Citrus Sinensis ID: 009849

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
Protein Sequence
MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Secondary Structure (PSIPRED)
cEEEccccccccEEEEEEccccHHHHHHHHHccccEEEEEccccccHHHHHHccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEccccccEEEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccEEEEEEccccHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEcccccccccHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccEEEEEEEEEccccccEEccccc
Coil and Loop (DISEMBL)
mlfwavdnpapsnyllisgdrdfSNALHQLRMRRYNILlaqphkasaPLVAAAKSVWLWTSLvaggpplasgesllhtndfgtfnpedepvqvsqpmgnsntgrvsdtklkgkytkkptnqpsisrvasapvpmqesknndysyQFEHSQqkqfkkapheffggtgeprsnpnffpchtdlsggngnnfsgnfrnqhllrpnnfpmqpnfpqdnflphnsqnhgfrpippssngprfppappanlpdigklnmseypnyaqncpnfhpqsgeelkssyfespnpaslnvpqkghampggqasnrdslnsrhsrgpegppsssssttfpassnggwgtqgrltpseYVQGLIGVILLALNTlkiervvpseanitdcirygepkhrntDVRKALNCAIEQHMVIKRSlgalplyvpkneklwncenlygnpnqypkEVWDRIQKFLtsssgrsaiMASQCRYEAALILKnsclpelalGEILKILNMVitpkkwiihhqsgwqpVTITLAEyksdsgseidsgsn
Flexible Loop (DISEMBL)
mlfwavdnpapsnyLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDepvqvsqpmgnsntgrvsdtklkgkytkkptnqpsisrvasapvpmqESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPegppsssssttfPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLkiervvpseanitdcirygepkhrntDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYksdsgseidsgsn
Low Complexity Region (SEG)
MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLsggngnnfsgnfRNQHLLRpnnfpmqpnfpqdnfLPHNSQNHGFRpippssngprfppappanlpdigKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNsrhsrgpegppsssssttfpassNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Disordered region (IsUnstruct)
**FWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL******************************************************************************************************************************************************************************************************************************************************************************RLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEY*************
Disordered Region (DISOPRED)
MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPP*******************************************************************************************************************************************************************************************************************************************************************************************GVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYK************
Disordered Region (DISEMBL)
MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQ**********KAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQK******************************************WGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYK************
Disordered Region (DISPRO)
MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGG*************************************************************************************************************************N*S***RNQHLLRPNNFPMQPNFPQDNFLP****NHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCP****************************GH**********DSLNSRHSRGP*********************TQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDS*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
359479976	640	PREDICTED: uncharacterized protein LOC10	0.973	0.796	0.593	1e-170
255548285	627	hypothetical protein RCOM_1343910 [Ricin	0.948	0.792	0.551	1e-154
359487696	638	PREDICTED: uncharacterized protein LOC10	0.938	0.771	0.552	1e-147
449463551	665	PREDICTED: uncharacterized protein LOC10	0.958	0.754	0.508	1e-140
255543024	703	nucleic acid binding protein, putative [	0.958	0.714	0.529	1e-138
356572894	632	PREDICTED: uncharacterized protein LOC10	0.956	0.792	0.490	1e-124
297821118	674	hypothetical protein ARALYDRAFT_486728 [	0.929	0.722	0.479	1e-122
357511719	638	Limkain-b1 [Medicago truncatula] gi|3555	0.948	0.778	0.467	1e-121
356503990	631	PREDICTED: uncharacterized protein LOC10	0.956	0.793	0.487	1e-121
356533521	617	PREDICTED: uncharacterized protein LOC10	0.929	0.789	0.478	1e-119

>gi|359479976|ref|XP_002273252.2| PREDICTED: uncharacterized protein LOC100253767 [Vitis vinifera]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 323/544 (59%), Positives = 390/544 (71%), Gaps = 34/544 (6%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWAVDNPAP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPL+AAAKSVWLWT
Sbjct: 108 MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWT 167

Query: 61  SLVAGGPPLASGESLLHTNDFGTFNPE------DEPVQVSQPMGNSN------------T 102
           SLVAGG PL SGES    +    FNPE       E +Q SQP+ +++             
Sbjct: 168 SLVAGGFPLTSGESSQLADCNNVFNPEMSQYPVPETMQTSQPVDSNSDGLSAGTQKFFSA 227

Query: 103 GRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHE-F 161
           GRV DTK KGK+ +K  NQP+I+R +S  V +QES  N +S+Q E++Q K      HE  
Sbjct: 228 GRVGDTKSKGKFIRKIANQPNITRASSVLVGIQES--NSFSHQPEYTQGK------HESV 279

Query: 162 FGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQ--HLLRPNNFPMQPNFPQDNFLPHN 219
               G   S PN+F  + D SG NGNNF GN ++   H LRPNN P Q +F  +N  P N
Sbjct: 280 VSANG---STPNYFQGNPDSSGINGNNFIGNPQDHYPHPLRPNNIPTQASFASNNLYPPN 336

Query: 220 SQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYF 279
           S +HGFRP+PP S GPRFP APPAN+PDI +L+MSEYPNYAQN PNFH + G E K    
Sbjct: 337 SYSHGFRPMPPRSEGPRFPSAPPANVPDISRLSMSEYPNYAQNPPNFHQRIGGEYKPYSS 396

Query: 280 ESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST-TFPASSNGGWGTQ 338
           ESP+P  LNVPQKG+     Q   +D+ ++R+  GP+ P  SSS       SSNG WG+Q
Sbjct: 397 ESPHPPGLNVPQKGYLPHTSQLLYQDTSSNRYPGGPDLPAHSSSPVGANSVSSNGVWGSQ 456

Query: 339 GRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIE 398
           G   PSEYVQGLIGVILL LNTLK E+++P+E NI+DCIR+G+PKH+NTDVRKAL  A+E
Sbjct: 457 GCPQPSEYVQGLIGVILLTLNTLKTEKIMPTEVNISDCIRHGDPKHQNTDVRKALESAVE 516

Query: 399 QHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMAS 457
           Q MV+K++LGA+ LYV K E+LW C N + GNPNQYPK  WDRIQ FL +S GRSAIMAS
Sbjct: 517 QQMVVKQNLGAVQLYVGKKERLWKCVNPIGGNPNQYPKATWDRIQMFLATSIGRSAIMAS 576

