Citrus Sinensis ID: 009858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
Protein Sequence
MGKRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVRRQNKKLEGRRN
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEccccccccccHHHHHcccccEEEcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccHHHHccccccEEEcccccccccccHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEEccEEEEcEEcccEEEEEcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEHEEHHHHHHHHHHccccEEEHHHHcccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHccccccEEEEccccccccccccccccHHccccccEEEEccccccccccccccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccHHHccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGKRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTcvvhglqshprntlkdyasaaefeasdgpkllgnkklpwknleyLDLRsnllqgpvpapssnmrvflisnnkfigeiprlicntSTIEIldlsnnslsgtipecigNFSKSLRVLDLrknrfhgtipetfpkgnnlttlnfngnelvgsvprsllncanlqvldlgnnkmkdtfphWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILdlsnnnftgslpaMFFKNMKAMTDIgeaadenkskymgetyyeDSVTLIIKRQEVKLMKILTIFTtidlsknsfhgeipELMGKLHSLRLLNLSqnilsgnipsslgdltdlesldlssnvldgviprelTRLTFLAVLNLSRNklegripegnqfatfssdsyggnlglcgfplskncsndeppqsssvleddsesetgfGWKVVLMGYVCGTVFGMILGYILLStgnpqwimgivdgknhrkVRRQNkklegrrn
Flexible Loop (DISEMBL)
MGKRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFeasdgpkllgnkkLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHgtipetfpkgnnlTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFttidlsknsFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWImgivdgknhrkvrrqnkklegrrn
Low Complexity Region (SEG)
MGKRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKgnnlttlnfngnELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPsslgdltdlesldlssNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQsssvleddseseTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVRRQNKKLEGRRN
Disordered region (IsUnstruct)
********ISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHP**TL**Y*************LLGNKKLPWKNLEYLDLRSNLLQGPVPA*SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE******SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPL************************GFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDG******************
Disordered Region (DISOPRED)
********ISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDI******NKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPL*************************FGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKV************
Disordered Region (DISEMBL)
********ISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC*******************TGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVRRQ*********
Disordered Region (DISPRO)
**KRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC*******************TGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVRRQNK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVRRQNKKLEGRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	523	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.791	0.488	0.384	2e-76
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.732	0.320	0.334	5e-46
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.738	0.319	0.332	3e-43
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.738	0.319	0.332	3e-43
Q42371	976	LRR receptor-like serine/	no	no	0.774	0.414	0.301	9e-40
Q9LJF3	1164	Receptor-like protein kin	no	no	0.724	0.325	0.313	2e-39
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.646	0.326	0.317	2e-39
O82318	960	Probably inactive leucine	no	no	0.638	0.347	0.337	2e-39
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.717	0.367	0.306	3e-39
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.686	0.307	0.306	2e-38

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  286 bits (733), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 171/445 (38%), Positives = 249/445 (55%), Gaps = 31/445 (6%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFI-----------------------GEI 130
           NL +LDL  N L+G VPA    +   ++S+N F                        G I
Sbjct: 400 NLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPI 459

Query: 131 PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT 190
           P +IC  S++  LDLSNN  SG+IP CI NFS S++ L+L  N F GT+P+ F K   L 
Sbjct: 460 PYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELV 519

Query: 191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250
           +L+ + N+L G  P+SL+NC  L+++++ +NK+KD FP WL +L  L VL LRSNKFYG 
Sbjct: 520 SLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGP 579

Query: 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYM--GETYY 308
           L    A   F  LRI+D+S+NNF+G+LP  +F N K MT + E  D+  +++    ++YY
Sbjct: 580 LYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYY 639

Query: 309 EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNI 368
            + + ++ K  ++   +I   F  ID S N  +G IPE +G L  LR+LNLS N  +  I
Sbjct: 640 HE-MEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVI 698

Query: 369 PSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSD 428
           P  L +LT LE+LD+S N L G IP++L  L+FL+ +N S N L+G +P G QF      
Sbjct: 699 PRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCS 758

Query: 429 SYGGNLGLCGFPLSKNCSNDEPPQSSSVL-EDDSESETG-FGWKVVLMGYVCGTVFGMIL 486
           S+  N GL G  L   C +      +S L ED SE+E   F W    + Y  G + G+++
Sbjct: 759 SFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLVI 816

Query: 487 GYILLSTGNPQWIMGIVDGKNHRKV 511
           G+   ++ N +W       K H+ +
Sbjct: 817 GH-FYTSHNHEWFTEKFGRKQHKAL 840

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 199/424 (46%), Gaps = 41/424 (9%)

Query: 98  LDLRSNLLQGPV-----PAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           LDL SN   GP+       P + ++   + NN F G+IP  + N S +  L LS N LSG
Sbjct: 395 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 454

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
           TIP  +G+ SK LR L L  N   G IP+       L TL  + N+L G +P  L NC N
Sbjct: 455 TIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 513

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L  + L NN++    P W+G L  L +L L +N F G++     D     L  LDL+ N 
Sbjct: 514 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNL 571

Query: 273 FTGSLPAMFFKNMKAMTDIGEAA--------DENKSKYMG-------ETYYEDSVTLIIK 317
           F G++PA  FK    +     A         D  K +  G       +    + +  +  
Sbjct: 572 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 631

Query: 318 RQEVKLM-KILTIFTT-----------IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365
           R    +  ++    T+           +D+S N   G IP+ +G +  L +LNL  N +S
Sbjct: 632 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 691

Query: 366 GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATF 425
           G+IP  +GDL  L  LDLSSN LDG IP+ ++ LT L  ++LS N L G IPE  QF TF
Sbjct: 692 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 751

Query: 426 SSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFGWKV---VLMGYVCGTVF 482
               +  N GLCG+PL + C        +                V   +L  +VC  +F
Sbjct: 752 PPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRPASLAGSVAMGLLFSFVC--IF 808

Query: 483 GMIL 486
           G+IL
Sbjct: 809 GLIL 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  177 bits (448), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 199/424 (46%), Gaps = 38/424 (8%)

Query: 95  LEYLDLRSNLLQGPVPA-----PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
           LE LD+ SN L G +P+     P +N++V  + NN F G IP  + N S +  LDLS N 
Sbjct: 403 LETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNY 462

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
           L+G+IP  +G+ SK L+ L L  N+  G IP+       L  L  + N+L G +P SL N
Sbjct: 463 LTGSIPSSLGSLSK-LKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSN 521

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
           C  L  + L NN++    P  LG L  L +L L +N   G++     +     L  LDL+
Sbjct: 522 CTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNC--QSLIWLDLN 579

Query: 270 NNNFTGSLPAMFFK---NMKAMTDIGEAADENKSKYMGETY-----------YEDSVTLI 315
            N   GS+P   FK   N+      G+     K+    E +            ++ +  I
Sbjct: 580 TNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRI 639

Query: 316 IKRQEVKLMKILTIFTT-----------IDLSKNSFHGEIPELMGKLHSLRLLNLSQNIL 364
             R      ++    T            +DLS N   G IP+ +G ++ L +LNL  N L
Sbjct: 640 STRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDL 699

Query: 365 SGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFAT 424
           SG IP  LG L ++  LDLS N  +G IP  LT LT L  ++LS N L G IPE   F T
Sbjct: 700 SGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDT 759

Query: 425 FSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFGWKVVLMG--YVCGTVF 482
           F    +  N  LCG+PL   CS+   P+S +     S          V MG  +    +F
Sbjct: 760 FPDYRFANN-SLCGYPLPIPCSSG--PKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIF 816

Query: 483 GMIL 486
           G+I+
Sbjct: 817 GLII 820

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 199/424 (46%), Gaps = 38/424 (8%)

Query: 95  LEYLDLRSNLLQGPVPA-----PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
           LE LD+ SN L G +P+     P +N++V  + NN F G IP  + N S +  LDLS N 
Sbjct: 403 LETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNY 462

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
           L+G+IP  +G+ SK L+ L L  N+  G IP+       L  L  + N+L G +P SL N
Sbjct: 463 LTGSIPSSLGSLSK-LKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSN 521

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
           C  L  + L NN++    P  LG L  L +L L +N   G++     +     L  LDL+
Sbjct: 522 CTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNC--QSLIWLDLN 579

Query: 270 NNNFTGSLPAMFFK---NMKAMTDIGEAADENKSKYMGETY-----------YEDSVTLI 315
            N   GS+P   FK   N+      G+     K+    E +            ++ +  I
Sbjct: 580 TNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRI 639

Query: 316 IKRQEVKLMKILTIFTT-----------IDLSKNSFHGEIPELMGKLHSLRLLNLSQNIL 364
             R      ++    T            +DLS N   G IP+ +G ++ L +LNL  N L
Sbjct: 640 STRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDL 699

Query: 365 SGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFAT 424
           SG IP  LG L ++  LDLS N  +G IP  LT LT L  ++LS N L G IPE   F T
Sbjct: 700 SGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDT 759

Query: 425 FSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFGWKVVLMG--YVCGTVF 482
           F    +  N  LCG+PL   CS+   P+S +     S          V MG  +    +F
Sbjct: 760 FPDYRFANN-SLCGYPLPLPCSSG--PKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIF 816

Query: 483 GMIL 486
           G+I+
Sbjct: 817 GLII 820

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  165 bits (417), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 153/508 (30%), Positives = 228/508 (44%), Gaps = 103/508 (20%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSS---NMRVFLISNNKFIGEIPRLI--------------- 134
           K LE L L++N L GP+P+  S   N+++  ++ NK  GEIPRLI               
Sbjct: 140 KQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNN 199

Query: 135 ---------CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPK 185
                    C  + +   D+ NNSL+G+IPE IGN + + +VLDL  N+  G IP  F  
Sbjct: 200 LVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCT-AFQVLDLSYNQLTGEIP--FDI 256

Query: 186 GN-NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRS 244
           G   + TL+  GN+L G +P  +     L VLDL  N +  + P  LG L   + L L S
Sbjct: 257 GFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHS 316

Query: 245 NKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE------- 297
           NK  G +     +   SKL  L+L++N+ TG +P    K +  + D+  A ++       
Sbjct: 317 NKLTGSIPPELGN--MSKLHYLELNDNHLTGHIPPELGK-LTDLFDLNVANNDLEGPIPD 373

Query: 298 -------------NKSKYMGE-----------TYYEDSVTLIIKRQEVKLMKILTIFTTI 333
                        + +K+ G            TY   S   I     V+L +I  +  T+
Sbjct: 374 HLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNL-DTL 432

Query: 334 DLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIP 393
           DLS N  +G IP  +G L  L  +NLS+N ++G +P   G+L  +  +DLS+N + G IP
Sbjct: 433 DLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIP 492

Query: 394 RELTRLT-----------------------FLAVLNLSRNKLEGRIPEGNQFATFSSDSY 430
            EL +L                         L VLN+S N L G IP+ N F+ FS DS+
Sbjct: 493 EELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSF 552

Query: 431 GGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYIL 490
            GN GLCG  L+  C +       S+             +  ++G   G +  +IL  +L
Sbjct: 553 IGNPGLCGSWLNSPCHDSRRTVRVSI------------SRAAILGIAIGGL--VILLMVL 598

Query: 491 LSTGNPQWIMGIVDGKNHRKVRRQNKKL 518
           ++   P      +DG   + V     KL
Sbjct: 599 IAACRPHNPPPFLDGSLDKPVTYSTPKL 626

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  164 bits (415), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 196/440 (44%), Gaps = 61/440 (13%)

Query: 103 NLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICN---TSTIEILDLSNNSLSGTIPE 156
           N + G VP      SN+RV  +S+N+F GE+P   C+   +S +E L ++NN LSGT+P 
Sbjct: 361 NNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPV 420

Query: 157 CIGNFSKSLRVLDLRKNRFHGTIPE---TFPK----------------------GNNLTT 191
            +G   KSL+ +DL  N   G IP+   T PK                      G NL T
Sbjct: 421 ELGK-CKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLET 479

Query: 192 LNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL 251
           L  N N L GS+P S+  C N+  + L +N +    P  +G L +L +L L +N   G++
Sbjct: 480 LILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNI 539

Query: 252 RDYEADYYFSKLRILDLSNNNFTGSLPA-------------------MFFKNMKAMTDIG 292
                +     L  LDL++NN TG+LP                     F +N       G
Sbjct: 540 PSELGNC--KNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRG 597

Query: 293 EAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT------IDLSKNSFHGEIPE 346
                       E      +     +  +     + +F++      +DLS N+  G IP 
Sbjct: 598 AGGLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPL 657

Query: 347 LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN 406
             G +  L++LNL  N+L+G IP S G L  +  LDLS N L G +P  L  L+FL+ L+
Sbjct: 658 GYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLD 717

Query: 407 LSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETG 466
           +S N L G IP G Q  TF    Y  N GLCG PL   CS+   P  S          TG
Sbjct: 718 VSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPLPP-CSSGSRPTRSHAHPKKQSIATG 776

Query: 467 FGWKVVLMGYVCGTVFGMIL 486
               +V   ++C  +  M L
Sbjct: 777 MSAGIVF-SFMCIVMLIMAL 795

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 187/391 (47%), Gaps = 53/391 (13%)

Query: 82  PKLLGNKKLPWKNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTS 138
           P + GN       LE+LD+ SN   G  P   +  S +RV  + NN   G I       +
Sbjct: 273 PDVFGN----LTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINLNFTGFT 328

Query: 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFP-------------- 184
            + +LDL++N  SG +P+ +G+  K +++L L KN F G IP+TF               
Sbjct: 329 DLCVLDLASNHFSGPLPDSLGHCPK-MKILSLAKNEFRGKIPDTFKNLQSLLFLSLSNNS 387

Query: 185 ------------KGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLG 232
                          NL+TL  + N +   +P ++    NL +L LGN  ++   P WL 
Sbjct: 388 FVDFSETMNVLQHCRNLSTLILSKNFIGEEIPNNVTGFDNLAILALGNCGLRGQIPSWLL 447

Query: 233 TLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMF--FKNMKAMTD 290
             ++L+VL L  N FYG +  +        L  +D SNN  TG++P      KN+  +  
Sbjct: 448 NCKKLEVLDLSWNHFYGTIPHWIGK--MESLFYIDFSNNTLTGAIPVAITELKNLIRLN- 504

Query: 291 IGEAADENKSKYMGETYYEDSVTLIIKRQE----VKLMKILTIFTTIDLSKNSFHGEIPE 346
            G A+    S           + L +KR +    +   ++     +I L+ N  +G I  
Sbjct: 505 -GTASQMTDSS---------GIPLYVKRNKSSNGLPYNQVSRFPPSIYLNNNRLNGTILP 554

Query: 347 LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN 406
            +G+L  L +L+LS+N  +G IP S+  L +LE LDLS N L G IP     LTFL+  +
Sbjct: 555 EIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFS 614

Query: 407 LSRNKLEGRIPEGNQFATFSSDSYGGNLGLC 437
           ++ N+L G IP G QF +F   S+ GNLGLC
Sbjct: 615 VAYNRLTGAIPSGGQFYSFPHSSFEGNLGLC 645

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 185/358 (51%), Gaps = 24/358 (6%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN 148
           K LEY+ L  N L G +P PS     N+     S+N   GEIP L+    ++EIL L +N
Sbjct: 265 KKLEYMFLYQNKLSGQIP-PSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSN 323

Query: 149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL 208
           +L+G IPE + +  + L+VL L  NRF G IP    K NNLT L+ + N L G +P +L 
Sbjct: 324 NLTGKIPEGVTSLPR-LKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLC 382

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI--- 265
           +  +L  L L +N +    P  LG  + L+ + L++N F G L        F+KL++   
Sbjct: 383 DSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKL-----PRGFTKLQLVNF 437

Query: 266 LDLSNNNFTGS-----LPAMFFKNMKAMTDIGEAADENKSKYMGE-TYYEDSVTLIIKRQ 319
           LDLSNNN  G+     +P +   ++      GE  D ++SK + +     + ++ ++ + 
Sbjct: 438 LDLSNNNLQGNINTWDMPQLEMLDLSVNKFFGELPDFSRSKRLKKLDLSRNKISGVVPQG 497

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
            +   +I+ +    DLS+N   G IP  +    +L  L+LS N  +G IPSS  +   L 
Sbjct: 498 LMTFPEIMDL----DLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLS 553

Query: 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLC 437
            LDLS N L G IP+ L  +  L  +N+S N L G +P    F   ++ +  GN+ LC
Sbjct: 554 DLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLC 611

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 198/443 (44%), Gaps = 68/443 (15%)

Query: 94  NLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
           NL  LD+ SN   G +P      + +  F   +N F GE+PR + N+ +I +L L NN+L
Sbjct: 255 NLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSNLFNGEMPRSLSNSRSISLLSLRNNTL 314

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL--- 207
           SG I       + +L  LDL  N F G+IP   P    L T+NF   + +  +P S    
Sbjct: 315 SGQIYLNCSAMT-NLTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQIPESFKNF 373

Query: 208 ------------------------------------------------LNCANLQVLDLG 219
                                                           L   NL+VL + 
Sbjct: 374 QSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEELPSVPSLQFKNLKVLIIA 433

Query: 220 NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPA 279
           + +++ T P WL     LQ+L L  N+  G +  +      + L  LDLSNN F G +P 
Sbjct: 434 SCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGS--LNSLFYLDLSNNTFIGEIPH 491

Query: 280 MFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNS 339
               +++++     A +E    +    +++   T       ++  +  +    IDLS NS
Sbjct: 492 SL-TSLQSLVSKENAVEEPSPDF---PFFKKKNT---NAGGLQYNQPSSFPPMIDLSYNS 544

Query: 340 FHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL 399
            +G I    G L  L +LNL  N LSGNIP++L  +T LE LDLS N L G IP  L +L
Sbjct: 545 LNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKL 604

Query: 400 TFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLED 459
           +FL+  +++ NKL G IP G QF TF + S+ GN GLCG   S     D+ P  S+V   
Sbjct: 605 SFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHASPCHITDQSPHGSAVKSK 664

Query: 460 DSESETGFGWKVVLMGYVCGTVF 482
            +  +       V +G   GTVF
Sbjct: 665 KNIRKI----VAVAVGTGLGTVF 683

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 189/418 (45%), Gaps = 59/418 (14%)

Query: 95  LEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILD---LSNN 148
           + YL +  N + G VP      SN+RV  +S+N F G +P   C+  +  +L+   ++NN
Sbjct: 353 ITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANN 412

Query: 149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE--------------------TFP---- 184
            LSGT+P  +G   KSL+ +DL  N   G IP+                    T P    
Sbjct: 413 YLSGTVPMELGK-CKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVC 471

Query: 185 -KGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243
            KG NL TL  N N L GS+P S+  C N+  + L +N++    P  +G L +L +L L 
Sbjct: 472 VKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLG 531

Query: 244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNM----------KAMTDIGE 293
           +N   G++     +     L  LDL++NN TG LP                 K    +  
Sbjct: 532 NNSLSGNVPRQLGN--CKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRN 589

Query: 294 AADENKSKYMGETYYE-------DSVTLIIKRQEVKLMKILTIFT--------TIDLSKN 338
               +     G   +E       + + ++      ++   +T++T          D+S N
Sbjct: 590 EGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYN 649

Query: 339 SFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR 398
           +  G IP   G +  L++LNL  N ++G IP S G L  +  LDLS N L G +P  L  
Sbjct: 650 AVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGS 709

Query: 399 LTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSV 456
           L+FL+ L++S N L G IP G Q  TF    Y  N GLCG PL    S    P +S +
Sbjct: 710 LSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPITSRI 767

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
359493544	978	PREDICTED: receptor-like protein 12-like	0.816	0.436	0.570	1e-134
225459979	979	PREDICTED: receptor-like protein 12-like	0.816	0.436	0.561	1e-133
359493479	814	PREDICTED: receptor-like protein 12-like	0.804	0.517	0.578	1e-133
359493539	1001	PREDICTED: receptor-like protein 12-like	0.829	0.433	0.560	1e-132
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.829	0.440	0.557	1e-130
225462116	1001	PREDICTED: receptor-like protein 12-like	0.760	0.397	0.570	1e-130
225455498	980	PREDICTED: receptor-like protein 12-like	0.829	0.442	0.548	1e-129
296082718	745	unnamed protein product [Vitis vinifera]	0.787	0.553	0.577	1e-129
296089526	616	unnamed protein product [Vitis vinifera]	0.837	0.711	0.532	1e-125
224116970	921	predicted protein [Populus trichocarpa]	0.804	0.457	0.546	1e-124

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/431 (57%), Positives = 312/431 (72%), Gaps = 4/431 (0%)

Query: 86  GNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDL 145
           G + LPW+NL  LDL SNLLQGP+P   ++   F +S+NK  GEI  LIC  S++ I DL
Sbjct: 542 GFEMLPWENLYTLDLHSNLLQGPLPTLPNSTFFFSVSHNKLSGEISSLICKASSMRIFDL 601

Query: 146 SNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
           SNN+LSG +P C+GNFSK L VL+LR+N+FHG IP+TF KGN +  L+FN N+L G VPR
Sbjct: 602 SNNNLSGVLPHCLGNFSKDLFVLNLRRNQFHGIIPQTFLKGNAIRNLDFNDNQLEGPVPR 661

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
           SL+ C  L+VLDLGNNK+ DTFPHWLGTL ELQVL+LRSN F+GH+   +    F  LRI
Sbjct: 662 SLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGRSKIKSPFMSLRI 721

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           +DL++N+F G LP M+ +++KA+ +I E       KYMGE YY+DS+ + IKR E++ +K
Sbjct: 722 IDLAHNDFEGDLPEMYLRSLKAIMNIDEG--NMTRKYMGEEYYQDSIVVTIKRLEIEFVK 779

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
           IL  FTTIDLS N F GEIP+ +G L+SLR LNLS N L+G+IPSS G+L  LESLDLSS
Sbjct: 780 ILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSS 839

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC 445
           N L G IP+ELT LTFL VLNLS+N L G IP+GNQF TF +DSY  N GLCGFPLSK C
Sbjct: 840 NKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQGNQFDTFGNDSYNENSGLCGFPLSKKC 899

Query: 446 SNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDG 505
             DE P+SS   E D+E + GF WK+ LMGY CG + G+ LG ++  TG P+W+  +V+ 
Sbjct: 900 IIDETPESSK--ETDAEFDGGFDWKITLMGYGCGLIIGLSLGCLIFLTGKPKWLTTMVEE 957

Query: 506 KNHRKVRRQNK 516
             H+K+ R  K
Sbjct: 958 NIHKKITRSKK 968

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/431 (56%), Positives = 310/431 (71%), Gaps = 4/431 (0%)

Query: 86  GNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDL 145
           G K LPWKN+  LDL SNLLQGP+P P ++   F +S+NK  GEI  LIC  S++EILDL
Sbjct: 543 GFKMLPWKNIGILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEISSLICRASSMEILDL 602

Query: 146 SNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
           S+N+LSG +P C+GNFSK L VL+LR+NRFHG IP+TF KGN +  L+FN N+L G VPR
Sbjct: 603 SDNNLSGRLPHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKGNAIRDLDFNDNQLDGLVPR 662

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
           SL+ C  L+VLDLGNNK+ DTFPHWLGTL +LQVL+LRSN F+GH+R  +    F  LRI
Sbjct: 663 SLIICRKLEVLDLGNNKINDTFPHWLGTLSKLQVLVLRSNSFHGHIRHSKIKSPFMSLRI 722

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           +DL++N+F G LP ++ +++KA+ ++ E       KYMG  YY+DS+ + IK  E++ +K
Sbjct: 723 IDLAHNDFEGDLPELYLRSLKAIMNVNEG--NMTRKYMGNNYYQDSIMVTIKGLEIEFVK 780

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
           IL  FTTIDLS N F GEIP+ +G L+SLR LNLS N L G+IPS LG+L  LESLDLSS
Sbjct: 781 ILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLGGHIPSPLGNLKSLESLDLSS 840

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC 445
           N L G IP+ELT LTFL VLNLS+N L G IP GNQF TF +DSY  N GLCGFPLSK C
Sbjct: 841 NKLIGRIPQELTSLTFLEVLNLSQNNLTGFIPRGNQFETFGNDSYNENSGLCGFPLSKKC 900

Query: 446 SNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDG 505
           + DE  + S   E ++E + GF WK+ LMGY CG V G+ LG ++  TG P+W+  +V+ 
Sbjct: 901 TADETLEPSK--EANTEFDGGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPEWLTRMVEE 958

Query: 506 KNHRKVRRQNK 516
             H+ + R  +
Sbjct: 959 NIHKTITRSKR 969

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493479|ref|XP_003634609.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/425 (57%), Positives = 306/425 (72%), Gaps = 4/425 (0%)

Query: 86  GNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDL 145
           G + LPWK ++ LDLRSNLLQGP+P P  +   F ISNNK  GEI   IC   +I +LDL
Sbjct: 378 GFELLPWKKIQILDLRSNLLQGPLPTPPYSTFFFAISNNKLSGEISPSICKVHSIGVLDL 437

Query: 146 SNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
           SNN+LSG +P C+GNFSK L VL+L+ NRFHGTIP+TF KGN +  L+FNGN+L G VPR
Sbjct: 438 SNNNLSGRLPHCLGNFSKDLSVLNLQGNRFHGTIPQTFLKGNVIRNLDFNGNQLEGLVPR 497

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
           SL+ C  L+VLDLGNNK+ DTFPHWL TL +LQVL+LRSN F+GH+   +    F  LRI
Sbjct: 498 SLIICRELEVLDLGNNKINDTFPHWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRI 557

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           +DL+ N+F G LP M+ +++KA+ ++ E   +   KYMG+ YY+DS+ + IK  E++L+K
Sbjct: 558 IDLARNDFEGDLPEMYLRSLKAIMNVDEG--KMTRKYMGDHYYQDSIMVTIKGLEIELVK 615

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
           IL  FTTIDLS N F GEIPE +G L+SLR LNLS N L G+IPSS G+L  LESLDLSS
Sbjct: 616 ILNTFTTIDLSSNKFQGEIPESIGNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSS 675

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC 445
           N L G IP+ELT LTFL VLNLS+N L G IP GNQF TF +DSY GN GLCGFPLSK C
Sbjct: 676 NKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKC 735

Query: 446 SNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDG 505
           + DE  + S   E D+E E+GF WK+ LMGY CG V G+ LG  +  TG P+W + I++ 
Sbjct: 736 TTDETLEPSK--EADAEFESGFDWKITLMGYGCGLVIGLSLGCFIFLTGKPEWFVRIIEE 793

Query: 506 KNHRK 510
             H K
Sbjct: 794 NLHNK 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/441 (56%), Positives = 314/441 (71%), Gaps = 7/441 (1%)

Query: 86   GNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDL 145
            G + LPWKN+  LDL SNLLQGP+P P ++   F +S+NK  GEI  LIC  S++ +LDL
Sbjct: 565  GFEMLPWKNMHILDLHSNLLQGPLPIPPNSTFFFSVSHNKLSGEISPLICKVSSMGVLDL 624

Query: 146  SNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
            S+N+LSG +P C+GNFSK L VL+LR+NRFHGTIP+TF KGN +  L+FN N+L G VPR
Sbjct: 625  SSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQTFLKGNAIRNLDFNDNQLEGLVPR 684

Query: 206  SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
            SL+    L+VLDLGNNK+ DTFPHWL TL ELQVL+LRSN F+GH+   +    F  LRI
Sbjct: 685  SLIIYRKLEVLDLGNNKINDTFPHWLRTLPELQVLVLRSNSFHGHIGFSKIKSPFMSLRI 744

Query: 266  LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
            +DL++N+F G LP M+ +++KA+ +I E       KYMGE YY+DS+T+  K  +V+L+K
Sbjct: 745  IDLAHNDFEGDLPEMYLRSLKAIMNIDEG--NMARKYMGEYYYQDSITVTTKGLDVELVK 802

Query: 326  ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
            IL  FTT+DLS N F GEIP+ +G L+SLR LNLS N L+G IPSS G+L  LESLDLSS
Sbjct: 803  ILNTFTTVDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLTGLIPSSFGNLKSLESLDLSS 862

Query: 386  NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC 445
            N L G IP++LT LTFL VLNLS+N L G IP GNQF TF +DSY  N GLCGFPLSK C
Sbjct: 863  NELIGSIPQQLTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKC 922

Query: 446  SNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDG 505
              DE P+ S   E D++ + GF WK+ LMGY CG V G+ LG ++  TG P+W + I++ 
Sbjct: 923  IADETPEPSK--EADAKFDGGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPKWFVWIIED 980

Query: 506  KNHRKVRRQNK---KLEGRRN 523
              H+K+RR      K   RRN
Sbjct: 981  NIHKKIRRSKMSTCKQGARRN 1001

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/441 (55%), Positives = 309/441 (70%), Gaps = 7/441 (1%)

Query: 86  GNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDL 145
           G + LPWKNL  LDL SNLLQGP+P P ++   F +S+NK  GEI  L C  S++ ILDL
Sbjct: 549 GFEMLPWKNLYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEILSLFCKASSMRILDL 608

Query: 146 SNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
           SNN+LSG +P C+GNFSK L VL+L +NRFHG IP+TF KGN +  L+FNGN+L G +PR
Sbjct: 609 SNNNLSGMLPLCLGNFSKYLSVLNLGRNRFHGIIPQTFLKGNAIRNLDFNGNQLEGLLPR 668

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
           SL+ C  L+VLDLGNNK+ DTFPHWLGTL ELQVL+LRSN F+GH+   +    F  LRI
Sbjct: 669 SLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRI 728

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           +DL+ N+F G LP M+ +++KA  ++ E       KYMG++YY+DSV + IK  E++ +K
Sbjct: 729 IDLAYNDFEGDLPEMYLRSLKATMNVDEG--NMTRKYMGDSYYQDSVMVTIKGLEIEFVK 786

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
           IL  FTTIDLS N F GEIP+ +G L+SLR LNLS N L+G+IPSS  +L  LESLDLSS
Sbjct: 787 ILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNSLAGHIPSSFKNLKLLESLDLSS 846

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC 445
           N L G IP+ELT LTFL VLNLS N L G IP GNQF TF +DSY  N GLCGFPLSK C
Sbjct: 847 NKLIGSIPQELTSLTFLEVLNLSENHLTGFIPRGNQFDTFGNDSYSENSGLCGFPLSKKC 906

Query: 446 SNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDG 505
             DE  +SS   E D E + GF WK+ LMGY CG V G+ LG ++  TG P+  +  ++ 
Sbjct: 907 ITDEASESSK--EADEEFDGGFDWKITLMGYGCGLVIGLSLGCLIFLTGKPKRFVWFIEE 964

Query: 506 KNHRKVRRQNK---KLEGRRN 523
             H+K+RR  +   +   RRN
Sbjct: 965 NIHKKIRRSTRSTCRQGARRN 985

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/424 (57%), Positives = 301/424 (70%), Gaps = 26/424 (6%)

Query: 88  KKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
           ++ PWKN+ +LDL SNLLQGP+P+                     LIC  S I +LD SN
Sbjct: 589 ERFPWKNMLFLDLHSNLLQGPLPS---------------------LICEMSYISVLDFSN 627

