Citrus Sinensis ID: 009839

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
MDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH
ccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHcHHccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHcccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHcccEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccHHcccccccccccccccccccccEcc
mdevgladGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSkritagvsqdgacgrqpddssviagaqsrgsrsdgTKKLQSAVRATESALNIEQKRLQKLKELDEEnqslklssnedfsgyEKDISRLIRQIRGLKDNVRTKASELVKIlnnplcpqsislaTFSKKVVsrcetpddnvamSCGYVIVLVASQVPQVMDILLGEFHRAciytvpkhivfseaaFESEEAYYKTIGyreedgkiESLENYLSRLKSYMRLYAALIQTeipgvqnahgLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDkkfleepegrtlqapplsstlvpeadyqeygryhqyqeygyqyh
mdevgladgalvelthqhqlgvKEEIRNLISTLETqliseneqsnsalaqvekdrdmrremdrKNDTVYQRKIAEaldnhltavqrdhelksqieerkirsdaayeEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAereaaenskritagvsqdgacgrqPDDSSVIagaqsrgsrsdgtkKLQSAVRATESALNIEQKRLQKLKEldeenqslklssnedfsgyeKDISRLIRQIRGLKDNVRTKASELVKilnnplcpqsiSLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIgyreedgkieSLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKfleepegrtlqapplsstlvpEADYQEYGRYHQYQEYGYQYH
MDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVekdrdmrremdrkndTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDaayeeakrkeraLQEEKIRQEKVKAEAEMQaklraeeakraaleaekraakeaaereaaeNSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVfseaafeseeaYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADyqeygryhqyqeygyqyh
********GALVELTHQHQLGVKEEIRNLISTL**********************************************************************************************************************************************************************************************************************DISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFL********************ADYQEYGRYHQYQEYGY***
**************************************************************************************************************************************************************************************************************VRATESALNIEQKRLQK****************************************************NPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIP**QNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLN**************AEIQYYIEDKKFLE**********************QEYGRYHQYQ**G**Y*
MDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDA***********LQEEKIRQEKVKAEAEMQAKLRAE****************************ITAGVSQDGACGRQPDDSSV************************ESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH
****GLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKER*LQ*E*******K************************************************************IAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH
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MDEVGLADGALVELTHQHQLGVxxxxxxxxxxxxxxxxxxxxxSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAxxxxxxxxxxxxxxxxxxxxxDEENQSLKLSSNEDxxxxxxxxxxxxxxxxxxxxxVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query524 2.2.26 [Sep-21-2011]
Q5RAS2698 Nucleoporin GLE1 OS=Pongo yes no 0.322 0.242 0.356 6e-26
Q53GS7698 Nucleoporin GLE1 OS=Homo yes no 0.324 0.243 0.354 6e-26
Q4KLN4698 Nucleoporin GLE1 OS=Rattu no no 0.326 0.244 0.352 1e-25
Q8R322699 Nucleoporin GLE1 OS=Mus m yes no 0.324 0.243 0.349 2e-25
Q3ZBK7698 Nucleoporin GLE1 OS=Bos t yes no 0.324 0.243 0.344 2e-24
Q6DRB1695 Nucleoporin GLE1 OS=Danio yes no 0.326 0.246 0.342 2e-23
Q9V4W1677 Nucleoporin GLE1 OS=Droso yes no 0.383 0.296 0.283 3e-15
>sp|Q5RAS2|GLE1_PONAB Nucleoporin GLE1 OS=Pongo abelii GN=GLE1 PE=2 SV=1 Back     alignment and function desciption
 Score =  119 bits (298), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 16/185 (8%)

Query: 309 YVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREED 364
           + I +VAS +    P+V D++L   H+ C Y+VP +  F E    + E Y + +GY+ +D
Sbjct: 500 FPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVKD 557

Query: 365 GKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANIY 420
            K+E  +N+L R+   +RLYAA+IQ   P       + HGL  GW WLA+ LN  P +  
Sbjct: 558 SKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSDV 617