Query: 458 QCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGS 517
           QC+YEAALIL+N CL E ALG++L+ILNM+ T KKWI++HQSGWQP+ ITLAE  +D  +
Sbjct: 577 QCKYEAALILRNKCLEEFALGDVLQILNMLSTMKKWIVNHQSGWQPIKITLAETNTDINT 636

Query: 518 EIDS 521
           E  +
Sbjct: 637 ETSA 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548285|ref|XP_002515199.1| hypothetical protein RCOM_1343910 [Ricinus communis] gi|223545679|gb|EEF47183.1| hypothetical protein RCOM_1343910 [Ricinus communis]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/531 (55%), Positives = 358/531 (67%), Gaps = 34/531 (6%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWAVDNPAP+NYLLISGDRDFSN LHQLRMRRYNILLAQP KASAPL+AAAK+VWLWT
Sbjct: 110 MLFWAVDNPAPANYLLISGDRDFSNCLHQLRMRRYNILLAQPQKASAPLIAAAKTVWLWT 169

Query: 61  SLVAGGPPLASGESLLHTNDFGTFNPED------EPVQVSQPMGNSNTG--------RVS 106
           SL AGG PL++GES    N   TFN         E +Q S+   N++ G         V 
Sbjct: 170 SLSAGGAPLSNGESTQLANVSSTFNAVTSQSRYTETIQFSKATENASLGYSNPFTNVNVG 229

Query: 107 DTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGG-- 164
           +T+ KGKY +    QP ISR +SAPV +QE+ +N+Y YQ + +Q KQFKKAPHEFFGG  
Sbjct: 230 ETRFKGKYVQNTAKQPGISRASSAPVAVQETSSNEYPYQLDRAQAKQFKKAPHEFFGGNR 289

Query: 165 --TGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNS 220
                  S PNFFP ++D +G NG+N  G+ + Q+   +RPN F MQ     D FL  +S
Sbjct: 290 PVVSASISTPNFFPGNSDPAGSNGSNLIGSAQYQYAQPVRPNKFSMQQPVSPDGFLSMHS 349

Query: 221 QNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFE 280
           +        P +   +F      N+PDIGKL MSE   Y ++ PN H Q+ E+LK    E
Sbjct: 350 R--------PEAFATKFSSTSFKNVPDIGKLGMSESCTYIEDAPNLHQQTVEQLKMGSVE 401

Query: 281 SPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGR 340
           S N A LN P K   M   Q  NR          P  P  S+++     SSN  WGTQGR
Sbjct: 402 SSNSAFLNPPHKSLMMYSSQEDNRYPCAPEFPPPPFSPEVSNTT-----SSNVIWGTQGR 456

Query: 341 LTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQH 400
             PSE+VQG IGVILLAL TLK E+++P+EANITDCIR+G+ KHR+ DVRKAL+ AIE +
Sbjct: 457 PPPSEHVQGHIGVILLALYTLKAEKIMPTEANITDCIRFGDKKHRSIDVRKALDSAIEHN 516

Query: 401 MVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQC 459
           MV+K+SLG +PLYV KNEKLW C N L GNPNQYPK +WD IQ+FLTSS+GRSAI+AS C
Sbjct: 517 MVMKQSLGEMPLYVGKNEKLWKCVNPLGGNPNQYPKAIWDGIQRFLTSSTGRSAILASHC 576

Query: 460 RYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAE 510
           RYEAALILK  CL + ALG+++ ILN+ I  KKWI+HH+SGWQP+ I+L E
Sbjct: 577 RYEAALILKQGCLEDHALGDVIHILNLTIYTKKWIVHHRSGWQPIAISLKE 627

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487696|ref|XP_002276596.2| PREDICTED: uncharacterized protein LOC100242533 [Vitis vinifera]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 297/538 (55%), Positives = 356/538 (66%), Gaps = 46/538 (8%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWAVDNPAP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPL+AAAKSVWLWT
Sbjct: 122 MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWT 181

Query: 61  SLVAGGPPLASGESL-LHTNDFGTFN----PEDEPVQVSQP---------MGNS---NTG 103
           SL+AGG PL +GES  L  N + + +    P  +P+Q +Q          +GN    N G
Sbjct: 182 SLLAGGLPLTNGESQQLGNNSYSSSDTLPIPVSDPIQTNQSVDSFSENSYLGNQKLPNMG 241

Query: 104 RVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFG 163
           R +D K KGK  ++  NQP+I R ASAP                  QQ      P+    
Sbjct: 242 RTADIKYKGKQNRRNLNQPNIPRTASAP------------------QQLSGAYNPNASLN 283

Query: 164 GTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQ 221
           G       PNFF    D S  NG+N   N++N +   LRPN FP QP F   N  P N  
Sbjct: 284 GHA-----PNFFSGSPDPSRSNGHNLQSNYQNHYSQPLRPN-FPSQPTFGPSNSFPPNPH 337

Query: 222 NHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFES 281
                 +PP  +GP F   PP N+PD+G LN+SEYP+   N P+F  + GE  ++S  ES
Sbjct: 338 TPASHIMPPRPDGPGFTNGPP-NVPDVGVLNISEYPSNVHNPPSFQQRDGELKRNSNIES 396

Query: 282 PNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST-TFPASSNGGWGTQGR 340
           PNP SL+  QKGH +    +   D  N+R+SRGPE PPSSSS+  T    SNG WG+ G 
Sbjct: 397 PNPGSLSGQQKGHILHDTPSFYHDPQNNRYSRGPEFPPSSSSAMGTTNVPSNGIWGSHGC 456

Query: 341 LTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQH 400
             PSEYVQGLIGVILLALNTLK E+++P+EANI DCIRYG+PKH+NTDV+KAL  AIEQ 
Sbjct: 457 QKPSEYVQGLIGVILLALNTLKNEKILPTEANIADCIRYGDPKHQNTDVKKALESAIEQQ 516

Query: 401 MVIKRSLGALPLYVPKNEKLWNCENLY-GNPNQYPKEVWDRIQKFLTSSSGRSAIMASQC 459
           MVIK+ LG + LYV KN++LW C NL  GNP QY K  WD IQ FL S +GRSAIMASQC
Sbjct: 517 MVIKQKLGTVQLYVGKNDRLWKCVNLMGGNPKQYSKATWDGIQNFLISPAGRSAIMASQC 576

