T Consensus 10 c~~~~~~C~~~--------------------~L~-~lP~~l~--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~l~~n 65 (305)
T d1xkua_ 10 CHLRVVQCSDL--------------------GLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINN 65 (305)
T ss_dssp EETTEEECTTS--------------------CCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSS
T ss_pred ecCCEEEecCC--------------------CCC-ccCCCCC--CCCCEEECcCCcCCCc-ChhHhhccccccccccccc
Confidence 67888888531 333 4565553 6899999999999884 3457999999999999999
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCC
Q 009835 151 TSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI 230 (524)
Q Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 230 (524)
.+....|..|.++++|++|++++|+++.++. .....++.|++.+|.+.... ...+.....+..++...+.....
T Consensus 66 ~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~----~~~~~l~~L~~~~n~l~~l~--~~~~~~~~~~~~l~~~~n~~~~~ 139 (305)
T d1xkua_ 66 KISKISPGAFAPLVKLERLYLSKNQLKELPE----KMPKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSS 139 (305)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSSCCSBCCS----SCCTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGG
T ss_pred cccccchhhhhCCCccCEecccCCccCcCcc----chhhhhhhhhccccchhhhh--hhhhhcccccccccccccccccc
Confidence 9998889999999999999999999987663 34568899999999888765 34566677777777776654332
Q ss_pred CCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccch
Q 009835 231 NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPK 310 (524)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 310 (524)
......+ ..+++|+.+++++|.+. .++..+ .++|+.|++++|..++..+..+..++.+++|++++|.+.+..+.
T Consensus 140 ~~~~~~~-~~l~~L~~l~l~~n~l~--~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~ 213 (305)
T d1xkua_ 140 GIENGAF-QGMKKLSYIRIADTNIT--TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213 (305)
T ss_dssp GBCTTGG-GGCTTCCEEECCSSCCC--SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred CCCcccc-ccccccCccccccCCcc--ccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc
Confidence 2211122 22256666666666652 233221 23555555555555555555555555555555555555544444
Q ss_pred hhcCCCCCCEEEccCCCCC
Q 009835 311 FFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 311 ~l~~l~~L~~L~Ls~n~l~ 329 (524)
.+.++++|++|+|++|.++
T Consensus 214 ~~~~l~~L~~L~L~~N~L~ 232 (305)
T d1xkua_ 214 SLANTPHLRELHLNNNKLV 232 (305)
T ss_dssp TGGGSTTCCEEECCSSCCS
T ss_pred cccccccceeeeccccccc
Confidence 5555555555555555444
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=1.6e-25 Score=223.62 Aligned_cols=293 Identities=22% Similarity=0.287 Sum_probs=222.5
Q ss_pred cceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCC
Q 009835 102 VLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGS 181 (524)
Q Consensus 102 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 181 (524)
.+++.+. ...+.+|++|+++++.++. + +.++.+++|++|++++|++++.. .++++++|++|++++|.+..+..
T Consensus 33 ~~~~~~~--~~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~ 105 (384)
T d2omza2 33 NVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP 105 (384)
T ss_dssp STTSEEC--HHHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCccC--HHHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc
Confidence 4455443 3467789999999999986 3 45788999999999999998754 39999999999999999986543
Q ss_pred chhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCC-----------------------------
Q 009835 182 LQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINP----------------------------- 232 (524)
Q Consensus 182 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----------------------------- 232 (524)
++++++|+.|+++++.+++... ......+..+....+.+.....
T Consensus 106 ---l~~l~~L~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (384)
T d2omza2 106 ---LANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178 (384)
T ss_dssp ---GTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCC
T ss_pred ---cccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccchhhhhccccccc
Confidence 8899999999999999887642 2233344444433322111000
Q ss_pred ---------CchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcc
Q 009835 233 ---------SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNE 303 (524)
Q Consensus 233 ---------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 303 (524)
........+++++.+++++|.+.+ +++ . ...++|++|++++|.+++ + ..+..+++|+.|++++|.
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~--~~~-~-~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~ 252 (384)
T d2omza2 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITP-L-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQ 252 (384)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGG-G-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC
T ss_pred cccccccccccccccccccccceeeccCCccCC--CCc-c-cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCc
Confidence 001122333899999999999854 333 2 334599999999999985 3 367889999999999999
Q ss_pred cccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcc
Q 009835 304 LEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNG 383 (524)
Q Consensus 304 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 383 (524)
+++..+ +..+++|++|++++|.+++..+ +.. ++.++.+++++|.+++. +.+..+++++.|++++|++++
T Consensus 253 l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~------~~~l~~l~~~~n~l~~~-~~~~~~~~l~~L~ls~n~l~~ 321 (384)
T d2omza2 253 ISNLAP--LSGLTKLTELKLGANQISNISP--LAG------LTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISD 321 (384)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT------CTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSC
T ss_pred cCCCCc--ccccccCCEeeccCcccCCCCc--ccc------ccccccccccccccccc-cccchhcccCeEECCCCCCCC
Confidence 986543 7889999999999999987643 334 34899999999999863 457889999999999999997
Q ss_pred ccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCC
Q 009835 384 TIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 384 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~ 428 (524)
.. .+..+++|++|++++|++++ +|....+..++...+.+|..
T Consensus 322 l~--~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l 363 (384)
T d2omza2 322 IS--PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQI 363 (384)
T ss_dssp CG--GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCC
T ss_pred Cc--ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcC
Confidence 54 38899999999999999985 55455567777888888764
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=7.3e-25 Score=211.88 Aligned_cols=269 Identities=20% Similarity=0.233 Sum_probs=212.2
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEE
Q 009835 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLD 195 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 195 (524)
.++.+|-++++++. +|..+. +.+++|+|++|+++...+.+|.++++|++|++++|.+..++. ..|.++++|++|+
T Consensus 11 ~~~~~~C~~~~L~~--lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~-~~f~~l~~L~~L~ 85 (305)
T d1xkua_ 11 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLY 85 (305)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEE
T ss_pred cCCEEEecCCCCCc--cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccch-hhhhCCCccCEec
Confidence 56788888888886 677663 689999999999987777789999999999999999986654 6689999999999
Q ss_pred ccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEe
Q 009835 196 LSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275 (524)
Q Consensus 196 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 275 (524)
+++|+++..+. .....++.|++..|.+....+ ..+.....+..++...|...........+...++|+.+++
T Consensus 86 l~~n~l~~l~~-----~~~~~l~~L~~~~n~l~~l~~---~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l 157 (305)
T d1xkua_ 86 LSKNQLKELPE-----KMPKTLQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 157 (305)
T ss_dssp CCSSCCSBCCS-----SCCTTCCEEECCSSCCCBBCH---HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred ccCCccCcCcc-----chhhhhhhhhccccchhhhhh---hhhhccccccccccccccccccCCCccccccccccCcccc
Confidence 99999988753 234688999999998877655 3333337788888888765332223333444458999999
Q ss_pred eccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCC
Q 009835 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEG 355 (524)
Q Consensus 276 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 355 (524)
++|.++. +|.. .+++|+.|++++|...+..+..+.+++.+++|++++|.+.+..+..+..++ +|++|+|++
T Consensus 158 ~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~------~L~~L~L~~ 228 (305)
T d1xkua_ 158 ADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP------HLRELHLNN 228 (305)
T ss_dssp CSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST------TCCEEECCS
T ss_pred ccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc------cceeeeccc
Confidence 9998873 4443 357899999999998888888899999999999999999888888887765 899999999
Q ss_pred CCCccCCCCCCCCCCCcEEEccCCcCccccchhh------hcCCCCCEEECcCCcCe
Q 009835 356 NDITGPLPDLGGFSSLKILVLGENRLNGTIDKSL------SQLLKLESLSLGRNSFT 406 (524)
Q Consensus 356 n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~l~~N~l~ 406 (524)
|+++..+..+..+++|++|+|++|+++......| ..+++|+.|++++|++.
T Consensus 229 N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 9998765568889999999999999885433333 35678889999999875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.9e-24 Score=205.37 Aligned_cols=213 Identities=23% Similarity=0.172 Sum_probs=121.2
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEcc-CCCCCCCCCchh
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLE-NSNLFSLGSLQW 184 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~~ 184 (524)
.+|..+. +++++|+|++|.++.. .+..|.++++|++|++++|.+....+..+.++..++.++.. .+.+..++ +..
T Consensus 25 ~iP~~ip--~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~ 100 (284)
T d1ozna_ 25 AVPVGIP--AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PAT 100 (284)
T ss_dssp SCCTTCC--TTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTT
T ss_pred ccCCCCC--CCCCEEECcCCcCCCC-CHHHhhcccccccccccccccccccccccccccccccccccccccccccc-chh
Confidence 4555443 4678888888888764 44567788888888888888777777777777777777665 33444333 244
Q ss_pred cCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhh
Q 009835 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLF 264 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 264 (524)
+.++++|++|++++|.+.... ...+...++|+.+++++|.+++. ++..+
T Consensus 101 ~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~i-----------------------------~~~~f 149 (284)
T d1ozna_ 101 FHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQAL-----------------------------PDDTF 149 (284)
T ss_dssp TTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCC-----------------------------CTTTT
T ss_pred hcccccCCEEecCCccccccc--ccccchhcccchhhhcccccccc-----------------------------ChhHh
Confidence 666666666666666655443 12333444444444444444433 33333
Q ss_pred hccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCC
Q 009835 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344 (524)
Q Consensus 265 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 344 (524)
...++|+.|++++|++++..+..+.++++|+.+++++|++++..|..|..+++|++|++++|.+.+..+..|..++
T Consensus 150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~---- 225 (284)
T d1ozna_ 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR---- 225 (284)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT----
T ss_pred ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccc----
Confidence 3333555555555555544445555555555555555555555555555555555555555555555555554433
Q ss_pred CCCccEEEcCCCCCc
Q 009835 345 MNSLEGVCLEGNDIT 359 (524)
Q Consensus 345 ~~~L~~L~Ls~n~l~ 359 (524)
+|++|++++|.+.