Query: 421 TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIED 480
           TA  L  FL++ G AL K+Y+ QF K+L  I +++   ++A   S       ++  +I  
Sbjct: 618 TATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSS------GQMGSFIRL 671

Query: 481 KKFLE 485
           K+FLE
Sbjct: 672 KQFLE 676
Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC).
Pongo abelii (taxid: 9601)
>sp|Q53GS7|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KLN4|GLE1_RAT Nucleoporin GLE1 OS=Rattus norvegicus GN=Gle1 PE=2 SV=1 Back     alignment and function description
>sp|Q8R322|GLE1_MOUSE Nucleoporin GLE1 OS=Mus musculus GN=Gle1 PE=2 SV=2 Back     alignment and function description
>sp|Q3ZBK7|GLE1_BOVIN Nucleoporin GLE1 OS=Bos taurus GN=GLE1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DRB1|GLE1_DANRE Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2 Back     alignment and function description
>sp|Q9V4W1|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster GN=GLE1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
296081385 701 unnamed protein product [Vitis vinifera] 0.977 0.730 0.614 1e-174
359473158 680 PREDICTED: uncharacterized protein LOC10 0.977 0.752 0.617 1e-168
147859341 745 hypothetical protein VITISV_036820 [Viti 0.967 0.680 0.596 1e-163
255547998613 Nucleoporin GLE1, putative [Ricinus comm 0.929 0.794 0.603 1e-160
449435436 641 PREDICTED: uncharacterized protein LOC10 0.967 0.790 0.580 1e-151
356538127 629 PREDICTED: uncharacterized protein LOC10 0.902 0.751 0.554 1e-144
357463209599 Nucleoporin GLE1 [Medicago truncatula] g 0.872 0.762 0.534 1e-139
15222184611 embryo defective 1745 protein [Arabidops 0.921 0.790 0.495 1e-127
4850395 635 EST gb|N37870 comes from this gene [Arab 0.921 0.760 0.495 1e-126
297849694614 EMB1745 [Arabidopsis lyrata subsp. lyrat 0.917 0.783 0.484 1e-124
>gi|296081385|emb|CBI16818.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 324/527 (61%), Positives = 393/527 (74%), Gaps = 15/527 (2%)

Query: 1   MDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRRE 60
           MD+ G+A+GA  ELTH+HQL VKEE+R  IS LET L  E ++S SA+ +VEK  + RRE
Sbjct: 164 MDKAGVAEGAFFELTHEHQLAVKEEVRTQISVLETDLTHERKKSTSAIVRVEKYIEARRE 223

Query: 61  MDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKI 120
           MDRK D  YQR IAEALDNH+TAVQRDHE +SQIEER+IR++AA+EEA RKE+ALQEEK+
Sbjct: 224 MDRKLDIQYQRNIAEALDNHMTAVQRDHEHRSQIEERRIRNEAAFEEA-RKEKALQEEKL 282

Query: 121 RQEKVKAEA----EMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGA 176
           RQEK KAEA    E+ AK RAEEAK AALE E+RAAKEAAERE    S R    V+   A
Sbjct: 283 RQEKAKAEAKVRLELAAKKRAEEAKIAALEDERRAAKEAAEREGIGASTRAATEVAPKEA 342

Query: 177 CGRQPDDSSVIAGAQSRGSRSDGTKKLQSA---VRATESALNIEQKRLQKLKELDEENQS 233
            G Q D S  I  AQ  GS++DGTKK QSA   +++ ESAL +EQ+RLQK KE DE+ Q+
Sbjct: 343 TGHQRDASLGILNAQLNGSKTDGTKKAQSAGNILKSAESALKLEQERLQKYKEFDEKTQA 402

Query: 234 LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVV 293
           L  SSN+DF  +E+  +R IRQI G K+NVRTK + L+K+ N+PLCPQ I++A F KKVV
Sbjct: 403 LGQSSNKDFQRHEQQFARRIRQISGSKENVRTKGNALIKMFNDPLCPQPINVAIFVKKVV 462