Query: 460 RYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGS 517
           +YEAA+ILKN CL + ALG++L+ILNMVI+ KKWI H QSGWQPV I+L E  +DSG+
Sbjct: 577 KYEAAIILKNMCLKDRALGDVLQILNMVISAKKWITHLQSGWQPVNISLPESNTDSGA 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463551|ref|XP_004149497.1| PREDICTED: uncharacterized protein LOC101219837 [Cucumis sativus] gi|449522226|ref|XP_004168128.1| PREDICTED: uncharacterized protein LOC101228378 [Cucumis sativus]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/576 (50%), Positives = 359/576 (62%), Gaps = 74/576 (12%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWAVDNPAP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPLVAAAKSVWLW 
Sbjct: 106 MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWM 165

Query: 61  SLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMG---NSNTG-------------- 103
           SLVAGG P++S ES    N      P  EP Q+SQ  G   N +TG              
Sbjct: 166 SLVAGGLPISSTESSQLVNGI----PTSEP-QISQTSGFDHNQHTGQAIVYKPENVNLGN 220

Query: 104 -------RVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKK 156
                  R+ D K KGKY +K +NQP ISR  S+P  MQE KN ++  Q  H Q KQFKK
Sbjct: 221 QRSYSTERMGDNKHKGKYVQKNSNQPVISRALSSPASMQE-KNPNFLNQPNHMQAKQFKK 279

Query: 157 APHEFFGGTGEP-----RSNPNFF---PCHTDLSGGNGNNFSGNFRNQHL---------- 198
           APHEFF G G P     +S PN F     H  + G      S  ++  HL          
Sbjct: 280 APHEFF-GNGNPVGSSSQSIPNLFIENSSHARIDGNGSMGSSSCYQPSHLAHARSDGNIS 338

Query: 199 -----------LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPD 247
                      +R NN  + P F  DN  P NS NH   P+      P  P       P+
Sbjct: 339 MSNSSSYQPPHMRQNNMQLHPPFRPDNVFPPNSLNHNPFPV---LGQPDLPA------PN 389

Query: 248 IGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSL 307
           I +L++S+YPNY  N  NFH Q+GE    S  +S NPA+ N P K  +  GGQ+ + D+L
Sbjct: 390 ISQLHISDYPNYPINPQNFHQQTGEFRPHS--KSQNPANFNAPDKSRSHHGGQSFHHDAL 447

Query: 308 NSRHSRGP--EGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIER 365
           N RH+R      P SS ++ T   S N GWG+QG+  PSEY+QGLIGVILLALNTLK+E+
Sbjct: 448 NKRHARDAVEYTPHSSFTTVTRSLSHNDGWGSQGQPPPSEYIQGLIGVILLALNTLKVEK 507

Query: 366 VVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN 425
           ++P E NI +CIRYG+ ++ NTDV+ AL+ AIE +MV+K+ +G L LYV K EKLW C N
Sbjct: 508 IMPKEENIAECIRYGDLRNCNTDVKMALDSAIEHNMVVKQEIGELQLYVGKTEKLWKCVN 567

Query: 426 -LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKIL 484
            L G PNQYPK +WD+I  FL S +GRSA+MAS+CRYEAALILK  CL + ALG++L+IL
Sbjct: 568 PLGGYPNQYPKAIWDKIHYFLASPAGRSAMMASRCRYEAALILKKECLTDFALGDVLQIL 627

Query: 485 NMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEID 520
           +M+ + KKWI HH SGWQP+ I LAE  +D+ S  +
Sbjct: 628 HMITSMKKWITHHNSGWQPINIILAEGNTDASSRTE 663

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543024|ref|XP_002512575.1| nucleic acid binding protein, putative [Ricinus communis] gi|223548536|gb|EEF50027.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/536 (52%), Positives = 350/536 (65%), Gaps = 34/536 (6%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWAVDNPAP+NYLLISGDRDFSNALHQLRMRRYNILLAQP +ASAPL+AAA+SVWLWT
Sbjct: 179 MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQRASAPLLAAARSVWLWT 238

Query: 61  SLVAGGPPLASGESL-----LHTNDFGTFN-PEDEPVQVSQP---------MGNSNTGRV 105
           SLVAGGPP+   ESL      +T+   T + P  + V + QP         MGN  T  +
Sbjct: 239 SLVAGGPPVREVESLPLGNISYTSTSDTLHIPVTDTVHLKQPSDSYSENPHMGNQRTTYI 298

Query: 106 SDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGT 165
             TK KGK  ++  NQ + S+ ++APV  QE + N  SYQ            P  +    
Sbjct: 299 --TKQKGKTNRRNLNQTNGSKTSNAPVWAQEDQPNSNSYQ------------PGPYVPKV 344

Query: 166 GEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNH 223
                +PNF P   + +  +  N   N ++     LRPN   MQP+F   N  P N Q H
Sbjct: 345 TVSGPSPNFNPGSPNFTWSDVTNVRDNHQSHFTQPLRPNASAMQPDFAAGNMYPPNFQIH 404

Query: 224 GFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPN 283
               +PP  NG  F   PP N+PDIG L++S YP    N PN   ++GE+   +  ++P 
Sbjct: 405 APL-MPPRPNGTTFTSEPPTNVPDIGNLHISGYPTSFHNPPNAQRRNGEQKHDAKRKAPK 463

Query: 284 PASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST-TFPASSNGGWGTQGRLT 342
             +LN  Q G+      +   +++N+R+  G E PPSSSS+T T  A  N  WG  G   
Sbjct: 464 SVNLNNSQNGYTTQNNPSGYHETVNNRYPGGSEYPPSSSSATATEVAPVNVIWGMPGCPK 523

Query: 343 PSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMV 402
           PSEYVQGLIGVILLALNTLK E+++P+EANI DCIRYG+PKHRNTD++KAL  AIEQ MV
Sbjct: 524 PSEYVQGLIGVILLALNTLKSEKIMPTEANIADCIRYGDPKHRNTDIKKALESAIEQQMV 583

Query: 403 IKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRY 461
           +K++LGA+ LYV KNEKLW C N + G+  +YPK  WD IQKFL SS+GRSAIM+SQCRY
Sbjct: 584 MKQNLGAVQLYVGKNEKLWRCVNPIGGSLKEYPKATWDEIQKFLASSAGRSAIMSSQCRY 643