T Consensus 226 --~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 226 --ALQYLRLNDNPWV 238 (284)
T ss_dssp --TCCEEECCSSCEE
T ss_pred --ccCEEEecCCCCC
Confidence 4555555554444
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.5e-24 Score=202.95 Aligned_cols=228 Identities=24% Similarity=0.251 Sum_probs=148.3
Q ss_pred EEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeC
Q 009835 145 LNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 145 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
++.++++++ .+|..+. +++++|+|++|+++.++. ..|.++++|++|++++|.+..... ..+..+
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~ls~n~l~~i~~--~~~~~~---------- 79 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDA--AAFTGL---------- 79 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT--TTTTTC----------
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCH-HHhhcccccccccccccccccccc--cccccc----------
Confidence 444444443 3343332 345666666666654443 335555555555555555544431 223333
Q ss_pred CCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCccc
Q 009835 225 CALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNEL 304 (524)
Q Consensus 225 n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 304 (524)
..++.++...+.... .+++..+...++|++|++++|.+....+..+....+|+.+++++|.+
T Consensus 80 -----------------~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l 141 (284)
T d1ozna_ 80 -----------------ALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141 (284)
T ss_dssp -----------------TTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred -----------------ccccccccccccccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc
Confidence 445555443222211 33333333334677777777776655555666677777777777777
Q ss_pred ccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCcc
Q 009835 305 EGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNG 383 (524)
Q Consensus 305 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 383 (524)
++..+..|..+++|++|++++|.+++..+..|..++ +|+.+++++|++++..|. |.++++|++|++++|.+.+
T Consensus 142 ~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~------~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~ 215 (284)
T d1ozna_ 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (284)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cccChhHhccccchhhcccccCcccccchhhhcccc------ccchhhhhhccccccChhHhhhhhhccccccccccccc
Confidence 766666777777788888888887777676666654 788888888888877766 8888999999999999998
Q ss_pred ccchhhhcCCCCCEEECcCCcCeeeCCCC
Q 009835 384 TIDKSLSQLLKLESLSLGRNSFTGKIPLG 412 (524)
Q Consensus 384 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 412 (524)
..+..|..+++|++|++++|++.+.++..
T Consensus 216 ~~~~~~~~~~~L~~L~l~~N~l~C~C~~~ 244 (284)
T d1ozna_ 216 LPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (284)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccccccccccccCEEEecCCCCCCCccch
Confidence 88888999999999999999999887654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.90 E-value=8.1e-25 Score=212.40 Aligned_cols=227 Identities=21% Similarity=0.329 Sum_probs=174.8
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ |.++|.+|++|+++++|++|+|++|++.+. .+..+..+.+|+++++++|.+.+.+|..+.+
T Consensus 76 ~~L~~L~Ls~~-------N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~ 147 (313)
T d1ogqa_ 76 PYLNFLYIGGI-------NNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp TTCSEEEEEEE-------TTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred ccccccccccc-------cccccccccccccccccchhhhcccccccc-ccccccchhhhcccccccccccccCchhhcc
Confidence 47888999864 489999999999999999999999999987 7888999999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|+++++++|.+.+... . .+..+. .
T Consensus 148 l~~L~~l~l~~n~l~~~ip-~--------------------------~~~~l~--------------------------~ 174 (313)
T d1ogqa_ 148 LPNLVGITFDGNRISGAIP-D--------------------------SYGSFS--------------------------K 174 (313)
T ss_dssp CTTCCEEECCSSCCEEECC-G--------------------------GGGCCC--------------------------T
T ss_pred Ccccceeeccccccccccc-c--------------------------cccccc--------------------------c
Confidence 9999999988887652111 1 122221 1
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
.++.+++++|++++ ..+..+. .. ....++++++...+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|+
T Consensus 175 l~~~l~~~~n~l~~-~~~~~~~-~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~ 250 (313)
T d1ogqa_ 175 LFTSMTISRNRLTG-KIPPTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250 (313)
T ss_dssp TCCEEECCSSEEEE-ECCGGGG-GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEE
T ss_pred cccccccccccccc-ccccccc-cc-ccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 22344444444433 2233222 23 45679999999999999999999999999999999997655 578888899999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENR 380 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~ 380 (524)
+++|++++.+|..++.++ +|++|+|++|+++|.+|.++++++|+.+++++|+
T Consensus 251 Ls~N~l~g~iP~~l~~L~------~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 251 LRNNRIYGTLPQGLTQLK------FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSCCEECCCGGGGGCT------TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CccCeecccCChHHhCCC------CCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence 999988888888777765 7777777777777766766666666666666665
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.7e-22 Score=188.60 Aligned_cols=199 Identities=22% Similarity=0.157 Sum_probs=123.7
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
..+.+.|.++++++. +|..+. ++|++|+|++|.+.+..+..|.++++|++|+|++|+++.++. ++.+++|++|
T Consensus 10 ~~~~~v~C~~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~---~~~l~~L~~L 82 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTL 82 (266)
T ss_dssp TTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEE
T ss_pred CCCeEEEccCCCCCe--eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc---cccccccccc
Confidence 344445555555553 444332 345566666555555544555666666666666665554332 4556666666
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|+++..+. .+..+++|+.|++++|.+....+. .+..+.++++|++++|.+ ..+++..+...++++.++
T Consensus 83 ~Ls~N~l~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~l~~L~l~~n~l--~~l~~~~~~~l~~l~~l~ 154 (266)
T d1p9ag_ 83 DLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLS 154 (266)
T ss_dssp ECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEE
T ss_pred cccccccccccc---ccccccccccccccccccceeecc---cccccccccccccccccc--ceeccccccccccchhcc
Confidence 666666655432 455566666666666666555442 223337777777777777 345555555555778888
Q ss_pred eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
+++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 8888877666667777788888888888877 66767777777888888877765
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.4e-21 Score=184.55 Aligned_cols=204 Identities=24% Similarity=0.190 Sum_probs=137.4
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
+...+.+++.+++.++.++. .+. ++|++|+|++|.++..+ ...+.++++|++|++++|.++...+
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~--~lp--~~l~~L~Ls~N~i~~l~--~~~f~~l~~L~~L~L~~N~l~~l~~--------- 72 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPP--DLP--KDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAELTKLQV--------- 72 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCS--CCC--TTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTSCCCEEEC---------
T ss_pred ccCCCeEEEccCCCCCeeCc--CcC--cCCCEEECcCCcCCCcC--HHHhhcccccccccccccccccccc---------
Confidence 44555566666666665442 121 35666666666666553 2345555555555555555442211
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
.. ..++|++|++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.++++|
T Consensus 73 ---------------------~~-~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 129 (266)
T d1p9ag_ 73 ---------------------DG-TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (266)
T ss_dssp ---------------------CS-CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred ---------------------cc-ccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccc
Confidence 11 12356666666666553 34455666777777777777776666667777778888
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
++++|.++...+..+..++ +|+.+++++|++++.++. +..+++|++|+|++|+++ .+|..+..+++|+.|+|
T Consensus 130 ~l~~n~l~~l~~~~~~~l~------~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L 202 (266)
T d1p9ag_ 130 YLKGNELKTLPPGLLTPTP------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202 (266)
T ss_dssp ECTTSCCCCCCTTTTTTCT------TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred cccccccceeccccccccc------cchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEe
Confidence 8888877776666665544 788888888888877766 788899999999999998 78888888999999999
Q ss_pred cCCcCeeeCC
Q 009835 401 GRNSFTGKIP 410 (524)
Q Consensus 401 ~~N~l~~~~p 410 (524)
++|++.+.+.
T Consensus 203 ~~Np~~CdC~ 212 (266)
T d1p9ag_ 203 HGNPWLCNCE 212 (266)
T ss_dssp CSCCBCCSGG
T ss_pred cCCCCCCCcc
Confidence 9999988664
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=4e-18 Score=156.54 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=60.3
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
+..+.+|++|++.+|.++. + ..++.+++|++|++++|.+.+..| +.++++|+++++++|.++.++ .+.++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~---~l~~l~~ 108 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS---AIAGLQS 108 (227)
T ss_dssp HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---GGTTCTT
T ss_pred HHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc---ccccccc
Confidence 3455666777777776664 3 235666666666666666654432 566666666666666655433 2556666
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCC
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 228 (524)
|++++++++...... .+...+.++.+.++.+.+.