Query: 294 SRCETPDDN-VAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEE 352
           S  E    + V  +CG+VIV VASQVP  MD+LL E HR CIYTVPKHI +S++AF+S+E
Sbjct: 463 SYFEVDQPSKVTYACGHVIVFVASQVPYAMDLLLAELHRVCIYTVPKHIDYSKSAFKSKE 522

Query: 353 AYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFL 412
            YYK IGYREE+GKIE  E+YL RL  YM+LYAAL+QTE  GV+N HGLKEGWAWLARFL
Sbjct: 523 DYYKMIGYREENGKIERTEDYLKRLACYMKLYAALVQTEADGVKNPHGLKEGWAWLARFL 582

Query: 413 NALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAR----EDSKLN 468
           NALPAN+YTAVAL  FLQ+AGFALF+KY+SQFRKIL  I  NFL ALKA+    ++ KL 
Sbjct: 583 NALPANVYTAVALEVFLQVAGFALFRKYRSQFRKILKVISGNFLVALKAQGEKVKEPKLK 642

Query: 469 LVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQ 515
            VI  IQYY+E  +FL+EPEG  +Q   LS ++ PE DY +   YH 
Sbjct: 643 QVIGNIQYYVEKNEFLQEPEGWRMQGSLLSGSMAPELDYPD--SYHH 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359473158|ref|XP_002282194.2| PREDICTED: uncharacterized protein LOC100245667 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859341|emb|CAN81849.1| hypothetical protein VITISV_036820 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547998|ref|XP_002515056.1| Nucleoporin GLE1, putative [Ricinus communis] gi|223546107|gb|EEF47610.1| Nucleoporin GLE1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435436|ref|XP_004135501.1| PREDICTED: uncharacterized protein LOC101216938 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356538127|ref|XP_003537556.1| PREDICTED: uncharacterized protein LOC100802744 [Glycine max] Back     alignment and taxonomy information
>gi|357463209|ref|XP_003601886.1| Nucleoporin GLE1 [Medicago truncatula] gi|355490934|gb|AES72137.1| Nucleoporin GLE1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15222184|ref|NP_172771.1| embryo defective 1745 protein [Arabidopsis thaliana] gi|110737727|dbj|BAF00802.1| hypothetical protein [Arabidopsis thaliana] gi|332190851|gb|AEE28972.1| embryo defective 1745 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4850395|gb|AAD31065.1|AC007357_14 EST gb|N37870 comes from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297849694|ref|XP_002892728.1| EMB1745 [Arabidopsis lyrata subsp. lyrata] gi|297338570|gb|EFH68987.1| EMB1745 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
TAIR|locus:2031835611 GLE1 [Arabidopsis thaliana (ta 0.545 0.468 0.41 1.3e-84
UNIPROTKB|B3KMG0444 GLE1 "Nucleoporin GLE1" [Homo 0.496 0.585 0.290 2.1e-20
UNIPROTKB|F1RR80698 GLE1 "Uncharacterized protein" 0.557 0.418 0.282 2.9e-20
ZFIN|ZDB-GENE-040831-4717 gle1 "GLE1 RNA export mediator 0.337 0.246 0.335 7e-20
UNIPROTKB|E2RSW4697 GLE1 "Uncharacterized protein" 0.570 0.428 0.289 8.2e-20
UNIPROTKB|Q53GS7698 GLE1 "Nucleoporin GLE1" [Homo 0.496 0.372 0.290 8.3e-20
RGD|1307329698 Gle1 "GLE1 RNA export mediator 0.551 0.414 0.282 9.5e-20
RGD|1310843697 Gle1-ps1 "GLE1 RNA export medi 0.389 0.292 0.327 1.8e-19
MGI|MGI:1921662699 Gle1 "GLE1 RNA export mediator 0.503 0.377 0.290 1.8e-19
UNIPROTKB|Q3ZBK7698 GLE1 "Nucleoporin GLE1" [Bos t 0.503 0.378 0.286 6.8e-19
TAIR|locus:2031835 GLE1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 522 (188.8 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 123/300 (41%), Positives = 173/300 (57%)