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
           N+LSG IP+C+GNFS+SL VLDLR N+ HG IPETF KGN +  L FNGN+L G +PRSL
Sbjct: 628 NNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSL 687

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILD 267
           +NC  LQVLDLGNN++ DTFP+WL TL ELQVLILRSN+F+GH+      + F KLRI+D
Sbjct: 688 INCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMD 747

Query: 268 LSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL 327
           LS N+F+GSLP M+ KN KAM ++ E  D+ K KYMGE YY DS+   IK  + + + IL
Sbjct: 748 LSRNDFSGSLPEMYLKNFKAMMNVTE--DKMKLKYMGEYYYRDSIMGTIKGFDFEFV-IL 804

Query: 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNV 387
           + FTTIDLS N F GEI + +G L SLR LNLS N L+G+IPSSLG+L  LESLDLSSN 
Sbjct: 805 STFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNK 864

Query: 388 LDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSN 447
           L G IPRELT LTFL VLNLS+N L G IP GNQF TF+++SY GN+GLCG PLSK C  
Sbjct: 865 LSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVV 924

Query: 448 DEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKN 507
           DE PQ     E++ ES+TGF WKV+LMGY CG V G+ +G ++  T  P+W + +++G  
Sbjct: 925 DEAPQPPK--EEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIEGDR 982

Query: 508 HRKV 511
           H+KV
Sbjct: 983 HKKV 986

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/441 (54%), Positives = 310/441 (70%), Gaps = 7/441 (1%)

Query: 86  GNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDL 145
           G + LPWKN+  LDL SNLLQG +P P ++   F + +NK  G I  LIC  S+I +LDL
Sbjct: 544 GFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRVLDL 603

Query: 146 SNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
           S+N+LSG +P C+GNFSK L VL+LR+NRFHGTIP++F KGN +  L+FN N L G VPR
Sbjct: 604 SSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLVPR 663

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
           SL+ C  L+VL+LGNNK+ DTFPHWLGTL ELQVL+LRSN F+GH+   +    F  LRI
Sbjct: 664 SLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSLRI 723

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           +DL++N+F G LP M+ +++K   ++ E  D    KYMG  YYEDSV + IK  E++ +K
Sbjct: 724 IDLAHNDFEGDLPEMYLRSLKVTMNVDE--DNMTRKYMGGNYYEDSVMVTIKGLEIEFVK 781

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
           IL  F TIDLS N F GEIP+ +G L+SLR LNLS N L+G+IPSS G+L  LESLDLSS
Sbjct: 782 ILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSS 841

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC 445
           N L G IP++LT L FL VLNLS+N L G IP+GNQF TF +DSY GN  LCGFPLSK C
Sbjct: 842 NKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPLSKKC 901

Query: 446 SNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDG 505
             DE P+ S   E+D+E E  F WK +L+GY CG V+G+ LG I+   G P+W + I++ 
Sbjct: 902 IADETPEPSK--EEDAEFENKFDWKFMLVGYGCGLVYGLSLGGIIFLIGKPKWFVSIIEE 959

Query: 506 KNHRKVRRQNK---KLEGRRN 523
             H+K+RR  +   +   RRN
Sbjct: 960 NIHKKIRRCKRSTCRQGARRN 980

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082718|emb|CBI21723.3| unnamed protein product [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/421 (57%), Positives = 304/421 (72%), Gaps = 9/421 (2%)

Query: 94  NLEYLDLRSNLLQGPVPAPS---SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
           +LE +DL SN L GPVP+      N+    +S+N  +G +P LIC  S I +LD SNN+L
Sbjct: 316 SLESIDLSSNELDGPVPSSIFELVNLTYLQLSSNN-LGPLPSLICEMSYISVLDFSNNNL 374

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
           SG IP+C+GNFS+SL VLDLR N+ HG IPETF KGN +  L FNGN+L G +PRSL+NC
Sbjct: 375 SGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINC 434

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
             LQVLDLGNN++ DTFP+WL TL ELQVLILRSN+F+GH+      + F KLRI+DLS 
Sbjct: 435 RRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSR 494

Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330
           N+F+GSLP M+ KN KAM ++ E  D+ K KYMGE YY DS+   IK  + + + IL+ F
Sbjct: 495 NDFSGSLPEMYLKNFKAMMNVTE--DKMKLKYMGEYYYRDSIMGTIKGFDFEFV-ILSTF 551

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
           TTIDLS N F GEI + +G L SLR LNLS N L+G+IPSSLG+L  LESLDLSSN L G
Sbjct: 552 TTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSG 611

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEP 450
            IPRELT LTFL VLNLS+N L G IP GNQF TF+++SY GN+GLCG PLSK C  DE 
Sbjct: 612 RIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDEA 671

Query: 451 PQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRK 510
           PQ     E++ ES+TGF WKV+LMGY CG V G+ +G ++  T  P+W + +++G  H+K
Sbjct: 672 PQPPK--EEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIEGDRHKK 729

Query: 511 V 511
           V
Sbjct: 730 V 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089526|emb|CBI39345.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/462 (53%), Positives = 310/462 (67%), Gaps = 24/462 (5%)

Query: 64  RNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQG---------------P 108
           RN +    S+  F     P + GN      NL+YLD+ +N L+G               P
Sbjct: 148 RNLISLVLSSNNFSGQLPPSI-GN----LTNLKYLDISNNQLEGAINLSMNQLYGSIPRP 202

Query: 109 VPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL 168
           +P P  +   F ISNNK  GEI   IC   +I +LDLSNN+LSG +P C+GNFSK L VL
Sbjct: 203 LPTPPYSTFFFAISNNKLSGEISPSICKVHSIGVLDLSNNNLSGRLPHCLGNFSKDLSVL 262

Query: 169 DLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP 228
           +L+ NRFHGTIP+TF KGN +  L+FNGN+L G VPRSL+ C  L+VLDLGNNK+ DTFP
Sbjct: 263 NLQGNRFHGTIPQTFLKGNVIRNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFP 322

Query: 229 HWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAM 288
           HWL TL +LQVL+LRSN F+GH+   +    F  LRI+DL+ N+F G LP M+ +++KA+
Sbjct: 323 HWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAI 382

Query: 289 TDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM 348
            ++ E   +   KYMG+ YY+DS+ + IK  E++L+KIL  FTTIDLS N F GEIPE +
Sbjct: 383 MNVDEG--KMTRKYMGDHYYQDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESI 440

Query: 349 GKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408
           G L+SLR LNLS N L G+IPSS G+L  LESLDLSSN L G IP+ELT LTFL VLNLS
Sbjct: 441 GNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLS 500

Query: 409 RNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFG 468
           +N L G IP GNQF TF +DSY GN GLCGFPLSK C+ DE  + S   E D+E E+GF 
Sbjct: 501 QNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKCTTDETLEPSK--EADAEFESGFD 558

Query: 469 WKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRK 510
           WK+ LMGY CG V G+ LG  +  TG P+W + I++   H K
Sbjct: 559 WKITLMGYGCGLVIGLSLGCFIFLTGKPEWFVRIIEENLHNK 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/423 (54%), Positives = 299/423 (70%), Gaps = 2/423 (0%)

Query: 95  LEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTI 154
           L+YLDL SNLLQ P P    +M + LI+NNK  GEIP  ICN +T +I++LSNNSLSG I
Sbjct: 499 LQYLDLTSNLLQQPFPILPQSMYILLIANNKLTGEIPPWICNITTFQIINLSNNSLSGNI 558

Query: 155 PECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQ 214
           P+C+GNFS  L VL+LR N FHGTIP +F +GN + +L+ NGNEL GS+P SL NC  L+
Sbjct: 559 PQCLGNFSTELSVLNLRSNSFHGTIPGSFTEGNKIRSLDLNGNELEGSLPLSLANCKMLE 618

Query: 215 VLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274
           VLDLGNN + D+FP WL TL +LQVL+LRSN+ +G + +  A   FS LRI+DLS+N F 
Sbjct: 619 VLDLGNNYINDSFPLWLQTLPKLQVLVLRSNRLHGSIGNPTAISPFSSLRIIDLSHNEFI 678

Query: 275 GSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTID 334
           G LP  +  N +AM  + +   +   KY+GE YY+DS+ L +K  E+ + +ILTIFTTID
Sbjct: 679 GLLPTQYIANFQAMKKV-DGEVKATPKYIGEIYYQDSIVLTMKGTEIPMERILTIFTTID 737

Query: 335 LSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPR 394
           LS N F G+IP+ +G L SL +LN+S+N ++G IPSSLG+LT LESLDLSSN L G IP 
Sbjct: 738 LSSNRFEGQIPKEVGLLSSLIVLNISRNSVTGQIPSSLGNLTALESLDLSSNGLGGGIPS 797

Query: 395 ELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQSS 454
           +LTRLTFLAVLNLS N+L G IP G+QF TF +DSY GNL LCGFPLS  CS D  PQ  
Sbjct: 798 QLTRLTFLAVLNLSYNQLVGPIPHGSQFDTFQNDSYVGNLRLCGFPLSVKCSGDVAPQPP 857

Query: 455 SVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVRRQ 514
              E +  +   F WK  ++GY CG V G+ +GYI+ +TG PQW +  V+ +  + +RR+
Sbjct: 858 PFQEKEDPASL-FNWKFAMIGYGCGLVIGLSVGYIVFTTGKPQWFVRKVEVEQKKWLRRR 916

Query: 515 NKK 517
            K+
Sbjct: 917 TKR 919

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.770	0.460	0.399	5e-76
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.785	0.508	0.392	8.4e-74
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.787	0.404	0.388	1.7e-73
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.789	0.431	0.384	2.8e-73
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.787	0.460	0.388	1.2e-72
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.783	0.576	0.386	3.2e-72
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.787	0.515	0.387	6.7e-72
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.734	0.407	0.395	8.6e-72
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.760	0.490	0.384	2.1e-70
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.785	0.612	0.369	3.8e-69

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 165/413 (39%), Positives = 236/413 (57%)

Query:   101 RSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGN 160
             RS  L+  V  P  +M+ F  SNN F G+IP  IC+  ++ ILDLSNN+ SG IP C+G 
Sbjct:   467 RSTKLEKTV-VPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGK 525

Query:   161 FSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCANLQVLDLGN 220
             F  +L  L+LR+NR  G++P+T  K            EL G +PRSL++ + L+VL++ +
Sbjct:   526 FKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHN--ELEGKLPRSLIHFSTLEVLNVES 583

Query:   221 NKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAM 280
             N++ DTFP WL +L++LQVL+LRSN F+G +        F KLRI+D+S N+F G+LP+ 
Sbjct:   584 NRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTR----FPKLRIIDISRNHFNGTLPSD 639

Query:   281 FFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSF 340
              F     M  + +  D    KYMG  YY DS+ L+ K  E++L++IL I+T +D S N F
Sbjct:   640 CFVEWTGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKF 699

Query:   341 HGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLT 400
              GEIP  +G L  L +LNLS N  +G+IP                N L G IP+EL  L+
Sbjct:   700 EGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLS 759

Query:   401 FLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQXXXXXXXX 460
             +LA +N S N+L G++P G QF T S+ S+  NLGLCG PL + C     P         
Sbjct:   760 YLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEE-CRVVHEPTPSGESETL 818

Query:   461 XXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVRR 513
                     W    +G+  G V G+ +G+I+LS+  P+W   ++   N R+ RR
Sbjct:   819 ESEQV-LSWIAAAIGFTPGIVLGLTIGHIVLSS-KPRWFFKVLYINNSRRRRR 869

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 165/420 (39%), Positives = 232/420 (55%)

Query:    94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
             ++  LDL  N  +GP P P  ++ +    NN F G IP   CN S++ ILDLS N+L+G 
Sbjct:   365 SVRLLDLAYNHFRGPFPKPPLSINLLSAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGP 424

Query:   154 IPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCANL 213
             IP C+ +F +SL V++LRKN   G++P+ F              +L G +PRSLLNC+ L
Sbjct:   425 IPRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSML 484

Query:   214 QVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE-ADYYFSKLRILDLSNNN 272
             + + + +NK+KDTFP WL  L +LQ L LRSNKF+G +   +     F KLRIL++S+NN
Sbjct:   485 RFVSVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNN 544

Query:   273 FTGSLPAMFFKNMKAMT-DIGEAADENKSKYMGETY-YEDSVTLIIKRQEVKLMKILTIF 330
             FTGSLP  +F N +A +  + E        Y    Y YED+V L  K   ++  K+LT +
Sbjct:   545 FTGSLPPNYFVNWEASSLQMNEDGRIYMGDYNNPYYIYEDTVDLQYKGLFMEQGKVLTSY 604

Query:   331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDG 390
              TID S N   G+IPE +G L +L  LNLS N  +G+IP                N L G
Sbjct:   605 ATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSG 664

Query:   391 VIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEP 450
              IP  L  L+FLA ++++ N+L G IP+G Q    S  S+ GN GLCG PL  +C     
Sbjct:   665 TIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSCFAPPT 724

Query:   451 PQXXXXXXXXXXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRK 510
             PQ                WK V++GY  G + G+I+ +++ S   P+W++ IV G   RK
Sbjct:   725 PQPKEEDEDEEV----LNWKAVVIGYWPGLLLGLIMAHVIASF-KPKWLVKIV-GPEKRK 778

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 164/422 (38%), Positives = 237/422 (56%)

Query:    88 KKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
             K  P   L  +DL SN  QGP+  PS ++R F  SNN F G+IPR IC  S++EILDLSN
Sbjct:   585 KASPESQLTSVDLSSNAFQGPLFLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSN 644

Query:   148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSL 207
             N+L+G++P C+     SL  LDLR N   G++PE F               + G +P SL
Sbjct:   645 NNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSL 704

Query:   208 LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY-FSKLRIL 266
               C++L+VL++G+N++ D FP  L +L++LQVL+L SNKF+G L + +  ++ F +L+I+
Sbjct:   705 TGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQII 764

Query:   267 DLSNNNFTGSLPAMFFKNMKAMT-----DIGEAADENKSKYMGETYYEDSVTLIIKRQEV 321
             D+S+N+F G LP+ +F N  AM+     +I     +N S Y     Y  S+ L+ K   +
Sbjct:   765 DVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSVYGSSLGYYTSLVLMSKGVSM 824

Query:   322 KLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXX 381
             ++ ++LTI+T IDLS N  HG+IP+ +G L  LR+LN+S N  +G+IP            
Sbjct:   825 EMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESL 884

Query:   382 XXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPL 441
                 N + G IP EL  L+ LA +N+S N+L G IP+G QF      SY GN GL G  L
Sbjct:   885 DISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSL 944

Query:   442 SKNCSN---DEPPQXXXXXXXXXXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQW 498
                C +     P Q              F W    +G+  G VFG+ +GYI++S  + QW
Sbjct:   945 ENVCGHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIVVSYKH-QW 1003

Query:   499 IM 500
              M
Sbjct:  1004 FM 1005

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 164/426 (38%), Positives = 243/426 (57%)

Query:    95 LEYLDLRSNLLQG-PVPA-PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             L Y++L +N L G   P+ P  ++   L SNN FIG+IP  IC   ++  LDLS+N+ +G
Sbjct:   536 LYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNG 595

Query:   153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCAN 212
             +IP C+G+   +L VL+LR+N   G +P+                +LVG +PRSL   + 
Sbjct:   596 SIPRCMGHLKSTLSVLNLRQNHLSGGLPKQI--FEILRSLDVGHNQLVGKLPRSLSFFST 653

Query:   213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
             L+VL++ +N++ DTFP WL +L +LQVL+LRSN F+G +  +EA   F +LRI+D+S+N 
Sbjct:   654 LEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPI--HEAT--FPELRIIDISHNR 709

Query:   273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE-TYYEDSVTLIIKRQEVKLMKILTIFT 331
             F G+LP  +F    AM+ +G+  D++  KYMG   YY+DS+ L+ K   ++L++ILTI+T
Sbjct:   710 FNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGVAMELVRILTIYT 769

Query:   332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGV 391
              +D S N F GEIP+ +G L  L +L+LS N  SG++P                N L G 
Sbjct:   770 AVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGE 829

Query:   392 IPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPP 451
             IP+EL  L+FLA +N S N+L G +P G QF T +  ++  NLGL G  L + C +   P
Sbjct:   830 IPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHTP 889

Query:   452 ---QXXXXXXXXXXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNH 508
                Q                W    +G+  G  FG++ GYIL+S   P+W M   D  N 
Sbjct:   890 ASHQQFETPETEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVSY-KPEWFMNPFDRNNR 948

Query:   509 RKVRRQ 514
             R+ R +
Sbjct:   949 RQKRHK 954

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 165/425 (38%), Positives = 236/425 (55%)

Query:    94 NLEYLDLRSNLLQG-PVPA-PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             NL YL+L +N   G   P  P  +M   L SNN F G+IP  IC   ++  LDLS+N+ S
Sbjct:   473 NLFYLNLSNNTFIGFQRPTKPEPSMAYLLGSNNNFTGKIPSFICELRSLYTLDLSDNNFS 532

Query:   152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCA 211
             G+IP C+ N   +L  L+LR+N   G  PE                +LVG +PRSL   +
Sbjct:   533 GSIPRCMENLKSNLSELNLRQNNLSGGFPEHI--FESLRSLDVGHNQLVGKLPRSLRFFS 590

Query:   212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
             NL+VL++ +N++ D FP WL +L++LQVL+LRSN F+G +   +A   F KLRI+D+S+N
Sbjct:   591 NLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHGPIN--QA--LFPKLRIIDISHN 646

Query:   272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
             +F GSLP  +F     M+ +G   D +   Y+G  YY+DS+ L+ K  E +L++ILTI+T
Sbjct:   647 HFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYLGSGYYQDSMVLMNKGVESELVRILTIYT 706

Query:   332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGV 391
              +D S N F GEIP+ +G L  L +LNLS N  +G+IP                N L G 
Sbjct:   707 AVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGE 766

Query:   392 IPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPP 451
             IP+E+  L+ L+ +N S N+L G +P G QF T    S+ GNLGL G  L + C +   P
Sbjct:   767 IPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHTP 826

Query:   452 ---QXXXXXXXXXXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNH 508
                Q                W    +G+  G  FG++ GYIL+S   P+W M    G+N+
Sbjct:   827 ASHQQFETPQTEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVSY-KPEWFMNPF-GRNN 884

Query:   509 RKVRR 513
             R+ +R
Sbjct:   885 RRRKR 889

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 163/422 (38%), Positives = 236/422 (55%)

Query:    94 NLEYLDLRSNLLQG-PVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             NL Y++L  N   G   P  P  +M   L SNN F G+IP  IC   ++E LDLS+N+ S
Sbjct:   290 NLFYVNLSYNTFIGFQRPNKPEPSMGHLLGSNNNFTGKIPSFICELRSLETLDLSDNNFS 349

Query:   152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCA 211
             G IP C+GN   +L  L+LR+N   G +P+                +LVG +PRSL   +
Sbjct:   350 GLIPRCMGNLKSNLSHLNLRQNNLSGGLPKHI--FEILRSLDVGHNQLVGKLPRSLRFFS 407

Query:   212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
              L+VL++ +N++ DTFP WL +L +LQVL+LRSN F+G +  +EA   F KLRI+D+S+N
Sbjct:   408 TLEVLNVESNRINDTFPFWLTSLPKLQVLVLRSNAFHGPI--HEAS--FLKLRIIDISHN 463

Query:   272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
             +F G+LP+ +F    AM+ +G   D + + YMG  YY+DS+ L+ K  E +L++ILTI+T
Sbjct:   464 HFNGTLPSDYFVKWSAMSSLGTDEDRSNANYMGSVYYQDSMVLMNKGVESELIRILTIYT 523

Query:   332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGV 391
              +D S N F GEIP+ +G L  L +LNLS N  +G+IP                N L G 
Sbjct:   524 ALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQNKLYGE 583

Query:   392 IPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPP 451
             IP+E+  L+FL+ +N S N+L G +P G QF T    S+  NLGL G  L ++C +   P
Sbjct:   584 IPQEIGNLSFLSCMNFSHNQLAGLVPGGQQFLTQPCSSFEDNLGLFGSTLEEDCRDIHTP 643

Query:   452 ---QXXXXXXXXXXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNH 508
                Q                W    +G++ G V G+ +GYIL+    P+W +      N 
Sbjct:   644 ASHQQYKTPETEEEDEEVISWIAAAIGFIPGIVLGLTIGYILVFY-KPEWFIKTFGRNNC 702

Query:   509 RK 510
             R+
Sbjct:   703 RR 704

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 165/426 (38%), Positives = 234/426 (54%)

Query:    94 NLEYLDLRSNLLQGPVPAPSSNMRVFLIS-NNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             +++ LD   N + G  P P     ++L + NN F G IP  ICN S++ +LDLS N  +G
Sbjct:   359 SVQLLDFAYNSMTGAFPTPPLGS-IYLSAWNNSFTGNIPLSICNRSSLIVLDLSYNKFTG 417

Query:   153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCAN 212
              IP+C+ N    L+V++LRKN   G+IP+ F               L G +P+SLLNC++
Sbjct:   418 PIPQCLSN----LKVVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSLLNCSS 473

Query:   213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE-ADYYFSKLRILDLSNN 271
             L+ L + NN+++DTFP WL  L  L VL LRSN+F+GHL   +     F +LRIL+LS+N
Sbjct:   474 LRFLSVDNNRIEDTFPFWLKALPNLHVLTLRSNRFFGHLSPPDRGPLAFPELRILELSDN 533

Query:   272 NFTGSLPAMFFKNMKAMTD-IGEAADENKSKYMGETY-YEDSVTLIIKRQEVKLMKILTI 329
             +FTGSLP  FF N KA +  I E        Y    Y YED++ L  K   ++  K+LT 
Sbjct:   534 SFTGSLPPNFFVNWKASSPKINEDGRIYMGDYKNAYYIYEDTMDLQYKGLFMEQGKVLTF 593

Query:   330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLD 389
             ++TID S N   G+IPE +G L  L  LNLS N  +G+IP                N L 
Sbjct:   594 YSTIDFSGNKLEGQIPESIGLLKELIALNLSNNAFTGHIPMSLANVTELESLDLSRNQLS 653

Query:   390 GVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDE 449
             G IPREL  L+FLA ++++ N+L+G IP+G QF+  +  S+ GN+GLCG PL  +C    
Sbjct:   654 GNIPRELGSLSFLAYISVAHNQLKGEIPQGPQFSGQAESSFEGNVGLCGLPLQGSCVAP- 712

Query:   450 PPQXXXXXXXXXXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQW---IMGIVDGK 506
             P +                WK V  GY  G + G+++ +++ S   P+W   I+G   GK
Sbjct:   713 PTKYPKEEDEEEEEDEVIEWKAVFFGYWPGLLLGLVMAHVIASF-KPKWFVKILGPAKGK 771

Query:   507 NHRKVR 512
                 VR
Sbjct:   772 QVDPVR 777

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 157/397 (39%), Positives = 230/397 (57%)

Query:   122 SNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE 181
             SNN F G+IP  IC   ++  LDLS N+ +G+IP C+     +L VL+LR+N   G +P+
Sbjct:   553 SNNNFTGKIPSFICGLRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPK 612

Query:   182 TFPKXXXXXXXXXXXXELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLI 241
                +             LVG +PRSL+  +NL+VL++ +N++ DTFP WL +L +LQVL+
Sbjct:   613 HIFESLRSLDVGHNL--LVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLV 670

Query:   242 LRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSK 301
             LRSN F+G +  +EA   F +LRI+D+S+N+F G+LP  +F    AM+ +G+  D++  K
Sbjct:   671 LRSNAFHGPI--HEAT--FPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEK 726

Query:   302 YMGE-TYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLS 360
             YMG   YY+DS+ L+ K   ++L++ILTI+T +D S N F GEIP+ +G L  L +LNLS
Sbjct:   727 YMGSGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLS 786

Query:   361 QNILSGNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
              N   G+IP                N L G IP+EL  L+FLA +N S N+L G +P G 
Sbjct:   787 NNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGT 846

Query:   421 QFATFSSDSYGGNLGLCGFPLSKNCSNDEPP--QXXXXXXXXXXXXTGFGWKVVLMGYVC 478
             QF   +  ++  NLGL G  L + C +   P  Q                W    +G++ 
Sbjct:   847 QFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEEDEEEISWIAAAIGFIP 906

Query:   479 GTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVRRQN 515
             G VFG+ +GYIL+S   P+W M    G+N+R  RR+N
Sbjct:   907 GIVFGLTIGYILVSY-KPEWFMNPF-GRNNR--RRRN 939

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 160/416 (38%), Positives = 231/416 (55%)

Query:   100 LRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIG 159
             L++N   G V   S+N R    SNN F G+IP  IC   ++ +LDLS N  +G+IP CI 
Sbjct:   409 LQNNGFSGSVTI-SNNTR----SNNNFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIA 463

Query:   160 NFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCANLQVLDLG 219
             N S +L VL+L KN   G+IPE                +L G +PRSL+  ++L+VL++ 
Sbjct:   464 NLS-TLEVLNLGKNHLSGSIPENI--STSVKSIDIGHNQLAGKLPRSLVRISSLEVLNVE 520

Query:   220 NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPA 279
             +NK+ DTFP WL ++++LQVL+LRSN F+G +        FSKLRI+D+S N+F G+LP 
Sbjct:   521 SNKINDTFPFWLDSMQQLQVLVLRSNAFHGSINQNG----FSKLRIIDISGNHFNGTLPL 576

Query:   280 MFFKNMKAMTDIGEAADENK-SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKN 338
              FF N  AM  +G+  D+   + YM   YY DS+ ++IK   +++++IL  FTTID S N
Sbjct:   577 DFFVNWTAMFSLGKIEDQYMGTNYMRTNYYSDSIVVMIKGIALEMVRILNTFTTIDFSGN 636

Query:   339 SFHGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTR 398
              F GEIP  +G L  L +LNLS N  +G+IP                N L G IP EL +
Sbjct:   637 KFEGEIPRSVGLLKELHVLNLSNNGFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGK 696

Query:   399 LTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSN--DEPPQXXXX 456
             L++LA +N S+N+  G +P G QF T    S+  N  L G  L + C +   + PQ    
Sbjct:   697 LSYLAYMNFSQNQFVGLVPGGTQFQTQPCSSFADNPRLFGLSLERVCVDIHKKTPQQSEM 756

Query:   457 XXXXXXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDGKNHRKVR 512
                         W    +G + G   G+ +GYIL+S   P+W+M    G+N R+++
Sbjct:   757 PEPEEDEEEVMNWTAAAIGSIPGISIGLTMGYILVSY-KPEWLMN--SGRNKRRIK 809

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 157/425 (36%), Positives = 230/425 (54%)

Query:    94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
             ++  L L SN  +G +P+   ++  F   +N F GEIP  IC  +++ +LDL+ N+L G 
Sbjct:   252 SVRILLLESNNFEGALPSLPHSINAFSAGHNNFTGEIPLSICTRTSLGVLDLNYNNLIGP 311

Query:   154 IPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCANL 213
             + +C+ N +     ++LRKN   GTIPETF               L G +PRSLLNC++L
Sbjct:   312 VSQCLSNVT----FVNLRKNNLEGTIPETFIVGSSIRTLDVGYNRLTGKLPRSLLNCSSL 367

Query:   214 QVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRD-YEADYYFSKLRILDLSNNN 272
             + L + NN++KDTFP WL  L +LQVL L SNKFYG +   ++    F +LRIL++S+N 
Sbjct:   368 EFLSVDNNRIKDTFPFWLKALPKLQVLTLSSNKFYGPISPPHQGPLGFPELRILEISDNK 427

Query:   273 FTGSLPAMFFKNMKA----MTD-IGEAADENKSKYMGETY-YEDSVTLIIKRQEVKLMKI 326
             FTGSL + +F+N KA    M + +G      K+ Y    Y + D + L  K   ++  ++
Sbjct:   428 FTGSLSSRYFENWKASSAMMNEYVGLYMVYEKNPYGVVVYTFLDRIDLKYKGLNMEQARV 487

Query:   327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXXXXXXXXXXXXXXXXN 386
             LT ++ ID S+N   G IPE +G L +L  LNLS N  +G+IP                N
Sbjct:   488 LTSYSAIDFSRNLLEGNIPESIGLLKALIALNLSNNAFTGHIPQSLANLKELQSLDMSRN 547

Query:   387 VLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNC- 445
              L G IP  L +L+FLA +++S N+L+G IP+G Q       S+ GN+GLCG PL + C 
Sbjct:   548 QLSGTIPNGLKQLSFLAYISVSHNQLKGEIPQGTQITGQLKSSFEGNVGLCGLPLEERCF 607

Query:   446 SNDEPPQXXXXXXXXXXXXTGFGWKVVLMGYVCGTVFGMILGYILLSTGNPQWIMGIVDG 505
              N   P                 WK V MGY  G + G  + Y++ S   P+W+  I+ G
Sbjct:   608 DNSASPTQHHKQDEEEEEEQVLHWKAVAMGYGPGLLVGFAIAYVIASY-KPEWLTKII-G 665

Query:   506 KNHRK 510
              N R+
Sbjct:   666 PNKRR 670

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032000001 SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (539 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	523
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-35
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  180 bits (458), Expect = 1e-48
 Identities = 124/371 (33%), Positives = 186/371 (50%), Gaps = 28/371 (7%)

Query: 82  PKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFL---ISNNKFIGEIPRLICNTS 138
           P  LGN     KNL+YL L  N L GP+P    +++  +   +S+N   GEIP L+    
Sbjct: 253 PSSLGN----LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE 198
            +EIL L +N+ +G IP  + +  + L+VL L  N+F G IP+   K NNLT L+ + N 
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPR-LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 199 LVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY 258
           L G +P  L +  NL  L L +N ++   P  LG  R L+ + L+ N F G L       
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE---- 423

Query: 259 YFSKLRI---LDLSNNNFTGSL-------PAMFFKNMKAMTDIGEAADENKSKYMGE-TY 307
            F+KL +   LD+SNNN  G +       P++   ++      G   D   SK +     
Sbjct: 424 -FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
             +  +  + R+   L +++ +     LS+N   GEIP+ +     L  L+LS N LSG 
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQL----KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Query: 368 IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
           IP+S  ++  L  LDLS N L G IP+ L  +  L  +N+S N L G +P    F   ++
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINA 598

Query: 428 DSYGGNLGLCG 438
            +  GN+ LCG
Sbjct: 599 SAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  161 bits (410), Expect = 2e-42
 Identities = 119/335 (35%), Positives = 170/335 (50%), Gaps = 54/335 (16%)

Query: 89  KLPWKNLEYLDLRSNLLQGPVP----APSSNMRVFLISNNKFIGEIPRLICNTSTIEILD 144
           +LP+  ++ ++L +N L GP+P      SS++R   +SNN F G IPR   +   +E LD
Sbjct: 91  RLPY--IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146