T Consensus 109 L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 142 (227)
T d1h6ua2 109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQIT 142 (227)
T ss_dssp CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCC
T ss_pred ccccccccccccccc----hhccccchhhhhchhhhhc
Confidence 666666665544432 2344445555555544443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.76 E-value=4.7e-18 Score=156.09 Aligned_cols=204 Identities=23% Similarity=0.283 Sum_probs=113.1
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
..++++.+.+++. ..+..+.+|++|++.+|.+... +.+.++++|++|++++|.+..+.. +..+++|++++++
T Consensus 22 ~~~~l~~~~~~d~---~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~ 93 (227)
T d1h6ua2 22 IKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELS 93 (227)
T ss_dssp HHHHTTCSSTTSE---ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECC
T ss_pred HHHHhCCCCcCCc---CCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc---ccccccccccccc
Confidence 3445566666553 2344567777888877777643 346777777777777777764432 6677777777777
Q ss_pred CCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec
Q 009835 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF 277 (524)
Q Consensus 198 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 277 (524)
+|.++... .+..+++|+.++++++...+..+ +... +.++.+.++++.
T Consensus 94 ~n~~~~i~----~l~~l~~L~~l~l~~~~~~~~~~----~~~~-~~~~~l~~~~~~------------------------ 140 (227)
T d1h6ua2 94 GNPLKNVS----AIAGLQSIKTLDLTSTQITDVTP----LAGL-SNLQVLYLDLNQ------------------------ 140 (227)
T ss_dssp SCCCSCCG----GGTTCTTCCEEECTTSCCCCCGG----GTTC-TTCCEEECCSSC------------------------
T ss_pred cccccccc----cccccccccccccccccccccch----hccc-cchhhhhchhhh------------------------
Confidence 77666542 45566666666666655443221 1111 444444444444
Q ss_pred cccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCC
Q 009835 278 NSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357 (524)
Q Consensus 278 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~ 357 (524)
+.... .+..+++|+.|++++|.+.+.. .+.++++|++|++++|++++..+ +..++ +|++|++++|+
T Consensus 141 --~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~------~L~~L~Ls~N~ 206 (227)
T d1h6ua2 141 --ITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP--LASLP------NLIEVHLKNNQ 206 (227)
T ss_dssp --CCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCT------TCCEEECTTSC
T ss_pred --hchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCChh--hcCCC------CCCEEECcCCc
Confidence 43221 2334445555555555544222 24555556666666665554321 33332 56666666666
Q ss_pred CccCCCCCCCCCCCcEEEcc
Q 009835 358 ITGPLPDLGGFSSLKILVLG 377 (524)
Q Consensus 358 l~~~~~~~~~l~~L~~L~Ls 377 (524)
+++.. .+.++++|+.|+++
T Consensus 207 lt~i~-~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 207 ISDVS-PLANTSNLFIVTLT 225 (227)
T ss_dssp CCBCG-GGTTCTTCCEEEEE
T ss_pred CCCCc-ccccCCCCCEEEee
Confidence 65432 35666677777665
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.75 E-value=1.2e-16 Score=156.29 Aligned_cols=270 Identities=23% Similarity=0.222 Sum_probs=162.3
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
++++|||+++ .++ .+|+. .++|++|++++|+++. +|.. +.+|++|++++|.++.. + .+
T Consensus 39 ~l~~LdLs~~--------~L~-~lp~~---~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~l~~n~l~~l-~----~l 96 (353)
T d1jl5a_ 39 QAHELELNNL--------GLS-SLPEL---PPHLESLVASCNSLTE--LPEL---PQSLKSLLVDNNNLKAL-S----DL 96 (353)
T ss_dssp TCSEEECTTS--------CCS-CCCSC---CTTCSEEECCSSCCSS--CCCC---CTTCCEEECCSSCCSCC-C----SC
T ss_pred CCCEEEeCCC--------CCC-CCCCC---CCCCCEEECCCCCCcc--cccc---hhhhhhhhhhhcccchh-h----hh
Confidence 5778999995 554 46653 4689999999999986 6765 45899999999988632 2 23
Q ss_pred -CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 164 -SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 164 -~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+.|++|++++|.+..++. +..+++|++|+++++.+...+. ....+..+.+..+....... +... +
T Consensus 97 p~~L~~L~L~~n~l~~lp~---~~~l~~L~~L~l~~~~~~~~~~------~~~~l~~l~~~~~~~~~~~~----l~~l-~ 162 (353)
T d1jl5a_ 97 PPLLEYLGVSNNQLEKLPE---LQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEELPE----LQNL-P 162 (353)
T ss_dssp CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSCCC----CTTC-T
T ss_pred ccccccccccccccccccc---hhhhccceeecccccccccccc------ccccccchhhcccccccccc----cccc-c
Confidence 469999999999987764 6789999999999998876643 34567788887766544322 2233 8
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
.++.+++++|.... .+.. ....+.+...++.+. .++ .+..++.|+.+++++|.... .+. ...++..+.
T Consensus 163 ~l~~L~l~~n~~~~--~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~ 230 (353)
T d1jl5a_ 163 FLTAIYADNNSLKK--LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALN 230 (353)
T ss_dssp TCCEEECCSSCCSS--CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEE
T ss_pred cceecccccccccc--cccc----ccccccccccccccc-ccc-cccccccccccccccccccc-ccc---ccccccccc
Confidence 88999999887633 2211 113344444444433 222 23445666666666665442 222 123344444
Q ss_pred ccCCCCCCchhHHHHh----------------ccC---------------CCCCCCccEEEcCCCCCccCCCCCCCCCCC
Q 009835 323 LPYNKLSGDLSEMIQN----------------LSG---------------GCTMNSLEGVCLEGNDITGPLPDLGGFSSL 371 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~----------------l~~---------------~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L 371 (524)
+.++.+..... .... ++. ...+++|++|++++|+++..+. .+++|
T Consensus 231 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L 306 (353)
T d1jl5a_ 231 VRDNYLTDLPE-LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRL 306 (353)
T ss_dssp CCSSCCSCCCC-CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTC
T ss_pred ccccccccccc-ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCcccc---ccCCC
Confidence 44444332110 0000 000 0113466666666666664322 24566
Q ss_pred cEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+.|+|++|+++ .+|.. +++|++|++++|+++ .+|
T Consensus 307 ~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp 340 (353)
T d1jl5a_ 307 ERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP 340 (353)
T ss_dssp CEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred CEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence 66666666665 34432 345666666666665 444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.3e-18 Score=157.90 Aligned_cols=194 Identities=18% Similarity=0.137 Sum_probs=107.1
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccC-CccccCCCCCcEEEccC-CCCCCCCCch
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLHLEN-SNLFSLGSLQ 183 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~~~~ 183 (524)
.+|+.+. +++++|++++|.++.. .+..|.++++|++|++++|.+...+ +..|.++++++++.+.. |++..... .
T Consensus 22 ~iP~~l~--~~l~~L~Ls~n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-~ 97 (242)
T d1xwdc1 22 EIPSDLP--RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-E 97 (242)
T ss_dssp SCCSCSC--SCCSEEEEESCCCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-T
T ss_pred CcCCCCC--CCCCEEECcCCcCCcc-ChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc-c
Confidence 4555443 4788899998888764 3456788888888888888876644 44677888888887764 44543332 4
Q ss_pred hcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchh
Q 009835 184 WLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWL 263 (524)
Q Consensus 184 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 263 (524)
.+.++++|++|++++|.+...+. ...+..+..+..+...++.+....+. .+.....
T Consensus 98 ~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~--~~~~~~~--------------------- 153 (242)
T d1xwdc1 98 AFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERN--SFVGLSF--------------------- 153 (242)
T ss_dssp SEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECTT--SSTTSBS---------------------
T ss_pred cccccccccccccchhhhccccc-cccccccccccccccccccccccccc--ccccccc---------------------
Confidence 56777777777777777665432 22333334444444444443332221 1111112
Q ss_pred hhccccccEEEeeccccccccchhhhcccccce-EeecCcccccccchhhcCCCCCCEEEccCCCCCCchh
Q 009835 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF-LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLS 333 (524)
Q Consensus 264 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 333 (524)
.++.|++++|+++...+..+ ...+++. +++++|+++...+..|.++++|++|++++|+++...+
T Consensus 154 -----~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 218 (242)
T d1xwdc1 154 -----ESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 218 (242)
T ss_dssp -----SCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred -----cceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH
Confidence 44555555555543222222 2223222 2344555553333445555666666666665554433
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.3e-20 Score=187.74 Aligned_cols=314 Identities=18% Similarity=0.171 Sum_probs=199.2
Q ss_pred cEEEEEcCCCCCCCCCCCcceee-cCccccCCCCCCEEEccCCCCCCC---CCccccCCCCCCCEEEccCCCCCcc----
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGT-ISPALLKLHDLRHLDLSNNHFGGS---PLPEFIGSLSRLRYLNLSCGTSLLK---- 155 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~~~~~---- 155 (524)
++++||++++ .+++. +..-+..+++++.|+|++|.++.. .++..+..+++|++|+|++|.++..