Query:     1 MDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVXXXXXXXXX 60
             M+++GLA+ AL E+ + HQ  +K++IRN +S +ET++++E E S SA+A+V         
Sbjct:   123 MNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSLSAIARVEKYSETRKE 182

Query:    61 XXXXXXTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDXXXXXXXXXXXXLQEEKI 120
                     YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+             QEEKI
Sbjct:   183 VERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEEARRKERAHQEEKI 242

Query:   121 RQEKVKAEAEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKRITAGVSQDGACGRQ 180
             RQEK +AEA+M                               + K     +++  A    
Sbjct:   243 RQEKARAEAQM----LAKIRAEEEKKEVERKAAREVAEKEVADRKAAEQKLAEQKAVIES 298

Query:   181 PDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNE 240
                SS  + AQ+ G+          ++RA ESAL +E  RL+KL+EL+  NQSLK  SNE
Sbjct:   299 VTGSSATSNAQAGGN----------SIRAAESALILENHRLKKLEELETTNQSLKSRSNE 348

Query:   241 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPD 300
             +FS +EK I R+IRQI G KD+V  K +++VKI  +P CP SIS+A F+KK+V+  E P+
Sbjct:   349 NFSSFEKHIGRVIRQISGTKDSVSGKINDIVKIFKDPRCPVSISIAAFAKKMVTTKEKPN 408
GO:0005634 "nucleus" evidence=ISM
GO:0005643 "nuclear pore" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0005635 "nuclear envelope" evidence=IDA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=IMP
UNIPROTKB|B3KMG0 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR80 GLE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040831-4 gle1 "GLE1 RNA export mediator homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSW4 GLE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q53GS7 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307329 Gle1 "GLE1 RNA export mediator homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1310843 Gle1-ps1 "GLE1 RNA export mediator homolog (yeast), pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1921662 Gle1 "GLE1 RNA export mediator (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBK7 GLE1 "Nucleoporin GLE1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030727001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (517 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
pfam07817249 pfam07817, GLE1, GLE1-like protein 4e-71
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 1e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 2e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 3e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 8e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 1e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
TIGR02794346 TIGR02794, tolA_full, TolA protein 2e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 7e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-04
PRK05035695 PRK05035, PRK05035, electron transport complex pro 7e-04
COG5269379 COG5269, ZUO1, Ribosome-associated chaperone zuoti 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
PRK12472508 PRK12472, PRK12472, hypothetical protein; Provisio 0.003
>gnl|CDD|219595 pfam07817, GLE1, GLE1-like protein Back     alignment and domain information 
 Score =  227 bits (580), Expect = 4e-71
 Identities = 89/261 (34%), Positives = 129/261 (49%), Gaps = 21/261 (8%)

Query: 203 LQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN 262
            ++ +   +SA+ +   R  +LK+L    +          S     ++R+  ++  L   
Sbjct: 1   YKNKIEQIKSAVKLPLNRDPELKKLRFTLKRKINPKFGQLSNSSSQLARITNKLSQL--- 57

Query: 263 VRTKASELVKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVP 319
                  +    N+        L  F+KK+VS+ ET        A     V +L+ SQ P
Sbjct: 58  -------ISVAKNDHPLAYKWILNFFAKKIVSQAETEVAVKPEAAFPLAAVALLLLSQFP 110

Query: 320 QVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDG-KIESLENYLSRLK 378
           +  D+LL   H+ C Y VPKH  ++ +     E   K +GY+  DG K E   +YL R+ 
Sbjct: 111 EFGDLLLARLHKKCPYVVPKHPGYTCSI--DTEDGRKRMGYKRTDGGKWEDETSYLERMA 168

Query: 379 SYMRLYAALIQTEIPGVQNA---HGLKEGWAWLARFLNALPANI--YTAVALNAFLQLAG 433
             MRLYAA+IQTEIPG  N    HGL+ GW WLAR LN  PA +    A  L +FL+ AG
Sbjct: 169 GIMRLYAAIIQTEIPGGSNTTHPHGLEHGWRWLARILNTPPALLTNTHATILASFLEAAG 228