Query: 145 LSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP 204
           LSNN LSG IP  IG+FS SL+VLDL                         GN LVG +P
Sbjct: 147 LSNNMLSGEIPNDIGSFS-SLKVLDL------------------------GGNVLVGKIP 181

Query: 205 RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR 264
            SL N  +L+ L L +N++    P  LG ++ L+ + L  N   G +  YE     + L 
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI-PYEIGG-LTSLN 239

Query: 265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM 324
            LDL  NN TG +P+                +    +Y+    Y++ ++  I      L 
Sbjct: 240 HLDLVYNNLTGPIPSSL-------------GNLKNLQYL--FLYQNKLSGPIPPSIFSLQ 284

Query: 325 KILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLS 384
           K++++    DLS NS  GEIPEL+ +L +L +L+L  N  +G IP +L  L  L+ L L 
Sbjct: 285 KLISL----DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           SN   G IP+ L +   L VL+LS N L G IPEG
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  140 bits (355), Expect = 2e-35
 Identities = 103/314 (32%), Positives = 141/314 (44%), Gaps = 47/314 (14%)

Query: 106 QGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSL 165
           QG     SS +    +S     G+I   I     I+ ++LSNN LSG IP+ I   S SL
Sbjct: 61  QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120

Query: 166 RVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD 225
           R L+L  N F G+IP       NL TL+ + N L G +P  + + ++L+VLDLG N +  
Sbjct: 121 RYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 226 TFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNM 285
             P+ L  L  L+ L L SN+  G +           L+ + L  NN +G +P       
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ--MKSLKWIYLGYNNLSGEIP------- 229

Query: 286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP 345
               +IG                                  LT    +DL  N+  G IP
Sbjct: 230 ---YEIGG---------------------------------LTSLNHLDLVYNNLTGPIP 253

Query: 346 ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL 405
             +G L +L+ L L QN LSG IP S+  L  L SLDLS N L G IP  + +L  L +L
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 406 NLSRNKLEGRIPEG 419
           +L  N   G+IP  
Sbjct: 314 HLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 2/115 (1%)

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           + L      G IP  + KL  L+ +NLS N + GNIP SLG +T LE LDLS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 393 PRELTRLTFLAVLNLSRNKLEGRIPE--GNQFATFSSDSYGGNLGLCGFPLSKNC 445
           P  L +LT L +LNL+ N L GR+P   G +    +S ++  N GLCG P  + C
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 8e-13
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 121 ISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIP 180
           + N    G IP  I     ++ ++LS NS+ G IP  +G+ + SL VLDL  N F+G+IP
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIP 483

Query: 181 ETFPKGNNLTTLNFNGNELVGSVPRSL 207
           E+  +  +L  LN NGN L G VP +L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG 373
           +T    +DLS NSF+G IPE +G+L SLR+LNL+ N LSG +P++LG
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 29/133 (21%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP-------SSL----------- 372
            +IDLS  +  G+I   + +L  ++ +NLS N LSG IP       SSL           
Sbjct: 72  VSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131

Query: 373 -----GDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE--GN----Q 421
                G + +LE+LDLS+N+L G IP ++   + L VL+L  N L G+IP    N    +
Sbjct: 132 GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 422 FATFSSDSYGGNL 434
           F T +S+   G +
Sbjct: 192 FLTLASNQLVGQI 204

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 29/84 (34%), Positives = 43/84 (51%)

Query: 168 LDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTF 227
           L L      G IP    K  +L ++N +GN + G++P SL +  +L+VLDL  N    + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 228 PHWLGTLRELQVLILRSNKFYGHL 251
           P  LG L  L++L L  N   G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL 199
           I+ L L N  L G IP  I      L+ ++L  N   G IP +     +L  L+ + N  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 200 VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLG 232
            GS+P SL    +L++L+L  N +    P  LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK 222
           +L+ LDL  NR        F    NL  L+ +GN L    P +     +L+ LDL  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 75/291 (25%), Positives = 105/291 (36%), Gaps = 32/291 (10%)

Query: 136 NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFN 195
           N   +  LDL+ N L   I E +     +L  LDL  N      P      +NL  L+ +
Sbjct: 91  NLLPLPSLDLNLNRLRSNISELLEL--TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS 148

Query: 196 GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255
            N++  S+P  L N  NL+ LDL  N + D     L  L  L  L L  NK    + D  
Sbjct: 149 DNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNK----ISDLP 202

Query: 256 ADYYF-SKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTL 314
            +    S L  LDLSNN+    L ++           G     NK         ED    
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLS----NLKNLSGLELSNNKL--------EDLPES 250

Query: 315 IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD 374
           I     ++         T+DLS N         +G L +LR L+LS N LS  +P     
Sbjct: 251 IGNLSNLE---------TLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLIALL 299

Query: 375 LTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATF 425
           L  LE L      L  +  +  + L    +L+         +         
Sbjct: 300 LLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNL 350

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           +L+ L+LS N L+     +   L +L+ LDLS N L  + P   + L  L  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
           NL +L+ + N L      +     NL+VLDL  N +    P     L  L+ L L  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNM---RVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
           ++L+ ++L  N ++G +P    ++    V  +S N F G IP  +   +++ IL+L+ NS
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 150 LSGTIPECIG 159
           LSG +P  +G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD--YYFSKLRILDLS 269
           NL+ LDL NN++          L  L+VL L  N     L     +       LR LDLS
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN----LTSISPEAFSGLPSLRSLDLS 56

Query: 270 NNNF 273
            NN 
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 51/212 (24%), Positives = 77/212 (36%), Gaps = 33/212 (15%)

Query: 94  NLEYLDLRSNLLQGPVPAP------SSNMRVFLISNNKFIGEIPRLIC-----NTSTIEI 142
            L+ LDL  N L             SS+++   ++NN       RL+          +E 
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 143 LDLSNNSLSGTIPECIGN---FSKSLRVLDLRKNRFHG----TIPETFPKGNNLTTLNFN 195
           L L  N L G   E +      ++ L+ L+L  N         + E      NL  L+ N
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 196 GNEL----VGSVPRSLLNCANLQVLDLGNNKMKDT-----FPHWLGTLRELQVLILRSNK 246
            N L      ++  +L +  +L+VL+LG+N + D          L     L  L L  N 
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

Query: 247 F----YGHLRDYEADYYFSKLRILDLSNNNFT 274
                   L +  A+     L  LDL  N F 
Sbjct: 262 ITDDGAKDLAEVLAE--KESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL 388
            ++DLS N            L +L++L+LS N L+   P +   L  L SLDLS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL 199
           ++ LDLSNN L+            +L+VLDL  N      PE F    +L +L+ +GN L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLP-NLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	523
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.67
PLN03150	623	hypothetical protein; Provisional	99.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.31
PLN03150	623	hypothetical protein; Provisional	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.52
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.45
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
PRK15386	426	type III secretion protein GogB; Provisional	98.01
PRK15386	426	type III secretion protein GogB; Provisional	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
KOG4341	483	consensus F-box protein containing LRR [General fu	97.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.8
KOG4341	483	consensus F-box protein containing LRR [General fu	96.8
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.21
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.32
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.03
KOG4308	478	consensus LRR-containing protein [Function unknown	94.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.05
KOG4308	478	consensus LRR-containing protein [Function unknown	93.79
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.61
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.07
smart00370	26	LRR Leucine-rich repeats, outliers.	92.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.92
smart00370	26	LRR Leucine-rich repeats, outliers.	91.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.53
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.12
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.34
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	81.23

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-41  Score=375.42  Aligned_cols=399  Identities=30%  Similarity=0.416  Sum_probs=277.8

Q ss_pred             hhHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhcc--ccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC-
Q 009858           36 ISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAE--FEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP-  112 (523)
Q Consensus        36 l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-  112 (523)
                      ++..+..+.+|++|+++.|.+.+...   ..+.....+..  +..+.+....+..+..+++|++|++++|.+++..|.. 
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  256 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIP---RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL  256 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCC---hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence            34556677888999999887654322   22222233332  2333333344444556778888888888877766654 


Q ss_pred             --CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC
Q 009858          113 --SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT  190 (523)
Q Consensus       113 --~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (523)
                        +++|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..+..+. +|++|++++|.+.+..|..+..+++|+
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~  335 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQ  335 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCC
Confidence              67777788887777777777777777777777777777777777777776 677777777777777777777777777


Q ss_pred             EEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858          191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN  270 (523)
Q Consensus       191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  270 (523)
                      .|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|.+.+..|..+  ..+++|+.|++++
T Consensus       336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~  413 (968)
T PLN00113        336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQD  413 (968)
T ss_pred             EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcC
Confidence            77777777776777777777777777777777666666666555555555555555555444433  3344555555555


Q ss_pred             ccCCCCCchH-----------------------HHhccccccccccccccccccccCccccccceEE-----EecchhHH
Q 009858          271 NNFTGSLPAM-----------------------FFKNMKAMTDIGEAADENKSKYMGETYYEDSVTL-----IIKRQEVK  322 (523)
Q Consensus       271 n~l~~~~p~~-----------------------~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  322 (523)
                      |.+++.+|..                       .+..+++|+.+++.++.................+     .+......
T Consensus       414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~  493 (968)
T PLN00113        414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR  493 (968)
T ss_pred             CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh
Confidence            5544444422                       1233444444444443321110000000001111     11222334


Q ss_pred             HHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCC
Q 009858          323 LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFL  402 (523)
Q Consensus       323 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  402 (523)
                      .+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|
T Consensus       494 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  573 (968)
T PLN00113        494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL  573 (968)
T ss_pred             hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 009858          403 AVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       403 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      +.|++++|+++|.+|...++.++...++.||+.+|+.+
T Consensus       574 ~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        574 VQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-38  Score=355.19  Aligned_cols=397  Identities=27%  Similarity=0.367  Sum_probs=323.4

Q ss_pred             hhHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhcc--ccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC-
Q 009858           36 ISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAE--FEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP-  112 (523)
Q Consensus        36 l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-  112 (523)
                      +...+..+.+|++|+++.|.+.+..+.   .+.+...+..  +..+.+...++..+..+++|++|++++|.+++.+|.. 
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  232 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPN---SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI  232 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCCh---hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence            345566778999999999987653322   2333333333  3334444445555677899999999999999888865 


Q ss_pred             --CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC
Q 009858          113 --SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT  190 (523)
Q Consensus       113 --~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (523)
                        +++|++|++++|.+.+..|..|.++++|++|++++|.+++.+|..+..+. +|++|++++|.+.+..|..+.++++|+
T Consensus       233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~  311 (968)
T PLN00113        233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQNLE  311 (968)
T ss_pred             hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCCeeccCCChhHcCCCCCc
Confidence              89999999999999999999999999999999999999999999999998 899999999999999999999999999


Q ss_pred             EEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858          191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN  270 (523)
Q Consensus       191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  270 (523)
                      +|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+  ..+++|+.|++++
T Consensus       312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~  389 (968)
T PLN00113        312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFS  389 (968)
T ss_pred             EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999988888766  5688999999999


Q ss_pred             ccCCCCCchHHHhccccccccccccccccccccC------c--------cc-----------cccceEEEec-----chh
Q 009858          271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG------E--------TY-----------YEDSVTLIIK-----RQE  320 (523)
Q Consensus       271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~------~--------~~-----------~~~~~~~~~~-----~~~  320 (523)
                      |.+.+.+|.. +..+++|+.+++..+........      .        ..           ......+...     ...
T Consensus       390 n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~  468 (968)
T PLN00113        390 NSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL  468 (968)
T ss_pred             CEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence            9999888854 67888999888877654321100      0        00           0000000000     000


Q ss_pred             HHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCC
Q 009858          321 VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT  400 (523)
Q Consensus       321 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  400 (523)
                      ... ...++|+.|++++|.+++..|..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..++
T Consensus       469 p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  547 (968)
T PLN00113        469 PDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP  547 (968)
T ss_pred             Ccc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence            111 1246788999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858          401 FLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       401 ~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      +|+.|++++|++++.+|.. ..+..+...++.+|...+..|
T Consensus       548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            9999999999999999974 345667777788887665444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-35  Score=278.62  Aligned_cols=344  Identities=21%  Similarity=0.239  Sum_probs=232.8

Q ss_pred             HHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCC
Q 009858           40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNM  116 (523)
Q Consensus        40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L  116 (523)
                      +..+++|+++++..+.+..++...  .......-.++..+.++.+-+..+.-++.|++||||.|.|+.+....   -.++
T Consensus        98 f~nl~nLq~v~l~~N~Lt~IP~f~--~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni  175 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELTRIPRFG--HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI  175 (873)
T ss_pred             HhcCCcceeeeeccchhhhccccc--ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence            455667777777777665543322  12223445566667777777776777788888888888887655444   4578


Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhh-cccCCcEEEccCCcccccCCCCCCCCCCCCEEECc
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGN-FSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFN  195 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  195 (523)
                      ++|+|++|+++......|.++.+|.+|.|+.|+++ .+|...++ ++ +|+.|+|.+|+|.-.---.|.+|++|+.|.|.
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            88889888888888888888888888888888888 67766555 66 78889998888884435578888888888888


Q ss_pred             CCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCC
Q 009858          196 GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTG  275 (523)
Q Consensus       196 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  275 (523)
                      .|++.....+.|-.|.++++|+|..|++...-..++.++++|+.|+++.|.+...-+...  ...++|++|+|++|.++ 
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~-  330 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRIT-  330 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccc-
Confidence            888887777788888899999999998887777888888999999999988876666655  55788999999999888 


Q ss_pred             CCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcc---hhhcCcc
Q 009858          276 SLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP---ELMGKLH  352 (523)
Q Consensus       276 ~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~  352 (523)
                      .+++..|..+..|+.|.++.+.                  +.......|..+.+|+.|||++|.+...+.   ..|.+++
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Ns------------------i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~  392 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNS------------------IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP  392 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccc------------------hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence            6776666665555555554332                  111222333445555555555555543332   2344455


Q ss_pred             cCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858          353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR  409 (523)
Q Consensus       353 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  409 (523)
                      +|+.|.|.+|++..+...+|.++++|++|||.+|.|..+.|++|..+ .|++|.+..
T Consensus       393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            55555555555553333455555555555555555555555555554 455554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=1e-33  Score=271.23  Aligned_cols=369  Identities=21%  Similarity=0.207  Sum_probs=245.1

Q ss_pred             hhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccC
Q 009858           70 YASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN  147 (523)
Q Consensus        70 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  147 (523)
                      ++...++..+.+.++-...|.++++|+.+++..|.++.++...  ..+|+.|+|.+|.++....+.+..++.|+.||||.
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            3444455555554444444555666666666666666443322  55566666666666666666666666666666666


Q ss_pred             CcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCc
Q 009858          148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTF  227 (523)
Q Consensus       148 n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  227 (523)
                      |.|+ .+|..-+.-..++++|+|++|+|+......|..+.+|.+|.|+.|+++...+..|..+++|+.|+|..|++.-.-
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            6666 444332222225666666666666666666666666666666666666555556666666666666666665332


Q ss_pred             hHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCc--
Q 009858          228 PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE--  305 (523)
Q Consensus       228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~--  305 (523)
                      --.|.++++|+.|.+..|.+...-...+  +.+.++++|+|+.|++. .+...++-+++.|+.|+++.+....-....  
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhh
Confidence            3445566666666666666654444444  66777777777777776 555566667777777777766543322111  


Q ss_pred             ----cccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCC---ccccCCCCC
Q 009858          306 ----TYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP---SSLGDLTDL  378 (523)
Q Consensus       306 ----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L  378 (523)
                          -.........+.......+..+..|++|+|++|.+.......|..+.+|+.|+|++|.+...+.   ..|.++++|
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L  394 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL  394 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence                1112223334555666677778888999999998886667788889999999999998876544   357789999


Q ss_pred             CEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCCCC
Q 009858          379 ESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLS  442 (523)
Q Consensus       379 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~~~  442 (523)
                      +.|+|.+|++..+...+|.+++.|++|||.+|.+...-|....-..++.+.+..-..+|+|.+.
T Consensus       395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence            9999999999988888999999999999999999877676533335666667777789988654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=1.4e-28  Score=237.74  Aligned_cols=326  Identities=28%  Similarity=0.314  Sum_probs=233.5

Q ss_pred             hhhHHHHHHHhhhhhcCCcccccc----ccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCC
Q 009858           35 SISSFVYVLLFLELLAGSTCVVHG----LQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVP  110 (523)
Q Consensus        35 ~l~~~~~~~~~l~~l~~~~c~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  110 (523)
                      .++.-++.+.+|+.|+++.+.+..    +++.|. ..+-.+.-+.+..+++|..    +..+..|+.||||+|++...+.
T Consensus        46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~-LRsv~~R~N~LKnsGiP~d----iF~l~dLt~lDLShNqL~EvP~  120 (1255)
T KOG0444|consen   46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPR-LRSVIVRDNNLKNSGIPTD----IFRLKDLTILDLSHNQLREVPT  120 (1255)
T ss_pred             hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchh-hHHHhhhccccccCCCCch----hcccccceeeecchhhhhhcch
Confidence            345567778888888888887543    233331 0011122234444445433    3357888888888888876554


Q ss_pred             CC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCC
Q 009858          111 AP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNN  188 (523)
Q Consensus       111 ~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~  188 (523)
                      ..  .+++-+|+|++|++..+.-..|.+++.|-+||||+|++. .+|..+..+. +|++|+|++|.+.-..-..+..+++
T Consensus       121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmts  198 (1255)
T KOG0444|consen  121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTS  198 (1255)
T ss_pred             hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchh
Confidence            43  678888888888887555566778888888888888887 8888888887 7888888888776443445556777


Q ss_pred             CCEEECcCCCCC-CCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEe
Q 009858          189 LTTLNFNGNELV-GSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILD  267 (523)
Q Consensus       189 L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  267 (523)
                      |++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+..+++|+.|++++|.++......   ....+|+.|+
T Consensus       199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLN  274 (1255)
T KOG0444|consen  199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLN  274 (1255)
T ss_pred             hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhc
Confidence            888888876543 467778888888888888888887 68888888888888888888876433221   3356788888


Q ss_pred             ccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCc-Ccch
Q 009858          268 LSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG-EIPE  346 (523)
Q Consensus       268 l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~  346 (523)
                      +|.|+++ .+|... .                                          .++.|+.|.+.+|+++- -+|.
T Consensus       275 lSrNQLt-~LP~av-c------------------------------------------KL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  275 LSRNQLT-VLPDAV-C------------------------------------------KLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             cccchhc-cchHHH-h------------------------------------------hhHHHHHHHhccCcccccCCcc
Confidence            8888887 666542 2                                          26777777777777653 3677


Q ss_pred             hhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCC
Q 009858          347 LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIP  417 (523)
Q Consensus       347 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  417 (523)
                      .++.+.+|+.+..++|.+. .+|..++.+..|+.|.|++|++. .+|+++.-++.|+.||+.+|+-.-..|
T Consensus       311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            7888888888888888877 78888888888888888888887 667778888888888888887653333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=1.2e-29  Score=245.09  Aligned_cols=323  Identities=25%  Similarity=0.329  Sum_probs=235.2

Q ss_pred             CCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCC-cCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcE
Q 009858           91 PWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIG-EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRV  167 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~  167 (523)
                      .+.+|+.|.+++|++....-..  ++.||.+++.+|++.. -+|..+..+..|..||||+|++. ..|..+.... ++-+
T Consensus        53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AK-n~iV  130 (1255)
T KOG0444|consen   53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAK-NSIV  130 (1255)
T ss_pred             HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhc-CcEE
Confidence            3567777777777776544433  7777777777777643 35556667777777777777777 7777777665 6777


Q ss_pred             EEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          168 LDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      |+|++|+|..+....|.+++.|-.|||++|++. .+|..+..+.+|++|+|++|.+...--..+-.|++|++|.+++.+-
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence            777777777444445667777777777777775 6666777777777777777776543333344566677777776543


Q ss_pred             c-CcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHh
Q 009858          248 Y-GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI  326 (523)
Q Consensus       248 ~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (523)
                      + ..+|...  ..+.+|+.+|+|.|++. .+|+ +.-++.+|+.|+++++........                   ...
T Consensus       210 Tl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~~~-------------------~~~  266 (1255)
T KOG0444|consen  210 TLDNIPTSL--DDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELNMT-------------------EGE  266 (1255)
T ss_pred             hhhcCCCch--hhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceeeeecc-------------------HHH
Confidence            2 2233333  45677777777777776 5564 355677777777776654432221                   122


Q ss_pred             hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccc-cCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858          327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG-NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL  405 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  405 (523)
                      ..+|++|++|.|+++ .+|..+..++.|+.|.+.+|+++- -+|..++.+..|+.+..++|.+. ..|+.+..++.|+.|
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence            578999999999999 999999999999999999998863 58899999999999999999998 889999999999999


Q ss_pred             ECCCCcCcccCCCCCC-CCcccCCccCCCCCCCCCCCC
Q 009858          406 NLSRNKLEGRIPEGNQ-FATFSSDSYGGNLGLCGFPLS  442 (523)
Q Consensus       406 ~Ls~N~l~~~~p~~~~-~~~~~~~~~~gn~~lc~~~~~  442 (523)
                      .|+.|.+- .+|++.+ +..+..++...||.+--.|-+
T Consensus       345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             ccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence            99999998 6787654 356777888899888765543

>PLN03210 Resistant to P

Probab=99.92  E-value=1.5e-24  Score=242.52  Aligned_cols=398  Identities=15%  Similarity=0.231  Sum_probs=250.4

Q ss_pred             ccccchhhHhhhhhhhhcccchhhHHHHhhhhhHHHHHHHhhhhhcCCcccccc---ccCCCccc-hhhhhhhccccccC
Q 009858            5 VMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHG---LQSHPRNT-LKDYASAAEFEASD   80 (523)
Q Consensus         5 ~~eLi~r~~~q~~~~~~~~~~~~~~hdl~~~l~~~~~~~~~l~~l~~~~c~~~~---~~~~~~~~-~~~~~~~~~l~~~~   80 (523)
                      +++|+.+||++...  .   .++ |||+++++|..+..-..-.  -....++..   +..+.... -........+..+.
T Consensus       472 l~~L~~ksLi~~~~--~---~~~-MHdLl~~~~r~i~~~~~~~--~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~  543 (1153)
T PLN03210        472 LKNLVDKSLIHVRE--D---IVE-MHSLLQEMGKEIVRAQSNE--PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE  543 (1153)
T ss_pred             hHHHHhcCCEEEcC--C---eEE-hhhHHHHHHHHHHHhhcCC--CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence            67789999987632  1   244 9999999999887332100  000000000   00000000 00000000111111


Q ss_pred             C--CcccCCCCCCCCCccEEEccCCCC------ccCCCCC----CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCC
Q 009858           81 G--PKLLGNKKLPWKNLEYLDLRSNLL------QGPVPAP----SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN  148 (523)
Q Consensus        81 ~--~~~~~~~~~~~~~L~~L~L~~n~l------~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  148 (523)
                      +  ..+...+|.++++|+.|.+..+..      ...+|..    ..+|+.|.+.++.+. .+|..| ...+|+.|++++|
T Consensus       544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s  621 (1153)
T PLN03210        544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGS  621 (1153)
T ss_pred             cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCc
Confidence            1  123345688899999999976542      2233433    467999999999886 667666 5789999999999


Q ss_pred             cCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch
Q 009858          149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP  228 (523)
Q Consensus       149 ~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  228 (523)
                      .+. .+|..+..+. +|++|+|+++.....+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|...+.+|
T Consensus       622 ~l~-~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        622 KLE-KLWDGVHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             ccc-ccccccccCC-CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence            998 8888888887 899999998865556664 7889999999999988777899999999999999999987666777


Q ss_pred             HhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcccc
Q 009858          229 HWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYY  308 (523)
Q Consensus       229 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  308 (523)
                      ..+ ++++|+.|++++|...+..|..     .++|++|++++|.+. .+|...  .+++|..|.+..+.....+..    
T Consensus       699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~----  765 (1153)
T PLN03210        699 TGI-NLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWER----  765 (1153)
T ss_pred             CcC-CCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCccc-cccccc--cccccccccccccchhhcccc----
Confidence            655 7899999999999765555532     468999999999986 677543  466677666654321110000    


Q ss_pred             ccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCC------------
Q 009858          309 EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT------------  376 (523)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~------------  376 (523)
                             ...........+++|+.|+|++|...+.+|.++.++++|+.|+|++|...+.+|..+ .++            
T Consensus       766 -------~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        766 -------VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR  837 (1153)
T ss_pred             -------ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence                   000000011123556666666665555566666666666666666654333444432 333            


Q ss_pred             ---------CCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCC-CCCCCcccCCccCCCCCCC
Q 009858          377 ---------DLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE-GNQFATFSSDSYGGNLGLC  437 (523)
Q Consensus       377 ---------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~gn~~lc  437 (523)
                               +|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|. ...+..+....+.+++.+.
T Consensus       838 L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        838 LRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             cccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence                     4555566666665 4566777788888888887543334443 3445556666666665554

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=1.2e-27  Score=220.07  Aligned_cols=390  Identities=24%  Similarity=0.313  Sum_probs=250.2

Q ss_pred             HHHHhhhhhHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhccccc--cCCCcccCCCCCCCCCccEEEccCCCCc
Q 009858           29 VKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEA--SDGPKLLGNKKLPWKNLEYLDLRSNLLQ  106 (523)
Q Consensus        29 ~hdl~~~l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~L~~L~L~~n~l~  106 (523)
                      .|.-+..+...+..+..++.++.+......+.+    ...++....++..  +.+...+ ..+..+.++..|++.+|++.
T Consensus        99 s~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~----~i~~~~~l~dl~~~~N~i~slp-~~~~~~~~l~~l~~~~n~l~  173 (565)
T KOG0472|consen   99 SHNKLSELPEQIGSLISLVKLDCSSNELKELPD----SIGRLLDLEDLDATNNQISSLP-EDMVNLSKLSKLDLEGNKLK  173 (565)
T ss_pred             ccchHhhccHHHhhhhhhhhhhccccceeecCc----hHHHHhhhhhhhccccccccCc-hHHHHHHHHHHhhccccchh
Confidence            455567777778888888888877776665443    2233333333322  2233222 23345678888999999988


Q ss_pred             cCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCC-
Q 009858          107 GPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETF-  183 (523)
Q Consensus       107 ~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~-  183 (523)
                      ..+|..  ++.|+.||...|-+. .+|..++.+.+|..|+|..|++. .+| .|..+. .|.+|+++.|++. .+|... 
T Consensus       174 ~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs-~L~Elh~g~N~i~-~lpae~~  248 (565)
T KOG0472|consen  174 ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCS-LLKELHVGENQIE-MLPAEHL  248 (565)
T ss_pred             hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccH-HHHHHHhcccHHH-hhHHHHh
Confidence            777765  888888998888877 67778888999999999999987 788 666776 7889999999888 555544 


Q ss_pred             CCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc-------------
Q 009858          184 PKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH-------------  250 (523)
Q Consensus       184 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-------------  250 (523)
                      ..+.++.+||+..|++. +.|..+..+++|+.||+++|.++ .+|..++++ .|+.|.+.+|++...             
T Consensus       249 ~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vL  325 (565)
T KOG0472|consen  249 KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVL  325 (565)
T ss_pred             cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHH
Confidence            47888899999999887 78888888889999999999888 467788888 888888888865210             


Q ss_pred             ------------------------CCC--ccccccCCCCcEEeccCccCCCCCchHHHhcccc--ccccccccccccccc
Q 009858          251 ------------------------LRD--YEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKA--MTDIGEAADENKSKY  302 (523)
Q Consensus       251 ------------------------~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~--L~~l~~~~~~~~~~~  302 (523)
                                              .+.  +...+.+.+.++|++++-+++ .+|...|..-+.  .+.++++.+......
T Consensus       326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elP  404 (565)
T KOG0472|consen  326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELP  404 (565)
T ss_pred             HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhh
Confidence                                    000  001123457888899888888 888887765442  333444433222111


Q ss_pred             cCcccccc-----ceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCC
Q 009858          303 MGETYYED-----SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD  377 (523)
Q Consensus       303 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  377 (523)
                      -+......     ..............+.+++|..|+|++|-+. .+|..++.+..|+.|+|+.|.+. .+|...-.+..
T Consensus       405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~  482 (565)
T KOG0472|consen  405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT  482 (565)
T ss_pred             hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence            00000000     0000111122233444667777777777766 66777777777777777777665 45554444444


Q ss_pred             CCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCC
Q 009858          378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNL  434 (523)
Q Consensus       378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~  434 (523)
                      |+.+-.++|++....|+.+.++..|..|||.+|.+....|.......+..+...|||
T Consensus       483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             HHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence            444444455555555555666666667777777666444444555556666666665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=8.3e-26  Score=208.10  Aligned_cols=294  Identities=24%  Similarity=0.321  Sum_probs=187.9

Q ss_pred             CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      +.+|..|+|.+|.+...+... +..|.+|.+..|.+.-...+...++.++.+|||.+|+++ +.|+.++-+. +|++||+
T Consensus       205 l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDl  282 (565)
T KOG0472|consen  205 LESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDL  282 (565)
T ss_pred             hhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh-hhhhhcc
Confidence            455555555555554333111 455555555555555222233346777777777777777 7777777776 6777777


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCC--------------------------------------CCc---cccC
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGS--------------------------------------VPR---SLLN  209 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--------------------------------------~~~---~l~~  209 (523)
                      ++|.++ .+|.+++++ +|+.|-+.||.+..+                                      .+.   ....
T Consensus       283 SNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~  360 (565)
T KOG0472|consen  283 SNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA  360 (565)
T ss_pred             cCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence            777777 566677777 777777777765100                                      000   1112


Q ss_pred             CCCCcEEECCCCcCCCCchHhhhcCCC---CCeEEeccccccCcCCCccccccCCCC-cEEeccCccCCCCCchHHHhcc
Q 009858          210 CANLQVLDLGNNKMKDTFPHWLGTLRE---LQVLILRSNKFYGHLRDYEADYYFSKL-RILDLSNNNFTGSLPAMFFKNM  285 (523)
Q Consensus       210 l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~p~~~~~~l  285 (523)
                      +.+.+.|+++.-+++ .+|+....-..   ....+++.|++.+.+....   .+..+ ..+.+++|.+  ..+...++.+
T Consensus       361 ~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~---~lkelvT~l~lsnn~i--sfv~~~l~~l  434 (565)
T KOG0472|consen  361 IITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV---ELKELVTDLVLSNNKI--SFVPLELSQL  434 (565)
T ss_pred             hhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhH---HHHHHHHHHHhhcCcc--ccchHHHHhh
Confidence            344566666666665 34544333333   6677888888764433221   11222 2234444444  2333445666


Q ss_pred             ccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCccc
Q 009858          286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS  365 (523)
Q Consensus       286 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  365 (523)
                      ++++.++++++-...                  .+.+. ..+..|+.|++|.|.+. .+|..+..+..|+.+-.++|++.
T Consensus       435 ~kLt~L~L~NN~Ln~------------------LP~e~-~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~  494 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLND------------------LPEEM-GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG  494 (565)
T ss_pred             hcceeeecccchhhh------------------cchhh-hhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence            666666655442111                  11111 22566999999999999 89999888889999999999998