T Consensus 3 ~l~~ld~~~~--------~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~ 74 (460)
T d1z7xw1 3 DIQSLDIQCE--------ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 74 (460)
T ss_dssp EEEEEEEESC--------CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred CCCEEEeeCC--------cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence 5889999885 55543 233456789999999999998743 1456678899999999999988632
Q ss_pred CCcccc-CCCCCcEEEccCCCCCCCCC---chhcCCCCCCcEEEccCCCCCCCCC-------------------------
Q 009835 156 VPRPFQ-YLSGLVYLHLENSNLFSLGS---LQWLSHLSSLRHLDLSYINLTKSSD------------------------- 206 (524)
Q Consensus 156 ~p~~~~-~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------- 206 (524)
+.+.+. ...+|++|+|++|++++.+. ...+..+++|++|++++|.++....
T Consensus 75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 154 (460)
T d1z7xw1 75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 154 (460)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence 222333 34589999999999874332 2346789999999999998653200
Q ss_pred ------chHhhhcccCCCEEEeeCCCCCCCC--------------------------CC----chhhhcccCcccEEEcc
Q 009835 207 ------WFQVVAKLRSLKTLVLHSCALPPIN--------------------------PS----SIWHFNLSTSIETLDLS 250 (524)
Q Consensus 207 ------~~~~l~~l~~L~~L~L~~n~l~~~~--------------------------~~----~~~~~~~~~~L~~L~L~ 250 (524)
....+.....++.++++.+...... .. ........+.++.++++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 234 (460)
T d1z7xw1 155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234 (460)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchh
Confidence 0122334456666666654332100 00 00011112556666666
Q ss_pred CCCCCCC---CCCchhhhccccccEEEeeccccccc----cchhhhcccccceEeecCcccccccchhh-----cCCCCC
Q 009835 251 DNNLPSS---SVYPWLFNLSRNIQYLNLGFNSLQGS----IPEAFQLMVSLRFLYLTSNELEGGIPKFF-----GKMCSL 318 (524)
Q Consensus 251 ~n~l~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L 318 (524)
+|.+... ............++.+++++|.+... ....+...+.++.+++++|.+.......+ .....|
T Consensus 235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L 314 (460)
T d1z7xw1 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 314 (460)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred hccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence 6654210 01112222334688888888877643 22344567788888888888764332222 234578
Q ss_pred CEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC----CC-C-CCCCCCcEEEccCCcCccc----cchh
Q 009835 319 NRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL----PD-L-GGFSSLKILVLGENRLNGT----IDKS 388 (524)
Q Consensus 319 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~-~-~~l~~L~~L~Ls~N~l~~~----~p~~ 388 (524)
+.+++++|.++......+..+. ...++|++|+|++|++++.. .. + ...+.|++|+|++|.+++. ++..
T Consensus 315 ~~l~l~~~~l~~~~~~~l~~~~--~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 392 (460)
T d1z7xw1 315 ESLWVKSCSFTAACCSHFSSVL--AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 392 (460)
T ss_dssp CEEECTTSCCBGGGHHHHHHHH--HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhccccc--ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence 8899998888876655554322 12347999999999886532 11 2 3467799999999998753 4455
Q ss_pred hhcCCCCCEEECcCCcCee
Q 009835 389 LSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 389 ~~~l~~L~~L~l~~N~l~~ 407 (524)
+..+++|++|||++|+++.
T Consensus 393 l~~~~~L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 393 LLANHSLRELDLSNNCLGD 411 (460)
T ss_dssp HHHCCCCCEEECCSSSCCH
T ss_pred HhcCCCCCEEECCCCcCCH
Confidence 6778899999999998863
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5.4e-18 Score=157.22 Aligned_cols=220 Identities=12% Similarity=0.082 Sum_probs=146.9
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
+.++.++..++. +|..+. +++++|++++|.+....+.+|.++++|++|++++|.+........|.++++++++.+.
T Consensus 11 ~~i~c~~~~l~~--iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQESKVTE--IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEESCSCSS--CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeCCCCCC--cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 567777777775 665543 5789999998888876666788888999999988887654444557778888887765
Q ss_pred C-CCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEee
Q 009835 198 Y-INLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLG 276 (524)
Q Consensus 198 ~-n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 276 (524)
. |.+.... +..+.++++|+++++++|.+....+. . .....+.+..+...
T Consensus 87 ~~n~l~~~~--~~~~~~l~~L~~l~l~~~~l~~~~~~--~--------------------------~~~~l~~l~~~~~~ 136 (242)
T d1xwdc1 87 KANNLLYIN--PEAFQNLPNLQYLLISNTGIKHLPDV--H--------------------------KIHSLQKVLLDIQD 136 (242)
T ss_dssp CCTTCCEEC--TTSEECCTTCCEEEEESCCCCSCCCC--T--------------------------TTCBSSCEEEEEES
T ss_pred ccccccccc--cccccccccccccccchhhhcccccc--c--------------------------cccccccccccccc
Confidence 4 4444433 23456666666666666655433221 1 11112244444555
Q ss_pred ccccccccchhhhcc-cccceEeecCcccccccchhhcCCCCCCEE-EccCCCCCCchhHHHHhccCCCCCCCccEEEcC
Q 009835 277 FNSLQGSIPEAFQLM-VSLRFLYLTSNELEGGIPKFFGKMCSLNRL-CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 277 ~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
++.+....+..+..+ ..++.|++++|+++...+..+ ..++++.+ ++++|+++...+..|..++ +|++|+++
T Consensus 137 n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~------~L~~L~Ls 209 (242)
T d1xwdc1 137 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGAS------GPVILDIS 209 (242)
T ss_dssp CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSC------CCSEEECT
T ss_pred ccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCC------CCCEEECC
Confidence 555554444445444 478899999999995544444 45565555 5788889877666677655 99999999
Q ss_pred CCCCccCCCC-CCCCCCCcEEEccC
Q 009835 355 GNDITGPLPD-LGGFSSLKILVLGE 378 (524)
Q Consensus 355 ~n~l~~~~~~-~~~l~~L~~L~Ls~ 378 (524)
+|+++..++. +.++++|+.+++.+
T Consensus 210 ~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 210 RTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp TSCCCCCCSSSCTTCCEEESSSEES
T ss_pred CCcCCccCHHHHcCCcccccCcCCC
Confidence 9999977665 77777777776654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.73 E-value=3.1e-16 Score=153.20 Aligned_cols=263 Identities=22% Similarity=0.213 Sum_probs=161.6
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
..+++.|+|+++ .++ .+|.. ..+|+.|++++|.++. ++.. .+.|++|++++|.+.. +| .++
T Consensus 57 ~~~L~~L~Ls~N--------~l~-~lp~~---~~~L~~L~l~~n~l~~--l~~l---p~~L~~L~L~~n~l~~-lp-~~~ 117 (353)
T d1jl5a_ 57 PPHLESLVASCN--------SLT-ELPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQ 117 (353)
T ss_dssp CTTCSEEECCSS--------CCS-SCCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCT
T ss_pred CCCCCEEECCCC--------CCc-ccccc---hhhhhhhhhhhcccch--hhhh---cccccccccccccccc-cc-chh
Confidence 357999999985 665 56654 4589999999999876 4432 2469999999999874 45 368
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc-------
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS------- 234 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~------- 234 (524)
.+++|++|+++++.+...+. ....+..+.+.++...... .+..++.++.+++.+|.........
T Consensus 118 ~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~----~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~ 188 (353)
T d1jl5a_ 118 NSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNNSLKKLPDLPLSLESIV 188 (353)
T ss_dssp TCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred hhccceeecccccccccccc-----ccccccchhhccccccccc----cccccccceecccccccccccccccccccccc
Confidence 89999999999998764332 2344555555544443322 2344555555555555433221100
Q ss_pred ---------hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcc--------------
Q 009835 235 ---------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM-------------- 291 (524)
Q Consensus 235 ---------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-------------- 291 (524)
..... ++.|+.+++++|... .++. ...++..+.+.++.+... +.....+
T Consensus 189 ~~~~~~~~~~~~~~-l~~L~~l~l~~n~~~--~~~~----~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~ 260 (353)
T d1jl5a_ 189 AGNNILEELPELQN-LPFLTTIYADNNLLK--TLPD----LPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLS 260 (353)
T ss_dssp CCSSCCSSCCCCTT-CTTCCEEECCSSCCS--SCCS----CCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSEES
T ss_pred cccccccccccccc-ccccccccccccccc--cccc----cccccccccccccccccc-ccccccccccccccccccccc
Confidence 01122 266777777776652 2222 122566666666655421 1111100
Q ss_pred ---cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCC
Q 009835 292 ---VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF 368 (524)
Q Consensus 292 ---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l 368 (524)
......++..+.+. .....+++|++|++++|+++.. |.. +++|+.|++++|+++.. |. .+
T Consensus 261 ~l~~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~~l-p~~---------~~~L~~L~L~~N~L~~l-~~--~~ 323 (353)
T d1jl5a_ 261 ELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLIEL-PAL---------PPRLERLIASFNHLAEV-PE--LP 323 (353)
T ss_dssp CCCTTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCSCC-CCC---------CTTCCEEECCSSCCSCC-CC--CC
T ss_pred cccchhcccccccCccc----cccccCCCCCEEECCCCccCcc-ccc---------cCCCCEEECCCCcCCcc-cc--cc
Confidence 11222333333333 1223467999999999999853 322 34899999999999854 43 25
Q ss_pred CCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 369 SSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 369 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
++|+.|++++|+++ .+|.. ..+|+.|.+.