Query: 434 FALFKKYKSQFRKILDNIYDN 454
           FAL +KY  QFRK+L  I ++
Sbjct: 229 FALLRKYGKQFRKLLKVIQED 249

The members of this family are sequences that are similar to the human protein GLE1. This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm. Length = 249
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 524
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 100.0
PF07817256 GLE1: GLE1-like protein; InterPro: IPR012476 The m 100.0
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 97.06
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.71
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 96.3
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 96.16
PTZ00266 1021 NIMA-related protein kinase; Provisional 96.13
PTZ00121 2084 MAEBL; Provisional 96.1
PTZ00121 2084 MAEBL; Provisional 95.77
PTZ002661021 NIMA-related protein kinase; Provisional 95.43
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 94.29
COG3064387 TolA Membrane protein involved in colicin uptake [ 93.75
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 93.31
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 92.9
KOG1144 1064 consensus Translation initiation factor 5B (eIF-5B 92.86
KOG2891445 consensus Surface glycoprotein [General function p 91.18
KOG2140 739 consensus Uncharacterized conserved protein [Gener 90.59
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 89.51
PRK09510387 tolA cell envelope integrity inner membrane protei 87.62
COG4942420 Membrane-bound metallopeptidase [Cell division and 87.06
KOG3054299 consensus Uncharacterized conserved protein [Funct 86.69
COG3064387 TolA Membrane protein involved in colicin uptake [ 85.66
KOG2072988 consensus Translation initiation factor 3, subunit 85.08
PRK11637428 AmiB activator; Provisional 84.93
PF15346149 ARGLU: Arginine and glutamate-rich 1 84.85
PF15236157 CCDC66: Coiled-coil domain-containing protein 66 84.28
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 83.43
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 83.39
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=9.3e-82  Score=664.34  Aligned_cols=448  Identities=34%  Similarity=0.489  Sum_probs=389.6

Q ss_pred             CccccchhhHHHHHhhhcccchhHHHHHHHHHHHHHHHh-HHhhhhHHHHhhhhhhhhhHHHHHhhhHHHHHHHHHHHHH
Q 009839            1 MDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDN   79 (524)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-e~~~~~~~~~~~~k~~~~~~~~~~~~d~~~qr~~~e~~~~   79 (524)
                      |+++|+..++    .++|++.++.++|++++.+..-.++ ++..+++....++||.++|.+..+|+ ..+|+++.+.+|+
T Consensus       123 l~~L~~~~~~----~~q~~~~~~~~~~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~  197 (591)
T KOG2412|consen  123 LNKLGLKESA----INQRQTEIKSDIRAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDT  197 (591)
T ss_pred             HHHHHHhhcc----chhhhHhHHhhhhhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            4566666666    7999999999999999999888777 89999999999999999999999999 9999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839           80 HLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAERE  159 (524)
Q Consensus        80 ~~~~~q~~~e~~~q~ee~~~r~~~a~EEa~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~~~e~e  159 (524)
                      |+..+||.++..+||.+|+++++++-+||+|+.++.||++.+.+.+.++.+++++.+++|+++.   .++|++++..+  
T Consensus       198 el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqe---ee~ke~e~~~~--  272 (591)
T KOG2412|consen  198 ELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQE---EERKEAEEQAE--  272 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHH--
Confidence            9999999999999999999999999999999999999999999999999999999999988733   22233322111  


Q ss_pred             HhhhhhhhhccccccccCC-CCCCCcccccccccCCCCCCccchhhhh--HHhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 009839          160 AAENSKRITAGVSQDGACG-RQPDDSSVIAGAQSRGSRSDGTKKLQSA--VRATESALNIEQKRLQKLKELDEENQSLKL  236 (524)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~~--~~~~~~a~~~~~~R~~~Lkel~~~~~~lks  236 (524)
                           +.++...+++.... +++..+++.++       ++...+|||+  ..++.+.+....-+.++.-+          
T Consensus       273 -----k~~q~~~~~eek~a~qk~~~~~~~~~-------~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~----------  330 (591)
T KOG2412|consen  273 -----KEVQDPKAHEEKLAEQKAVIEKVTTS-------SASDSQMFWNSQDAIAQSKLDLVNPILKKDEE----------  330 (591)
T ss_pred             -----HHhcCchhccccccccccccccccCC-------chhHHHhhhhHHHHHHHHHHHHHhhhhhHHHH----------
Confidence                 12223333444433 55566666666       5578889998  47778888887777665444          