Query: 462 EAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGS 517
           EAA I+K+ CL ELALG IL+ILNMVI  KKWIIHHQSGWQP+TITLAE   + GS
Sbjct: 644 EAATIIKSMCLKELALGNILQILNMVIALKKWIIHHQSGWQPLTITLAEANCNLGS 699

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572894|ref|XP_003554600.1| PREDICTED: uncharacterized protein LOC100794608 [Glycine max]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/542 (49%), Positives = 339/542 (62%), Gaps = 41/542 (7%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWAVDNPAP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPLVAAAKSVWLWT
Sbjct: 101 MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWT 160

Query: 61  SLVAGGPPLASGESLLHTNDFGTFN--------PEDEPVQVSQPM--------GNS---N 101
           SL+AGGPPL++GES    N   +          P     Q+ Q +        GNS   N
Sbjct: 161 SLLAGGPPLSNGESQQLGNGSLSHVSSSDSLQIPVTSAAQIPQQVDSYSEVHVGNSKFPN 220

Query: 102 TGRVSDTKLKGKYTKKPTNQPSISRVASAP-VPMQESKNNDYSYQFEHSQQKQFKKAPHE 160
            GR  D++ +GK   +  +Q +  R  + P V +Q+++N + +              P  
Sbjct: 221 GGRGFDSRYQGKTNWRNPSQSNGPRAMNPPPVGLQDNRNRNNTNSHR----------PGN 270

Query: 161 FFGGTGEPRSNP--NFFPCHTDLSGGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFL 216
           F      P S P  N+   +TD    N +N  GN +  +   LRPNNFP+QP F   N  
Sbjct: 271 F--NPNVPLSGPATNYVHGNTDQLWSNNSNLQGNHQIPYSQPLRPNNFPLQPPFAPSNSY 328

Query: 217 PHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKS 276
             NS       +PP + GP F   P  N+PDIG LN+S YPN   N P    +SGE  ++
Sbjct: 329 TPNSHTFPTSMVPPRTGGPNFTSGPHTNVPDIGNLNISGYPNSVHNPPTVPQRSGELKQN 388

Query: 277 SYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPE-GPPSSSSSTTFPASSNGGW 335
           S   +P+       + GH +     S     +  +  GPE  PP  ++      S NG W
Sbjct: 389 SNNNAPHHLRSIDEKNGHMV---HNSGTKQSHQGYQHGPEYQPPPLAAMGNNNPSGNGMW 445

Query: 336 GTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNC 395
           G+ G   PSEYVQGLIGV+LLALN+LK  +++P+EANITDCIRYG+PKHRNTDV+KAL  
Sbjct: 446 GSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRYGDPKHRNTDVKKALES 505

Query: 396 AIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAI 454
           AIEQ+MV+K++LGALPLYV KN+KLW C N L G P Q+ KE WD I+KFLT+ +GRSA+
Sbjct: 506 AIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGTPKQHSKETWDEIEKFLTTPAGRSAL 565

Query: 455 MASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSD 514
           M +QC+YEA +++K+ C  +LALG++L+ILNM+IT KKW+ HH SGWQP+ ITL E    
Sbjct: 566 MGTQCKYEAGIVIKSMCFKDLALGDVLQILNMLITHKKWVTHHPSGWQPLNITLPETNPG 625

Query: 515 SG 516
           SG
Sbjct: 626 SG 627

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821118|ref|XP_002878442.1| hypothetical protein ARALYDRAFT_486728 [Arabidopsis lyrata subsp. lyrata] gi|297324280|gb|EFH54701.1| hypothetical protein ARALYDRAFT_486728 [Arabidopsis lyrata subsp. lyrata]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 270/563 (47%), Positives = 336/563 (59%), Gaps = 76/563 (13%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWA+DNPAP+N++LISGDRDFSNALH LRMRRYN+LLAQP KAS PLV AAK+VWLWT
Sbjct: 112 MLFWALDNPAPANFMLISGDRDFSNALHGLRMRRYNVLLAQPLKASVPLVHAAKTVWLWT 171

Query: 61  SLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPM-GNSNTGRVSDTKLKGKYTKKPT 119
           SL AGG PL   ESL    +  T     E +  SQP+  N ++ RV D K K KY  K +
Sbjct: 172 SLSAGGIPLTRAESLQLVANQTTPTSGSE-IPSSQPLDSNFDSRRVFDNKPKVKYLSKQS 230

Query: 120 N-QPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGT-----------GE 167
           N QP                NN+Y  Q +++Q KQFKKAPHEFFG +             
Sbjct: 231 NHQP----------------NNNYRQQ-QNTQGKQFKKAPHEFFGSSQPSVSTSRPPPNL 273

Query: 168 PRSNPNFFPCHT----------------------------DLSGGNGNNFSGNFRNQH-- 197
           P SN N FP +                             D S  NGN+   + +N +  
Sbjct: 274 PSSNVNTFPGNVMTNPQNQNQYNYPPRPGPFPPRQPYPNPDPSWNNGNSIPNHAQNYYPN 333

Query: 198 LLRPNNFPMQPNFPQDNFLPHNSQN------HGFRPIP-PSSNGPRFPPAPPANLPDIGK 250
             RP    M+P +  + F P+  +N      +GFRP+  P ++GPRFP  P    PDI  
Sbjct: 334 AGRPGASNMRPPY-GNVFRPYRPENLNPPIGNGFRPMQHPRNDGPRFPSPPLLTAPDISN 392

Query: 251 LNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQA---SNRDSL 307
           L++S+YP+  QN PNF+PQ  +E +     S    S N P KG+      A    +  + 
Sbjct: 393 LSVSQYPSQTQNRPNFNPQVRQEFRPKMESS---YSHNGPNKGYIPRTSSAPVTHSTTTT 449

Query: 308 NSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVV 367
              +S  P  PPS     T   SSNG WGTQ    PSEYVQGLIGVIL ALN LK E+V+
Sbjct: 450 GYTNSSSPGVPPSQPPVVTGSGSSNGMWGTQECPPPSEYVQGLIGVILHALNILKTEKVM 509

Query: 368 PSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-L 426
           P+E NI+DCI+YG+PKHR TD++KAL  A+E HM++  ++G L LY+ KNE LWNC N L
Sbjct: 510 PTEPNISDCIQYGDPKHRGTDIKKALESALEHHMIVVTNVGKLKLYIGKNEALWNCVNPL 569