T Consensus 324 ~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 324 QNLKQLHVEYNPLR-EFPDI---PESVEDLRMN 352 (353)
T ss_dssp TTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred CCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence 68999999999998 56653 3467777764
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=6.5e-18 Score=150.77 Aligned_cols=176 Identities=22% Similarity=0.174 Sum_probs=112.9
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccc-cchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS-IPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
.++++.+++++ ..+|+.+ ++++++|+|++|+|++. .+..|..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 10 ~~~v~Cs~~~L--~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~ 84 (192)
T d1w8aa_ 10 GTTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEEeCCCc--CccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence 45677777777 4556543 34777777777777653 345567777777777777777777777777777777777
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
|++|+++...+..|..++ +|++|+|++|+|++..+. |..+++|++|+|++|.+....+.... ...++.+.+.
T Consensus 85 Ls~N~l~~l~~~~F~~l~------~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~ 157 (192)
T d1w8aa_ 85 LGENKIKEISNKMFLGLH------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLN 157 (192)
T ss_dssp CCSCCCCEECSSSSTTCT------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCS
T ss_pred eccccccccCHHHHhCCC------cccccccCCccccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhccc
Confidence 777777776666666654 777777777777776665 67777777777777777643321111 1124445566
Q ss_pred CCcCeeeCCCCCcccccccccccCCCCCCCCC
Q 009835 402 RNSFTGKIPLGTQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 402 ~N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~~ 433 (524)
.|.+++..|.. +.......+..|...|..+
T Consensus 158 ~~~~~c~~p~~--l~~~~l~~L~~n~l~C~~~ 187 (192)
T d1w8aa_ 158 GGAARCGAPSK--VRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp GGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred CCCeEeCCChh--hcCCEeeecCHhhCcCCCC
Confidence 66666666643 3334444556666666444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=8.8e-17 Score=145.41 Aligned_cols=164 Identities=21% Similarity=0.273 Sum_probs=84.6
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+..|++|++++|.++.. + .+..+++|++|++++|.+++.. .++.+++|++|++++|+++.++ .+.++++|+.
T Consensus 45 L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~ 116 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS---SLKDLKKLKS 116 (210)
T ss_dssp HHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG---GGTTCTTCCE
T ss_pred hcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc---cccccccccc
Confidence 44555666666655542 2 2445555555555555554422 2445555555555555554322 2444555555
Q ss_pred EEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEE
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYL 273 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 273 (524)
|++++|.+...+ .+..+ +.++.+++++|.+++ ....... ++|+.+
T Consensus 117 L~l~~~~~~~~~----~l~~l---------------------------~~l~~l~~~~n~l~~---~~~~~~l-~~L~~l 161 (210)
T d1h6ta2 117 LSLEHNGISDIN----GLVHL---------------------------PQLESLYLGNNKITD---ITVLSRL-TKLDTL 161 (210)
T ss_dssp EECTTSCCCCCG----GGGGC---------------------------TTCCEEECCSSCCCC---CGGGGGC-TTCSEE
T ss_pred cccccccccccc----ccccc---------------------------ccccccccccccccc---ccccccc-cccccc
Confidence 555555443321 23334 455555555555522 1222222 356666
Q ss_pred EeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEcc
Q 009835 274 NLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324 (524)
Q Consensus 274 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 324 (524)
++++|++++. + .+.++++|+.|++++|.++. ++ .+.++++|++|+|+
T Consensus 162 ~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 162 SLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp ECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred cccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 6666666532 2 25566666667776666663 33 46666677777665
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.2e-16 Score=144.46 Aligned_cols=165 Identities=22% Similarity=0.264 Sum_probs=110.4
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+.+|++|++++|.+..+.. +..+++|++|++++|.+++.+ .++.+++|+.|++++|.+++.. .+..+ +
T Consensus 45 L~~L~~L~l~~~~i~~l~~---l~~l~~L~~L~L~~n~i~~l~----~~~~l~~L~~L~l~~n~i~~l~----~l~~l-~ 112 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIK----PLANLKNLGWLFLDENKVKDLS----SLKDL-K 112 (210)
T ss_dssp HHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCGG----GGTTC-T
T ss_pred hcCccEEECcCCCCCCchh---HhhCCCCCEEeCCCccccCcc----ccccCccccccccccccccccc----ccccc-c
Confidence 3445555555555543332 445555555555555555432 2455566666666666655421 22333 7
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|+.|++++|.+. . .+.+.... +++.+++++|.+++. ..+..+++|+.+++++|++++. + .+.++++|++|+
T Consensus 113 ~L~~L~l~~~~~~--~-~~~l~~l~-~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~ 184 (210)
T d1h6ta2 113 KLKSLSLEHNGIS--D-INGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLY 184 (210)
T ss_dssp TCCEEECTTSCCC--C-CGGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEE
T ss_pred ccccccccccccc--c-cccccccc-ccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEE
Confidence 7888888888763 2 33444444 899999999999853 3577899999999999999854 3 388999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEG 355 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 355 (524)
+++|++++. + .+..++ +|++|+|++
T Consensus 185 Ls~N~i~~l-~-~l~~l~------~L~~L~Ls~ 209 (210)
T d1h6ta2 185 LSKNHISDL-R-ALAGLK------NLDVLELFS 209 (210)
T ss_dssp CCSSCCCBC-G-GGTTCT------TCSEEEEEE
T ss_pred CCCCCCCCC-h-hhcCCC------CCCEEEccC
Confidence 999999864 3 355554 999999874
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.70 E-value=8.6e-18 Score=149.96 Aligned_cols=156 Identities=25% Similarity=0.313 Sum_probs=131.6
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccc-cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG-IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
..+.++.++++++ .+|..+. +++++|+|++|++++. .+..|.++++|++|+|++|.+....+..+..++ +
T Consensus 9 ~~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~------~ 79 (192)
T d1w8aa_ 9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS------H 79 (192)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT------T
T ss_pred cCCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc------c
Confidence 4568999999998 6776653 6899999999999864 466789999999999999999999888888766 9
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCC
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGN 426 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn 426 (524)
|++|+|++|+++...+. |.++++|++|+|++|++++..+..|..+++|++|+|++|++.+.++.......+....+.+|
T Consensus 80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~ 159 (192)
T d1w8aa_ 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG 159 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGG
T ss_pred cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCC
Confidence 99999999999998887 99999999999999999988888999999999999999999987765443444445556666
Q ss_pred CCCCCCC
Q 009835 427 PELCGLP 433 (524)
Q Consensus 427 ~~~C~~~ 433 (524)
...|..|
T Consensus 160 ~~~c~~p 166 (192)
T d1w8aa_ 160 AARCGAP 166 (192)
T ss_dssp GCBBCSS
T ss_pred CeEeCCC
Confidence 6666554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=2.2e-16 Score=141.47 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=71.6
Q ss_pred CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCE
Q 009835 140 SRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT 219 (524)
Q Consensus 140 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 219 (524)
+++++|++++|.+... +.+..+++|++|++++|+++++.. +.++++|++|++++|.+...+ .+..+++|+.