Q ss_pred             cccccccccccccccccccccCchhh-HHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHhcccCC---CCCcchhH
Q 009839          237 SSNEDFSGYEKDISRLIRQIRGLKDN-VRTKASELVKILNNPL-----CPQSISLATFSKKVVSRCETP---DDNVAMSC  307 (524)
Q Consensus       237 ~lkk~~~~~kRqI~~kIGQLtns~~q-I~~is~eL~~lL~~~~-----~p~~~~Ln~lAKaIV~QaEt~---~~~sAfPl  307 (524)
                       +++-..+++|.||+.|||||++..| |..|++.|.+++++.+     +.+.||+|+|||++|+|+|++   +|.+||||
T Consensus       331 -lk~~~~~~kr~in~~~~qis~~~~q~L~qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPl  409 (591)
T KOG2412|consen  331 -LKNYNQSLKRAINPPFSQISKSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPL  409 (591)
T ss_pred             -HHHHHHHHHhhcCCChhhhhhccHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence             4445568899999999999999988 9999999999998753     457899999999999999994   67899999


Q ss_pred             HHHHHHHHhhCccHHHHHHHHhhhhceeeccccccccccccccHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHH
Q 009839          308 GYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAA  386 (524)
Q Consensus       308 A~V~v~L~~~~Pef~diLlArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~-~dg~~Ese~~Yl~RMsGI~rLYAA  386 (524)
                      |.|++.||++||+|+|+|||||||+|||+||||++.      ++|.|.++|||+. |+|+||..|.|++||+||+|||||
T Consensus       410 a~V~l~i~~q~Pdv~dlllA~l~KkCP~~VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAA  483 (591)
T KOG2412|consen  410 AKVILYIWSQFPDVGDLLLARLHKKCPYVVPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAA  483 (591)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHhcCCccccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHH
Confidence            999999999999999999999999999999999864      3699999999997 678999999999999999999999


Q ss_pred             HHhcCCC----CCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 009839          387 LIQTEIP----GVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAR  462 (524)
Q Consensus       387 I~qt~~~----~~~nP~gi~~~W~WLARiLN~~P~~~ita~vL~afLevAG~~L~~~YG~QF~KLL~lI~~d~~p~l~~~  462 (524)
                      |+++++|    +.-||||+.++|.|||||||+.|.+++||++|.+||++||+.|++.||+||+|||.+|.++|+|++.++
T Consensus       484 Ii~l~~p~~~~~~~hpf~i~~gW~wLA~iln~~p~~~~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~  563 (591)
T KOG2412|consen  484 IIQLDIPVGNATNVHPFGINHGWAWLARILNKIPLLDTTATLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAK  563 (591)
T ss_pred             HHHhcccccCCCCCCcchhhcccHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999986    345899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhcccccCCC
Q 009839          463 EDSKLNLVIAEIQYYIEDKKFLEEPE  488 (524)
Q Consensus       463 ~~~~~~~~v~rLe~~Led~~~l~ePe  488 (524)
                      ++.|..++...|+.|+ |+++...|+
T Consensus       564 ~~~g~~rl~ill~~~l-~~q~~~~~~  588 (591)
T KOG2412|consen  564 KDTGDLRLRILLEAWL-DRQYLKEPE  588 (591)
T ss_pred             ccccchHHHHHHHHHH-Hhhhhcccc
Confidence            8777788888999999 788888887

>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT) Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF15346 ARGLU: Arginine and glutamate-rich 1 Back     alignment and domain information
>PF15236 CCDC66: Coiled-coil domain-containing protein 66 Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
3pev_B297 Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he 2e-52
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-04
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Length = 297 Back     alignment and structure
 Score =  179 bits (455), Expect = 2e-52
 Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 26/267 (9%)