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCC
Q 009858          366 GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       366 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  418 (523)
                      ...|..+.+|.+|.+|||.+|.+. .+|..++++.+|++|++++|+|.  .|.
T Consensus       495 ~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  495 SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence            666667999999999999999999 67788999999999999999997  454

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.88  E-value=3.1e-24  Score=216.91  Aligned_cols=221  Identities=27%  Similarity=0.361  Sum_probs=142.8

Q ss_pred             CCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccc--------------------cccCCCCcEEeccC
Q 009858          211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEA--------------------DYYFSKLRILDLSN  270 (523)
Q Consensus       211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--------------------~~~l~~L~~L~l~~  270 (523)
                      .+|++++++.|+++ .+|+|++.+.+|+.+.+..|.+.......+.                    ...++.|+.|++..
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            35666777777776 5678888888888888888877432211111                    12366788888888


Q ss_pred             ccCCCCCchHHHhcccc-ccccccccccccccc-cCcccc-----ccceEEEecchhHHHHHhhcccccccCCCCccCcC
Q 009858          271 NNFTGSLPAMFFKNMKA-MTDIGEAADENKSKY-MGETYY-----EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE  343 (523)
Q Consensus       271 n~l~~~~p~~~~~~l~~-L~~l~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  343 (523)
                      |.+. .+|+.++.-+.. +..++.+.+...... .+....     .-..+..........+..+.+|+.|+|++|.+...
T Consensus       320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            8886 777766655544 455544433222111 111000     00111122233344455677888888888888733


Q ss_pred             cchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCccc-CCCCCCC
Q 009858          344 IPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR-IPEGNQF  422 (523)
Q Consensus       344 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~  422 (523)
                      ....+.++..|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|.....
T Consensus       399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~  475 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS  475 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence            3455677888888888888887 67777778888888888888887 455 678889999999999998743 3444444


Q ss_pred             CcccCCccCCCCCC
Q 009858          423 ATFSSDSYGGNLGL  436 (523)
Q Consensus       423 ~~~~~~~~~gn~~l  436 (523)
                      ..++.+++.||.++
T Consensus       476 p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  476 PNLKYLDLSGNTRL  489 (1081)
T ss_pred             cccceeeccCCccc
Confidence            67888888898853

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=7.1e-22  Score=205.82  Aligned_cols=263  Identities=24%  Similarity=0.324  Sum_probs=182.6

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      ..-..|+++.+.++..++...++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|..    +++|+.|++++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeeccC
Confidence            345678888888875444446678888888888774 443   2567888888888887 66643    23788888888


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      |.++ .+|..+   .+|+.|++++|+++ .+|.   .+++|+.|++++|.+.+ +|..   ..+|+.|++++|.+.+ +|
T Consensus       272 N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        272 NPLT-HLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             Cchh-hhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence            8877 444422   46777888888877 4443   24678888888888774 4432   2356777888887754 33


Q ss_pred             CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT  332 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  332 (523)
                      ..     ..+|+.|++++|.++ .+|..    ...|+.|++..+....  ++                    ..+.+|+.
T Consensus       339 ~l-----p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~--LP--------------------~l~~~L~~  386 (788)
T PRK15387        339 TL-----PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS--LP--------------------ALPSGLKE  386 (788)
T ss_pred             cc-----ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc--Cc--------------------ccccccce
Confidence            21     246888888888887 45532    2344444444332111  00                    11357899


Q ss_pred             ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858          333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      |++++|.++ .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+..++.|+.|++++|++
T Consensus       387 LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        387 LIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             EEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence            999999998 45643   367999999999998 46754   357889999999998 6788899999999999999999


Q ss_pred             cccCCC
Q 009858          413 EGRIPE  418 (523)
Q Consensus       413 ~~~~p~  418 (523)
                      ++.+|.
T Consensus       458 s~~~~~  463 (788)
T PRK15387        458 SERTLQ  463 (788)
T ss_pred             CchHHH
Confidence            987665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=4.2e-24  Score=196.64  Aligned_cols=289  Identities=19%  Similarity=0.167  Sum_probs=162.8

Q ss_pred             CCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccC-CcCCccChhh-HhhcccCCcE
Q 009858           93 KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN-NSLSGTIPEC-IGNFSKSLRV  167 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~-l~~l~~~L~~  167 (523)
                      +....++|..|+|+.+++..   +++||+|||++|.|+.+.|++|.+++.|..|-+.+ |+|+ .+|.. |+.+. +|+.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~-slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLS-SLQR  144 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHH-HHHH
Confidence            34555666666665544443   55555555555555555555565555555554444 5555 44443 23333 5555


Q ss_pred             EEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          168 LDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      |.+.-|++..+..+.|..+++|..|.+.+|.+..+--..|..+..++.+.+..|.+..     ..+++.+.+.. ..+  
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~--  216 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMN--  216 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hhc--
Confidence            5555555555555555555555555555555543222355555555555555444210     00111110000 000  


Q ss_pred             cCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhh
Q 009858          248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL  327 (523)
Q Consensus       248 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (523)
                          +..+  ....-..-..+.+..+...-+..+...++.+.+-....+                 ......+...|..+
T Consensus       217 ----~iet--sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-----------------~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  217 ----PIET--SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-----------------FPDSICPAKCFKKL  273 (498)
T ss_pred             ----hhhc--ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-----------------CcCCcChHHHHhhc
Confidence                0000  111112222223333321111111111111110000000                 00111223447779


Q ss_pred             cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858          328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL  407 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  407 (523)
                      ++|+.|+|++|++++.-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|.+|..+.+|.+|++
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            99999999999999888899999999999999999998766778999999999999999999999999999999999999


Q ss_pred             CCCcCcc
Q 009858          408 SRNKLEG  414 (523)
Q Consensus       408 s~N~l~~  414 (523)
                      -.|++-+
T Consensus       354 ~~Np~~C  360 (498)
T KOG4237|consen  354 LSNPFNC  360 (498)
T ss_pred             ccCcccC
Confidence            9999863

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.86  E-value=2.7e-23  Score=210.17  Aligned_cols=266  Identities=29%  Similarity=0.348  Sum_probs=203.1

Q ss_pred             CCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858           93 KNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR  171 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~  171 (523)
                      ++++.|+.++|.++...+.. ..+|++++++.|+++ .+|+.+..+.+|+.++..+|+++ .+|..+.... +|+.|++.
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~  295 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAA  295 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhh
Confidence            78899999999988655554 778999999999998 45689999999999999999997 8999999998 89999999


Q ss_pred             CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCc-cccCCCC-CcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858          172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR-SLLNCAN-LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      +|.+. -+|....++..|++|+|..|++. .+|. .+..+.. |+.|+.+.|.+.....-.=..++.|+.|++.+|.+++
T Consensus       296 ~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  296 YNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            99999 56667788999999999999997 4554 3343433 7888888888763321112246779999999999987


Q ss_pred             cCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcc
Q 009858          250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI  329 (523)
Q Consensus       250 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (523)
                      ..-..+  .++.+|+.|+|++|.+. .+|...+.+                                          ++.
T Consensus       374 ~c~p~l--~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------------------------le~  408 (1081)
T KOG0618|consen  374 SCFPVL--VNFKHLKVLHLSYNRLN-SFPASKLRK------------------------------------------LEE  408 (1081)
T ss_pred             cchhhh--ccccceeeeeecccccc-cCCHHHHhc------------------------------------------hHH
Confidence            654444  67899999999999997 888876665                                          556


Q ss_pred             cccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858          330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR  409 (523)
Q Consensus       330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  409 (523)
                      |+.|+||||+++ .+|+.+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++...-.....-+.|++||+++
T Consensus       409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG  485 (1081)
T KOG0618|consen  409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG  485 (1081)
T ss_pred             hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence            667777777777 66677777777777777777776 566 567777777777777777653322222226777777777


Q ss_pred             Cc
Q 009858          410 NK  411 (523)
Q Consensus       410 N~  411 (523)
                      |.
T Consensus       486 N~  487 (1081)
T KOG0618|consen  486 NT  487 (1081)
T ss_pred             Cc
Confidence            76

>PLN03210 Resistant to P

Probab=99.86  E-value=3e-20  Score=208.08  Aligned_cols=290  Identities=22%  Similarity=0.251  Sum_probs=195.5

Q ss_pred             CCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      ..+|+.|+++++.+.......  +++|+.|+++++.....+| .+..+++|++|+|++|.....+|..+..+. +|++|+
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccC-CCCEEe
Confidence            467777777777765433222  6777777777665444555 366677777777777654456777777776 677777


Q ss_pred             ccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858          170 LRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      +++|.....+|..+ ++++|++|++++|.....+|..   .++|+.|++++|.+. .+|..+ .+++|+.|.+.++....
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK  761 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh
Confidence            77764444555544 5677777777777554444432   356777777777765 455443 46667777666533211


Q ss_pred             cCCCc-----cccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHH
Q 009858          250 HLRDY-----EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM  324 (523)
Q Consensus       250 ~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (523)
                      .....     ......++|+.|++++|.....+|.. ++++++|+.|++..+..... ++..                  
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~-LP~~------------------  821 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLET-LPTG------------------  821 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCe-eCCC------------------
Confidence            10000     00123578999999999877788865 78899999999876543221 1100                  


Q ss_pred             HhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCe
Q 009858          325 KILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAV  404 (523)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  404 (523)
                      ..+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+|++|.-...+|..+..+++|+.
T Consensus       822 ~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~  897 (1153)
T PLN03210        822 INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET  897 (1153)
T ss_pred             CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence            02688999999998655466653   468999999999998 78989999999999999996655567777889999999


Q ss_pred             EECCCCcCc
Q 009858          405 LNLSRNKLE  413 (523)
Q Consensus       405 L~Ls~N~l~  413 (523)
                      +++++|.--
T Consensus       898 L~l~~C~~L  906 (1153)
T PLN03210        898 VDFSDCGAL  906 (1153)
T ss_pred             eecCCCccc
Confidence            999999643

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=2.1e-23  Score=192.05  Aligned_cols=311  Identities=21%  Similarity=0.199  Sum_probs=217.3

Q ss_pred             EEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC-Ccc
Q 009858           97 YLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK-NRF  175 (523)
Q Consensus        97 ~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~-n~l  175 (523)
                      ..+.++-.++.++....+.-..+.|..|.|+.+.+.+|+.+++|+.|||++|+|+..-|++|..+. +|..|-+.+ |+|
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKI  128 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCch
Confidence            445556666655555577888899999999988888999999999999999999977888888887 566665555 899


Q ss_pred             cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCcc
Q 009858          176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE  255 (523)
Q Consensus       176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  255 (523)
                      +....+.|.+|..|+.|.+.-|++.-...+.|..+++|..|.+..|.+...--..|..+.+++.+.+..|.+...     
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----  203 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----  203 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----
Confidence            977777899999999999998888877778888999999999999888744444788888888888888864211     


Q ss_pred             ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecch-hHHHHHhhccccccc
Q 009858          256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ-EVKLMKILTIFTTID  334 (523)
Q Consensus       256 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~  334 (523)
                        .+++.+... +.-+.+.       +++........+....                  +... ...+......+..--
T Consensus       204 --CnL~wla~~-~a~~~ie-------tsgarc~~p~rl~~~R------------------i~q~~a~kf~c~~esl~s~~  255 (498)
T KOG4237|consen  204 --CNLPWLADD-LAMNPIE-------TSGARCVSPYRLYYKR------------------INQEDARKFLCSLESLPSRL  255 (498)
T ss_pred             --cccchhhhH-Hhhchhh-------cccceecchHHHHHHH------------------hcccchhhhhhhHHhHHHhh
Confidence              112222111 1111110       1111111100000000                  0000 000111112222222


Q ss_pred             CCCCccCcCcc-hhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858          335 LSKNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       335 Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      .+.+...+..| ..|..+++|+.|+|++|+++++-+.+|.++..+++|.|..|++...-..+|.++..|+.|+|.+|+++
T Consensus       256 ~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  256 SSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             ccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            23333443444 56899999999999999999999999999999999999999999887889999999999999999999


Q ss_pred             ccCCCC-CCCCcccCCccCCCCCCCCCCC
Q 009858          414 GRIPEG-NQFATFSSDSYGGNLGLCGFPL  441 (523)
Q Consensus       414 ~~~p~~-~~~~~~~~~~~~gn~~lc~~~~  441 (523)
                      ...|.. .....+..+.+-+||+.|.+.+
T Consensus       336 ~~~~~aF~~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  336 TVAPGAFQTLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             EEecccccccceeeeeehccCcccCccch
Confidence            887764 3344566777889999987743

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.85  E-value=6.1e-21  Score=200.17  Aligned_cols=247  Identities=24%  Similarity=0.387  Sum_probs=185.8

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      .+...|+++++.++..+....++|+.|++++|.++ .+|..+.  ++|++|++++|+++ .+|..+.   .+|+.|+|++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcC
Confidence            46788999998888654445778999999999888 4555543  58999999999988 7887654   3799999999


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      |.+. .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|.+... |
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P  320 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-P  320 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-C
Confidence            9988 5666554  47899999999887 5676553  589999999998874 554432  4688889999888753 3


Q ss_pred             CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT  332 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  332 (523)
                      ...    .++|+.|++++|.++ .+|..+                                             .++|+.
T Consensus       321 ~~l----~~sL~~L~Ls~N~Lt-~LP~~l---------------------------------------------~~sL~~  350 (754)
T PRK15370        321 ETL----PPGLKTLEAGENALT-SLPASL---------------------------------------------PPELQV  350 (754)
T ss_pred             ccc----cccceeccccCCccc-cCChhh---------------------------------------------cCcccE
Confidence            222    368889999998887 455321                                             357888


Q ss_pred             ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhh----cCCCCCCeEECC
Q 009858          333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPREL----TRLTFLAVLNLS  408 (523)
Q Consensus       333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls  408 (523)
                      |++++|+++ .+|..+.  ++|+.|+|++|+++ .+|..+.  ..|+.|++++|++. .+|..+    ..++.+..+++.
T Consensus       351 L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~  423 (754)
T PRK15370        351 LDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVE  423 (754)
T ss_pred             EECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEee
Confidence            999999988 5676553  68999999999988 5666554  46899999999988 444433    445788999999


Q ss_pred             CCcCc
Q 009858          409 RNKLE  413 (523)
Q Consensus       409 ~N~l~  413 (523)
                      +|+++
T Consensus       424 ~Npls  428 (754)
T PRK15370        424 YNPFS  428 (754)
T ss_pred             CCCcc
Confidence            99986

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.8e-20  Score=193.99  Aligned_cols=256  Identities=23%  Similarity=0.314  Sum_probs=192.9

Q ss_pred             CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEE
Q 009858          114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN  193 (523)
Q Consensus       114 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  193 (523)
                      ..-..|+++++.++ .+|..+.  ++|+.|++++|+++ .+|..    +++|++|++++|+++ .+|..   .++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLT-SLPVL---PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccC-cccCc---ccccceee
Confidence            45678999999998 5777664  48999999999999 78853    348999999999999 45643   46899999


Q ss_pred             CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccC
Q 009858          194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNF  273 (523)
Q Consensus       194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  273 (523)
                      +++|.+. .+|..   .++|+.|++++|+++. +|.   ..++|+.|++++|.+.+. |..     ..+|+.|++++|.+
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l-----p~~L~~L~Ls~N~L  334 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL-----PSELCKLWAYNNQL  334 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC-----cccccccccccCcc
Confidence            9999987 45543   3678899999999984 554   347899999999998764 322     35788999999999


Q ss_pred             CCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCccc
Q 009858          274 TGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHS  353 (523)
Q Consensus       274 ~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  353 (523)
                      + .+|..    ...|+.|+++++.....  +                    ...++|+.|++++|.+. .+|..   +.+
T Consensus       335 ~-~LP~l----p~~Lq~LdLS~N~Ls~L--P--------------------~lp~~L~~L~Ls~N~L~-~LP~l---~~~  383 (788)
T PRK15387        335 T-SLPTL----PSGLQELSVSDNQLASL--P--------------------TLPSELYKLWAYNNRLT-SLPAL---PSG  383 (788)
T ss_pred             c-ccccc----ccccceEecCCCccCCC--C--------------------CCCcccceehhhccccc-cCccc---ccc
Confidence            7 56631    24677888776643321  1                    01356888999999998 56653   357


Q ss_pred             CCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCC
Q 009858          354 LRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGG  432 (523)
Q Consensus       354 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~g  432 (523)
                      |+.|++++|+++ .+|..   .++|+.|++++|.+++ +|..+   .+|+.|++++|+++ .+|.. ..+..+....+.+
T Consensus       384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            999999999998 46653   3689999999999985 55433   46888999999998 67753 3455666677777


Q ss_pred             CCC
Q 009858          433 NLG  435 (523)
Q Consensus       433 n~~  435 (523)
                      |+.
T Consensus       455 N~L  457 (788)
T PRK15387        455 NPL  457 (788)
T ss_pred             CCC
Confidence            764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=1.8e-20  Score=196.68  Aligned_cols=227  Identities=26%  Similarity=0.420  Sum_probs=180.2

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      ++++.|+|++|.++..+....++|+.|++++|.++ .+|..+.  .+|+.|+|++|++. .+|..+.   .+|++|++++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcC
Confidence            58999999999999765555789999999999998 4566553  47999999999998 8898764   3799999999


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      |+++ .+|..+.  .+|++|++++|+++ .+|..+.  ++|+.|++++|.+.. +|..+  .++|+.|++++|.+.+ +|
T Consensus       272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP  341 (754)
T PRK15370        272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LP  341 (754)
T ss_pred             CccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CC
Confidence            9999 5677664  48999999999998 4565443  579999999999984 55544  3689999999999876 34


Q ss_pred             CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT  332 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  332 (523)
                      ...    .++|+.|++++|.++ .+|..+                                             .+.|+.
T Consensus       342 ~~l----~~sL~~L~Ls~N~L~-~LP~~l---------------------------------------------p~~L~~  371 (754)
T PRK15370        342 ASL----PPELQVLDVSKNQIT-VLPETL---------------------------------------------PPTITT  371 (754)
T ss_pred             hhh----cCcccEEECCCCCCC-cCChhh---------------------------------------------cCCcCE
Confidence            332    479999999999987 566432                                             356888


Q ss_pred             ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCcc----ccCCCCCCEEeCCCCcCCC
Q 009858          333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSS----LGDLTDLESLDLSSNVLDG  390 (523)
Q Consensus       333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~  390 (523)
                      |+|++|.++ .+|..+.  .+|+.|++++|++. .+|..    +..++.+..|++.+|.++.
T Consensus       372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            999999998 5665543  47899999999988 45543    3445888999999999873

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=2.6e-20  Score=181.67  Aligned_cols=260  Identities=21%  Similarity=0.215  Sum_probs=124.8

Q ss_pred             CCCCcEEEccCCcCCCc----CchhhhCCCCcCEEEccCCcCCc------cChhhHhhcccCCcEEEccCCcccccCCCC
Q 009858          113 SSNMRVFLISNNKFIGE----IPRLICNTSTIEILDLSNNSLSG------TIPECIGNFSKSLRVLDLRKNRFHGTIPET  182 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~  182 (523)
                      +.+|+.|+++++.++..    ++..+...+.|++|+++++.+.+      .++..+..+. +|++|++++|.+.+..+..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC-GLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC-ceeEEEccCCCCChhHHHH
Confidence            44455566665555322    23334445556666666655541      1233444443 5666666666555333333


Q ss_pred             CCCCCC---CCEEECcCCCCCC----CCCccccCC-CCCcEEECCCCcCCCC----chHhhhcCCCCCeEEeccccccCc
Q 009858          183 FPKGNN---LTTLNFNGNELVG----SVPRSLLNC-ANLQVLDLGNNKMKDT----FPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       183 ~~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      +..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            333332   6666666665542    112233344 5666666666665532    223344455566666666655431


Q ss_pred             CCCcc--ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhc
Q 009858          251 LRDYE--ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT  328 (523)
Q Consensus       251 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (523)
                      .....  .....++|+.|++++|.+.+.....+                                       ...+..++
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l---------------------------------------~~~~~~~~  221 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASAL---------------------------------------AETLASLK  221 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHH---------------------------------------HHHhcccC
Confidence            10000  01223456666666665542111110                                       01112245


Q ss_pred             ccccccCCCCccCcCcchhhc-----CcccCCeeeCcCCcccc----cCCccccCCCCCCEEeCCCCcCCCc----CChh
Q 009858          329 IFTTIDLSKNSFHGEIPELMG-----KLHSLRLLNLSQNILSG----NIPSSLGDLTDLESLDLSSNVLDGV----IPRE  395 (523)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~  395 (523)
                      +|++|++++|.+++.....+.     ..+.|++|++++|.+++    .+...+..+++|+++++++|.++..    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            566666666666542222211     12566666666666652    2223344456677777777766643    3333


Q ss_pred             hcCC-CCCCeEECCCCcC
Q 009858          396 LTRL-TFLAVLNLSRNKL  412 (523)
Q Consensus       396 l~~l-~~L~~L~Ls~N~l  412 (523)
                      +... +.|+++++.+|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         302 LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhhcCCchhhcccCCCCC
Confidence            3334 5666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=2.9e-19  Score=174.33  Aligned_cols=258  Identities=24%  Similarity=0.275  Sum_probs=177.3

Q ss_pred             EEEccCCcCC-CcCchhhhCCCCcCEEEccCCcCCcc----ChhhHhhcccCCcEEEccCCcccc------cCCCCCCCC
Q 009858          118 VFLISNNKFI-GEIPRLICNTSTIEILDLSNNSLSGT----IPECIGNFSKSLRVLDLRKNRFHG------TIPETFPKG  186 (523)
Q Consensus       118 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~~L~~L~L~~n~l~~------~~p~~~~~l  186 (523)
                      .|+|..+.+. ......+..+.+|+.|+++++.+++.    ++..+...+ +|++|+++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhc
Confidence            3566666665 33455667778899999999998633    444555554 69999999887762      233456667


Q ss_pred             CCCCEEECcCCCCCCCCCccccCCCC---CcEEECCCCcCCC----CchHhhhcC-CCCCeEEeccccccCcCCCc--cc
Q 009858          187 NNLTTLNFNGNELVGSVPRSLLNCAN---LQVLDLGNNKMKD----TFPHWLGTL-RELQVLILRSNKFYGHLRDY--EA  256 (523)
Q Consensus       187 ~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~--~~  256 (523)
                      ++|++|++++|.+....+..+..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+.+.....  ..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            88999999998887655555555554   9999999988773    233445566 88899999988876422111  11


Q ss_pred             cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCC
Q 009858          257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLS  336 (523)
Q Consensus       257 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  336 (523)
                      ...+++|++|++++|.+.+.....+.                                       ..+...++|+.|+++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~---------------------------------------~~l~~~~~L~~L~L~  201 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALA---------------------------------------EGLKANCNLEVLDLN  201 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHH---------------------------------------HHHHhCCCCCEEecc
Confidence            23456888888888887642111111                                       111224689999999


Q ss_pred             CCccCcC----cchhhcCcccCCeeeCcCCcccccCCcccc-----CCCCCCEEeCCCCcCCC----cCChhhcCCCCCC
Q 009858          337 KNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPSSLG-----DLTDLESLDLSSNVLDG----VIPRELTRLTFLA  403 (523)
Q Consensus       337 ~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~  403 (523)
                      +|.+++.    ++..+..+++|++|++++|.+++.....+.     ..+.|++|++++|.+++    .+...+..++.|+
T Consensus       202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~  281 (319)
T cd00116         202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL  281 (319)
T ss_pred             CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence            9998744    334566788999999999998863222222     24799999999999973    2345566778999


Q ss_pred             eEECCCCcCccc
Q 009858          404 VLNLSRNKLEGR  415 (523)
Q Consensus       404 ~L~Ls~N~l~~~  415 (523)
                      ++++++|.++..
T Consensus       282 ~l~l~~N~l~~~  293 (319)
T cd00116         282 ELDLRGNKFGEE  293 (319)
T ss_pred             EEECCCCCCcHH
Confidence            999999999843

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=1.3e-19  Score=148.43  Aligned_cols=162  Identities=33%  Similarity=0.602  Sum_probs=107.1

Q ss_pred             CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858          164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR  243 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  243 (523)
                      +...|.|++|+++ ..|..++.+.+|+.|++.+|++. .+|..++.+++|+.|+++.|++. ..|..|+.++.|+.|++.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            4555555555555 44445555555566666555554 45555666666666666666554 455555555555555555


Q ss_pred             cccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858          244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL  323 (523)
Q Consensus       244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (523)
                      .|.+.+.                         .+|..+|.                                        
T Consensus       111 ynnl~e~-------------------------~lpgnff~----------------------------------------  125 (264)
T KOG0617|consen  111 YNNLNEN-------------------------SLPGNFFY----------------------------------------  125 (264)
T ss_pred             ccccccc-------------------------cCCcchhH----------------------------------------
Confidence            5543211                         23333332                                        


Q ss_pred             HHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCC
Q 009858          324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL  399 (523)
Q Consensus       324 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  399 (523)
                         +..|+.|+|++|.+. .+|..++.+++|+.|.+..|.+. .+|..++.++.|++|++.+|+++ .+|..++++
T Consensus       126 ---m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  126 ---MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             ---HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence               677888888888887 78888899999999999999888 78888899999999999999988 455555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=3.5e-19  Score=145.99  Aligned_cols=159  Identities=28%  Similarity=0.449  Sum_probs=134.5

Q ss_pred             CCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858           91 PWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL  168 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L  168 (523)
                      .+.+++.|.||+|.++..+|..  +.+|+.|++++|++. .+|..++.+++|+.|++.-|++. .+|..|+.++ .|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc-hhhhh
Confidence            3588899999999998887766  889999999999887 67778888999999999988887 8899999887 79999


Q ss_pred             EccCCccc-ccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          169 DLRKNRFH-GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       169 ~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      ||++|.+. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            99988776 467888888888899999999886 78888889999999999988887 6888889999999999999887


Q ss_pred             cCcCCCc
Q 009858          248 YGHLRDY  254 (523)
Q Consensus       248 ~~~~~~~  254 (523)
                      +-..|+.
T Consensus       186 ~vlppel  192 (264)
T KOG0617|consen  186 TVLPPEL  192 (264)
T ss_pred             eecChhh
Confidence            6555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.67  E-value=3.1e-17  Score=175.06  Aligned_cols=189  Identities=21%  Similarity=0.332  Sum_probs=102.9

Q ss_pred             ccccccchhhHhhhhhhhhcccchhhHHHHhhhhhHHHHHHHhhhhhcCCccccc--cccCCCccchhhhhhhccccccC
Q 009858            3 KRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVH--GLQSHPRNTLKDYASAAEFEASD   80 (523)
Q Consensus         3 ~~~~eLi~r~~~q~~~~~~~~~~~~~~hdl~~~l~~~~~~~~~l~~l~~~~c~~~--~~~~~~~~~~~~~~~~~~l~~~~   80 (523)
                      .|+.|||.|++++..+......+|+ |||+|+|+|..++.-..-+.-+  .|...  +..+                   
T Consensus       458 ~~i~~LV~~~Ll~~~~~~~~~~~~k-mHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~-------------------  515 (889)
T KOG4658|consen  458 DYIEELVRASLLIEERDEGRKETVK-MHDVVREMALWIASDFGKQEEN--QIVSDGVGLSE-------------------  515 (889)
T ss_pred             HHHHHHHHHHHHhhcccccceeEEE-eeHHHHHHHHHHhccccccccc--eEEECCcCccc-------------------
Confidence            4688999999999987666678888 9999999999888411110000  11100  1111                   


Q ss_pred             CCcccCCCCCCCCCccEEEccCCCCccCCCCC-CCCCcEEEccCCc--CCCcCchhhhCCCCcCEEEccCCcCCccChhh
Q 009858           81 GPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNK--FIGEIPRLICNTSTIEILDLSNNSLSGTIPEC  157 (523)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  157 (523)
                      .|..     ..+...+.+.+-+|.+....-.. .+.|+.|-+.+|.  +....++.|..++.|++|||++|.--+.+|+.
T Consensus       516 ~~~~-----~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  516 IPQV-----KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             cccc-----cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence            1111     11244555555555543322222 4455555555554  33333334555566666666655433456666


Q ss_pred             HhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858          158 IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN  220 (523)
Q Consensus       158 l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  220 (523)
                      ++.+. +|++|+++++.+. .+|..+.+|..|.+|++..+.-...+|.....|.+|++|.+..
T Consensus       591 I~~Li-~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  591 IGELV-HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             Hhhhh-hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            66555 5666666666555 5555555566666666655544434444444556666655544

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=4.2e-15  Score=155.81  Aligned_cols=118  Identities=42%  Similarity=0.691  Sum_probs=105.4

Q ss_pred             ccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858          329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS  408 (523)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  408 (523)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCC--CCCcccCCccCCCCCCCCCCCCCCCC
Q 009858          409 RNKLEGRIPEGN--QFATFSSDSYGGNLGLCGFPLSKNCS  446 (523)
Q Consensus       409 ~N~l~~~~p~~~--~~~~~~~~~~~gn~~lc~~~~~~~c~  446 (523)
                      +|+++|.+|...  .+.......+.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999742  12234456789999999987655663

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.31  E-value=6.8e-14  Score=135.60  Aligned_cols=155  Identities=30%  Similarity=0.429  Sum_probs=110.6

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL  192 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (523)
                      +.--...|++.|++. .+|..++.+-.|+.+.|+.|.+. .+|..++++. .|.+|+|+.|+++ .+|..++.++ |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            444456677777776 56666777777888888888887 7888888887 7888888888887 6777776665 7888


Q ss_pred             ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCcc
Q 009858          193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN  272 (523)
Q Consensus       193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  272 (523)
                      -+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++....++..    -=.|..||++.|+
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~----~LpLi~lDfScNk  222 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC----SLPLIRLDFSCNK  222 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh----CCceeeeecccCc
Confidence            88888886 67777777788888888888876 577778888888888888777654333322    1134555555555


Q ss_pred             CCCCCch
Q 009858          273 FTGSLPA  279 (523)
Q Consensus       273 l~~~~p~  279 (523)
                      +. .+|.
T Consensus       223 is-~iPv  228 (722)
T KOG0532|consen  223 IS-YLPV  228 (722)
T ss_pred             ee-ecch
Confidence            54 4443

>PLN03150 hypothetical protein; Provisional

Probab=99.28  E-value=1.8e-11  Score=128.56  Aligned_cols=92  Identities=40%  Similarity=0.591  Sum_probs=83.9

Q ss_pred             hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCC-CCCCeE
Q 009858          327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL-TFLAVL  405 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L  405 (523)
                      +++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|.+++.+|..+..+ ..+..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            6889999999999999999999999999999999999999999999999999999999999999999988764 467889