T Consensus 40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~---l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~ 110 (199)
T d2omxa2 40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADIT----PLANLTNLTG 110 (199)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSE
T ss_pred cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc---ccCCccccccccccccccccc----cccccccccc
Confidence 3444444444443321 123444444444444444443221 444445555555544443332 2444444555
Q ss_pred EEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEee
Q 009835 220 LVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYL 299 (524)
Q Consensus 220 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 299 (524)
|+++++...... .+..+ ++|+.|++++|++.. .+.+.... +|+.|++++|++++. + .+.++++|++|++
T Consensus 111 L~l~~~~~~~~~----~~~~l-~~L~~L~l~~n~l~~---~~~l~~~~-~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~l 179 (199)
T d2omxa2 111 LTLFNNQITDID----PLKNL-TNLNRLELSSNTISD---ISALSGLT-SLQQLNFSSNQVTDL-K-PLANLTTLERLDI 179 (199)
T ss_dssp EECCSSCCCCCG----GGTTC-TTCSEEECCSSCCCC---CGGGTTCT-TCSEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred cccccccccccc----ccchh-hhhHHhhhhhhhhcc---cccccccc-cccccccccccccCC-c-cccCCCCCCEEEC
Confidence 555444443321 11222 555555555555421 12222222 555666655555532 1 2455566666666
Q ss_pred cCcccccccchhhcCCCCCCEE
Q 009835 300 TSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 300 s~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++++ ++ .++++++|++|
T Consensus 180 s~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 180 SSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp CSSCCCC-CG-GGGGCTTCSEE
T ss_pred CCCCCCC-Cc-cccCCCCCCcC
Confidence 6666553 22 35555555544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2e-17 Score=157.04 Aligned_cols=204 Identities=19% Similarity=0.122 Sum_probs=98.1
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCcc-CCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEE
Q 009835 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK-VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLD 195 (524)
Q Consensus 117 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 195 (524)
+..+.++...+... ........+|++||++++.+... ++..+.++++|++|+++++.+.. .....+..+++|++|+
T Consensus 25 ~~~lrl~~~~~~~~--~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~ 101 (284)
T d2astb2 25 VIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLN 101 (284)
T ss_dssp CSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEE
T ss_pred ceEeeccccccccc--hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCc-HHHHHHhcCCCCcCcc
Confidence 44555555444321 12223345666677666655432 23335566666666666665542 2224455666666666
Q ss_pred ccCC-CCCCCCCchHhhhcccCCCEEEeeCCCC-CCCCCCchhhhcccCcccEEEccCCC--CCCCCCCchhhhcccccc
Q 009835 196 LSYI-NLTKSSDWFQVVAKLRSLKTLVLHSCAL-PPINPSSIWHFNLSTSIETLDLSDNN--LPSSSVYPWLFNLSRNIQ 271 (524)
Q Consensus 196 Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~L~ 271 (524)
++++ .+++.. .......+++|++|++++|.. +..... .......+.|+.|+++++. ++. .....+....++|+
T Consensus 102 Ls~c~~itd~~-l~~l~~~~~~L~~L~ls~c~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~i~~-~~l~~l~~~~~~L~ 178 (284)
T d2astb2 102 LSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQK-SDLSTLVRRCPNLV 178 (284)
T ss_dssp CTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCH-HHHHHHHHHCTTCS
T ss_pred ccccccccccc-cchhhHHHHhccccccccccccccccch-hhhcccccccchhhhccccccccc-cccccccccccccc
Confidence 6664 233211 112234556666666665432 111000 0122222456666665432 221 11222223334566
Q ss_pred EEEeecc-ccccccchhhhcccccceEeecCc-ccccccchhhcCCCCCCEEEccCC
Q 009835 272 YLNLGFN-SLQGSIPEAFQLMVSLRFLYLTSN-ELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 272 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
+|++++| .+++.....+..+++|++|++++| .+++.....++++++|+.|+++++
T Consensus 179 ~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 6666554 344444455555666666666653 344444445555666666666655
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.9e-18 Score=175.41 Aligned_cols=315 Identities=21% Similarity=0.158 Sum_probs=206.5
Q ss_pred CcEEEEEcCCCCCCCCCCCccee----ecCccccCCCCCCEEEccCCCCCCCC---CccccC-CCCCCCEEEccCCCCCc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKG----TISPALLKLHDLRHLDLSNNHFGGSP---LPEFIG-SLSRLRYLNLSCGTSLL 154 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~-~l~~L~~L~L~~n~~~~ 154 (524)
.+++.|+|+++ .++. .+...+..+++|++|||++|.++..+ +...+. ...+|++|+|++|.++.
T Consensus 27 ~~l~~L~L~~~--------~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~ 98 (460)
T d1z7xw1 27 QQCQVVRLDDC--------GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98 (460)
T ss_dssp TTCSEEEEESS--------CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred CCCCEEEeCCC--------CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence 45678999986 4442 44566789999999999999986431 222332 24579999999999875
Q ss_pred c----CCccccCCCCCcEEEccCCCCCCCCCc--------------------------------hhcCCCCCCcEEEccC
Q 009835 155 K----VPRPFQYLSGLVYLHLENSNLFSLGSL--------------------------------QWLSHLSSLRHLDLSY 198 (524)
Q Consensus 155 ~----~p~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------~~~~~l~~L~~L~Ls~ 198 (524)
. ++..+..+++|++|++++|.+...+.. ..+.....++.+++++
T Consensus 99 ~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~ 178 (460)
T d1z7xw1 99 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178 (460)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred cccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccc
Confidence 4 456678899999999999975321000 1122234555555544
Q ss_pred CC-----------------------------CCCC--CCchHhhhcccCCCEEEeeCCCCCCCCCC--chhhhcccCccc
Q 009835 199 IN-----------------------------LTKS--SDWFQVVAKLRSLKTLVLHSCALPPINPS--SIWHFNLSTSIE 245 (524)
Q Consensus 199 n~-----------------------------l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~ 245 (524)
+. +... ......+...+.++.+++.+|.+...... ..........++
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~ 258 (460)
T d1z7xw1 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 258 (460)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred cccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccc
Confidence 33 2221 01123445677888888888765321110 012223337899
Q ss_pred EEEccCCCCCCCCCCchh---hhccccccEEEeeccccccccchhhh-----cccccceEeecCcccccccch----hhc
Q 009835 246 TLDLSDNNLPSSSVYPWL---FNLSRNIQYLNLGFNSLQGSIPEAFQ-----LMVSLRFLYLTSNELEGGIPK----FFG 313 (524)
Q Consensus 246 ~L~L~~n~l~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~p~----~l~ 313 (524)
.+++++|.+.. ...... ....+.++.+++++|.+++.....+. ....|+.+++++|.++..... .+.
T Consensus 259 ~l~l~~n~i~~-~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~ 337 (460)
T d1z7xw1 259 TLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 337 (460)
T ss_dssp EEECTTSCCCH-HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccc
Confidence 99999998854 111111 12334899999999998754333332 345799999999998865433 345
Q ss_pred CCCCCCEEEccCCCCCCchhHHHHh-ccCCCCCCCccEEEcCCCCCccCC----CC-CCCCCCCcEEEccCCcCccccch
Q 009835 314 KMCSLNRLCLPYNKLSGDLSEMIQN-LSGGCTMNSLEGVCLEGNDITGPL----PD-LGGFSSLKILVLGENRLNGTIDK 387 (524)
Q Consensus 314 ~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~~~~~~~L~~L~Ls~n~l~~~~----~~-~~~l~~L~~L~Ls~N~l~~~~p~ 387 (524)
..++|++|+|++|++++.....+.. +. ...+.|++|+|++|.++... .. +..+++|++|+|++|+++.....
T Consensus 338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~ 415 (460)
T d1z7xw1 338 QNRFLLELQISNNRLEDAGVRELCQGLG--QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415 (460)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHT--STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred cccchhhhheeeecccCcccchhhhhhh--cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHH
Confidence 6679999999999997654444432 11 11347999999999998532 22 56779999999999999865443
Q ss_pred hh----h-cCCCCCEEECcCCcCeee
Q 009835 388 SL----S-QLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 388 ~~----~-~l~~L~~L~l~~N~l~~~ 408 (524)
.+ . +...|+.|++.+|.+...
T Consensus 416 ~l~~~l~~~~~~L~~l~l~~~~~~~~ 441 (460)
T d1z7xw1 416 QLVESVRQPGCLLEQLVLYDIYWSEE 441 (460)
T ss_dssp HHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred HHHHHHHhCCCccCEEECCCCCCCHH
Confidence 33 2 334799999999998753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1.1e-15 Score=136.81 Aligned_cols=163 Identities=25% Similarity=0.312 Sum_probs=92.0
Q ss_pred EccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCC
Q 009835 146 NLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 146 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 225 (524)
.++.+.+++.++ ...+.++++|++++|.+.++.. +..+++|++|++++|.+++.+ .+.++++|++|++++|
T Consensus 24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l~~---l~~l~nL~~L~Ls~N~l~~~~----~l~~l~~L~~L~l~~n 94 (199)
T d2omxa2 24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNN 94 (199)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSS
T ss_pred HhCCCCCCCccC--HHHhcCCCEEECCCCCCCCccc---cccCCCcCcCccccccccCcc----cccCCccccccccccc
Confidence 444455554432 2356778888888887776543 667777888888887776653 3667777777777777
Q ss_pred CCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
.+....+ +... +.|+.|++++|.+.. .+.+... ++|+.|++++|++.. ++ .+..+++|+.|++++|+++
T Consensus 95 ~~~~~~~----l~~l-~~L~~L~l~~~~~~~---~~~~~~l-~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~ 163 (199)
T d2omxa2 95 QIADITP----LANL-TNLTGLTLFNNQITD---IDPLKNL-TNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVT 163 (199)
T ss_dssp CCCCCGG----GTTC-TTCSEEECCSSCCCC---CGGGTTC-TTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCC
T ss_pred ccccccc----cccc-ccccccccccccccc---ccccchh-hhhHHhhhhhhhhcc-cc-ccccccccccccccccccc
Confidence 6554321 2223 666666666665522 1222222 256666666555542 22 3445555555555555555
Q ss_pred cccchhhcCCCCCCEEEccCCCCCC
Q 009835 306 GGIPKFFGKMCSLNRLCLPYNKLSG 330 (524)
Q Consensus 306 ~~~p~~l~~l~~L~~L~Ls~n~l~~ 330 (524)
+. + .++++++|++|++++|++++
T Consensus 164 ~l-~-~l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 164 DL-K-PLANLTTLERLDISSNKVSD 186 (199)
T ss_dssp CC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred CC-c-cccCCCCCCEEECCCCCCCC
Confidence 32 1 24555555555555555543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.4e-16 Score=151.11 Aligned_cols=214 Identities=21% Similarity=0.196 Sum_probs=148.2
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCC-CCCCCCCchhcCCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENS-NLFSLGSLQWLSHLS 189 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~ 189 (524)
.....+|++||++++.++...+...+..+++|++|+|++|.+.+..+..++++++|++|+++++ .+++........+++
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~ 121 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence 3455689999999998876545667889999999999999988877888899999999999985 454322223346789
Q ss_pred CCcEEEccCCC-CCCCCCchHhhhc-ccCCCEEEeeCCC--CCCCCCCchhhhcccCcccEEEccCCC-CCCCCCCchhh
Q 009835 190 SLRHLDLSYIN-LTKSSDWFQVVAK-LRSLKTLVLHSCA--LPPINPSSIWHFNLSTSIETLDLSDNN-LPSSSVYPWLF 264 (524)
Q Consensus 190 ~L~~L~Ls~n~-l~~~~~~~~~l~~-l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~ 264 (524)
+|++|+++++. +++. .....+.. .++|+.|+++++. ++.... ..+...+++|++|++++|. +++ .....+.