Query: 218 QKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIR----QIRGLKDNVRTKASELVKI 273
                K+ ++ ++       ++ +         R I     Q+      +    +EL ++
Sbjct: 13  WHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQL 72

Query: 274 LNNPLCPQSIS---LATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLG 327
           +N+           L   +K VV + ET        A+  G + + +  Q P++ ++ + 
Sbjct: 73  INDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMA 132

Query: 328 EFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYR-EEDGKIESLENYLSRLKSYMRLYAA 386
              + C + +              E   + +G++   + K E   +Y  R+   + L+A 
Sbjct: 133 RLVKKCPFVIGFTCE------IDTEKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAI 186

Query: 387 LIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIYTAVA---LNAFLQLAGFALFK 438
           + + ++P        +   +   W  LAR  N  P N+ T      L ++   A     +
Sbjct: 187 ITRLQLPQEFITTTSHPFPIALSWHILARICN-TPLNLITNTHFVILGSWWDAAAVQFLQ 245

Query: 439 KYKSQFRKILDNIYDNFLNALKAREDS 465
            Y +Q  K+L  I +   + +  ++  
Sbjct: 246 AYGNQASKLLILIGEELTSRMAEKKYV 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
3pev_B297 Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 86.94
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 82.06
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 80.88
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Back     alignment and structure
Probab=100.00  E-value=1.6e-66  Score=526.93  Aligned_cols=264  Identities=17%  Similarity=0.276  Sum_probs=231.8

Q ss_pred             CCccchhhhhHHhhhHHHHHHHHHHHHHHHHHH-HhhhccccccccccccccccccccccccCchhhHHHHHHHHHHHhc
Q 009839          197 SDGTKKLQSAVRATESALNIEQKRLQKLKELDE-ENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILN  275 (524)
Q Consensus       197 ~~~~~k~~~~~~~~~~a~~~~~~R~~~Lkel~~-~~~~lks~lkk~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~lL~  275 (524)
                      |+.|+|+|++          |+++++.||.--. ..+..++++|+.++++||+||++|||||+|.+||++|+++|.++|+
T Consensus         5 ~~~~~~~~~~----------y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~   74 (297)
T 3pev_B            5 FDKISKMFWH----------YKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLIN   74 (297)
T ss_dssp             HHHHHHHHHH----------HHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----------HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHh
Confidence            7888988888          8777777775332 2222456899999999999999999999999999999999999998


Q ss_pred             CC---CChHHHHHHHHHHHHHhcccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhhceeeccccccccccccc
Q 009839          276 NP---LCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFE  349 (524)
Q Consensus       276 ~~---~~p~~~~Ln~lAKaIV~QaEt~---~~~sAfPlA~V~v~L~~~~Pef~diLlArl~kkCP~lVP~~~~~~~~~~~  349 (524)
                      +.   ++|+.|+||+|||+||+|||++   ++++|||+|.|++.||+.||+|+|+||||||++|||+||||++     .+
T Consensus        75 ~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~-----~~  149 (297)
T 3pev_B           75 DTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE-----ID  149 (297)
T ss_dssp             TTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC-----CS
T ss_pred             CccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC-----cc
Confidence            75   4668899999999999999995   5789999999999999999999999999999999999999964     24