Query: 427 YGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNM 486
             N  QYPK  WDRIQ+FLTSSSGR A  A+QCRYEAA +LK  CL EL LG+IL+ILN+
Sbjct: 570 GANAKQYPKATWDRIQEFLTSSSGRVAFTATQCRYEAAQVLKKECLKELTLGDILQILNI 629

Query: 487 VITPKKWIIHHQSGWQPVTITLA 509
             T KKWI HHQ+GW+P+TI+LA
Sbjct: 630 TATTKKWITHHQTGWKPITISLA 652

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511719|ref|XP_003626148.1| Limkain-b1 [Medicago truncatula] gi|355501163|gb|AES82366.1| Limkain-b1 [Medicago truncatula]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/562 (46%), Positives = 336/562 (59%), Gaps = 65/562 (11%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWAVDNPAP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPLVAAAKSVWLWT
Sbjct: 101 MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWT 160

Query: 61  SLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQP----------------MGNSNT-- 102
           +L+AGGPPL SG++   +N   +F P  E +QV                    GNSN   
Sbjct: 161 TLLAGGPPLTSGDTQQLSNS--SFLPSSETLQVPVSNAAQTQQQGGPYSEIHAGNSNVQN 218

Query: 103 -GRVSDTKLKGKYTKKPTNQPSISRVAS-APVPMQESKNNDYSYQFEHSQQKQFKKAPHE 160
            GR  D++ +G+ T +  +QP+  +  +  PV +Q+++NN  +Y+            P  
Sbjct: 219 GGRGFDSRYQGRPTWRNPSQPNGPKAMNPPPVGLQDNRNNVNNYR------------PGN 266

Query: 161 FFGGTGEPRSNPNFFPCHTD----------------LSGGNGNNFSGNFRNQHLLRPNNF 204
           +     +  S  NF   ++D                         +        LRPN F
Sbjct: 267 YNPNVSQSGSTANFERANSDPLWSNNGNQQGNHQNQQGNHQNQQGNHQNPYSQPLRPNGF 326

Query: 205 PMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCP 264
           P+QP F   N    NS      P+PP + G  F    P  +PDIG LN+S YPN   N P
Sbjct: 327 PLQPPFAPSNSYSPNSHTFATTPVPPRTVGNNFSTGSPRTVPDIGNLNISGYPNNGHN-P 385

Query: 265 NFHPQSGEELK-SSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSS 323
              PQ   +LK +    +P P      Q GH +         S    +  GPE  P+ S+
Sbjct: 386 RTVPQRSGDLKPNPKSSAPLPVRSTNEQNGHMV-------HSSTTQGYPHGPEYQPTHST 438

Query: 324 ST---TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYG 380
           +      P  SNG WG+ G   PSEYVQGLIGV+LLALN+LK  +++P+E NITD IRYG
Sbjct: 439 AMGNNKLP--SNGKWGSSGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEKNITDSIRYG 496

Query: 381 EPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWD 439
           +PKHRNTDV+KAL  A+EQ MV+K++LGAL LYV KN+KLW C N L GNP Q+ KE+WD
Sbjct: 497 DPKHRNTDVKKALESAMEQQMVVKQNLGALTLYVGKNDKLWKCVNPLGGNPKQHSKEIWD 556

Query: 440 RIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQS 499
            IQ FLT+ +GRSAIM +QC+YEA +++K+ C  +LALG++L+ILNMVIT KKWI+H QS
Sbjct: 557 EIQNFLTTPAGRSAIMDTQCKYEAGIVIKSMCFKDLALGDVLQILNMVITHKKWIVHQQS 616

Query: 500 GWQPVTITLAEYKSDSGSEIDS 521
           GWQP+ +TL E   DSG   D+
Sbjct: 617 GWQPLILTLPESNPDSGVTSDA 638

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503990|ref|XP_003520782.1| PREDICTED: uncharacterized protein LOC100808926 [Glycine max]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/540 (48%), Positives = 333/540 (61%), Gaps = 39/540 (7%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWA+DNPAP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPLVAAAKSVWLWT
Sbjct: 101 MLFWALDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWT 160

Query: 61  SLVAGGPPLASGESLLHTNDFGTFN--------PEDEPVQVSQPM--------GNS---N 101
           SL+AGGPPL++GES    N   +          P     Q+ Q +        GNS   N
Sbjct: 161 SLLAGGPPLSNGESQQLGNGSLSHVSSSDSLQIPVTSATQIQQQVDSYSEVHVGNSKFTN 220

Query: 102 TGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEF 161
            GR  D++ +GK   +  +Q +  R A  P+P+          Q   ++       P  F
Sbjct: 221 GGRGFDSRYQGKTNWRNLSQSNGPR-AMNPLPV--------VLQDNRNRNNANSSQPGNF 271

Query: 162 FGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHN 219
                 P S  N    +TD    N +N  GN +  +   LRPNNFP+QP F   N    N
Sbjct: 272 --NLNVPSSATNHGHGNTDQLWSNNSNLQGNHQIPYSQPLRPNNFPLQPPFAPSNSYTPN 329

Query: 220 SQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYF 279
           S       +PP + GP F   P  N+PDIG L++S YPN   N P    +SGE  ++   
Sbjct: 330 SHTFPTSVVPPRTGGPNFTSGPHTNVPDIGSLSISGYPNSVHNPPIVPQRSGELKQNPNS 389

Query: 280 ESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPS--SSSSTTFPASSNGGWGT 337
            +P        + GH +   Q S    L+  +  GPE  P   ++     P S NG WG+
Sbjct: 390 NAPLLLRSIDDKNGHMV---QNSGTQQLHQGYQHGPEYQPMPLAAMGNNNP-SGNGMWGS 445

Query: 338 QGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAI 397
            G   PSEYVQGLIGV+LLALN+LK  +++P+EANITDCIRYG+PKHRNTDV+KAL  AI
Sbjct: 446 PGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRYGDPKHRNTDVKKALESAI 505

Query: 398 EQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMA 456
           EQ+MV+K++LGALPLYV KN+KLW C N L G P Q+ KE WD+I KFLT+ +GRSA+M 
Sbjct: 506 EQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGTPKQHSKETWDQIGKFLTTPAGRSALMG 565

Query: 457 SQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSG 516
           +QC+YEA +++K+ C  +L LG++L+ILNM+IT KKW+ HH SGWQP+ ITL E    SG
Sbjct: 566 TQCKYEAGIVIKSMCFKDLVLGDVLQILNMLITHKKWVTHHPSGWQPLNITLPEINPTSG 625