T Consensus 122 ~L~~L~ls~c~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l--~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~ 197 (284)
T d2astb2 122 RLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKSDL--STLVRRCPNLVHLDLSDSVMLKN-DCFQEFF 197 (284)
T ss_dssp TCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHHHH--HHHHHHCTTCSEEECTTCTTCCG-GGGGGGG
T ss_pred hccccccccccccccc-cchhhhcccccccchhhhcccccccccccc--cccccccccccccccccccCCCc-hhhhhhc
Confidence 99999999864 3322 11223433 4789999998753 322111 1233344899999999875 544 5556666
Q ss_pred hccccccEEEeecc-ccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCch
Q 009835 265 NLSRNIQYLNLGFN-SLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL 332 (524)
Q Consensus 265 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 332 (524)
+.. +|++|++++| .+++.....++.+++|+.|+++++--.+.+......+|+|+ +..+.+++..
T Consensus 198 ~~~-~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~ 262 (284)
T d2astb2 198 QLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIA 262 (284)
T ss_dssp GCT-TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTT
T ss_pred ccC-cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCC
Confidence 654 9999999995 67777677788999999999998832222333234455554 4555555443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=5.8e-16 Score=151.24 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=25.9
Q ss_pred cCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCC
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGT 151 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~ 151 (524)
+...+.+...|++|+|++|.+.... +...+...++|+.|+++++.
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~ 70 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence 3445566677777777777664431 22344555666666666543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=4.9e-15 Score=121.33 Aligned_cols=103 Identities=23% Similarity=0.231 Sum_probs=53.2
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
|+|+|++|+++. ++ .++.+++|++|++++|.+. .+|+.++.+++|++|++++|.+++++ .+..+++|++|+++
T Consensus 1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~---~~~~l~~L~~L~l~ 73 (124)
T d1dcea3 1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLC 73 (124)
T ss_dssp SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECC
T ss_pred CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC---ccccccccCeEECC
Confidence 345555555553 22 2455555555555555554 33445555555555555555555432 24555555555555
Q ss_pred CCCCCCCCCchHhhhcccCCCEEEeeCCCCC
Q 009835 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228 (524)
Q Consensus 198 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 228 (524)
+|.++..+. ...+..+++|++|++++|.+.
T Consensus 74 ~N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 74 NNRLQQSAA-IQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SSCCCSSST-TGGGGGCTTCCEEECTTSGGG
T ss_pred CCccCCCCC-chhhcCCCCCCEEECCCCcCC
Confidence 555554432 234445555555555555443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.1e-15 Score=128.75 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=79.9
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.+.+..+|++|||++|+|+. ++..+..+++|++|+|++|.+... +.|..+++|++|++++|.+..++. ..+..++
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~-~~~~~l~ 87 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALP 87 (162)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCT
T ss_pred hccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCc-ccccccc
Confidence 35667778888888888876 556666778888888888877654 347777888888888888775543 3355677
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCC
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI 230 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 230 (524)
+|++|++++|.++..++ ...+..+++|++|++++|.+...
T Consensus 88 ~L~~L~L~~N~i~~~~~-l~~l~~l~~L~~L~l~~N~i~~~ 127 (162)
T d1a9na_ 88 DLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNK 127 (162)
T ss_dssp TCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGS
T ss_pred ccccceecccccccccc-ccccccccccchhhcCCCccccc
Confidence 77777777777766543 34566667777777777665443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.54 E-value=3.1e-15 Score=145.98 Aligned_cols=257 Identities=16% Similarity=0.083 Sum_probs=128.4
Q ss_pred CccccCCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCCCCCCCCC---------chhcCCCCCCcEEEccC
Q 009835 132 LPEFIGSLSRLRYLNLSCGTSLLK----VPRPFQYLSGLVYLHLENSNLFSLGS---------LQWLSHLSSLRHLDLSY 198 (524)
Q Consensus 132 ~p~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~~l~~L~~L~Ls~ 198 (524)
+...+.....|++|+|++|.+... +...+...++|+.|+++++....... ...+..+++|++|+|++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 445566678888888888877543 23345667788888888765542221 12345667777777777
Q ss_pred CCCCCCC--CchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEee
Q 009835 199 INLTKSS--DWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLG 276 (524)
Q Consensus 199 n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 276 (524)
|.++... .+...+...++|++|++++|.+...... .+... +..+. ........+.|+.++++
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~--~l~~~---l~~~~-----------~~~~~~~~~~L~~l~l~ 166 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--KIARA---LQELA-----------VNKKAKNAPPLRSIICG 166 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--HHHHH---HHHHH-----------HHHHHHTCCCCCEEECC
T ss_pred cccccccccchhhhhcccccchheecccccccccccc--ccccc---ccccc-----------cccccccCcccceeecc
Confidence 7766542 2233455566777777776655321110 00000 00000 00000111244445555
Q ss_pred ccccccc----cchhhhcccccceEeecCcccccc-----cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 277 FNSLQGS----IPEAFQLMVSLRFLYLTSNELEGG-----IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 277 ~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
+|.++.. +...+...+.|+.|++++|.+... +...+..+++|+.|++++|.++......+... +...++
T Consensus 167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~--l~~~~~ 244 (344)
T d2ca6a1 167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA--LKSWPN 244 (344)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH--GGGCTT
T ss_pred cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc--cccccc
Confidence 4444321 122233444555555555554421 12234445555666666555543322222110 012235
Q ss_pred ccEEEcCCCCCccCCCC-----C--CCCCCCcEEEccCCcCcccc----chhhh-cCCCCCEEECcCCcCe
Q 009835 348 LEGVCLEGNDITGPLPD-----L--GGFSSLKILVLGENRLNGTI----DKSLS-QLLKLESLSLGRNSFT 406 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-----~--~~l~~L~~L~Ls~N~l~~~~----p~~~~-~l~~L~~L~l~~N~l~ 406 (524)
|++|+|++|.+++.... + ...+.|++|++++|+++... ...+. +.++|+.|++++|++.
T Consensus 245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 56666666655432111 1 12356777777777776432 23332 4677888888888775
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3.6e-14 Score=116.09 Aligned_cols=120 Identities=27% Similarity=0.247 Sum_probs=100.1
Q ss_pred EEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCC
Q 009835 87 VLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 166 (524)
Q Consensus 87 ~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 166 (524)
.|+|+++ .++ .++ .+..+++|++|++++|.++. +|..++.+++|++|++++|.+.+. | .+.++++|
T Consensus 2 ~L~Ls~n--------~l~-~l~-~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L 67 (124)
T d1dcea3 2 VLHLAHK--------DLT-VLC-HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV-D-GVANLPRL 67 (124)
T ss_dssp EEECTTS--------CCS-SCC-CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSC
T ss_pred EEEcCCC--------CCC-CCc-ccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccccc-C-cccccccc
Confidence 5788885 665 334 48999999999999999986 788899999999999999999864 3 59999999
Q ss_pred cEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCch-HhhhcccCCCEE
Q 009835 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTL 220 (524)
Q Consensus 167 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L 220 (524)
++|++++|++.+++....+..+++|++|++++|.++..+... .....+|+|+.|
T Consensus 68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 999999999998877677899999999999999998764322 344557777765
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.7e-14 Score=121.88 Aligned_cols=129 Identities=25% Similarity=0.239 Sum_probs=108.0
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.++++|+|+++ .++ .++..+..+++|++|+|++|.++. + +.+..+++|++|++++|.+....+..+..
T Consensus 18 ~~lr~L~L~~n--------~I~-~i~~~~~~l~~L~~L~Ls~N~i~~--l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~ 85 (162)
T d1a9na_ 18 VRDRELDLRGY--------KIP-VIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 85 (162)
T ss_dssp TSCEEEECTTS--------CCC-SCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred CcCcEEECCCC--------CCC-ccCccccccccCCEEECCCCCCCc--c-CCcccCcchhhhhcccccccCCCcccccc
Confidence 36789999996 554 346666789999999999999986 4 35889999999999999998877777788
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc-hHhhhcccCCCEEEee
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW-FQVVAKLRSLKTLVLH 223 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~ 223 (524)
+++|++|++++|.+..++....+..+++|++|++++|.++..+.+ ...+..+++|+.||-.