Q ss_pred             cHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCcchHHHHHHHHhCCCCCccc---
Q 009839          350 SEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIY---  420 (524)
Q Consensus       350 TeEey~k~lGyr~-~dg~~Ese~~Yl~RMsGI~rLYAAI~qt~~~-----~~~nP~gi~~~W~WLARiLN~~P~~~i---  420 (524)
                      | ++|++.|||+. +||+||++++|++||+||++|||||+++++|     +.+||||++++|+|||||||++|. .+   
T Consensus       150 t-eegr~~mG~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t  227 (297)
T 3pev_B          150 T-EKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNT  227 (297)
T ss_dssp             S-HHHHHHTTCCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHH
T ss_pred             c-HHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhccc
Confidence            4 67888999976 6899999999999999999999999999865     457999999999999999999554 44   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHHhc
Q 009839          421 TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDK  481 (524)
Q Consensus       421 ta~vL~afLevAG~~L~~~YG~QF~KLL~lI~~d~~p~l~~~~~~~~~~~v~rLe~~Led~  481 (524)
                      |++||++||++||++|+++||+||.|||++|.++|+|+++++..+    .++||+.+++++
T Consensus       228 ~~~vL~~~Le~ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~----~a~RL~~l~e~~  284 (297)
T 3pev_B          228 HFVILGSWWDAAAVQFLQAYGNQASKLLILIGEELTSRMAEKKYV----GAARLRILLEAW  284 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc----cHHHHHHHHHHH
Confidence            455999999999999999999999999999999999999987643    467888888874
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 87.95
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.44  Score=42.88  Aligned_cols=177  Identities=8%  Similarity=0.044  Sum_probs=93.2

Q ss_pred             ccccccccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHHhhCcc-
Q 009839          242 FSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQ-  320 (524)
Q Consensus       242 ~~~~kRqI~~kIGQLtns~~qI~~is~eL~~lL~~~~~p~~~~Ln~lAKaIV~QaEt~~~~sAfPlA~V~v~L~~~~Pe-  320 (524)
                      ...++|+|+-.+|.||.  +.+..|+.+|..+-..  .+  -.+..++..|+..|-.+ |..+..+|.++..|...+|. 
T Consensus         8 ~~~l~r~v~~lLNKLt~--~n~~~i~~ei~~l~~~--~~--~~l~~~v~~I~~kai~e-~~f~~~YA~Lc~~l~~~~~~~   80 (243)
T d1hu3a_           8 TQELFRKVRSILNKLTP--QMFNQLMKQVSGLTVD--TE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVPM   80 (243)
T ss_dssp             HHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCCC--SH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC-
T ss_pred             HHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHcc--CH--HHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHhcCcc
Confidence            34678888888999974  4566777777655322  12  23555666666666543 44777888888888777664 


Q ss_pred             ---------HHHHHHHHhhhhceeeccccccccccccccHHHHHHHcCccc----CCCcccchhhHHHHHHHHHHHHHHH
Q 009839          321 ---------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE----EDGKIESLENYLSRLKSYMRLYAAL  387 (524)
Q Consensus       321 ---------f~diLlArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~----~dg~~Ese~~Yl~RMsGI~rLYAAI  387 (524)
                               |+..|+.+++..    +-...................++...    .+...+.....-.|+.|.+++.+-+
T Consensus        81 ~~~~~~~~~F~~~Ll~~~q~~----F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeL  156 (243)
T d1hu3a_          81 ADKPGNTVNFRKLLLNRCQKE----FEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGEL  156 (243)
T ss_dssp             --------CHHHHHHHHHHHH----HHHHTC------------------------------CCSSHHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHH----HHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                     555565554332    11110000000000000000000000    0011122345678999999999998


Q ss_pred             HhcCCCCCCCCCCcchHHHH-HHHHhCCCCCccchHHHHHHHHHHHHHHHHH
Q 009839          388 IQTEIPGVQNAHGLKEGWAW-LARFLNALPANIYTAVALNAFLQLAGFALFK  438 (524)
Q Consensus       388 ~qt~~~~~~nP~gi~~~W~W-LARiLN~~P~~~ita~vL~afLevAG~~L~~  438 (524)
                      .....      .+. ..... +..++.. | ++...-+|..+|.++|..|-.
T Consensus       157 y~~~~------v~~-~~i~~~l~~Ll~~-~-~e~~ie~l~~lL~~~G~~L~~  199 (243)
T d1hu3a_         157 FKLKM------LTE-AIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDF  199 (243)
T ss_dssp             HTTTC------SCH-HHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCC
T ss_pred             Hcccc------chH-HHHHHHHHHhcCC-C-CHHHHHHHHHHHHHHHHHHhc
Confidence            86542      111 23333 3344443 3 344677888899999998843