Q ss_pred             ECCCCcCcccCCC
Q 009858          406 NLSRNKLEGRIPE  418 (523)
Q Consensus       406 ~Ls~N~l~~~~p~  418 (523)
                      ++.+|+..+..|.
T Consensus       521 ~~~~N~~lc~~p~  533 (623)
T PLN03150        521 NFTDNAGLCGIPG  533 (623)
T ss_pred             EecCCccccCCCC
Confidence            9999987765553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=1.4e-11  Score=123.67  Aligned_cols=101  Identities=34%  Similarity=0.446  Sum_probs=49.8

Q ss_pred             EEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCC-CCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858          142 ILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN-NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN  220 (523)
Q Consensus       142 ~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  220 (523)
                      .+++..+.+. ..+..+..+. .++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..+++|+.|+++.
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~-~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELT-NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccc-cCchhhhccc-ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            4555555553 2233333443 4666666666665 3333344442 5566666666554 3334455555555555555


Q ss_pred             CcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          221 NKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      |++. .+|...+..++|+.|++++|.+
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i  198 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKI  198 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCcc
Confidence            5554 2333333444444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.9e-12  Score=121.99  Aligned_cols=216  Identities=19%  Similarity=0.141  Sum_probs=151.2

Q ss_pred             hhhhHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCC---
Q 009858           34 SSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVP---  110 (523)
Q Consensus        34 ~~l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---  110 (523)
                      ..++...+.+.+|+.+.+++|........                        .-...+++++.||||+|-+....+   
T Consensus       111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~------------------------~~~k~~~~v~~LdLS~NL~~nw~~v~~  166 (505)
T KOG3207|consen  111 DKIAAKQSNLKKLREISLDNYRVEDAGIE------------------------EYSKILPNVRDLDLSRNLFHNWFPVLK  166 (505)
T ss_pred             HHHHHHhhhHHhhhheeecCccccccchh------------------------hhhhhCCcceeecchhhhHHhHHHHHH
Confidence            45566777888888888888875431110                        112246899999999998876444   


Q ss_pred             --CCCCCCcEEEccCCcCCCcCchh-hhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCC
Q 009858          111 --APSSNMRVFLISNNKFIGEIPRL-ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN  187 (523)
Q Consensus       111 --~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~  187 (523)
                        +.+++|+.|+++.|++..-.... -..+++|+.|.|+.|.++...-..+....++|+.|+|..|...........-+.
T Consensus       167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~  246 (505)
T KOG3207|consen  167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ  246 (505)
T ss_pred             HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence              33999999999999886322211 225789999999999998544344433335899999999964434445556678


Q ss_pred             CCCEEECcCCCCCCCCC--ccccCCCCCcEEECCCCcCCCC-chHh-----hhcCCCCCeEEeccccccCcCCCcccccc
Q 009858          188 NLTTLNFNGNELVGSVP--RSLLNCANLQVLDLGNNKMKDT-FPHW-----LGTLRELQVLILRSNKFYGHLRDYEADYY  259 (523)
Q Consensus       188 ~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  259 (523)
                      .|+.|+|++|++.. .+  .....++.|+.|+++.+.+... .|+.     ...+++|+.|++..|++.+. +..-....
T Consensus       247 ~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-~sl~~l~~  324 (505)
T KOG3207|consen  247 TLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-RSLNHLRT  324 (505)
T ss_pred             HHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-cccchhhc
Confidence            89999999998863 33  3467889999999999988753 2332     34578899999999987432 23333355


Q ss_pred             CCCCcEEeccCccCCC
Q 009858          260 FSKLRILDLSNNNFTG  275 (523)
Q Consensus       260 l~~L~~L~l~~n~l~~  275 (523)
                      +++|+.|.+..|.++.
T Consensus       325 l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhhhhcccccccc
Confidence            7788888877777753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=8.3e-13  Score=128.19  Aligned_cols=172  Identities=27%  Similarity=0.395  Sum_probs=133.7

Q ss_pred             CCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      +......||+.|.+...+...  +-.|+.+.+..|.+. .+|.+++++..|.+|||+.|+++ .+|..++.++  |+.|.
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLI  149 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEE
Confidence            355567788888887554443  677888888888877 67778888888888888888888 8888888885  88888


Q ss_pred             ccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858          170 LRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      +++|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..+ .|..||++.|++. 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence            8888888 77778888888888888888887 67777888888888888888876 466666643 5778888888775 


Q ss_pred             cCCCccccccCCCCcEEeccCccCC
Q 009858          250 HLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       250 ~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      .+|..+  ..|+.|++|-|.+|.+.
T Consensus       225 ~iPv~f--r~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 YLPVDF--RKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ecchhh--hhhhhheeeeeccCCCC
Confidence            445544  66788888888888876

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=4.8e-11  Score=119.84  Aligned_cols=197  Identities=35%  Similarity=0.502  Sum_probs=105.8

Q ss_pred             EEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCC-CCcEEECCCCcCCCCchHhhhcCCCCCeEEeccc
Q 009858          167 VLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA-NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN  245 (523)
Q Consensus       167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  245 (523)
                      .+++..+.+. .....+..++.++.|++.+|.++ .++.....++ +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4555555553 12222334455666666666665 3444444443 6666666666665 34445666666666666666


Q ss_pred             cccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHH
Q 009858          246 KFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK  325 (523)
Q Consensus       246 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (523)
                      ++....+..   ...++|+.|++++|.+. .+|...                                           .
T Consensus       174 ~l~~l~~~~---~~~~~L~~L~ls~N~i~-~l~~~~-------------------------------------------~  206 (394)
T COG4886         174 DLSDLPKLL---SNLSNLNNLDLSGNKIS-DLPPEI-------------------------------------------E  206 (394)
T ss_pred             hhhhhhhhh---hhhhhhhheeccCCccc-cCchhh-------------------------------------------h
Confidence            655433322   13556666666666665 444321                                           0


Q ss_pred             hhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858          326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL  405 (523)
Q Consensus       326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  405 (523)
                      .+..|+++.+++|.+. ..+..+..+.++..|.+.+|++. ..+..++.+++++.|++++|.++....  +..+.+++.|
T Consensus       207 ~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L  282 (394)
T COG4886         207 LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL  282 (394)
T ss_pred             hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEE
Confidence            0233555566665433 34444555555666666666555 234455556666666666666664332  5555666666


Q ss_pred             ECCCCcCcccCC
Q 009858          406 NLSRNKLEGRIP  417 (523)
Q Consensus       406 ~Ls~N~l~~~~p  417 (523)
                      ++++|.++...|
T Consensus       283 ~~s~n~~~~~~~  294 (394)
T COG4886         283 DLSGNSLSNALP  294 (394)
T ss_pred             eccCccccccch
Confidence            666666654444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.16  E-value=1.9e-11  Score=131.18  Aligned_cols=280  Identities=22%  Similarity=0.162  Sum_probs=173.3

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCc--CCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS--LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT  190 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (523)
                      ....|.+.+.+|.+. .++... .++.|++|-+.+|.  +. .++..++...+.|++|||++|.-.+.+|..++.|.+|+
T Consensus       522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            678899999998876 333333 35589999999996  55 66666555334899999999877679999999999999


Q ss_pred             EEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858          191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN  270 (523)
Q Consensus       191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  270 (523)
                      +|+++++.+. .+|..+.++++|.+|++..+.....+|.....+++|++|.+..-..............+.+|+.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            9999999998 899999999999999999988766678888889999999997654221111111123445555555432


Q ss_pred             ccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858          271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK  350 (523)
Q Consensus       271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  350 (523)
                      ...  .+-.. +..+..|......-...   .            ............+.+|+.|.+.++.+.+....+...
T Consensus       678 ~s~--~~~e~-l~~~~~L~~~~~~l~~~---~------------~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~  739 (889)
T KOG4658|consen  678 SSV--LLLED-LLGMTRLRSLLQSLSIE---G------------CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES  739 (889)
T ss_pred             chh--HhHhh-hhhhHHHHHHhHhhhhc---c------------cccceeecccccccCcceEEEEcCCCchhhcccccc
Confidence            221  00001 12222222211110000   0            000000111223667777777777765332222111


Q ss_pred             ------cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCccc
Q 009858          351 ------LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR  415 (523)
Q Consensus       351 ------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  415 (523)
                            ++++..+.+.+|... ..+.+.--.++|+.|.+..+...+.+.+....+..++.+-+..+.+.+.
T Consensus       740 ~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  740 LIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             cchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence                  234444444444333 2233333457888888888877777666666666676666666665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=5e-11  Score=102.72  Aligned_cols=107  Identities=36%  Similarity=0.455  Sum_probs=27.0

Q ss_pred             CCCCcCEEEccCCcCCccChhhHh-hcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccc-cCCCCC
Q 009858          136 NTSTIEILDLSNNSLSGTIPECIG-NFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL-LNCANL  213 (523)
Q Consensus       136 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L  213 (523)
                      +..++++|+|.+|.|+ .+ +.++ .+. +|+.|++++|.++.. . .+..++.|++|++++|.++.. ...+ ..+++|
T Consensus        17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~-~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TI-ENLGATLD-KLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-T-T--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             cccccccccccccccc-cc-cchhhhhc-CCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence            3445566666666665 33 2333 233 566666666666632 2 355566666666666666532 2223 345666


Q ss_pred             cEEECCCCcCCCC-chHhhhcCCCCCeEEecccccc
Q 009858          214 QVLDLGNNKMKDT-FPHWLGTLRELQVLILRSNKFY  248 (523)
Q Consensus       214 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~  248 (523)
                      ++|++++|++... .-..+..+++|+.|++.+|++.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            6666666665432 1133445555666666655554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=1.1e-11  Score=113.67  Aligned_cols=90  Identities=24%  Similarity=0.332  Sum_probs=58.9

Q ss_pred             HHhhcccccccCCCCccCcC----cchhhcCcccCCeeeCcCCcccccCCccc-----cCCCCCCEEeCCCCcCCCc---
Q 009858          324 MKILTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPSSL-----GDLTDLESLDLSSNVLDGV---  391 (523)
Q Consensus       324 ~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~---  391 (523)
                      +..+++|+.|||.+|.++..    +...+..+++|+.|++++|.+......+|     ...|+|+.|.+.+|.++..   
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            33467777777777776642    23445666778888888887765433222     2357888888888887642   


Q ss_pred             -CChhhcCCCCCCeEECCCCcCc
Q 009858          392 -IPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       392 -~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                       +...+...+.|..|+|++|.+.
T Consensus       289 ~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  289 ALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHhcchhhHHhcCCccccc
Confidence             2234455778888888888883

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=3.9e-11  Score=113.22  Aligned_cols=206  Identities=23%  Similarity=0.229  Sum_probs=109.5

Q ss_pred             CCcEEEccCCcccccCC-CCCCCCCCCCEEECcCCCCCCCC--CccccCCCCCcEEECCCCcCCCCchHhh-hcCCCCCe
Q 009858          164 SLRVLDLRKNRFHGTIP-ETFPKGNNLTTLNFNGNELVGSV--PRSLLNCANLQVLDLGNNKMKDTFPHWL-GTLRELQV  239 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~  239 (523)
                      .|+...|.++....... .....+++++.|+|++|-+....  ......+++|+.|+++.|++........ ..++.|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            56666666665552111 23445566666666666554211  1223445666666666665542211111 13445555


Q ss_pred             EEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecch
Q 009858          240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ  319 (523)
Q Consensus       240 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (523)
                      |.++.|.++..--.+ ....+|+|+.|++.+|......                                          
T Consensus       202 L~l~~CGls~k~V~~-~~~~fPsl~~L~L~~N~~~~~~------------------------------------------  238 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQW-ILLTFPSLEVLYLEANEIILIK------------------------------------------  238 (505)
T ss_pred             EEeccCCCCHHHHHH-HHHhCCcHHHhhhhccccccee------------------------------------------
Confidence            555555543111001 1123455555555555311000                                          


Q ss_pred             hHHHHHhhcccccccCCCCccCcCcc--hhhcCcccCCeeeCcCCccccc-CCcc-----ccCCCCCCEEeCCCCcCCCc
Q 009858          320 EVKLMKILTIFTTIDLSKNSFHGEIP--ELMGKLHSLRLLNLSQNILSGN-IPSS-----LGDLTDLESLDLSSNVLDGV  391 (523)
Q Consensus       320 ~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~Ls~n~l~~~  391 (523)
                       ......+..|+.|||++|++- ..+  ...+.++.|+.|+++.|.+... .|+.     ...+++|+.|+++.|++.+.
T Consensus       239 -~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  239 -ATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW  316 (505)
T ss_pred             -cchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence             000122567888888888776 333  3456778888888888887752 2332     24467888888888888532


Q ss_pred             -CChhhcCCCCCCeEECCCCcCcc
Q 009858          392 -IPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       392 -~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                       --..+..+++|+.|.+..|+++.
T Consensus       317 ~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  317 RSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccchhhccchhhhhhcccccccc
Confidence             11234556777888888888763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=2.1e-11  Score=111.92  Aligned_cols=249  Identities=22%  Similarity=0.254  Sum_probs=135.0

Q ss_pred             CCCCccEEEccCCCCccCCC-------CCCCCCcEEEccCCc---CCCcCch-------hhhCCCCcCEEEccCCcCCcc
Q 009858           91 PWKNLEYLDLRSNLLQGPVP-------APSSNMRVFLISNNK---FIGEIPR-------LICNTSTIEILDLSNNSLSGT  153 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~-------~~~~~L~~L~L~~n~---l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~  153 (523)
                      ++..++.++||+|.+.....       ...++|+.-++++--   ....+|+       ++..+++|++||||+|.+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            45788888888888753221       114567777666531   1222332       334456777777777776655


Q ss_pred             ChhhHhhcc---cCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC----
Q 009858          154 IPECIGNFS---KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT----  226 (523)
Q Consensus       154 ~p~~l~~l~---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----  226 (523)
                      .+..+..+.   ..|++|.|.+|.+.-.-...++.  .|..|.  .+       .-..+-++|+++..+.|++...    
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~  176 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATA  176 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccHHH
Confidence            444444322   14666666666554111111110  011111  00       1123346677777777766432    


Q ss_pred             chHhhhcCCCCCeEEeccccccCcCC--CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccC
Q 009858          227 FPHWLGTLRELQVLILRSNKFYGHLR--DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG  304 (523)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~  304 (523)
                      +...|...+.|+.+.+..|.+...--  ...++..+++|+.|||.+|.++..-...+-                      
T Consensus       177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La----------------------  234 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA----------------------  234 (382)
T ss_pred             HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH----------------------
Confidence            23445566777777777776532111  112335677777888777776522111110                      


Q ss_pred             ccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhh-----cCcccCCeeeCcCCccccc----CCccccCC
Q 009858          305 ETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-----GKLHSLRLLNLSQNILSGN----IPSSLGDL  375 (523)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~p~~~~~l  375 (523)
                                       ..++.+++|+.|++++|.+...-...+     ...++|+.|.+.+|.++..    +-..+...
T Consensus       235 -----------------kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek  297 (382)
T KOG1909|consen  235 -----------------KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK  297 (382)
T ss_pred             -----------------HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence                             112225677777777777765433222     2367888888888887642    22334557


Q ss_pred             CCCCEEeCCCCcCC
Q 009858          376 TDLESLDLSSNVLD  389 (523)
Q Consensus       376 ~~L~~L~Ls~n~l~  389 (523)
                      +.|+.|+|++|.+.
T Consensus       298 ~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  298 PDLEKLNLNGNRLG  311 (382)
T ss_pred             hhhHHhcCCccccc
Confidence            88888899988883

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=1.6e-11  Score=110.32  Aligned_cols=86  Identities=34%  Similarity=0.413  Sum_probs=62.5

Q ss_pred             hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcC-ChhhcCCCCCCeE
Q 009858          327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI-PRELTRLTFLAVL  405 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L  405 (523)
                      +++|+.||||+|.++ .+..|-..+-+.+.|.|++|.+.. + ..++.+-+|..||+++|+|.... ...++++|-|+.+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            566777777777776 566666677778888888887763 2 34677778888888888886432 2457788888888


Q ss_pred             ECCCCcCccc
Q 009858          406 NLSRNKLEGR  415 (523)
Q Consensus       406 ~Ls~N~l~~~  415 (523)
                      .|.+|++.+.
T Consensus       405 ~L~~NPl~~~  414 (490)
T KOG1259|consen  405 RLTGNPLAGS  414 (490)
T ss_pred             hhcCCCcccc
Confidence            8888888743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=7.5e-10  Score=95.46  Aligned_cols=140  Identities=25%  Similarity=0.339  Sum_probs=54.8

Q ss_pred             CCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCC-CCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC
Q 009858          147 NNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFP-KGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD  225 (523)
Q Consensus       147 ~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  225 (523)
                      .+.|. ..|... +.. .+++|+|++|.|+.+  +.++ .+.+|+.|++++|.++. + ..+..+++|++|++++|+++.
T Consensus         6 ~~~i~-~~~~~~-n~~-~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen    6 ANMIE-QIAQYN-NPV-KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S
T ss_pred             ccccc-cccccc-ccc-ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc
Confidence            33443 444433 333 699999999999943  2455 57899999999999984 3 358889999999999999985


Q ss_pred             CchHhh-hcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCC--chHHHhcccccccccccc
Q 009858          226 TFPHWL-GTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSL--PAMFFKNMKAMTDIGEAA  295 (523)
Q Consensus       226 ~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~l~~~~  295 (523)
                      . .+.+ ..+++|++|++++|.+... ........+++|+.|++.+|.++..-  ....+..+++|+.|+-..
T Consensus        79 i-~~~l~~~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   79 I-SEGLDKNLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             --CHHHHHH-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             c-ccchHHhCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            4 3444 4699999999999998754 34445567999999999999987331  224567788888887653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=6.5e-11  Score=106.40  Aligned_cols=129  Identities=28%  Similarity=0.306  Sum_probs=76.9

Q ss_pred             CCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEE
Q 009858          138 STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLD  217 (523)
Q Consensus       138 ~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  217 (523)
                      +.|+++|||+|.|+ .+.+++.-.+ .++.|++++|.+..+ . .++.+++|+.|||++|.++ .+.++=.++-+.++|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee-h-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            45666777777766 5666655554 577777777766632 2 2566667777777777665 3334444566666777


Q ss_pred             CCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858          218 LGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       218 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      |++|.+...  ..++.+-+|..|++++|++.. +......+.+|-|+++.+.+|.+.
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCcc
Confidence            777665421  335555666677777776542 222233355666667777777665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.96  E-value=1.1e-10  Score=117.48  Aligned_cols=245  Identities=25%  Similarity=0.265  Sum_probs=142.4

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL  192 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (523)
                      +..++.+++..|.+.. .-..+..+++|+.|++.+|.|. .+...+..+. +|++|++++|.|+.+.  .+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhh-cchheecccccccccc--chhhccchhhh
Confidence            4455555555555542 2223556667777777777776 4444355555 6777777777776443  24556667777


Q ss_pred             ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCc
Q 009858          193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN  271 (523)
Q Consensus       193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  271 (523)
                      ++.+|.+..  ...+..+++|+.+++++|++...-+ . ...+.+++.+++.+|.+......    ..+..+..+++..|
T Consensus       146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDN  218 (414)
T ss_pred             eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccc
Confidence            777777752  2344556777777777777664332 1 45566666677766655322111    11233333455555


Q ss_pred             cCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhc--ccccccCCCCccCcCcchhhc
Q 009858          272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT--IFTTIDLSKNSFHGEIPELMG  349 (523)
Q Consensus       272 ~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~  349 (523)
                      .++..-+..                                             .+.  .|+.+++++|.+. ..+..+.
T Consensus       219 ~i~~~~~l~---------------------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~  252 (414)
T KOG0531|consen  219 KISKLEGLN---------------------------------------------ELVMLHLRELYLSGNRIS-RSPEGLE  252 (414)
T ss_pred             cceeccCcc---------------------------------------------cchhHHHHHHhcccCccc-ccccccc
Confidence            444111100                                             011  3778888888877 4445566


Q ss_pred             CcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCc---CCh-hhcCCCCCCeEECCCCcCcccCC
Q 009858          350 KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV---IPR-ELTRLTFLAVLNLSRNKLEGRIP  417 (523)
Q Consensus       350 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~~~-~l~~l~~L~~L~Ls~N~l~~~~p  417 (523)
                      .+..+..|++.+|.+...  ..+...+.+..+....|.+...   ... .....+.+..+.+.+|+.....+
T Consensus       253 ~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  253 NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            777888888888877642  2345556677777777776522   111 14456678888888888775544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=5.5e-10  Score=79.10  Aligned_cols=60  Identities=42%  Similarity=0.587  Sum_probs=38.4

Q ss_pred             cCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858          353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       353 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      +|++|++++|+++...+..|..+++|++|++++|+++...+..|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466666666666655555666666666666666666666666666666666666666653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.90  E-value=2.2e-10  Score=115.17  Aligned_cols=219  Identities=28%  Similarity=0.336  Sum_probs=133.3

Q ss_pred             CCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcE
Q 009858          136 NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQV  215 (523)
Q Consensus       136 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  215 (523)
                      .+..++.+++..|.+. .+-..+..+. +|+.|++.+|++..+ ...+..+++|++|++++|.|+...  .+..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~-~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLSKLK-SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhccccccc-ceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhh
Confidence            4556666667777776 3334455555 677777777777733 222556677777777777776332  3455666777


Q ss_pred             EECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccc
Q 009858          216 LDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAA  295 (523)
Q Consensus       216 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~  295 (523)
                      |++++|.+...  ..+..++.|+.+++++|.+....+..  ...+.+++.+.+++|.+...-.                 
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~i~~-----------------  203 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIREIEG-----------------  203 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhcccc-----------------
Confidence            77777776532  23444666777777777665433310  1335566666666665541111                 


Q ss_pred             ccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcc--cCCeeeCcCCcccccCCcccc
Q 009858          296 DENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLH--SLRLLNLSQNILSGNIPSSLG  373 (523)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~  373 (523)
                                                  ......+..+++..|.++..-+  +..+.  +|+.+++++|.+. ..+..+.
T Consensus       204 ----------------------------~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~  252 (414)
T KOG0531|consen  204 ----------------------------LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLE  252 (414)
T ss_pred             ----------------------------hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-ccccccc
Confidence                                        1112334445777777763322  12222  3889999999888 4445677


Q ss_pred             CCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858          374 DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       374 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      .+..+..|++.+|++...  ..+...+.+..+....|++.
T Consensus       253 ~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  253 NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            788899999999988754  33455666777777777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.3e-09  Score=77.22  Aligned_cols=61  Identities=34%  Similarity=0.499  Sum_probs=56.6

Q ss_pred             cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcC
Q 009858          328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL  388 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  388 (523)
                      |+|++|++++|+++...+.+|..+++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999977678999999999999999999988888999999999999999985

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4.3e-09  Score=94.84  Aligned_cols=224  Identities=19%  Similarity=0.239  Sum_probs=119.1

Q ss_pred             CEEEccCCcCCccChhhHhhcc-cCCcEEEccCCccccc-CCCCCCCC-CCCCEEECcCCCCCC-CCCccccCCCCCcEE
Q 009858          141 EILDLSNNSLSGTIPECIGNFS-KSLRVLDLRKNRFHGT-IPETFPKG-NNLTTLNFNGNELVG-SVPRSLLNCANLQVL  216 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~-~~L~~L~L~~n~l~~~-~p~~~~~l-~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L  216 (523)
                      +.||+.+-.|.   |..++.+. +....+-+....+... +.+.+... ..|++|||++..|+. .+-..++.+.+|+.|
T Consensus       139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l  215 (419)
T KOG2120|consen  139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL  215 (419)
T ss_pred             eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence            45677766655   55555543 1333444443333211 22222222 247888888777653 222345667888888


Q ss_pred             ECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccc
Q 009858          217 DLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD  296 (523)
Q Consensus       217 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~  296 (523)
                      .+.++++...+...++.-.+|+.|+++.+.-............++.|..|+++.|.+....-..+.              
T Consensus       216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V--------------  281 (419)
T KOG2120|consen  216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV--------------  281 (419)
T ss_pred             cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH--------------
Confidence            888888887777778888888888888775322211112224566777777777765432211111              


Q ss_pred             cccccccCccccccceEEEecchhHHHHHhhcccccccCCCCc--cCc-CcchhhcCcccCCeeeCcCCcc-cccCCccc
Q 009858          297 ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNS--FHG-EIPELMGKLHSLRLLNLSQNIL-SGNIPSSL  372 (523)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~  372 (523)
                                                 ...-++|+.|+|+|+.  +.. .+..-...+++|.+|||++|.. +...-.+|
T Consensus       282 ---------------------------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~  334 (419)
T KOG2120|consen  282 ---------------------------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  334 (419)
T ss_pred             ---------------------------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence                                       1123455556665542  111 1222234456666666666532 22222344


Q ss_pred             cCCCCCCEEeCCCCcCCCcCChh---hcCCCCCCeEECCCC
Q 009858          373 GDLTDLESLDLSSNVLDGVIPRE---LTRLTFLAVLNLSRN  410 (523)
Q Consensus       373 ~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~N  410 (523)
                      -.++.|++|.++.|..  ++|..   +...|+|.+||+.++
T Consensus       335 ~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  335 FKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            5566666666666653  23333   345566666666544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.52  E-value=1.3e-09  Score=109.28  Aligned_cols=178  Identities=24%  Similarity=0.296  Sum_probs=101.6

Q ss_pred             CCCCCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCC---cCc---hhhhC---CCCcCEEEccCCcCCccChh
Q 009858           88 KKLPWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIG---EIP---RLICN---TSTIEILDLSNNSLSGTIPE  156 (523)
Q Consensus        88 ~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~---~~~---~~~~~---l~~L~~L~L~~n~l~~~~p~  156 (523)
                      .+.+|++|++|.|.++.+....--.  -..|+.|... |.+..   .+.   ..|++   --.|.+.+.++|.+. .+-.
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~  181 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDE  181 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHH
Confidence            4567899999999999876421111  2223333221 11110   000   01111   124666677777776 5556


Q ss_pred             hHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCC
Q 009858          157 CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRE  236 (523)
Q Consensus       157 ~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  236 (523)
                      ++.-++ .|+.|+|++|+++...  .+..+++|++|||+.|.+....-....++. |+.|++.+|.++..  ..+.++.+
T Consensus       182 SLqll~-ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks  255 (1096)
T KOG1859|consen  182 SLQLLP-ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS  255 (1096)
T ss_pred             HHHHHH-HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence            665555 6777777777777432  566777777777777777632222333344 77777777776532  34667777


Q ss_pred             CCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858          237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       237 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      |+.||+++|-+.+.- +....+.+..|+.|.|.||.+.
T Consensus       256 L~~LDlsyNll~~hs-eL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHS-ELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhccchhHhhhhcch-hhhHHHHHHHHHHHhhcCCccc
Confidence            777777777665432 2222244566777777777664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=5.6e-08  Score=87.78  Aligned_cols=82  Identities=24%  Similarity=0.250  Sum_probs=50.1

Q ss_pred             hcccccccCCCCccCcCc-chhhcCcccCCeeeCcCCcccccC-CccccCCCCCCEEeCCCCcCCCcCCh------hhcC
Q 009858          327 LTIFTTIDLSKNSFHGEI-PELMGKLHSLRLLNLSQNILSGNI-PSSLGDLTDLESLDLSSNVLDGVIPR------ELTR  398 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~------~l~~  398 (523)
                      +|++..+-+..|.+.... ...+..++.+..|+|+.|+|.... -+++..++.|..|.+++|.+.+.+..      .++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            566666666666654322 233445666677788877776421 24566778888888888877654322      1355


Q ss_pred             CCCCCeEECC
Q 009858          399 LTFLAVLNLS  408 (523)
Q Consensus       399 l~~L~~L~Ls  408 (523)
                      +++++.|+=+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            6777776644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=2.6e-07  Score=83.52  Aligned_cols=69  Identities=17%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             CcccCCeeeCcCCccccc-CCccccCCCCCCEEeCCCCcCCCc-CChhhcCCCCCCeEECCCCcCcccCCC
Q 009858          350 KLHSLRLLNLSQNILSGN-IPSSLGDLTDLESLDLSSNVLDGV-IPRELTRLTFLAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       350 ~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~p~  418 (523)
                      -++++..+.+..|++... ....+..++.+..|+|+.|+|... -.+.+..++.|..|.+++|++...+..
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            356788888989987642 234566788899999999999753 235678899999999999999866554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.37  E-value=2.2e-08  Score=100.57  Aligned_cols=104  Identities=26%  Similarity=0.255  Sum_probs=65.3

Q ss_pred             CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858          164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR  243 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  243 (523)
                      .|...+.++|.+. .+..++.-++.|+.|+|++|+++..  ..+..+++|++|||+.|.+.. +|..-..-..|+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeeec
Confidence            4666677777776 4555666667777777777777632  266777777777777777763 33311112237777777


Q ss_pred             cccccCcCCCccccccCCCCcEEeccCccCCC
Q 009858          244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTG  275 (523)
Q Consensus       244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  275 (523)
                      +|.+....    ...++.+|+.||+++|-+.+
T Consensus       241 nN~l~tL~----gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  241 NNALTTLR----GIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             ccHHHhhh----hHHhhhhhhccchhHhhhhc
Confidence            77654321    22456777777777776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.35  E-value=3.1e-08  Score=79.03  Aligned_cols=87  Identities=32%  Similarity=0.450  Sum_probs=48.6

Q ss_pred             cccccccCCCCccCcCcchhh-cCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEE
Q 009858          328 TIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN  406 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  406 (523)
                      ..|+..+|++|.+. ..|..| ..++.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            34455566666665 333333 33445666666666666 45555666666666666666665 3344454566666666


Q ss_pred             CCCCcCcccCCC
Q 009858          407 LSRNKLEGRIPE  418 (523)
Q Consensus       407 Ls~N~l~~~~p~  418 (523)
                      ..+|.+. .+|.
T Consensus       130 s~~na~~-eid~  140 (177)
T KOG4579|consen  130 SPENARA-EIDV  140 (177)
T ss_pred             CCCCccc-cCcH
Confidence            6666554 3443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=7.1e-08  Score=87.13  Aligned_cols=228  Identities=19%  Similarity=0.227  Sum_probs=148.3

Q ss_pred             cEEEccCCcCCCcCchhhhCC--CCcCEEEccCCcCCcc-ChhhHhhcccCCcEEEccCCcccc-cCCCCCCCCCCCCEE
Q 009858          117 RVFLISNNKFIGEIPRLICNT--STIEILDLSNNSLSGT-IPECIGNFSKSLRVLDLRKNRFHG-TIPETFPKGNNLTTL  192 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~-~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L  192 (523)
                      ..+|+.+-.+.   |.++..+  .....+.+....+... +.+.+.-....|++|||++..|+. .+...+..+.+|+.|
T Consensus       139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l  215 (419)
T KOG2120|consen  139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL  215 (419)
T ss_pred             eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence            55666655443   3343333  3445555554433211 222222222369999999988873 233345567889999