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence 999999999999999877667789999999999999999877542 2357888999988743
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.27 E-value=1.9e-13 Score=121.65 Aligned_cols=120 Identities=25% Similarity=0.320 Sum_probs=65.3
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
+|++|++++|+++. ++ .+..+++|+.|++++|.++ .+|.....+++|++|++++|.++.. ..+..++ +|
T Consensus 49 ~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~------~L 117 (198)
T d1m9la_ 49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLV------NL 117 (198)
T ss_dssp TCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH------HS
T ss_pred ccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccc------cc
Confidence 66666666666653 32 3555666666666666665 3343333344566666666666542 2244433 56
Q ss_pred cEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcCccccch----------hhhcCCCCCEEE
Q 009835 349 EGVCLEGNDITGPLP--DLGGFSSLKILVLGENRLNGTIDK----------SLSQLLKLESLS 399 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l~~L~~L~ 399 (524)
+.|++++|+++.... .+..+++|+.|++++|.+....+. .+..+|+|+.||
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 666666666654321 255566666666666665433221 145566777665
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.24 E-value=8.8e-13 Score=117.18 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=24.8
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l 328 (524)
+|+.|++++|.++. + ..+..+++|+.|++++|+++.... ..+..+++|++|++++|++
T Consensus 94 ~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 94 TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred cccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence 44444444444442 1 123444444444444444442111 2344444555555554443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.6e-11 Score=104.42 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=72.5
Q ss_pred cceEeecCcccccccchhhcCCCCCCEEEccCC-CCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCC
Q 009835 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN-KLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSL 371 (524)
Q Consensus 294 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L 371 (524)
.+.++.+++.+. ..|..+..+++|++|++++| .++...+..|..++ +|+.|++++|+++.+.+. |..+++|
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~------~L~~L~Ls~N~l~~i~~~~f~~l~~L 82 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG------ELRNLTIVKSGLRFVAPDAFHFTPRL 82 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCC------CCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhcccc------ccCcceeeccccCCcccccccccccc
Confidence 445566666655 44555666667777777554 36655556665544 677777777777766665 7778888
Q ss_pred cEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeC
Q 009835 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKI 409 (524)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 409 (524)
++|+|++|+++...+..+ ...+|+.|+|++|++.+.+
T Consensus 83 ~~L~Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C 119 (156)
T d2ifga3 83 SRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLHCSC 119 (156)
T ss_dssp CEEECCSSCCSCCCSTTT-CSCCCCEEECCSSCCCCCG
T ss_pred cceeccCCCCcccChhhh-ccccccccccCCCcccCCc
Confidence 888888888884444444 4447888999999887655
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.9e-11 Score=101.29 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=42.4
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCCCEEEccCCC-CCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEE
Q 009835 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGT-SLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLD 195 (524)
Q Consensus 117 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 195 (524)
.+.++.+++.+.. .|..+..+++|++|++++|+ +....+.+|.++++|++|++++|+++.++. ..|..+++|++|+
T Consensus 10 ~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~ 86 (156)
T d2ifga3 10 SSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLN 86 (156)
T ss_dssp SSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEE
T ss_pred CCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-cccccccccccee
Confidence 3445555555544 34455555555555554443 444444455555555555555555554432 3344444444454
Q ss_pred ccCCCCCCC
Q 009835 196 LSYINLTKS 204 (524)
Q Consensus 196 Ls~n~l~~~ 204 (524)
|++|+++..
T Consensus 87 Ls~N~l~~l 95 (156)
T d2ifga3 87 LSFNALESL 95 (156)
T ss_dssp CCSSCCSCC
T ss_pred ccCCCCccc
Confidence 444444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=2e-08 Score=85.36 Aligned_cols=47 Identities=23% Similarity=0.099 Sum_probs=25.7
Q ss_pred chhhhcccccceEeecCccccccc--chhhcCCCCCCEEEccCCCCCCc
Q 009835 285 PEAFQLMVSLRFLYLTSNELEGGI--PKFFGKMCSLNRLCLPYNKLSGD 331 (524)
Q Consensus 285 ~~~~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~ 331 (524)
+.....+++|++|+|++|+++... +..+..+++|+.|++++|.++..
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l 106 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 106 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCG
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccc
Confidence 333445666666666666665322 23345556666666666666543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=4.2e-08 Score=83.23 Aligned_cols=100 Identities=22% Similarity=0.099 Sum_probs=62.4
Q ss_pred ccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCch--hHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCC
Q 009835 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDL--SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFS 369 (524)
Q Consensus 293 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~ 369 (524)
.+..++..++... .++.....+++|++|+|++|+|+... +..+..++ +|+.|++++|.++...+- .....
T Consensus 43 ~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~------~L~~L~Ls~N~i~~l~~l~~l~~~ 115 (162)
T d1koha1 43 IDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP------NLKILNLSGNELKSERELDKIKGL 115 (162)
T ss_dssp CCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHST------TCCCCCCTTSCCCCGGGHHHHTTC
T ss_pred chhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCC------cccccccccCccccchhhhhhhcc
Confidence 3334444443332 34444556778888888888887643 34455554 788888888888764432 33345
Q ss_pred CCcEEEccCCcCccccc-------hhhhcCCCCCEEE
Q 009835 370 SLKILVLGENRLNGTID-------KSLSQLLKLESLS 399 (524)
Q Consensus 370 ~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~ 399 (524)
.|+.|++++|.+..... ..+..+|+|+.||
T Consensus 116 ~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 116 KLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp CCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred ccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 67888888888875443 2255678888776
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.04 E-value=1.7e-06 Score=73.34 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=23.2
Q ss_pred CCCCCCCcEEEccCCcCccc-------cchhhhcCCCCCEEECcCCc
Q 009835 365 LGGFSSLKILVLGENRLNGT-------IDKSLSQLLKLESLSLGRNS 404 (524)
Q Consensus 365 ~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~l~~N~ 404 (524)
+...++|++|++++|.+... +...+...++|+.|+++.+.
T Consensus 96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 34456666666666654321 33445556777777776654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.85 E-value=8e-06 Score=69.06 Aligned_cols=90 Identities=12% Similarity=0.002 Sum_probs=42.2
Q ss_pred hcccccceEeecCccccc----ccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC--
Q 009835 289 QLMVSLRFLYLTSNELEG----GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL-- 362 (524)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-- 362 (524)
...+.|+.|+|++|.+.. .+...+...+.|++|+|++|.+++.....+... +...++|++|++++|.+....
T Consensus 41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a--L~~n~sL~~L~l~~n~~~~~g~~ 118 (167)
T d1pgva_ 41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS--TLVTQSIVEFKADNQRQSVLGNQ 118 (167)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH--TTTTCCCSEEECCCCSSCCCCHH
T ss_pred hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH--HHhCCcCCEEECCCCcCCCccHH
Confidence 334445555555555442 122233444555666666665554433333221 122335666666555443211
Q ss_pred -----CC-CCCCCCCcEEEccCCc
Q 009835 363 -----PD-LGGFSSLKILVLGENR 380 (524)
Q Consensus 363 -----~~-~~~l~~L~~L~Ls~N~ 380 (524)
.. +...++|+.|+++.+.
T Consensus 119 ~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 119 VEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCccEeeCcCCC
Confidence 01 3345667777776654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.67 E-value=9.1e-06 Score=68.61 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=61.2
Q ss_pred cccccceEeecC-cccccc----cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC--
Q 009835 290 LMVSLRFLYLTS-NELEGG----IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL-- 362 (524)
Q Consensus 290 ~l~~L~~L~Ls~-n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-- 362 (524)
+.++|++|++++ +.++.. +...+...+.|++|++++|.++......+...- ...++++.+++++|.++...
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l--~~~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML--KVNNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH--HHCSSCCEEECCSSCCCHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHH--hhcccchhhhhccccccchhHH
Confidence 445556666655 234321 223344556666666666666544333332211 11236666666666665322
Q ss_pred ---CCCCCCCCCcEEEc--cCCcCccc----cchhhhcCCCCCEEECcCCcC
Q 009835 363 ---PDLGGFSSLKILVL--GENRLNGT----IDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 363 ---~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~l~~N~l 405 (524)
..+...++|+.++| ++|.+... +...+...+.|+.|+++.+..
T Consensus 93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 12556677776555 45666542 344566778888888877654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.39 E-value=7.2e-06 Score=69.30 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=55.2
Q ss_pred cccCCCCCCEEEccC-CCCCCCC---CccccCCCCCCCEEEccCCCCCccC----CccccCCCCCcEEEccCCCCCCCCC
Q 009835 110 ALLKLHDLRHLDLSN-NHFGGSP---LPEFIGSLSRLRYLNLSCGTSLLKV----PRPFQYLSGLVYLHLENSNLFSLGS 181 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~-n~l~~~~---~p~~l~~l~~L~~L~L~~n~~~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~ 181 (524)
...+.+.|++|+|++ +.++... +..++...++|++|+|++|.+.... .+.+...+.++.+++++|.+...+.
T Consensus 12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~ 91 (166)
T d1io0a_ 12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 91 (166)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence 334567777777776 3454331 2233455666777777766664321 2233445666666666665542211
Q ss_pred c---hhcCCCCCCcEEEcc--CCCCCCC--CCchHhhhcccCCCEEEeeC
Q 009835 182 L---QWLSHLSSLRHLDLS--YINLTKS--SDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 182 ~---~~~~~l~~L~~L~Ls--~n~l~~~--~~~~~~l~~l~~L~~L~L~~ 224 (524)
. ..+...++|+.++|+ +|.+... ..+...+...++|++|++..
T Consensus 92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 1 223444555554442 3333221 11223344445555555443
|