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533521|ref|XP_003535312.1| PREDICTED: uncharacterized protein LOC100794384 [Glycine max]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/537 (47%), Positives = 333/537 (62%), Gaps = 50/537 (9%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
           MLFWAVDNPAP+NYLLISGDRDFSNALHQLR+R+YNILLAQP KASAPLVAAAKSVWLWT
Sbjct: 103 MLFWAVDNPAPANYLLISGDRDFSNALHQLRLRKYNILLAQPQKASAPLVAAAKSVWLWT 162

Query: 61  SLVAGGPPLASGES-LLHTNDFGTFN-----PEDEPVQVSQPMGN-----------SNTG 103
           SL+AGGPPL +GES  L  N+  + +     P    VQ+ Q MG+            NTG
Sbjct: 163 SLLAGGPPLMNGESQQLGNNNIQSSSDTLPIPVSNAVQIPQHMGSFSEVHAGNQKFPNTG 222

Query: 104 RVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFG 163
           R  D++  GK   +    PS +    A  P  E+ +N  S Q  +            +  
Sbjct: 223 RQLDSRHHGKTNGR---NPSKTNGPKALNPAPENYSNINSSQTGN------------YTH 267

Query: 164 GTGEPRSNPNFFPCHTD-LSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQN 222
                 S PNF   + D + G NGN  S        LR N+FP+QP F  +N    N Q 
Sbjct: 268 NVPPSGSTPNFICGNPDQMRGKNGNLHS------QPLRSNSFPLQPPFIPNNSFSPNPQT 321

Query: 223 HGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESP 282
                +PP + GP F  AP  N+P+I    +S YP+ A +       +G+  +SS   +P
Sbjct: 322 FATSVVPPRTGGPSFSAAPLLNVPNISNRKISGYPSNAHDPRPVKQWNGDLKQSSNNNAP 381

Query: 283 NPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST---TFPASSNGGWGTQG 339
           +P      Q GH +      N   L + H  GPE  P+S ++      P   NG WG+ G
Sbjct: 382 SPVKSIGEQTGHMV-----QNTQQLYNGHPHGPEYQPTSLTTMGNNNLPG--NGIWGSPG 434

Query: 340 RLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQ 399
              PSEYVQGLIGV+LLALNTLKIE+++P+EANITDCIR G+PKHRNTDV+KAL  AIEQ
Sbjct: 435 CPKPSEYVQGLIGVVLLALNTLKIEKIMPTEANITDCIRCGDPKHRNTDVKKALENAIEQ 494

Query: 400 HMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQ 458
            MV+K+++GAL L++ KN+K+W C + + GNP ++ KE W+ I+KFL++ SGR  IM +Q
Sbjct: 495 QMVVKQNVGALQLFIGKNDKVWKCVSPVGGNPKKHSKETWNEIKKFLSTPSGRLVIMGTQ 554

Query: 459 CRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDS 515
           C+YEA ++++N CL   ALG++L+ILNM+IT KKWI+H QSGWQP+ ITL E  SDS
Sbjct: 555 CKYEAGIVIRNMCLKNHALGDVLQILNMLITIKKWIVHQQSGWQPLNITLTEVNSDS 611

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
TAIR|locus:2098058	673	AT3G62200 "AT3G62200" [Arabido	0.511	0.398	0.489	4.4e-109
TAIR|locus:2098073	279	EDA32 "embryo sac development	0.139	0.261	0.767	8.1e-26
TAIR|locus:2159491	346	AT5G61180 "AT5G61180" [Arabido	0.129	0.196	0.647	5.5e-19
TAIR|locus:2100957	257	AT3G60940 "AT3G60940" [Arabido	0.139	0.284	0.546	4.2e-15
TAIR|locus:2176075	841	AT5G64710 "AT5G64710" [Arabido	0.133	0.083	0.450	1e-12
TAIR|locus:2178163	924	AT5G09840 [Arabidopsis thalian	0.248	0.140	0.299	1.8e-11
TAIR|locus:2053567	489	AT2G15560 [Arabidopsis thalian	0.124	0.132	0.402	0.00045

TAIR|locus:2098058 AT3G62200 "AT3G62200" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 4.4e-109, Sum P(2) = 4.4e-109
 Identities = 136/278 (48%), Positives = 178/278 (64%)

Query:   251 LNMSEYPNYAQNCPNFHPQSGEE----LKSSYFESPNPASLNVPQKGHAMPGGQASNRDS 306
             L++S+YP+  QN PNF+PQ  +E    ++SSY  +  P    +P+   A P  Q++   +
Sbjct:   395 LSVSQYPSQTQNRPNFNPQVRQEFRPKMESSYTHN-GPNKSYIPRCSSA-PVTQSTTTTA 452

Query:   307 LNXXXXXXXXXXXXXXXXXXXXXXXNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERV 366
                                      N  WGTQ    PSEYVQGLIGVIL AL+ LK E+V
Sbjct:   453 --HTYPSSPGVPPSQPPMVTGSGSSNDRWGTQECPPPSEYVQGLIGVILHALHILKTEKV 510

Query:   367 VPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENL 426
             +P+E NI+DCI+YG+PKH  TDV+KAL  A+E HM++  ++G L LY+ KNE LWNC N 
Sbjct:   511 MPTEPNISDCIQYGDPKHHGTDVKKALESALEHHMIMMTNVGKLKLYIGKNEALWNCVNP 570

Query:   427 YG-NPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILN 485
              G N  QYPKE WDRIQ+FLTSSSGR    A+ CRYEAA +LK  CL E  LG+IL+ILN
Sbjct:   571 LGANAKQYPKETWDRIQQFLTSSSGRVEFTATTCRYEAAQVLKKECLKEFTLGDILQILN 630

Query:   486 MVITPKKWIIHHQSGWQPVTITLA-EYKSDSGSEIDSG 522
             +  T KKWI HHQ+GW+P+TI+LA E  +++ +E D G
Sbjct:   631 ITATTKKWITHHQTGWKPITISLAAETTNETATEADPG 668

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098073 EDA32 "embryo sac development arrest 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 8.1e-26, P = 8.1e-26
 Identities = 56/73 (76%), Positives = 62/73 (84%)