Q ss_pred             ECcCCCCCCCCCccccCCCCCcEEECCCCc-CCCC-chHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858          193 NFNGNELVGSVPRSLLNCANLQVLDLGNNK-MKDT-FPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN  270 (523)
Q Consensus       193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  270 (523)
                      .+.++++.+.+...+..-.+|+.|+++++. ++.. ..--+.+++.|+.|+++-|.+....-......--++|..|+++|
T Consensus       216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG  295 (419)
T KOG2120|consen  216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG  295 (419)
T ss_pred             cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence            999999988777888889999999999875 3221 12245688999999999998755443222223346788888887


Q ss_pred             ccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCC-ccCcCcchhhc
Q 009858          271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKN-SFHGEIPELMG  349 (523)
Q Consensus       271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~  349 (523)
                      +.-.  +.   ...                                   .......+|+|..||||+| .++......|.
T Consensus       296 ~rrn--l~---~sh-----------------------------------~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  296 YRRN--LQ---KSH-----------------------------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             hHhh--hh---hhH-----------------------------------HHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            6432  00   000                                   0112344789999999988 45555556778


Q ss_pred             CcccCCeeeCcCCcccccCCc---cccCCCCCCEEeCCCCcCC
Q 009858          350 KLHSLRLLNLSQNILSGNIPS---SLGDLTDLESLDLSSNVLD  389 (523)
Q Consensus       350 ~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~n~l~  389 (523)
                      .++.|++|.++.|..  ++|.   .+...|+|.+|++.++--.
T Consensus       336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence            899999999999964  4554   4567899999999887543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=1.1e-07  Score=76.00  Aligned_cols=81  Identities=27%  Similarity=0.394  Sum_probs=41.3

Q ss_pred             cccccCCCCccCcCcchh---hcCcccCCeeeCcCCcccccCCcccc-CCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858          330 FTTIDLSKNSFHGEIPEL---MGKLHSLRLLNLSQNILSGNIPSSLG-DLTDLESLDLSSNVLDGVIPRELTRLTFLAVL  405 (523)
Q Consensus       330 L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  405 (523)
                      +..++|++|.+. .+++.   +.....|+..+|++|.+. ..|..|. ..+.++.|+|++|.++ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344555555544 33332   233344455566666655 3333333 2345566666666665 344446666666666


Q ss_pred             ECCCCcCc
Q 009858          406 NLSRNKLE  413 (523)
Q Consensus       406 ~Ls~N~l~  413 (523)
                      +++.|++.
T Consensus       106 Nl~~N~l~  113 (177)
T KOG4579|consen  106 NLRFNPLN  113 (177)
T ss_pred             ccccCccc
Confidence            66666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=1.5e-06  Score=77.74  Aligned_cols=65  Identities=23%  Similarity=0.359  Sum_probs=34.3

Q ss_pred             CCCCcEEECCCCcCCCCc----hHhhhcCCCCCeEEeccccccCcCCC---ccccccCCCCcEEeccCccCC
Q 009858          210 CANLQVLDLGNNKMKDTF----PHWLGTLRELQVLILRSNKFYGHLRD---YEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       210 l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      -|.|+......|++....    ...+.....|+++.+..|.+...--.   ......+.+|+.||+..|.++
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            456666666666654211    11233345677777777655321100   112234567777777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.07  E-value=3.5e-07  Score=81.68  Aligned_cols=193  Identities=20%  Similarity=0.223  Sum_probs=109.0

Q ss_pred             CCCCCCCCEEECcCCCCCCCCCc----cccCCCCCcEEECCCCcCCCCchHhh-------------hcCCCCCeEEeccc
Q 009858          183 FPKGNNLTTLNFNGNELVGSVPR----SLLNCANLQVLDLGNNKMKDTFPHWL-------------GTLRELQVLILRSN  245 (523)
Q Consensus       183 ~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l-------------~~l~~L~~L~l~~n  245 (523)
                      +.++++|+..+|+.|-+....|.    .+++-+.|++|.+++|.+....-.-+             ..-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            44667777777777776655543    34556777788887777642211111             23466777777777


Q ss_pred             cccCcCCCccc--cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858          246 KFYGHLRDYEA--DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL  323 (523)
Q Consensus       246 ~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (523)
                      ++........+  ...-.+|+.+.+.+|.+.   |..    ...                               ....-
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIr---peg----v~~-------------------------------L~~~g  209 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIR---PEG----VTM-------------------------------LAFLG  209 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcC---cch----hHH-------------------------------HHHHH
Confidence            76432221111  111246777777777654   211    000                               01111


Q ss_pred             HHhhcccccccCCCCccCcCc----chhhcCcccCCeeeCcCCcccccCCcc----cc--CCCCCCEEeCCCCcCCCcCC
Q 009858          324 MKILTIFTTIDLSKNSFHGEI----PELMGKLHSLRLLNLSQNILSGNIPSS----LG--DLTDLESLDLSSNVLDGVIP  393 (523)
Q Consensus       324 ~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~--~l~~L~~L~Ls~n~l~~~~~  393 (523)
                      ...+.+|+.|||..|.++-.-    ...+...+.|+.|.+..|-++......    |.  ..|+|..|-..+|...+.+.
T Consensus       210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i  289 (388)
T COG5238         210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII  289 (388)
T ss_pred             HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence            223678888888888877432    233344566888888888776533221    22  24778888888887654321


Q ss_pred             h-----hh--cCCCCCCeEECCCCcCc
Q 009858          394 R-----EL--TRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       394 ~-----~l--~~l~~L~~L~Ls~N~l~  413 (523)
                      .     .|  .++|-|..|.+.+|.+.
T Consensus       290 ~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         290 LDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             eeechhhhhhcccHHHHHHHHccCcch
Confidence            1     11  34666777777777776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=2e-06  Score=90.56  Aligned_cols=153  Identities=23%  Similarity=0.320  Sum_probs=109.9

Q ss_pred             CCcCEEEccCCc-CCccChhhHhhcccCCcEEEccCCcccc-cCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcE
Q 009858          138 STIEILDLSNNS-LSGTIPECIGNFSKSLRVLDLRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQV  215 (523)
Q Consensus       138 ~~L~~L~L~~n~-l~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  215 (523)
                      .+|+.||+++.. +....|..++.+.|+|+.|.+++-.+.. ..-....++++|..||+++++++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            689999999875 3446778888888899999999866642 2223355788999999999998743  67889999999


Q ss_pred             EECCCCcCCC-CchHhhhcCCCCCeEEeccccccCcCCCc----cccccCCCCcEEeccCccCCCCCchHHHhccccccc
Q 009858          216 LDLGNNKMKD-TFPHWLGTLRELQVLILRSNKFYGHLRDY----EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTD  290 (523)
Q Consensus       216 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~  290 (523)
                      |.+.+=.+.. ..-..+..+++|+.||+|...........    .....+|+|+.||.|+..+...+-+.+...-++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            9888766553 22245678999999999987654332100    112358999999999998886666665555555555


Q ss_pred             cc
Q 009858          291 IG  292 (523)
Q Consensus       291 l~  292 (523)
                      +.
T Consensus       280 i~  281 (699)
T KOG3665|consen  280 IA  281 (699)
T ss_pred             hh
Confidence            44

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.01  E-value=3.2e-05  Score=75.33  Aligned_cols=76  Identities=16%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             HhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCC
Q 009858          158 IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLREL  237 (523)
Q Consensus       158 l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  237 (523)
                      +..+. ++++|++++|.++ .+| .+  ..+|++|.++++.-...+|+.+  .++|++|++++|.....+|      .+|
T Consensus        48 ~~~~~-~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sL  114 (426)
T PRK15386         48 IEEAR-ASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESV  114 (426)
T ss_pred             HHHhc-CCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------ccc
Confidence            44454 7889999988777 455 22  2368888888754444566544  2577888887773222343      245


Q ss_pred             CeEEecccc
Q 009858          238 QVLILRSNK  246 (523)
Q Consensus       238 ~~L~l~~n~  246 (523)
                      +.|++..+.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            666665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=2.4e-05  Score=76.19  Aligned_cols=133  Identities=20%  Similarity=0.304  Sum_probs=88.2

Q ss_pred             CCCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCC-cCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN-SLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      +++++.|++++|.++.. |....+|+.|.++++.-...+|+.+  .++|++|++++| .+. .+|.       +|+.|++
T Consensus        51 ~~~l~~L~Is~c~L~sL-P~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sLe~L~L  119 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-PVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SVRSLEI  119 (426)
T ss_pred             hcCCCEEEeCCCCCccc-CCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------ccceEEe
Confidence            47899999999988765 4556789999999865545667655  358999999998 554 5553       6888888


Q ss_pred             cCCccc--ccCCCCCCCCCCCCEEECcCCCCC--CCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccc
Q 009858          171 RKNRFH--GTIPETFPKGNNLTTLNFNGNELV--GSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK  246 (523)
Q Consensus       171 ~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  246 (523)
                      +.+...  +.+|.      +|+.|.+.+++..  ..+|..  -.++|++|++++|... ..|..+-  .+|+.|+++.+.
T Consensus       120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            776543  12332      4677777543311  111211  1267999999988765 3443332  578899987763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=1.2e-05  Score=51.97  Aligned_cols=36  Identities=36%  Similarity=0.598  Sum_probs=18.3

Q ss_pred             CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCC
Q 009858          115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS  151 (523)
Q Consensus       115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  151 (523)
                      +|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 23334555555555555555555

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.94  E-value=1.9e-05  Score=67.80  Aligned_cols=107  Identities=18%  Similarity=0.208  Sum_probs=72.9

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccC-CCCCCCCCCCCE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTI-PETFPKGNNLTT  191 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~  191 (523)
                      ..+...+||++|.+...  ..|..++.|.+|.+.+|+|+ .+...+..+.++|..|.|.+|++.... -.-+..++.|++
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            45666777777776522  24667788888888888888 666666666667888888888776211 113556778888


Q ss_pred             EECcCCCCCCCCC---ccccCCCCCcEEECCCCc
Q 009858          192 LNFNGNELVGSVP---RSLLNCANLQVLDLGNNK  222 (523)
Q Consensus       192 L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~  222 (523)
                      |.+-+|++...--   -.+..+++|+.||.+.-.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            8888887763221   245677888888877644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1.3e-05  Score=51.79  Aligned_cols=36  Identities=36%  Similarity=0.624  Sum_probs=19.7

Q ss_pred             CcCEEEccCCcCCccChhhHhhcccCCcEEEccCCccc
Q 009858          139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH  176 (523)
Q Consensus       139 ~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~  176 (523)
                      +|++|++++|+++ .+|..++.+. +|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~-~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLP-NLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCT-TSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCC-CCCEEEecCCCCC
Confidence            4556666666665 4555555555 5666666666555

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.87  E-value=3.1e-05  Score=66.58  Aligned_cols=129  Identities=24%  Similarity=0.270  Sum_probs=84.3

Q ss_pred             cCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858          140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG  219 (523)
Q Consensus       140 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  219 (523)
                      =+.++|.+.++. .+.. ++....+...+||++|.+.. + ..|..++.|.+|.+++|+|+.+-|.--..+++|..|.|.
T Consensus        21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc-chhh-ccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            345566665554 2222 33333467788888887762 2 357778888888888888886666555557788888888


Q ss_pred             CCcCCCCc-hHhhhcCCCCCeEEeccccccCcCC-CccccccCCCCcEEeccCcc
Q 009858          220 NNKMKDTF-PHWLGTLRELQVLILRSNKFYGHLR-DYEADYYFSKLRILDLSNNN  272 (523)
Q Consensus       220 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~  272 (523)
                      +|++.... -+-+..++.|++|.+-+|+...... .....+.+|+|+.||...-.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88876321 1235677888888888887653321 12233678899999887643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=1.1e-05  Score=85.01  Aligned_cols=148  Identities=19%  Similarity=0.240  Sum_probs=98.9

Q ss_pred             CCccEEEccCCCCccCCC-C----CCCCCcEEEccCCcCCCcC-chhhhCCCCcCEEEccCCcCCccChhhHhhcccCCc
Q 009858           93 KNLEYLDLRSNLLQGPVP-A----PSSNMRVFLISNNKFIGEI-PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLR  166 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~-~----~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~  166 (523)
                      .+|+.||+++...-...+ .    .+|+|+.|.+++-.+.... .....++++|..||+|+++++ .+ .++..+. +|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~Lk-nLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLK-NLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccc-cHH
Confidence            688999998866543222 1    1899999999887664332 334567899999999999987 45 7788887 899


Q ss_pred             EEEccCCcccc-cCCCCCCCCCCCCEEECcCCCCCCCC--C----ccccCCCCCcEEECCCCcCCCCchHhh-hcCCCCC
Q 009858          167 VLDLRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSV--P----RSLLNCANLQVLDLGNNKMKDTFPHWL-GTLRELQ  238 (523)
Q Consensus       167 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~  238 (523)
                      .|.+.+=.+.. ..-..+..|++|+.||+|........  .    +.-..+|+|+.||.|++.+.+.+-+.+ ...++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            99888766552 11123557889999999876554221  1    112357899999999888775543333 3455666


Q ss_pred             eEEec
Q 009858          239 VLILR  243 (523)
Q Consensus       239 ~L~l~  243 (523)
                      .+.+-
T Consensus       279 ~i~~~  283 (699)
T KOG3665|consen  279 QIAAL  283 (699)
T ss_pred             hhhhh
Confidence            55543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.66  E-value=3e-06  Score=80.46  Aligned_cols=277  Identities=19%  Similarity=0.152  Sum_probs=146.6

Q ss_pred             CCccEEEccCCCCccCCCCC-----CCCCcEEEccCCcC-CCcCchhh-hCCCCcCEEEccCC-cCCccChhhHhhcccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAP-----SSNMRVFLISNNKF-IGEIPRLI-CNTSTIEILDLSNN-SLSGTIPECIGNFSKS  164 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~-----~~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~~  164 (523)
                      ..|+.|.+.++.=.+.-+..     +++++.|.+.++.. +...-..+ ..+++|++|++..| .++...-..+..-.++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            35778888887655444322     78888888877753 22211222 35778888888884 4554444444444447


Q ss_pred             CcEEEccCC-ccccc-CCCCCCCCCCCCEEECcCCCCCCCCCccc----cCCCCCcEEECCCCcCCCCchHh--hhcCCC
Q 009858          165 LRVLDLRKN-RFHGT-IPETFPKGNNLTTLNFNGNELVGSVPRSL----LNCANLQVLDLGNNKMKDTFPHW--LGTLRE  236 (523)
Q Consensus       165 L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~  236 (523)
                      |++|+++++ .+++- +...+.+...++.+.+.+|.=.  .-..+    ..+.-+..+++..|.......-+  -..+..
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            888888887 34431 1112334455666655554211  11111    22334555555554322111111  123556


Q ss_pred             CCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEe
Q 009858          237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLII  316 (523)
Q Consensus       237 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  316 (523)
                      |+.|..+++...+..+.+.-....++|+.|.++++.--+.....                                    
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft------------------------------------  339 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT------------------------------------  339 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh------------------------------------
Confidence            67777666654333322222344566777766666421111100                                    


Q ss_pred             cchhHHHHHhhcccccccCCCCccCcC--cchhhcCcccCCeeeCcCCcccccC-----CccccCCCCCCEEeCCCCcCC
Q 009858          317 KRQEVKLMKILTIFTTIDLSKNSFHGE--IPELMGKLHSLRLLNLSQNILSGNI-----PSSLGDLTDLESLDLSSNVLD  389 (523)
Q Consensus       317 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~  389 (523)
                           ..-...+.|+.+++.++.....  +...-.+++.|+.|.|++|......     ...-..+..|+.+.|+++..+
T Consensus       340 -----~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  340 -----MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             -----hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence                 1112256677777777654311  2222345677888888877543211     122245677888888888765


Q ss_pred             C-cCChhhcCCCCCCeEECCCCcC
Q 009858          390 G-VIPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       390 ~-~~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      . ..-+.+..++.|+.+++-++.-
T Consensus       415 ~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  415 TDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hHHHHHHHhhCcccceeeeechhh
Confidence            3 2334456677888888777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=0.0004  Score=62.47  Aligned_cols=59  Identities=29%  Similarity=0.432  Sum_probs=26.6

Q ss_pred             CCcEEEccCCcccccCCCCCCCCCCCCEEECcCC--CCCCCCCccccCCCCCcEEECCCCcCC
Q 009858          164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGN--ELVGSVPRSLLNCANLQVLDLGNNKMK  224 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~  224 (523)
                      .|+.|++.+..++..  ..|..|++|++|.++.|  .+.+.++.-...+++|++|++++|++.
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            355555544444421  12344455555555555  333333333333455555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.80  E-value=0.004  Score=51.29  Aligned_cols=11  Identities=27%  Similarity=0.353  Sum_probs=3.3

Q ss_pred             CCCCccEEEcc
Q 009858           91 PWKNLEYLDLR  101 (523)
Q Consensus        91 ~~~~L~~L~L~  101 (523)
                      .+++|+.+.+.
T Consensus        10 ~~~~l~~i~~~   20 (129)
T PF13306_consen   10 NCSNLESITFP   20 (129)
T ss_dssp             T-TT--EEEET
T ss_pred             CCCCCCEEEEC
Confidence            33344444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.80  E-value=8.2e-05  Score=70.94  Aligned_cols=87  Identities=22%  Similarity=0.115  Sum_probs=56.6

Q ss_pred             hcccccccCCCCc-cCcCcchh-hcCcccCCeeeCcCCccccc--CCccccCCCCCCEEeCCCCcCCCcC-----Chhhc
Q 009858          327 LTIFTTIDLSKNS-FHGEIPEL-MGKLHSLRLLNLSQNILSGN--IPSSLGDLTDLESLDLSSNVLDGVI-----PRELT  397 (523)
Q Consensus       327 ~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~-----~~~l~  397 (523)
                      .++|+.+.+++++ ++..--.. -.+.+.|+.+++..+.....  +...-.+++.|+.|.|++|.+....     ...-.
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c  398 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC  398 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence            5778888888875 33211111 24568899999998865421  2222346789999999999764332     12224


Q ss_pred             CCCCCCeEECCCCcCc
Q 009858          398 RLTFLAVLNLSRNKLE  413 (523)
Q Consensus       398 ~l~~L~~L~Ls~N~l~  413 (523)
                      ++..|..+.|++++..
T Consensus       399 ~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLI  414 (483)
T ss_pred             cccccceeeecCCCCc
Confidence            5678999999999876

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.77  E-value=0.0058  Score=50.36  Aligned_cols=118  Identities=18%  Similarity=0.305  Sum_probs=59.4

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhh-HhhcccCCcEEEccCCcccccCCCCCCCCCCCCE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPEC-IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTT  191 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  191 (523)
                      +++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++.. +.... +|+.+.+.. .+.......|...++|+.
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccc-ccccccccc-cccccccccccccccccc
Confidence            55778888774 455566667888888888888775 55 44443 44443 688888865 444455567777888888


Q ss_pred             EECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCC
Q 009858          192 LNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ  238 (523)
Q Consensus       192 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  238 (523)
                      +++..+ +.......|.+. +|+.+.+.. .+.......|.++++|+
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            888765 544445567776 888888775 34434455666666553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.0018  Score=58.43  Aligned_cols=92  Identities=22%  Similarity=0.187  Sum_probs=57.1

Q ss_pred             CCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCC--cCCCCchHhhhcCCCCCeEEeccccccCcCCCcccc
Q 009858          180 PETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNN--KMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD  257 (523)
Q Consensus       180 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  257 (523)
                      ......+..|+.|++.+..++.  -..+..|++|+.|.++.|  ++.+.++-....+++|+++++++|++.. +...-..
T Consensus        36 ~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl  112 (260)
T KOG2739|consen   36 GGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPL  112 (260)
T ss_pred             ccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchh
Confidence            3334445566666666665542  134566778888888888  5555555445556888888888887653 2222233


Q ss_pred             ccCCCCcEEeccCccCC
Q 009858          258 YYFSKLRILDLSNNNFT  274 (523)
Q Consensus       258 ~~l~~L~~L~l~~n~l~  274 (523)
                      ..+.+|..|++.+|..+
T Consensus       113 ~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhcchhhhhcccCCcc
Confidence            45677778888777665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.00028  Score=63.81  Aligned_cols=76  Identities=25%  Similarity=0.225  Sum_probs=33.9

Q ss_pred             CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEECCCCcCCCCch-----HhhhcCCCC
Q 009858          164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP-RSLLNCANLQVLDLGNNKMKDTFP-----HWLGTLREL  237 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L  237 (523)
                      .|++|.|+-|+|+..-|  |..+++|+.|+|..|.|..... ..+.++++|+.|+|..|.-.+..+     ..+.-+++|
T Consensus        42 ~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnL  119 (388)
T KOG2123|consen   42 LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNL  119 (388)
T ss_pred             cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccc
Confidence            45555555555542222  3344455555555554432110 133455555555555554433322     123345555


Q ss_pred             CeEE
Q 009858          238 QVLI  241 (523)
Q Consensus       238 ~~L~  241 (523)
                      +.||
T Consensus       120 kKLD  123 (388)
T KOG2123|consen  120 KKLD  123 (388)
T ss_pred             hhcc
Confidence            5553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.00037  Score=63.00  Aligned_cols=80  Identities=21%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCc-hHhhhcCCCCCeEEe
Q 009858          164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTF-PHWLGTLRELQVLIL  242 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l  242 (523)
                      +.+.|+..+|.+.++.  ...+++.|++|.|+-|+|+..-  .+..+++|++|+|..|.|...- -..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            4556666666665431  2335566666666666665322  3445666666666666554221 122345555555555


Q ss_pred             ccccc
Q 009858          243 RSNKF  247 (523)
Q Consensus       243 ~~n~l  247 (523)
                      ..|+-
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            55543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.47  E-value=0.0047  Score=63.77  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=15.4

Q ss_pred             CCCCcEEECCCCc-CCCCchHhhhc-CCCCCeEEecccc
Q 009858          210 CANLQVLDLGNNK-MKDTFPHWLGT-LRELQVLILRSNK  246 (523)
Q Consensus       210 l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~  246 (523)
                      +++|+.|+++++. ++...-..+.. +++|+.|.+.++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            3445555555544 33222222222 4455555544443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.37  E-value=0.0062  Score=32.60  Aligned_cols=12  Identities=42%  Similarity=0.570  Sum_probs=5.3

Q ss_pred             CcEEEccCCccc
Q 009858          165 LRVLDLRKNRFH  176 (523)
Q Consensus       165 L~~L~L~~n~l~  176 (523)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.32  E-value=0.0091  Score=31.94  Aligned_cols=20  Identities=45%  Similarity=0.775  Sum_probs=13.7

Q ss_pred             CcCEEEccCCcCCccChhhHh
Q 009858          139 TIEILDLSNNSLSGTIPECIG  159 (523)
Q Consensus       139 ~L~~L~L~~n~l~~~~p~~l~  159 (523)
                      +|++||+++|+++ .+|..|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4677777777777 6776644

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.03  E-value=0.0069  Score=62.54  Aligned_cols=62  Identities=24%  Similarity=0.203  Sum_probs=27.9

Q ss_pred             CCCCcEEEccCCc-CCCcCchhhhC-CCCcCEEEccCCc-CCccChhhHhhcccCCcEEEccCCc
Q 009858          113 SSNMRVFLISNNK-FIGEIPRLICN-TSTIEILDLSNNS-LSGTIPECIGNFSKSLRVLDLRKNR  174 (523)
Q Consensus       113 ~~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~p~~l~~l~~~L~~L~L~~n~  174 (523)
                      +++|+.|+++.+. ++...-..+.. +++|+.|.+.++. +++.--..+....++|++|++++|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4555555555554 33222222222 4555555555554 3433333333322245555555543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.09  E-value=0.00051  Score=69.58  Aligned_cols=61  Identities=30%  Similarity=0.409  Sum_probs=28.7

Q ss_pred             cccccCCCCccCcC----cchhhcCc-ccCCeeeCcCCcccccC----CccccCCCCCCEEeCCCCcCCC
Q 009858          330 FTTIDLSKNSFHGE----IPELMGKL-HSLRLLNLSQNILSGNI----PSSLGDLTDLESLDLSSNVLDG  390 (523)
Q Consensus       330 L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~n~l~~  390 (523)
                      +..++++.|.+.+.    ....+..+ ..+++++++.|.++...    ...+..++.+++|.+++|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            34455555555432    11222333 44555566666555422    2233344556666666665543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.05  E-value=0.037  Score=27.42  Aligned_cols=13  Identities=54%  Similarity=0.792  Sum_probs=4.5

Q ss_pred             CcCEEEccCCcCC
Q 009858          139 TIEILDLSNNSLS  151 (523)
Q Consensus       139 ~L~~L~L~~n~l~  151 (523)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.79  E-value=0.00071  Score=68.55  Aligned_cols=87  Identities=31%  Similarity=0.335  Sum_probs=64.0

Q ss_pred             hcccccccCCCCccCcCc----chhhcCccc-CCeeeCcCCccccc----CCccccCC-CCCCEEeCCCCcCCCcC----
Q 009858          327 LTIFTTIDLSKNSFHGEI----PELMGKLHS-LRLLNLSQNILSGN----IPSSLGDL-TDLESLDLSSNVLDGVI----  392 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~----~~~~~~l~~-L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~Ls~n~l~~~~----  392 (523)
                      ..++++|.+++|.++...    ...+...++ +..|+++.|.+.+.    ....+..+ ..+++++++.|.+++.-    
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            567888999998877322    233445555 77799999988753    23345555 77899999999998653    


Q ss_pred             ChhhcCCCCCCeEECCCCcCc
Q 009858          393 PRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       393 ~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      ...+..++.++++.+++|++.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence            345567789999999999986

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.61  E-value=0.0033  Score=55.54  Aligned_cols=86  Identities=20%  Similarity=0.264  Sum_probs=52.7

Q ss_pred             hhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCC
Q 009858          134 ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL  213 (523)
Q Consensus       134 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  213 (523)
                      +......+.||++.|++. .+-..+.-+. .|..|+++.|.+. ..|..+..+..++.+++..|..+ ..|.++...+.+
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            444555566666666654 4444555554 5666666666666 55666666666666666666654 566666666667


Q ss_pred             cEEECCCCcC
Q 009858          214 QVLDLGNNKM  223 (523)
Q Consensus       214 ~~L~L~~n~l  223 (523)
                      +++++..|.+
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            6666666653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.07  E-value=0.15  Score=28.41  Aligned_cols=20  Identities=40%  Similarity=0.596  Sum_probs=10.8

Q ss_pred             CCCCEEeCCCCcCCCcCChh
Q 009858          376 TDLESLDLSSNVLDGVIPRE  395 (523)
Q Consensus       376 ~~L~~L~Ls~n~l~~~~~~~  395 (523)
                      ++|++|+|++|++....+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45566666666665443333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.07  E-value=0.15  Score=28.41  Aligned_cols=20  Identities=40%  Similarity=0.596  Sum_probs=10.8

Q ss_pred             CCCCEEeCCCCcCCCcCChh
Q 009858          376 TDLESLDLSSNVLDGVIPRE  395 (523)
Q Consensus       376 ~~L~~L~Ls~n~l~~~~~~~  395 (523)
                      ++|++|+|++|++....+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45566666666665443333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.92  E-value=0.15  Score=28.34  Aligned_cols=19  Identities=47%  Similarity=0.697  Sum_probs=9.7

Q ss_pred             CCcCEEEccCCcCCccChhh
Q 009858          138 STIEILDLSNNSLSGTIPEC  157 (523)
Q Consensus       138 ~~L~~L~L~~n~l~~~~p~~  157 (523)
                      ++|++|+|++|+++ .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555555 44444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.92  E-value=0.15  Score=28.34  Aligned_cols=19  Identities=47%  Similarity=0.697  Sum_probs=9.7

Q ss_pred             CCcCEEEccCCcCCccChhh
Q 009858          138 STIEILDLSNNSLSGTIPEC  157 (523)
Q Consensus       138 ~~L~~L~L~~n~l~~~~p~~  157 (523)
                      ++|++|+|++|+++ .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555555 44444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.25  E-value=0.01  Score=52.62  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=54.6

Q ss_pred             hhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCC
Q 009858          133 LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELV  200 (523)
Q Consensus       133 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  200 (523)
                      .|.-++.|..||++.|.+. .+|.+++... .++.+++..|..+ ..|.++...++++++++.+|.+.
T Consensus        60 n~s~~t~~~rl~~sknq~~-~~~~d~~q~~-e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   60 NFSILTRLVRLDLSKNQIK-FLPKDAKQQR-ETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             chHHHHHHHHHhccHhhHh-hChhhHHHHH-HHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            4566777888899999887 8899988887 6888898888887 78889999999999999888764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.53  E-value=0.031  Score=48.60  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=15.8

Q ss_pred             CcEEEccCCcCCCcCchhhhCCCCcCEEEccCCc
Q 009858          116 MRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS  149 (523)
Q Consensus       116 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  149 (523)
                      ++.++-++..+...--+.+.+++.++.|.+.+|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            3444444444443333344455555555555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.12  E-value=0.16  Score=27.63  Aligned_cols=16  Identities=44%  Similarity=0.702  Sum_probs=7.3

Q ss_pred             CCcCEEEccCCcCCcc
Q 009858          138 STIEILDLSNNSLSGT  153 (523)
Q Consensus       138 ~~L~~L~L~~n~l~~~  153 (523)
                      ++|++|+|++|.+++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555555433

...

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.34  E-value=0.25  Score=39.58  Aligned_cols=19  Identities=26%  Similarity=0.555  Sum_probs=9.9

Q ss_pred             eeeehhhhhHHHHHHHHHh
Q 009858          473 LMGYVCGTVFGMILGYILL  491 (523)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~  491 (523)
                      +++|+.|++++++..++++
T Consensus        66 i~~Ii~gv~aGvIg~Illi   84 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGIILLI   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHHHHHHH
Confidence            3455556666555444433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=81.23  E-value=1.7  Score=36.07  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=11.3

Q ss_pred             EeeeehhhhhHHHHHHHHHhh
Q 009858          472 VLMGYVCGTVFGMILGYILLS  492 (523)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~  492 (523)
                      +++|++.|+.+.++++++++.
T Consensus        50 IVIGvVVGVGg~ill~il~lv   70 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLGILALV   70 (154)
T ss_pred             EEEEEEecccHHHHHHHHHhh
Confidence            456666666555555444444

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	523
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-38
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-38
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-11

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 170/378 (44%), Gaps = 35/378 (9%)
Query: 98  LDLRSNLLQGPV-----PAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           LDL SN   GP+       P + ++   + NN F G+IP  + N S +  L LS N LSG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCAN 212
           TIP  +G+ SK LR L L  N   G IP+                +L G +P  L NC N
Sbjct: 430 TIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L  + L NN++    P W+G L  L +L L +N F G++     D     L  LDL+ N 
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNL 546
Query: 273 FTGSLPAMFFKNMKAMTDIGEAA--------DENKSKYMG-------ETYYEDSVTLIIK 317
           F G++PA  FK    +     A         D  K +  G       +    + +  +  
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 318 RQEVKLM-KILTIFTT-----------IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365
           R    +  ++    T+           +D+S N   G IP+ +G +  L +LNL  N +S
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 366 GNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATF 425
           G+IP                N LDG IP+ ++ LT L  ++LS N L G IPE  QF TF
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 426 SSDSYGGNLGLCGFPLSK 443
               +  N GLCG+PL +
Sbjct: 727 PPAKFLNNPGLCGYPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 170/378 (44%), Gaps = 35/378 (9%)
Query: 98  LDLRSNLLQGPV-----PAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           LDL SN   GP+       P + ++   + NN F G+IP  + N S +  L LS N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKXXXXXXXXXXXXELVGSVPRSLLNCAN 212
           TIP  +G+ SK LR L L  N   G IP+                +L G +P  L NC N
Sbjct: 433 TIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L  + L NN++    P W+G L  L +L L +N F G++     D     L  LDL+ N 
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNL 549
Query: 273 FTGSLPAMFFKNMKAMTDIGEAA--------DENKSKYMG-------ETYYEDSVTLIIK 317
           F G++PA  FK    +     A         D  K +  G       +    + +  +  
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 318 RQEVKLM-KILTIFTT-----------IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365
           R    +  ++    T+           +D+S N   G IP+ +G +  L +LNL  N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 366 GNIPXXXXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATF 425
           G+IP                N LDG IP+ ++ LT L  ++LS N L G IPE  QF TF
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 426 SSDSYGGNLGLCGFPLSK 443
               +  N GLCG+PL +
Sbjct: 730 PPAKFLNNPGLCGYPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 19/250 (7%)
Query: 203 VPRSLLNCANLQVLDLGN-NKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS 261
           +P SL N   L  L +G  N +    P  +  L +L  L +      G + D+ +     
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--IK 125
Query: 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTD-IGEAADENK-SKYMGETYYEDS---VTLII 316
            L  LD S N  +G+LP     ++ ++ + +G   D N+ S  + ++Y   S    ++ I
Sbjct: 126 TLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 317 KRQEVKLMKILTIFTT-----IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPXX 371
            R  +   KI   F       +DLS+N   G+   L G   + + ++L++N L+ ++   
Sbjct: 182 SRNRLT-GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK 239
Query: 372 XXXXXXXXXXXXXXNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYG 431
                         N + G +P+ LT+L FL  LN+S N L G IP+G     F   +Y 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 432 GNLGLCGFPL 441
            N  LCG PL
Sbjct: 300 NNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	523
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-104
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-38
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  327 bits (841), Expect = e-104
 Identities = 108/377 (28%), Positives = 156/377 (41%), Gaps = 31/377 (8%)

Query: 82  PKLLGNKKLPWKNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTS 138
           P  L N       L  L L  N L G +P      S +R   +  N   GEIP+ +    
Sbjct: 411 PPTLSN----CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466

Query: 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE 198
           T+E L L  N L+G IP  + N + +L  + L  NR  G IP+   +  NL  L  + N 
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

Query: 199 LVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY 258
             G++P  L +C +L  LDL  N    T P  +          + +N   G    Y  + 
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKND 581

Query: 259 YFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKR 318
              K      +   F G       +                   +      +  + +   
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNR-------------------LSTRNPCNITSRVYGG 622

Query: 319 QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDL 378
                         +D+S N   G IP+ +G +  L +LNL  N +SG+IP  +GDL  L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

Query: 379 ESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCG 438
             LDLSSN LDG IP+ ++ LT L  ++LS N L G IPE  QF TF    +  N GLCG
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

Query: 439 FPLSKNCSNDEPPQSSS 455
           +PL +   ++    +  
Sbjct: 743 YPLPRCDPSNADGYAHH 759

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  250 bits (641), Expect = 7e-75
 Identities = 99/331 (29%), Positives = 139/331 (41%), Gaps = 50/331 (15%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNM---RVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
             L++LD+  N L G      S     ++  IS+N+F+G IP L     +++ L L+ N 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENK 280

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL- 208
            +G IP+ +     +L  LDL  N F+G +P  F   + L +L  + N   G +P   L 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLR-ELQVLILRSNKFYGHLRDYEADYYFSKLRILD 267
               L+VLDL  N+     P  L  L   L  L L SN F G +         + L+ L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 268 LSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL 327
           L NN FTG +P     N   +                                       
Sbjct: 401 LQNNGFTGKIPP-TLSNCSEL--------------------------------------- 420

Query: 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNV 387
               ++ LS N   G IP  +G L  LR L L  N+L G IP  L  +  LE+L L  N 
Sbjct: 421 ---VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 388 LDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           L G IP  L+  T L  ++LS N+L G IP+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  243 bits (623), Expect = 3e-72
 Identities = 106/331 (32%), Positives = 148/331 (44%), Gaps = 51/331 (15%)

Query: 93  KNLEYLDLRSNLLQGPVPA--PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
            NLE+LD+ SN     +P     S ++   IS NK  G+  R I   + +++L++S+N  
Sbjct: 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN--NLTTLNFNGNELVGSVPRSLL 208
            G IP       KSL+ L L +N+F G IP+    G    LT L+ +GN   G+VP    
Sbjct: 260 VGPIPPLP---LKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 209 NCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILD 267
           +C+ L+ L L +N      P   L  +R L+VL L  N+F G L +       + L  LD
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLD 374

Query: 268 LSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL 327
           LS+NNF+G +     +N                                           
Sbjct: 375 LSSNNFSGPILPNLCQNP-----------------------------------------K 393

Query: 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNV 387
                + L  N F G+IP  +     L  L+LS N LSG IPSSLG L+ L  L L  N+
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 388 LDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           L+G IP+EL  +  L  L L  N L G IP 
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  235 bits (601), Expect = 5e-69
 Identities = 98/330 (29%), Positives = 142/330 (43%), Gaps = 51/330 (15%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS-SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             L++L +  N + G V      N+    +S+N F   IP  + + S ++ LD+S N LS
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-NC 210
           G     I   +  L++L++  N+F G IP       +L  L+   N+  G +P  L   C
Sbjct: 237 GDFSRAISTCT-ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
             L  LDL  N      P + G+   L+ L L SN F G L   +       L++LDLS 
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-PMDTLLKMRGLKVLDLSF 352

Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330
           N F+G LP                                S +L                
Sbjct: 353 NEFSGELPESLTNL--------------------------SASL---------------- 370

Query: 331 TTIDLSKNSFHGEIPELMGK--LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL 388
            T+DLS N+F G I   + +   ++L+ L L  N  +G IP +L + ++L SL LS N L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 389 DGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
            G IP  L  L+ L  L L  N LEG IP+
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  224 bits (572), Expect = 5e-65
 Identities = 87/345 (25%), Positives = 148/345 (42%), Gaps = 61/345 (17%)

Query: 82  PKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLICN- 136
           P   G+       LE L L SN   G +P  +      ++V  +S N+F GE+P  + N 
Sbjct: 311 PPFFGS----CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

Query: 137 TSTIEILDLSNNSLSGTIPECIGNFSK-SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFN 195
           ++++  LDLS+N+ SG I   +    K +L+ L L+ N F G IP T    + L +L+ +
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 196 GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255
            N L G++P SL + + L+ L L  N ++   P  L  ++ L+ LIL  N   G +    
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI 315
           ++   + L  + LSNN  TG +P  +   ++ +                           
Sbjct: 487 SN--CTNLNWISLSNNRLTGEIPK-WIGRLENL--------------------------- 516

Query: 316 IKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDL 375
                            + LS NSF G IP  +G   SL  L+L+ N+ +G IP+++   
Sbjct: 517 ---------------AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 376 TDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN--KLEGRIPE 418
               S  +++N + G     +         + + N  + +G   E
Sbjct: 562 ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  222 bits (567), Expect = 2e-64
 Identities = 99/337 (29%), Positives = 138/337 (40%), Gaps = 62/337 (18%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS------SNMRVFLISNNKFIGEIPRLICNTSTIEILDLS 146
            +LE LDL +N + G              ++   IS NK  G++   +     +E LD+S
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208

Query: 147 NNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRS 206
           +N+ S  IP  +G+ S +L+ LD+  N+  G           L  LN + N+ VG +P  
Sbjct: 209 SNNFSTGIPF-LGDCS-ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 207 LLNCANLQVLDLGNNKMKDTFPHWL-GTLRELQVLILRSNKFYGHL-RDYEADYYFSKLR 264
                +LQ L L  NK     P +L G    L  L L  N FYG +   +      S L 
Sbjct: 267 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSLLE 321

Query: 265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM 324
            L LS+NNF+G LP      M+ +                                    
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLK----------------------------------- 346

Query: 325 KILTIFTTIDLSKNSFHGEIPELMGKLH-SLRLLNLSQNILSGNIPSSLGD--LTDLESL 381
                   +DLS N F GE+PE +  L  SL  L+LS N  SG I  +L       L+ L
Sbjct: 347 -------VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 382 DLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
            L +N   G IP  L+  + L  L+LS N L G IP 
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  221 bits (566), Expect = 4e-64
 Identities = 91/335 (27%), Positives = 134/335 (40%), Gaps = 59/335 (17%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS-----SNMRVFLISNNKFIGEIPR-LICNTSTIEILDLS 146
            +L  LDL  N L GPV   +     S ++   +S+N              +++E+LDLS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 147 NNSLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP 204
            NS+SG              L+ L +  N+  G +     +  NL  L+ + N     +P
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217

Query: 205 RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR 264
             L +C+ LQ LD+  NK+   F   + T  EL++L + SN+F G +           L+
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PPLPLKSLQ 272

Query: 265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM 324
            L L+ N FTG +P         +T                                   
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLT----------------------------------- 297

Query: 325 KILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP-SSLGDLTDLESLDL 383
                   +DLS N F+G +P   G    L  L LS N  SG +P  +L  +  L+ LDL
Sbjct: 298 -------GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 384 SSNVLDGVIPRELTRLTF-LAVLNLSRNKLEGRIP 417
           S N   G +P  LT L+  L  L+LS N   G I 
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  218 bits (557), Expect = 7e-63
 Identities = 91/335 (27%), Positives = 144/335 (42%), Gaps = 59/335 (17%)

Query: 93  KNLEYLDLRSNLLQGPVPA--PSSNMRVFLISNNKFIGEIPRL--ICNTSTIEILDLSNN 148
             LE L L ++ + G V     S+++    +S N   G +  L  + + S ++ L++S+N
Sbjct: 77  TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136

Query: 149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNN---LTTLNFNGNELVGSVPR 205
           +L        G    SL VLDL  N   G     +   +    L  L  +GN++ G V  
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
            +  C NL+ LD+ +N      P +LG    LQ L +  NK  G      +    ++L++
Sbjct: 196 -VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIST--CTELKL 251

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           L++S+N F G +P +  K++                                        
Sbjct: 252 LNISSNQFVGPIPPLPLKSL---------------------------------------- 271

Query: 326 ILTIFTTIDLSKNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLS 384
                  + L++N F GEIP  L G   +L  L+LS N   G +P   G  + LESL LS
Sbjct: 272 -----QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 385 SNVLDGVIPRE-LTRLTFLAVLNLSRNKLEGRIPE 418
           SN   G +P + L ++  L VL+LS N+  G +PE
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  193 bits (492), Expect = 9e-54
 Identities = 80/334 (23%), Positives = 122/334 (36%), Gaps = 65/334 (19%)

Query: 98  LDLRSNLLQGPVPAPSS------NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
           +DL S  L     A SS       +    +SN+   G +      ++++  LDLS NSLS
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLS 113

Query: 152 GTIPE--CIGNFSKSLRVLDLRKNRFHGTIP-ETFPKGNNLTTLNFNGNELVGSVPRSLL 208
           G +     +G+ S  L+ L++  N            K N+L  L+ + N + G+     +
Sbjct: 114 GPVTTLTSLGSCS-GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 209 ---NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
               C  L+ L +  NK+       +     L+ L + SN F   +         S L+ 
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLG---DCSALQH 227

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           LD+S N  +G                                                  
Sbjct: 228 LDISGNKLSGDFSRAIST------------------------------------------ 245

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSL-GDLTDLESLDLS 384
             T    +++S N F G IP     L SL+ L+L++N  +G IP  L G    L  LDLS
Sbjct: 246 -CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
            N   G +P      + L  L LS N   G +P 
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  184 bits (469), Expect = 1e-50
 Identities = 69/291 (23%), Positives = 118/291 (40%), Gaps = 57/291 (19%)

Query: 135 CNTSTIEILDLSNNSLS---GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTT 191
           C    +  +DLS+  L+     +   + + +  L  L L  +  +G++   F    +LT+
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLT-GLESLFLSNSHINGSVSG-FKCSASLTS 104

Query: 192 LNFNGNELVGSVP--RSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFY 248
           L+ + N L G V    SL +C+ L+ L++ +N +           L  L+VL L +N   
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 249 GHL-RDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
           G     +       +L+ L +S N  +G +      N+                      
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---------------------- 202

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
                                    +D+S N+F   IP L G   +L+ L++S N LSG+
Sbjct: 203 -----------------------EFLDVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGD 238

Query: 368 IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
              ++   T+L+ L++SSN   G IP     L  L  L+L+ NK  G IP+
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 3e-12
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 349 GKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408
            K+ S+ L +   N+    + SSL  LT LESL LS++ ++G +         L  L+LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 409 RNKLEGRIPEGNQFATFSS 427
           RN L G +       + S 
Sbjct: 109 RNSLSGPVTTLTSLGSCSG 127

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  239 bits (612), Expect = 3e-75
 Identities = 82/335 (24%), Positives = 124/335 (37%), Gaps = 65/335 (19%)

Query: 122 SNNKFIGEIPRLICNTSTIEILDLSNNSLSGT--IPECIGNFSKSLRVLDLRK-NRFHGT 178
            N  ++G +      T  +  LDLS  +L     IP  + N    L  L +   N   G 
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGP 92

Query: 179 IPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ 238
           IP    K   L  L      + G++P  L     L  LD   N +  T P  + +L  L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 239 VLILRSNKF-------YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDI 291
            +    N+        YG                + +S N  TG +P  F  N+      
Sbjct: 153 GITFDGNRISGAIPDSYGSFS--------KLFTSMTISRNRLTGKIPPTFA-NLN----- 198

Query: 292 GEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKL 351
                                                    +DLS+N   G+   L G  
Sbjct: 199 --------------------------------------LAFVDLSRNMLEGDASVLFGSD 220

Query: 352 HSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNK 411
            + + ++L++N L+ ++   +G   +L  LDL +N + G +P+ LT+L FL  LN+S N 
Sbjct: 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 412 LEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCS 446
           L G IP+G     F   +Y  N  LCG PL   C+
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (397), Expect = 9e-44
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 9/191 (4%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMR---VFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
             L YL +    + G +P   S ++       S N   G +P  I +   +  +    N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN-NLTTLNFNGNELVGSVPRSLL 208
           +SG IP+  G+FSK    + + +NR  G IP TF   N NL  ++ + N L G       
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFG 218

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDL 268
           +  N Q + L  N +       +G  + L  L LR+N+ YG L           L  L++
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNV 275

Query: 269 SNNNFTGSLPA 279
           S NN  G +P 
Sbjct: 276 SFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (328), Expect = 4e-34
 Identities = 51/233 (21%), Positives = 81/233 (34%), Gaps = 50/233 (21%)

Query: 190 TTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK--MKDTFPHWLGTLRELQVLILRS-NK 246
            T +      +G +  +      +  LDL           P  L  L  L  L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 247 FYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET 306
             G +    A    ++L  L +++ N +G++P            + +             
Sbjct: 89  LVGPIPPAIAK--LTQLHYLYITHTNVSGAIPD----------FLSQ------------- 123

Query: 307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG 366
                               +    T+D S N+  G +P  +  L +L  +    N +SG
Sbjct: 124 --------------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 367 NIPSSLGDLTDL-ESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
            IP S G  + L  S+ +S N L G IP     L  LA ++LSRN LEG    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  109 bits (276), Expect = 5e-27
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 82  PKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLI--SNNKFIGEIPRLICNTST 139
           P   G+     K    + +  N L G +P   +N+ +  +  S N   G+   L  +   
Sbjct: 166 PDSYGSFS---KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL 199
            + + L+ NSL+  + + +G  SK+L  LDLR NR +GT+P+   +   L +LN + N L
Sbjct: 223 TQKIHLAKNSLAFDLGK-VGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 200 VGSVPRSLLNCANLQVLDLGNNK 222
            G +P    N     V    NNK
Sbjct: 281 CGEIP-QGGNLQRFDVSAYANNK 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  206 bits (526), Expect = 4e-59
 Identities = 65/372 (17%), Positives = 124/372 (33%), Gaps = 33/372 (8%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS------------SNMRVFLISNNKFIGEIPRLICNTSTI 140
            N+ YL+L+ +  +  +   S              +    + +N   G    +      +
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 141 EILDLSNNSLSGTIPE---CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGN 197
           + L LSN+  S         +      L +L+L KN+      + F    +L  L+   N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 198 ELVGSVPRSLL-NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEA 256
           E+   +         N+  + L  NK      +    +  LQ L+LR             
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLII 316
                 L ILDLSNNN    +     + ++ +  +           +             
Sbjct: 476 FQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEIL----------DLQHNNLARLWKHAN 524

Query: 317 KRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT 376
               +  +K L+    ++L  N F     E+   L  L++++L  N L+    S   +  
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 377 DLESLDLSSNVLDGVIPREL-TRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLG 435
            L+SL+L  N++  V  +        L  L++  N  +        F  + ++++     
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644

Query: 436 L-----CGFPLS 442
           L     C  P  
Sbjct: 645 LSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (459), Expect = 1e-49
 Identities = 66/352 (18%), Positives = 125/352 (35%), Gaps = 32/352 (9%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNM-----RVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
           +NL+ L L +N +Q               +   +S+N+     P        +  L L+N
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 148 NSLSGTIPE--CIGNFSKSLRVLDLRKNRFHGTIPETFP--KGNNLTTLNFNGNELVGSV 203
             L  ++ E  C+   + S+R L L  ++   T   TF   K  NLT L+ + N L    
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 204 PRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR-------DYEA 256
             S      L+   L  N ++  F H L  L  ++ L L+ +     +        D  +
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLII 316
             +   L  L++ +N+  G + +  F  +  +  +      + +          S+  + 
Sbjct: 325 FQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLS--LSNSFT----------SLRTLT 371

Query: 317 KRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP-SSLGDL 375
               V L    +    ++L+KN       +    L  L +L+L  N +   +       L
Sbjct: 372 NETFVSL--AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 376 TDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
            ++  + LS N    +       +  L  L L R  L+      + F    +
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (437), Expect = 1e-46
 Identities = 65/355 (18%), Positives = 117/355 (32%), Gaps = 41/355 (11%)

Query: 94  NLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
            L  LD+  N +    P        ++V  + +N+      +     + +  L L +NS+
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR--SLL 208
                        +L  LDL  N    T   T  +  NL  L  + N++         + 
Sbjct: 110 QKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL-RDYEADYYFSKLRILD 267
             ++L+ L+L +N++K+  P     +  L  L L + +    L      +   + +R L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 268 LSNNNFTGSLPAMFFKNMKAMT----DIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
           LSN+  +       F  +K       D+      N                 +       
Sbjct: 229 LSNSQLST-TSNTTFLGLKWTNLTMLDL----SYNN----------------LNVVGNDS 267

Query: 324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNI---------PSSLGD 374
              L       L  N+        +  L ++R LNL ++    +I           S   
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 375 LTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDS 429
           L  LE L++  N + G+     T L  L  L+LS +    R      F + +   
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  167 bits (425), Expect = 4e-45
 Identities = 78/363 (21%), Positives = 127/363 (34%), Gaps = 22/363 (6%)

Query: 94  NLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           + E  D     L   VP    +N+ V  +++N+            S +  LD+  N++S 
Sbjct: 5   SHEVADCSHLKLTQ-VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
             PE        L+VL+L+ N       +TF    NLT L+   N +        +   N
Sbjct: 64  LEPELCQKLPM-LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L  LDL +N +  T       L  LQ L+L +NK      +    +  S L+ L+LS+N 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
                P   F  +  +  +          ++       S+T     +++ L    T    
Sbjct: 183 IKEFSPGC-FHAIGRLFGL----------FLNNVQLGPSLT-----EKLCLELANTSIRN 226

Query: 333 IDLSKNSFHGEIPELMGKLH--SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
           + LS +            L   +L +L+LS N L+     S   L  LE   L  N +  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEP 450
           +    L  L  +  LNL R+  +  I            S+     L    +  N      
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSI-SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 451 PQS 453
              
Sbjct: 346 SNM 348

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  160 bits (407), Expect = 1e-42
 Identities = 70/339 (20%), Positives = 114/339 (33%), Gaps = 49/339 (14%)

Query: 93  KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
            NL  L L SN +Q     P     N+    +S+N               ++ L LSNN 
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 150 LSGTIPECIGNFS-KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL- 207
           +     E +  F+  SL+ L+L  N+     P  F     L  L  N  +L  S+   L 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 208 --LNCANLQVLDLGNNKMKDTFPHWLGTLR--ELQVLILRSNKFYGHLRDYEADYYFSKL 263
             L   +++ L L N+++  T       L+   L +L L  N       D  +  +  +L
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND--SFAWLPQL 274

Query: 264 RILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
               L  NN    L +     +                                   V+ 
Sbjct: 275 EYFFLEYNNIQH-LFSHSLHGLF---------------------------------NVRY 300

Query: 324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDL 383
           + +   FT   +S  S           L  L  LN+  N + G   +    L +L+ L L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 384 SSNVLDGVIPRELT----RLTFLAVLNLSRNKLEGRIPE 418
           S++          T      + L +LNL++NK+     +
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  155 bits (394), Expect = 6e-41
 Identities = 69/386 (17%), Positives = 119/386 (30%), Gaps = 71/386 (18%)

Query: 90  LPWKNLEYLDLRSNLLQGPVPA-----PSSNMRVFLISNNKFIGEIPRLICNTSTIEILD 144
           L   ++  L L ++ L             +N+ +  +S N               +E   
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 145 LSNNSLSGTIPECIGNFSKSLRVLDLRKN---------RFHGTIPETFPKGNNLTTLNFN 195
           L  N++       +     ++R L+L+++                 +F     L  LN  
Sbjct: 279 LEYNNIQHLFSHSLHGLF-NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 196 GNELVGSVPRSLLNCANLQVLDLGNNKMK------DTFPHWLGTLRELQVLILRSNKFYG 249
            N++ G          NL+ L L N+         +TF         L +L L  NK   
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISK 395

Query: 250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYE 309
                +A  +   L +LDL  N     L    ++ ++ +                     
Sbjct: 396 IES--DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI--------------------- 432

Query: 310 DSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG--N 367
                                  I LS N +          + SL+ L L +  L    +
Sbjct: 433 ---------------------FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 368 IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
            PS    L +L  LDLS+N +  +    L  L  L +L+L  N L  R+ + +       
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-RLWK-HANPGGPI 529

Query: 428 DSYGGNLGLCGFPLSKNCSNDEPPQS 453
               G   L    L  N  ++ P + 
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  141 bits (358), Expect = 4e-36
 Identities = 61/311 (19%), Positives = 100/311 (32%), Gaps = 52/311 (16%)

Query: 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172
           + +  V   S+ K + ++P  +   + I +L+L++N L          +S+ L  LD+  
Sbjct: 3   TVSHEVADCSHLK-LTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQ-LTSLDVGF 58

Query: 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLG 232
           N      PE   K   L  LN   NEL     ++   C NL  L L +N ++    +   
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 233 TLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIG 292
             + L  L L  N                 L+ L LSNN     L +             
Sbjct: 119 KQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQA-LKSEELDIFA------ 169

Query: 293 EAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLH 352
                                              +    ++LS N      P     + 
Sbjct: 170 ----------------------------------NSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 353 SLRLLNLSQNILSGNIPSSLGD---LTDLESLDLSSNVLDGVIPRELT--RLTFLAVLNL 407
            L  L L+   L  ++   L      T + +L LS++ L           + T L +L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 408 SRNKLEGRIPE 418
           S N L     +
Sbjct: 256 SYNNLNVVGND 266

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  166 bits (423), Expect = 6e-45
 Identities = 48/365 (13%), Positives = 97/365 (26%), Gaps = 86/365 (23%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             L    + ++         +           +          N   +  +++ N     
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENE--NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 153 TIPECIGNFSKSLRVLDLRKNRFH--------GTIPETFPKGNNLTTLNFNGNEL-VGSV 203
            +P  +      ++++++  NR                 P G  +  +    N L    V
Sbjct: 264 KLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 204 PRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF-------YGHLRDYEA 256
             SL     L +L+   N+++   P   G+  +L  L L  N+         G       
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFT----- 376

Query: 257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLII 316
                ++  L  ++N           K++  M+                           
Sbjct: 377 ----EQVENLSFAHNKLKYIPNIFDAKSVSVMS--------------------------- 405

Query: 317 KRQEVKLMKILTIFTTIDLSKNSFHG-------EIPELMGKLHSLRLLNLSQNILSGNIP 369
                           ID S N            +     K  ++  +NLS N +S    
Sbjct: 406 ---------------AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 370 SSLGDLTDLESLDLSSNVLDGV-------IPRELTRLTFLAVLNLSRNKLEGRIPEGNQF 422
                 + L S++L  N+L  +                 L  ++L  NKL   + +  + 
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRA 509

Query: 423 ATFSS 427
            T   
Sbjct: 510 TTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (421), Expect = 1e-44
 Identities = 52/352 (14%), Positives = 108/352 (30%), Gaps = 75/352 (21%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSS-----NMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
           + ++ + +  N L+   P  +S      + +     N+  G++P    +   +  L+L+ 
Sbjct: 305 EKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAY 362

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN--NLTTLNFNGNELVG---- 201
           N ++  IP     F++ +  L    N+    IP  F   +   ++ ++F+ NE+      
Sbjct: 363 NQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 202 ---SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY 258
               +  +     N+  ++L NN++         T   L  + L  N      ++   D 
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 259 YFS-----KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVT 313
             +      L  +DL  N  T          +  +                         
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV------------------------ 516

Query: 314 LIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI------LSGN 367
                              IDLS NSF    P       +L+   +              
Sbjct: 517 ------------------GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 368 IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
            P  +     L  L + SN +   +  ++     ++VL++  N         
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (371), Expect = 5e-38
 Identities = 51/359 (14%), Positives = 107/359 (29%), Gaps = 80/359 (22%)

Query: 93  KNLEYLDLRSNLLQGPVPA---PSSNMRVFLISNNKFI--------GEIPRLICNTSTIE 141
           K+L  +++ +      +P        M++  ++ N+ I         +          I+
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 142 ILDLSNNSL-SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELV 200
           I+ +  N+L +  +   +    K L +L+   N+  G +P  F     L +LN   N++ 
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKK-LGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT 366

Query: 201 GSVPRSLLNCANLQVLDLGNNKMKDTFPHWL--GTLRELQVLILRSNKFYGHLRDY---- 254
                       ++ L   +NK+K   P+     ++  +  +    N+            
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 255 -EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVT 313
               +    +  ++LSNN  +     +F                                
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFST------------------------------ 455

Query: 314 LIIKRQEVKLMKILTIFTTIDLSKNSFHG-------EIPELMGKLHSLRLLNLSQNILSG 366
                         +  ++I+L  N           +  E     + L  ++L  N L+ 
Sbjct: 456 -------------GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 367 NIPS-SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL------NLSRNKLEGRIPE 418
                    L  L  +DLS N      P +    + L         +   N+     PE
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (353), Expect = 1e-35
 Identities = 36/313 (11%), Positives = 89/313 (28%), Gaps = 67/313 (21%)

Query: 121 ISNNKFIGEIPRLICNTSTIEILDLSNNSLSG----TIPECIGNFSKSLRVLDLRKNRFH 176
           +      G +P  I   + +E+L L ++          P+ I   + S       +  + 
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA-NMSDEQKQKMRMHYQ 146

Query: 177 GTIPETFPKGN--NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTL 234
            T  +  P+ +  +L     N +    S+ +S         +   +N +       +  L
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRL 205

Query: 235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEA 294
            +L+   + ++ F                   +        +    +             
Sbjct: 206 TKLRQFYMGNSPFVAENI-------CEAWENENSEYAQQYKTEDLKWDN----------- 247

Query: 295 ADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSL 354
                                           L   T +++       ++P  +  L  +
Sbjct: 248 --------------------------------LKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 355 RLLNLSQN--------ILSGNIPSSLGDLTDLESLDLSSNVL-DGVIPRELTRLTFLAVL 405
           +L+N++ N               +       ++ + +  N L    +   L ++  L +L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 406 NLSRNKLEGRIPE 418
               N+LEG++P 
Sbjct: 336 ECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (304), Expect = 3e-29
 Identities = 32/304 (10%), Positives = 73/304 (24%), Gaps = 79/304 (25%)

Query: 136 NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKG----NNLTT 191
           +   +  L L     SG +P+ IG  +  L VL L  +          PKG     +   
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 192 LNFNGNELVGSVPRSL--LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY- 248
                     +        + ++L    + ++  + +         +   +   SN    
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 249 -----GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYM 303
                  L         +KLR   + N+ F                              
Sbjct: 198 VSKAVMRL---------TKLRQFYMGNSPFVAENI------------------------- 223

Query: 304 GETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI 363
                                     +   +      +         L  L  + +    
Sbjct: 224 -----------------------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 364 LSGNIPSSLGDLTDLESLDLSSNVL--------DGVIPRELTRLTFLAVLNLSRNKL-EG 414
               +P+ L  L +++ ++++ N          D     +      + ++ +  N L   
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 415 RIPE 418
            +  
Sbjct: 321 PVET 324

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 9e-22
 Identities = 30/213 (14%), Positives = 62/213 (29%), Gaps = 46/213 (21%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKF-------IGEIPRLICNTSTIEI 142
            N+  ++L +N +        +  S +    +  N         + +      NT  +  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL------NFNG 196
           +DL  N L+    +        L  +DL  N F    P      + L         +  G
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEA 256
           N  +   P  +  C +L  L +G+N ++      +                         
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI------------------------- 585

Query: 257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMT 289
                 + +LD+ +N       +     ++A  
Sbjct: 586 ---TPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.2 bits (214), Expect = 5e-18
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 24/172 (13%)

Query: 93  KNLEYLDLRSNLLQG-----PVPAPSS-----NMRVFLISNNKFIGEIPR--LICNTSTI 140
             L  ++L  N+L             +      +    +  NK + ++           +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYL 515

Query: 141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLR------KNRFHGTIPETFPKGNNLTTLNF 194
             +DLS NS S   P    N S +L+   +R       NR     PE      +LT L  
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSS-TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
             N++   V   +    N+ VLD+ +N        ++    E  + +L  +K
Sbjct: 574 GSNDIR-KVNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.8 bits (205), Expect = 7e-17
 Identities = 25/260 (9%), Positives = 56/260 (21%), Gaps = 64/260 (24%)