Query:     1 MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
             MLFWA DNPAPSN +LISGDRDFSNALH+L +RRYNILLA P KASAPL  AA +VWLWT
Sbjct:   106 MLFWAFDNPAPSNIMLISGDRDFSNALHKLSLRRYNILLAHPPKASAPLSQAATTVWLWT 165

Query:    61 SLVAGGPPLASGE 73
             SL+AGG PL  G+
Sbjct:   166 SLLAGGNPLIRGK 178

GO:0005634 "nucleus" evidence=ISM

GO:0010197 "polar nucleus fusion" evidence=IMP

TAIR|locus:2159491 AT5G61180 "AT5G61180" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 5.5e-19, P = 5.5e-19
 Identities = 44/68 (64%), Positives = 56/68 (82%)

Query:     1 MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
             ++ WA+DN AP+N +LISGD+DFS  LH+L M+RYNILLA+P KAS PL+AAAK+VWLWT
Sbjct:   182 IMLWAMDNQAPANIMLISGDKDFSYLLHKLGMKRYNILLARPEKASTPLIAAAKTVWLWT 241

Query:    61 SLVAGGPP 68
             S+  G  P
Sbjct:   242 SIFNGDCP 249

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2100957 AT3G60940 "AT3G60940" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query:     1 MLFW-AVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKA-SAPLVAAAKSVWL 58
             +L W A+++P PSN ++I+GDRD+S ALHQLR R +NILLA P  + S  L+ AA SVW 
Sbjct:   172 VLTWIALNHPQPSNLMVITGDRDYSVALHQLRCRSFNILLACPESSTSTALLRAATSVWK 231

Query:    59 WTSLVAGGPPLASGE 73
             W SL+ G  PLA  E
Sbjct:   232 WNSLILGQKPLAENE 246

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2176075 AT5G64710 "AT5G64710" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 32/71 (45%), Positives = 45/71 (63%)

Query:     1 MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSV-WLW 59
             ++ W   NP P++  LIS D DF+N LH+LRMR YNILLA   + +  ++ +A S+ W W
Sbjct:   144 IMCWVSQNPPPAHLFLISSDSDFANVLHRLRMRNYNILLACYEETTLGVLCSAASIMWDW 203

Query:    60 TSLVAGGPPLA 70
              +LV G  P A
Sbjct:   204 DALVRGQNPTA 214

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2178163 AT5G09840 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
 Identities = 41/137 (29%), Positives = 68/137 (49%)

Query:     1 MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWT 60
             ++ W   NP P++ LLIS D++F++ LH+LRM  YNILLA    A   L +AA  +W W 
Sbjct:   155 LMCWVSQNPPPAHLLLISSDKEFASVLHRLRMNNYNILLASKSSAPGVLCSAASIMWDWD 214

Query:    61 SLVAGGPPLASGESLLHTNDFGTFNP--EDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKP 118
             +L+ G     +G+      D G +N       + +  P   + T   S + +K +   + 
Sbjct:   215 ALIKG--ECVTGKHFNQPPD-GPYNSWYGHYRIPLLDPFAIATTTEQSSSSVKIEELSES 271

Query:   119 TNQPSISRVASAPVPMQ 135
              N  ++  V   P+P +
Sbjct:   272 VNSNAV--VNLRPIPKE 286

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2053567 AT2G15560 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:     1 MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKA--SAPLVAAAKSVWL 58
             M  + +DN  P+  +L+SGD DF+ ALH L  R Y ++L  P     ++ L  A K VW 
Sbjct:   134 MFLFVLDNKPPATIVLVSGDVDFAPALHILGQRGYTVILVIPSSVYVNSALSNAGKFVWD 193

Query:    59 WTSLVAG 65
             W S+V G
Sbjct:   194 WHSIVHG 200

GO:0005634 "nucleus" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022522001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (622 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	524
cd10910	145	cd10910, limkain_b1_N_like, N-terminal LabA-like d	2e-21
pfam01936	141	pfam01936, NYN, NYN domain	2e-10
pfam14418	69	pfam14418, OHA, OST-HTH Associated domain	6e-05

>gnl|CDD|199896 cd10910, limkain_b1_N_like, N-terminal LabA-like domain of limkain b1 and similar proteins

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPH-KASAPLVAAAKSVWLW 59
           +L WA+DNP P+N +LISGD+DF++ L  LR R YN+LLAQP  +AS+ L  AA  VWLW
Sbjct: 84  ILLWALDNPPPANIMLISGDKDFADTLSDLRERGYNVLLAQPPDQASSALSEAASEVWLW 143

Query: 60  TS 61
            S
Sbjct: 144 ES 145

This eukaryotic subfamily of LabA-like domains contains the N-terminal domain of human limkain b1, a human autoantigen, localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif, its - and similar - domain architectures are shared by several members of this family, and a function of these architectures in RNA binding or RNA metabolism has been suggested. The function of the N-terminal domain is unknown. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 145

>gnl|CDD|216797 pfam01936, NYN, NYN domain

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 1   MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRY--NILLAQPHKASAPLVAAAKSVW 57
            L  A DN  P  ++L+SGD DF+  L +LR R    N+L A+P  + A L+ AA    
Sbjct: 82  ALELAYDNN-PDTFVLVSGDGDFAPLLERLRERGKRVNVLGAEPSTSDA-LINAADRFI 138

These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs. Length = 141

>gnl|CDD|206585 pfam14418, OHA, OST-HTH Associated domain

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 459 CRYEAALILKN---SCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTIT 507
            RY  A  LK      L  L+LG +  I+ + I+ KK  I+  +   PV  +
Sbjct: 6   GRYGFAETLKKEGPPFLRGLSLGSLCHIVQLAISKKKL-IYENNNLLPVEAS 56

OHA occurs with OST-HTH. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	524
PF14418	75	OHA: OST-HTH Associated domain	99.37
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	98.29
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	98.03
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	95.36
COG1432	181	Uncharacterized conserved protein [Function unknow	93.2

>PF14418 OHA: OST-HTH Associated domain

Probab=99.37  E-value=1e-13  Score=114.35  Aligned_cols=60  Identities=35%  Similarity=0.434  Sum_probs=55.7

Q ss_pred             cccHHHHHHHHHHh---cccchhhhHHHHHHHHhhccccceeeCCCCceeeEEEEeeeecCCCc
Q 009849          457 SQCRYEAALILKNS---CLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGS  517 (524)
Q Consensus       457 SqsRyeaA~~LKk~---CLk~LalgDVLQILnmlIs~KKWi~~hpSgwqPl~itl~~~~~~~~~  517 (524)
                      +++||++|+.||+.   |||+|+||+|++||+|.|++|||+ ++++.|+|+.+++.++++..+.
T Consensus         9 ~~gRY~~A~~Lk~~gp~~lr~l~Lg~i~~iVqlai~~k~l~-y~~~~l~P~~~~~~~a~s~~~~   71 (75)
T PF14418_consen    9 SGGRYGMAQFLKKRGPPFLRSLSLGDICHIVQLAISKKKLI-YENSNLKPFCISQKVANSFLGI   71 (75)
T ss_pred             CCcHHHHHHHHHhcCchhhcCCcHHHHHHHHHHHHhCCeee-eCCCccccHHHHHHHHHhhhcc
Confidence            38999999999998   999999999999999999999999 9999999999999888876544

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=98.29  E-value=5.9e-07  Score=76.30  Aligned_cols=56  Identities=32%  Similarity=0.488  Sum_probs=41.0

Q ss_pred             CceecccCCCCceEEEEeCCcchHHHHHHHhhcCceEEEEc-cCCCCHHHHhhcceEE
Q 009849            1 MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ-PHKASAPLVAAAKSVW   57 (524)
Q Consensus         1 ML~WAlDNPpPAnIvLISGDrDFS~ALh~LRmR~YNILLA~-P~~ASasL~sAAS~vW   57 (524)
                      |+.|+.+++. .++||||||+||+.++..||.+|++|.++. +..++..|..+|...+
T Consensus        87 ~~~~~~~~~~-d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~  143 (146)
T PF01936_consen   87 ILELAYENPP-DTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFI  143 (146)
T ss_dssp             HHHHG--GG--SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEE
T ss_pred             HHHHhhccCC-CEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEE
Confidence            3567777766 999999999999999999999999999998 6789999999887554

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>cd06167 LabA_like LabA_like proteins

Probab=98.03  E-value=6e-06  Score=71.61  Aligned_cols=53  Identities=28%  Similarity=0.312  Sum_probs=47.4

Q ss_pred             CceecccCCCCceEEEEeCCcchHHHHHHHhhcCceEEEEccC-CCCHHHHhhcc
Q 009849            1 MLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPH-KASAPLVAAAK   54 (524)
Q Consensus         1 ML~WAlDNPpPAnIvLISGDrDFS~ALh~LRmR~YNILLA~P~-~ASasL~sAAS   54 (524)
                      |+.++.++ .+..|||+|||+||+.++..||.+|.+|+++.+. .++..|..++.
T Consensus        91 ~~~~~~~~-~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d  144 (149)
T cd06167          91 ALELAYKR-RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAKTSRELRKAAD  144 (149)
T ss_pred             HHHHhhhc-CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCccChHHHHHhCC
Confidence            35566777 7899999999999999999999999999999988 78999988876

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=95.36  E-value=0.043  Score=51.88  Aligned_cols=49  Identities=16%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             CCCceEEEEeCCcchHHHHHHHhhcCceEEEEc-cCCCCHHHHhhcceEE
Q 009849            9 PAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ-PHKASAPLVAAAKSVW   57 (524)
Q Consensus         9 PpPAnIvLISGDrDFS~ALh~LRmR~YNILLA~-P~~ASasL~sAAS~vW   57 (524)
                      +.-.+++|+|||+||...+.+||.+|-.|+.+. +...+..|..++..-.
T Consensus       104 ~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI  153 (160)
T TIGR00288       104 PNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAI  153 (160)
T ss_pred             CCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEE
Confidence            556899999999999999999999999999998 5568889998886543

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>COG1432 Uncharacterized conserved protein [Function unknown]

Probab=93.20  E-value=0.22  Score=46.84  Aligned_cols=58  Identities=26%  Similarity=0.223  Sum_probs=49.1

Q ss_pred             ccCCCCceEEEEeCCcchHHHHHHHhhcCceEEEEccCC-CCHHHHhhcceEEEcchhc
Q 009849            6 VDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHK-ASAPLVAAAKSVWLWTSLV   63 (524)
Q Consensus         6 lDNPpPAnIvLISGDrDFS~ALh~LRmR~YNILLA~P~~-ASasL~sAAS~vWlW~SLl   63 (524)
                      .+|+.=.+|+|.|||.||..++..++.+|-.|.++.-.. .|..|..+|.....=.++.
T Consensus       106 ~~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~L~~~~  164 (181)
T COG1432         106 ADKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAADYYIDLKSLE  164 (181)
T ss_pred             hcccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHHHhhcceEEchhhh
Confidence            456677899999999999999999999999999998554 6788999988776665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	524
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 25/212 (11%), Positives = 55/212 (25%), Gaps = 68/212 (32%)

Query: 340 RLTPSEYV--QGLIG-----VILLALNTLKIERVVPSEA---NITDCIRYGEPKHRNTDV 389
            L P++ V   G++G     V L    + K++  +  +    N+ +C       +    V
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-------NSPETV 198

Query: 390 RKALN--CAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPK------EVWDR- 440
            + L             RS  +  + +  +        L  +   Y         V +  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAK 257

Query: 441 -IQKF--------LTSSSGRSAIMASQCRYEAALI--------------------LKNSC 471
               F         T     +  +++      +L                      +   
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 472 LPELA----------LGEILKILNMVITPKKW 493
           LP             + E ++  + + T   W
Sbjct: 318 LPREVLTTNPRRLSIIAESIR--DGLATWDNW 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	524
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	97.79

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=97.79  E-value=2e-05  Score=69.85  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=49.2

Q ss_pred             CCCceEEEEeCCcchHHHHHHHhhc-CceEEEEccCC-CCHHHHhhcceEEEcchhc
Q 009849            9 PAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPHK-ASAPLVAAAKSVWLWTSLV   63 (524)
Q Consensus         9 PpPAnIvLISGDrDFS~ALh~LRmR-~YNILLA~P~~-ASasL~sAAS~vWlW~SLl   63 (524)
                      +...+++|+|||.||..++..||.+ |..|+++.++. ++..|..+|.....++.++
T Consensus       107 ~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~  163 (165)
T 2qip_A          107 PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF  163 (165)
T ss_dssp             GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred             ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence            5679999999999999999999998 99999999665 7899999999888888765

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00