Query: 181 ETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL 240
                G N    N   +        SL +   +  L L         P  +G L EL+VL
Sbjct: 52  FGTQPGANWNF-NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 241 ILRSNKFYGHLRDYEAD--YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN 298
            L S+    + R +                   ++  +      +               
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE-------------- 156

Query: 299 KSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLN 358
                                        +      ++ +     I +          + 
Sbjct: 157 ---------------------------DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 359 LSQNILSGNIPSSLGDLTDLESLDLSSNVLDG-------------------VIPRELTRL 399
              N ++  +  ++  LT L    + ++                           +   L
Sbjct: 190 QLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 400 TFLAVLNLSRNKLEGRIPEG 419
             L  + +       ++P  
Sbjct: 249 KDLTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 17/130 (13%)

Query: 93  KNLEYLDLRSNLLQG--PVPAPSSNMRVF------LISNNKFIGEIPRLICNTSTIEILD 144
             L  +DL  N        P  SS ++ F          N+ + E P  I    ++  L 
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 145 LSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP 204
           + +N +   + E     + ++ VLD++ N                       ++      
Sbjct: 573 IGSNDIR-KVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK-----T 623

Query: 205 RSLLNCANLQ 214
           + +  C  L 
Sbjct: 624 QDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 21/149 (14%), Positives = 41/149 (27%), Gaps = 11/149 (7%)

Query: 311 SVTLIIKRQEVKLMKIL-TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP 369
            + L    + +K    L  I+  ++    S  G   +     +  + L++          
Sbjct: 19  PIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMW----GAQPG 74

Query: 370 SSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDS 429
            SL     +  L L      G +P  + +LT L VL L  +  +           F    
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER------LFGPKG 128

Query: 430 YGGNLGLCGFPLSKNCSNDEPPQSSSVLE 458
              N+        +              +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPRED 157

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  160 bits (407), Expect = 6e-43
 Identities = 64/328 (19%), Positives = 106/328 (32%), Gaps = 76/328 (23%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS-- 151
             ++L+L +            +++    ++NK          +  ++E LDLS N LS  
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK 362

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-NC 210
           G   +     + SL+ LDL  N    T+   F     L  L+F  + L      S+  + 
Sbjct: 363 GCCSQSDFGTT-SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
            NL  LD+ +   +  F      L                          S L +L ++ 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGL--------------------------SSLEVLKMAG 454

Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330
           N+F  +     F  ++ +T                                         
Sbjct: 455 NSFQENFLPDIFTELRNLT----------------------------------------- 473

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
             +DLS+       P     L SL++LN+S N            L  L+ LD S N +  
Sbjct: 474 -FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 391 VIPRELTRL-TFLAVLNLSRNKLEGRIP 417
              +EL    + LA LNL++N       
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (382), Expect = 1e-39
 Identities = 55/343 (16%), Positives = 108/343 (31%), Gaps = 48/343 (13%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVF------------LISNNKFIGEIPRLICNTSTI 140
             LE   L     +        +                L   + ++ +I  L    + +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELV 200
               L + ++         +++   + L+L   +F             LT  +  G    
Sbjct: 285 SSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-- 339

Query: 201 GSVPRSLLNCANLQVLDLGNNKM--KDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY 258
                S ++  +L+ LDL  N +  K            L+ L L  N       ++    
Sbjct: 340 ---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-- 394

Query: 259 YFSKLRILDLSNNNFTGSLPAMFFKNMKAMT--DIGEAADENKSKYMGETYYEDSVTLII 316
              +L  LD  ++N         F +++ +   DI                      +  
Sbjct: 395 -LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH----TH------------TRVAF 437

Query: 317 KRQEVKLMKILTIFTTIDLSKNSFHGEI-PELMGKLHSLRLLNLSQNILSGNIPSSLGDL 375
                 L  +      + ++ NSF     P++  +L +L  L+LSQ  L    P++   L
Sbjct: 438 NGIFNGLSSL----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 376 TDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           + L+ L++S N    +       L  L VL+ S N +     +
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  149 bits (377), Expect = 7e-39
 Identities = 50/327 (15%), Positives = 105/327 (32%), Gaps = 23/327 (7%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNM---RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
           + + LDL  N L+        +    +V  +S  +          + S +  L L+ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG-SVPRSLLN 209
                      S SL+ L   +                L  LN   N +    +P    N
Sbjct: 89  QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD-YYFSKLRILDL 268
             NL+ LDL +NK++  +   L  L ++ +L L  +     +   +   +   +L  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
            NN  + ++     + +  +        E ++               +++ +   ++ L 
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------------EGNLEKFDKSALEGLC 255

Query: 329 IFTTIDLSKNS---FHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
             T  +        +  +I +L   L ++   +L    +      S       + L+L +
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVN 313

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKL 412
                    +L  L  L   +      
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  146 bits (370), Expect = 5e-38
 Identities = 63/346 (18%), Positives = 111/346 (32%), Gaps = 26/346 (7%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNM---RVFLISNNKFIG-EIPRLICNTSTIEILDLSNN 148
            +L+ L      L      P  ++   +   +++N     ++P    N + +E LDLS+N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 149 SLSGTIPECIGNFSK---SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
            +       +    +       LDL  N  +   P  F K   L  L    N    +V +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMK 218

Query: 206 SLL-NCANLQVLDL------GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRD-YEAD 257
           + +   A L+V  L          ++      L  L  L +   R      +L D  +  
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 258 YYFSKLRILDLSNNNFTGSLPAMFFKNMKA--MTDIGEAADENKSKYMGETYYEDSVTLI 315
              + +    L +          +    +   + +              +     S    
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 316 IKRQEVKLMKILTIFTTIDLSKN--SFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG 373
               EV L  +      +DLS+N  SF G   +      SL+ L+LS N +   + S+  
Sbjct: 339 NAFSEVDLPSL----EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393

Query: 374 DLTDLESLDLSSNVLDGVIPRE-LTRLTFLAVLNLSRNKLEGRIPE 418
            L  LE LD   + L  +        L  L  L++S          
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (351), Expect = 2e-35
 Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 54/303 (17%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSS-----NMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
            +LE+LDL  N L        S     +++   +S N  I  +         +E LD  +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
           ++L       +    ++L  LD+            F   ++L  L   GN    +    +
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 208 L-NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRIL 266
                NL  LDL   +++   P    +L  LQVL +  N F+            + L++L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--PYKCLNSLQVL 523

Query: 267 DLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI 326
           D S N+   S          ++                                      
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSL-------------------------------------- 545

Query: 327 LTIFTTIDLSKNSFHGEIP--ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLS 384
                 ++L++N F         +  +   R L +    +    PS    +  + SL+++
Sbjct: 546 ----AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

Query: 385 SNV 387
             +
Sbjct: 601 CQM 603

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (347), Expect = 7e-35
 Identities = 61/353 (17%), Positives = 105/353 (29%), Gaps = 38/353 (10%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLICN----TSTIEILD 144
           K L+ L++  NL+Q           +N+    +S+NK        +            LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 145 LSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKG-NNLTTLN------FNGN 197
           LS N ++   P         L  L LR N     + +T  +G   L           N  
Sbjct: 184 LSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 198 ELVGSVPRSLLNCANLQVLDLGNNKMKDTF---PHWLGTLRELQVLILRSNKFYGHLRDY 254
            L      +L    NL + +     +             L  +    L S      +   
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT----IERV 297

Query: 255 EADYYFSKLRILDLSNNNFTGSLPAMFFKNMK-------AMTDIGEAADENKSKYMGETY 307
           +   Y    + L+L N  F    P +  K++K          +     D    +++  + 
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
              S      + +     +      +DLS N     +      L  L  L+   + L   
Sbjct: 357 NGLSFKGCCSQSDFGTTSL----KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 368 IPSS-LGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
              S    L +L  LD+S              L+ L VL ++ N  +      
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  131 bits (331), Expect = 9e-33
 Identities = 58/343 (16%), Positives = 107/343 (31%), Gaps = 44/343 (12%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
            +L  L L  N +Q       +  S+++  +             I +  T++ L++++N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 150 L-SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT----TLNFNGNELVGSVP 204
           + S  +PE   N + +L  LDL  N+            + +     +L+ + N +   + 
Sbjct: 136 IQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQ 193

Query: 205 RSLLNCANLQVLDLGNNKMK-DTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD-YYFSK 262
                   L  L L NN    +     +  L  L+V  L   +F       + D      
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 263 LRILDLSNN-----NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIK 317
           L  L +        ++        F  +  ++                +    ++  +  
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF--------------SLVSVTIERVKD 299

Query: 318 RQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD 377
                       +  ++L    F       +  L  L   +       G    S  DL  
Sbjct: 300 FSY------NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPS 348

Query: 378 LESLDLSSNVLD--GVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           LE LDLS N L   G   +     T L  L+LS N +      
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (323), Expect = 1e-31
 Identities = 56/349 (16%), Positives = 111/349 (31%), Gaps = 43/349 (12%)

Query: 84  LLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMR--VFLISNNKFIGEIPRLICNT-STI 140
           L    ++P  NL  LDL  N +    P     +R     + NN     + +      + +
Sbjct: 169 LRVLHQMPLLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 141 EILDLSNNSLSGT--IPECIGNFSKSLRVLDLRKNR------FHGTIPETFPKGNNLTTL 192
           E+  L          + +   +  + L  L + + R      +   I + F    N+++ 
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252
           +     +      S       Q L+L N K        L +L+ L     +    +    
Sbjct: 288 SLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF---- 341

Query: 253 DYEADYYFSKLRILDLSNNNFTGS-LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDS 311
              ++     L  LDLS N  +     +       ++  +           +        
Sbjct: 342 ---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL----------DLSFNGVIT- 387

Query: 312 VTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPS 370
               +    + L ++      +D   ++        +   L +L  L++S          
Sbjct: 388 ----MSSNFLGLEQL----EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 371 SLGDLTDLESLDLSSNVL-DGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
               L+ LE L ++ N   +  +P   T L  L  L+LS+ +LE   P 
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (315), Expect = 9e-31
 Identities = 47/311 (15%), Positives = 85/311 (27%), Gaps = 57/311 (18%)

Query: 142 ILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG 201
                  +    IP+   N   S + LDL  N        +F     L  L+ +  E+  
Sbjct: 11  TYQCMELNFY-KIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS 261
               +  + ++L  L L  N ++         L  LQ L+                    
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH--LK 124

Query: 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEV 321
            L+ L++++N         +F N+                                    
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTN---------------------------------- 150

Query: 322 KLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRL----LNLSQNILSGNIPSSLGDLTD 377
                      +DLS N         +  LH + L    L+LS N ++   P +  ++  
Sbjct: 151 --------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR- 201

Query: 378 LESLDLSSNVLDGVIPRE-LTRLTFLAVLNLSRNKLEGRIP-EGNQFATFSS--DSYGGN 433
           L  L L +N     + +  +  L  L V  L   +       E    +      +     
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 434 LGLCGFPLSKN 444
             L       +
Sbjct: 262 FRLAYLDYYLD 272

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
            T    + +F+ +IP+      S + L+LS N L      S     +L+ LDLS   +  
Sbjct: 10  ITYQCMELNFY-KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           +       L+ L+ L L+ N ++     
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALG 94

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  161 bits (408), Expect = 2e-42
 Identities = 53/347 (15%), Positives = 107/347 (30%), Gaps = 43/347 (12%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             L+ +   ++         + +         K          N   +  ++L N     
Sbjct: 448 TKLQIIYFANSPFTYD--NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHG---------TIPETFPKGNNLTTLNFNGNELVG-S 202
            +P+ + +    L+ L++  NR             + +    G  +       N L    
Sbjct: 506 QLPDFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK 262
              SL     L +LD  +NK+        GT  +L  L L  N+    +   +   +  +
Sbjct: 565 ASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQI-EEI-PEDFCAFTDQ 620

Query: 263 LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322
           +  L  S+N           K++  M  +      NK            +    +     
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVD--FSYNK------------IGSEGRNISCS 666

Query: 323 LMKI-LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS-------GNIPSSLGD 374
           +        +T+ LS N       EL      +  + LS N+++            +  +
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 375 LTDLESLDLSSNVLDGVIPREL--TRLTFLAVLNLSRNKLEGRIPEG 419
              L ++DL  N L   +  +   T L +L+ +++S N      P  
Sbjct: 727 TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  156 bits (395), Expect = 9e-41
 Identities = 60/353 (16%), Positives = 111/353 (31%), Gaps = 45/353 (12%)

Query: 93  KNLEYLDLRSNLLQGPVPA---PSSNMRVFLISNNKFIG---------EIPRLICNTSTI 140
           K+L  ++L +      +P        ++   I+ N+ I           +         I
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 141 EILDLSNNSLSGTIPE-CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL 199
           +I  +  N+L        +      L +LD   N+      E F     LT L  + N++
Sbjct: 551 QIFYMGYNNLEEFPASASLQKM-VKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQI 607

Query: 200 VGSVPRSLLNCA-NLQVLDLGNNKMKDTFPHW--LGTLRELQVLILRSNKFYGHLRDYEA 256
              +P         ++ L   +NK+K   P+     ++  +  +    NK     R+   
Sbjct: 608 E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 257 ---DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVT 313
              DY       + LS N      P   F     ++ I      N    + E   +    
Sbjct: 666 SMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTII--LSNNLMTSIPENSLKPKDG 722

Query: 314 LIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPEL-MGKLHSLRLLNLSQNILSGNIPSSL 372
                          + TTIDL  N       +     L  L  +++S N  S   P+  
Sbjct: 723 NYKN---------TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772

Query: 373 GDLTDLESLDL------SSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
            + + L++  +        N +    P  +T    L  L +  N +   + E 
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  150 bits (380), Expect = 9e-39
 Identities = 48/343 (13%), Positives = 95/343 (27%), Gaps = 74/343 (21%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS-----SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
             ++   +  N L+   PA +       + +    +NK              +  L L  
Sbjct: 548 PKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDY 604

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN--NLTTLNFNGNELVG---- 201
           N +   IPE    F+  +  L    N+    IP  F   +   + +++F+ N++      
Sbjct: 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 202 -SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF-----YGHLRDYE 255
            S         N   + L  N+++        T   +  +IL +N               
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI 315
                  L  +DL  N  T          +  +                           
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL--------------------------- 755

Query: 316 IKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI------LSGNIP 369
                          + +D+S N F    P        L+   +          +    P
Sbjct: 756 ---------------SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 370 SSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           + +     L  L + SN +   +  +L     L +L+++ N  
Sbjct: 800 TGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  137 bits (347), Expect = 1e-34
 Identities = 49/345 (14%), Positives = 95/345 (27%), Gaps = 61/345 (17%)

Query: 83  KLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEI 142
           +L  +     K+   +  +   L        S++    I+ N  +  I +    +     
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ 429

Query: 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS 202
           +    N ++  I + I   +K L+++    + F                 N +  +   +
Sbjct: 430 IGNLTNRITF-ISKAIQRLTK-LQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYEN 482

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYF-- 260
              S  N  +L  ++L N       P +L  L ELQ L +  N+     +          
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 261 -----SKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI 315
                 K++I  +  NN      +   + M  +                           
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL--------------------------- 575

Query: 316 IKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG-D 374
                            +D   N     +    G    L  L L  N +   IP      
Sbjct: 576 ---------------GLLDCVHNKVR-HLEAF-GTNVKLTDLKLDYNQIE-EIPEDFCAF 617

Query: 375 LTDLESLDLSSNVLDGVIPR-ELTRLTFLAVLNLSRNKLEGRIPE 418
              +E L  S N L  +        +  +  ++ S NK+      
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (294), Expect = 7e-28
 Identities = 40/315 (12%), Positives = 99/315 (31%), Gaps = 43/315 (13%)

Query: 119 FLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGT 178
           F    + +  +    + N   +  L L+     G +P+ IG  +  L+VL    +    +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETVS 362

Query: 179 IPETFPKGNNLTTLNFNGNELVGSVPR-SLLNCANLQVLDLGNNKMKDTFPHWLGTLREL 237
                 +           + +     +  L     L + DL  + +       +  +++ 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKD 420

Query: 238 QVLILRSNKFYG---HLRDYEADYY-FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE 293
             + L+  +       +          +KL+I+  +N+ FT    A+ +++         
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN------- 473

Query: 294 AADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHS 353
                                  + +E+     L   T ++L       ++P+ +  L  
Sbjct: 474 ----------------SDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 354 LRLLNLSQNILSG---------NIPSSLGDLTDLESLDLSSNVLDGV-IPRELTRLTFLA 403
           L+ LN++ N              +         ++   +  N L+       L ++  L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 404 VLNLSRNKLEGRIPE 418
           +L+   NK+   +  
Sbjct: 577 LLDCVHNKVRH-LEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (261), Expect = 9e-24
 Identities = 42/231 (18%), Positives = 78/231 (33%), Gaps = 33/231 (14%)

Query: 82  PKLLGNKKLPWKNLEYLDLRSNLLQG-PVPAPSS-------NMRVFLISNNKFIGEIPRL 133
           P +   K +    +  +D   N +         S       N     +S N+       L
Sbjct: 635 PNIFNAKSV--YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 134 ICNTSTIEILDLSNNSLS-------GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKG 186
               S I  + LSNN ++               N +  L  +DLR N+   ++ + F   
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKN-TYLLTTIDLRFNKLT-SLSDDFRAT 750

Query: 187 N--NLTTLNFNGNELVGSVPRSLLNCANLQVLDL------GNNKMKDTFPHWLGTLRELQ 238
               L+ ++ + N    S P   LN + L+   +        N++   +P  + T   L 
Sbjct: 751 TLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 239 VLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMT 289
            L + SN     +     +    +L ILD+++N             ++A  
Sbjct: 810 QLQIGSNDI-RKV----DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGM 855

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 3e-17
 Identities = 36/254 (14%), Positives = 72/254 (28%), Gaps = 22/254 (8%)

Query: 166 RVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD 225
             LD +  R++           N    N   +         L N   +  L L     K 
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 226 TFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNM 285
             P  +G L EL+VL   ++      R            + +   +        MF    
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGR--LFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395

Query: 286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP 345
           + +         N S  + +    +     IK+     +K   I        N     I 
Sbjct: 396 QRL---------NLSDLLQDAINRNPEMKPIKKDSRISLKDTQI----GNLTNRITF-IS 441

Query: 346 ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL 405
           + + +L  L+++  + +  + +  +      D E  +              + L  L  +
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 406 NLSRNKLEGRIPEG 419
            L       ++P+ 
Sbjct: 497 ELYNCPNMTQLPDF 510

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 17/142 (11%)

Query: 92  WKNLEYLDLRSNLLQGPVPAPS-----SNMRVFLISNNKFIGEIPRLICNTSTIEILDL- 145
              L  +DLR N L   +           +    +S N F    P    N+S ++   + 
Sbjct: 727 TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIR 784

Query: 146 -----SNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELV 200
                  N +    P  I     SL  L +  N     + E       L  L+   N  +
Sbjct: 785 HQRDAEGNRILRQWPTGITTC-PSLIQLQIGSNDI-RKVDEKLTP--QLYILDIADNPNI 840

Query: 201 GSVPRSLLNCANLQVLDLGNNK 222
                S+       +  L  +K
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 92  WKNLEYLDLRSNLLQG--PVPAPSSNMRVF------LISNNKFIGEIPRLICNTSTIEIL 143
              L  +D+  N        P  SS ++ F          N+ + + P  I    ++  L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 144 DLSNNSLSGTIPECIGNFSKSLRVLDLRKNRF-HGTIPETFPK-GNNLTTLNFNGNELVG 201
            + +N +   + E +   +  L +LD+  N      +    P     +  L ++  + + 
Sbjct: 812 QIGSNDIR-KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

Query: 202 SVP 204
              
Sbjct: 868 GCD 870

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (387), Expect = 3e-40
 Identities = 51/331 (15%), Positives = 108/331 (32%), Gaps = 25/331 (7%)

Query: 94  NLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
           + E L+   N+L   +   +     N+    ++  +          +   ++ L L+ N 
Sbjct: 34  STECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
           L       +     +L+ L   +                L +L    N +          
Sbjct: 93  LIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD-YYFSKLRILDL 268
              L+VLD  NN +       + +L++   L L  N     +   E   +  +  + L+ 
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN--GNDIAGIEPGAFDSAVFQSLNF 209

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
                   +               +    +  + +    +ED     I     + +  ++
Sbjct: 210 GGTQNLLVIF--------------KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL 388
           +  +I+L K+ F             L+ L+L+   LS  +PS L  L+ L+ L LS+N  
Sbjct: 256 V-ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 389 DGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           + +     +    L  L++  N     +  G
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (382), Expect = 1e-39
 Identities = 75/385 (19%), Positives = 120/385 (31%), Gaps = 70/385 (18%)

Query: 84  LLGNKKLPWKNLEYLDLRSNLLQGPVPA-----PSSNMRVFLISNNKFIGEIPRLICNTS 138
             G K    ++L          +   PA        ++    +  + F           S
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE 198
            ++ LDL+   LS  +P  +   S +L+ L L  N+F      +     +LT L+  GN 
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 199 LVGSV-PRSLLNCANLQVLDLGNNKMK--DTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255
               +    L N  NL+ LDL ++ ++  D     L  L  LQ L L  N+        E
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS--LKTE 394

Query: 256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI 315
           A     +L +LDL+            F+N+  +                           
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL--------------------------- 427

Query: 316 IKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNI---PSSL 372
                            ++LS +       +L   L +L+ LNL  N          +SL
Sbjct: 428 ---------------KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 373 GDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE-------------G 419
             L  LE L LS   L  +     T L  +  ++LS N+L     E              
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532

Query: 420 NQFATFSSDSYGGNLGLCGFPLSKN 444
           N  +                 L +N
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  148 bits (375), Expect = 1e-38
 Identities = 62/336 (18%), Positives = 116/336 (34%), Gaps = 31/336 (9%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMR----VFLISNNKFIGEIPRLICNTSTIEILDLSNN 148
           + L+ LD ++N +        S+++    + L  N   I  I     +++  + L+    
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 149 SLSGTIPECIGNFS-KSLRVLDLRKNRFHGTIPETFP--KGNNLTTLNFNGNELVGSVPR 205
                I + + N + +SL +            P  F      ++ ++N   +        
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
           +    + LQ LDL    +    P  L  L  L+ L+L +NKF        +   F  L  
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF--ENLCQISASNFPSLTH 329

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMT--DIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
           L +  N     L     +N++ +   D+      +  +       +             L
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLS----HDDIETSDCCNLQLR----------NL 375

Query: 324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP-SSLGDLTDLESLD 382
             +     +++LS N       E   +   L LL+L+   L      S   +L  L+ L+
Sbjct: 376 SHL----QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 383 LSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           LS ++LD    +    L  L  LNL  N       +
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  144 bits (366), Expect = 2e-37
 Identities = 61/342 (17%), Positives = 109/342 (31%), Gaps = 44/342 (12%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
             L+ L L +N L        +    ++                + N  T+E L L +N 
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT--TLNFNGNELVGSVPRSL 207
           +S          ++ L+VLD + N  H    E        T  +LN NGN++   +    
Sbjct: 141 ISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGA 198

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLG--TLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
            + A  Q L+ G  +        L   T++ L +                       +  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           ++L  + F  ++ +  F     +                         L +      L +
Sbjct: 259 INLQKHYFF-NISSNTFHCFSGLQ-----------------------ELDLTA--THLSE 292

Query: 326 ILTIF------TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPS-SLGDLTDL 378
           + +          + LS N F            SL  L++  N     + +  L +L +L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 379 ESLDLSSNVLD--GVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
             LDLS + ++       +L  L+ L  LNLS N+      E
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  139 bits (353), Expect = 9e-36
 Identities = 61/339 (17%), Positives = 114/339 (33%), Gaps = 30/339 (8%)

Query: 90  LPWKNLEYLDLRSNLLQG--PVPAPSSNMRVFLISNNKFIGEIPRLICNTS--TIEILDL 145
           L       L+L  N + G  P    S+  +       + +  I + + N++  ++ +   
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 146 SNNSLSGTIPECIGNFSK-SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP 204
            +       P       + S+  ++L+K+ F      TF   + L  L+     L   +P
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELP 294

Query: 205 RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR 264
             L+  + L+ L L  NK ++           L  L ++ N     L           LR
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLR 353

Query: 265 ILDLSNNNFTGS-LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
            LDLS+++   S    +  +N+  +  +           +                + + 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSL----------NLSYNE--------PLSLKTEA 395

Query: 324 MKILTIFTTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLD 382
            K       +DL+      +  +     LH L++LNLS ++L  +       L  L+ L+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 383 LSSNVLDGVI---PRELTRLTFLAVLNLSRNKLEGRIPE 418
           L  N            L  L  L +L LS   L      
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  135 bits (341), Expect = 4e-34
 Identities = 59/329 (17%), Positives = 110/329 (33%), Gaps = 52/329 (15%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS--SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
             L+ LDL +  L          S ++  ++S NKF         N  ++  L +  N+ 
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFH--GTIPETFPKGNNLTTLNFNGNELVGSVPRSLL 208
              +        ++LR LDL  +               ++L +LN + NE +     +  
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 209 NCANLQVLDLGNNKMKDTFPH-WLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILD 267
            C  L++LDL   ++K          L  L+VL L  +     +   +       L+ L+
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--DISSEQLFDGLPALQHLN 455

Query: 268 LSNNNFTGS--LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           L  N+F           + +  +                                     
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRL------------------------------------- 478

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
                  + LS              L  +  ++LS N L+ +   +L  L  +  L+L+S
Sbjct: 479 -----EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
           N +  ++P  L  L+    +NL +N L+ 
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (338), Expect = 9e-34
 Identities = 62/313 (19%), Positives = 108/313 (34%), Gaps = 19/313 (6%)

Query: 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH 176
           + +   N   + EIP  +   ++ E L+ S N L              L  LDL + + +
Sbjct: 15  KTYNCENLG-LNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLIN-LTFLDLTRCQIY 70

Query: 177 GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRE 236
               +TF   + L TL    N L+     +L     L+ L      +       L   + 
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD 296
           L+ L L SN            +   KL++LD  NN     L      +++  T++    +
Sbjct: 131 LESLYLGSNHI--SSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLN 187

Query: 297 ENKSKYMGETYYEDSVTLI-------IKRQEVKLMKILTIF--TTIDLSKNSFHGEIPEL 347
            N    +    ++ +V                K +K  TI                 P +
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 348 MGKLHSLRL--LNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL 405
              L  + +  +NL ++       ++    + L+ LDL++  L   +P  L  L+ L  L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKL 306

Query: 406 NLSRNKLEGRIPE 418
            LS NK E     
Sbjct: 307 VLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  128 bits (323), Expect = 9e-32
 Identities = 58/339 (17%), Positives = 110/339 (32%), Gaps = 60/339 (17%)

Query: 93  KNLEYLDLRSNLLQG---PVPAPSSNMRVFLISNNKFIGEIPRLICNTS--TIEILDLSN 147
           K LE L L SN +     P   P+  ++V    NN         + +    T   L+L+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPR 205
           N ++  I     + +   + L+    +    I +        +L    F   +     P 
Sbjct: 189 NDIA-GIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 206 SLLNCA--NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKL 263
                   +++ ++L  +   +   +       LQ L L +                S L
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL---VGLSTL 303

Query: 264 RILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
           + L LS N F   L  +   N  ++T                                  
Sbjct: 304 KKLVLSANKFEN-LCQISASNFPSLT---------------------------------- 328

Query: 324 MKILTIFTTIDLSKNSFHGEI-PELMGKLHSLRLLNLSQNIL--SGNIPSSLGDLTDLES 380
                    + +  N+   E+    +  L +LR L+LS + +  S      L +L+ L+S
Sbjct: 329 --------HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           L+LS N    +          L +L+L+  +L+ +  + 
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 5e-20
 Identities = 41/270 (15%), Positives = 70/270 (25%), Gaps = 74/270 (27%)

Query: 166 RVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD 225
           +  +      +  IP T P  N+   L F+ N L      +     NL  LDL   ++  
Sbjct: 15  KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 226 TFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNM 285
                  +                            +L  L L+ N     +        
Sbjct: 72  IHEDTFQSQ--------------------------HRLDTLVLTANPLI-FMAETALSGP 104

Query: 286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP 345
           KA+                                            +   +        
Sbjct: 105 KALK------------------------------------------HLFFIQTGISSIDF 122

Query: 346 ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAV- 404
             +    +L  L L  N +S            L+ LD  +N +  +   +++ L      
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 405 -LNLSRNKLEGRIPEGNQFATFSSDSYGGN 433
            LNL+ N + G  P     A F S ++GG 
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
             LE L L    L             M    +S+N+        + +   I  L+L++N 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGT 178
           +S  +P  +   S   R ++LR+N    T
Sbjct: 535 ISIILPSLLPILS-QQRTINLRQNPLDCT 562

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (359), Expect = 2e-36
 Identities = 59/324 (18%), Positives = 107/324 (33%), Gaps = 55/324 (16%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
            N+  + L    ++           +   I   + + + P L  +   ++ L L+ N  S
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTL--DLPFLKSLTLTMNKGS 341

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFP--KGNNLTTLNFNGNELVGSVPRSLLN 209
            +  +       SL  LDL +N    +   ++     N+L  L+ + N  +  +  + + 
Sbjct: 342 ISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 210 CANLQVLDLGNNKMKDTFPHW-LGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDL 268
              LQ LD  ++ +K         +L +L  L +        +         + L  L +
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT--KIDFDGIFLGLTSLNTLKM 455

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
           + N+F  +  +  F N   +T                                       
Sbjct: 456 AGNSFKDNTLSNVFANTTNLT--------------------------------------- 476

Query: 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL 388
               +DLSK         +   LH L+LLN+S N L     S    L  L +LD S N +
Sbjct: 477 ---FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 389 DGVIPRELTRLTFLAVLNLSRNKL 412
           +            LA  NL+ N +
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  128 bits (323), Expect = 1e-31
 Identities = 54/350 (15%), Positives = 94/350 (26%), Gaps = 34/350 (9%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMR------VFLISNNKFIGEIPRLICNTSTIEILDLS 146
            NL ++DL  N +Q         +R      + L  +   I  I         +  L L 
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212

Query: 147 NNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFP--------KGNNLTTLNFNGNE 198
            N  S  I +        L V  L    F                     +         
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 199 LVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY 258
                       AN+  + L    +K      +    + Q L +   +            
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQF-----PTL 325

Query: 259 YFSKLRILDLSNNNFTGSLPAMFFKNMK-------AMTDIGEAADENKSKYMGETYYEDS 311
               L+ L L+ N  + S   +   ++        A++  G  +  +             
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 312 VTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPS 370
              II       ++ L     +D   ++            L  L  L++S      +   
Sbjct: 386 NGAIIMSANFMGLEELQ---HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 371 SLGDLTDLESLDLSSNVLDGVIPRE-LTRLTFLAVLNLSRNKLEGRIPEG 419
               LT L +L ++ N              T L  L+LS+ +LE  I  G
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (322), Expect = 1e-31
 Identities = 55/336 (16%), Positives = 106/336 (31%), Gaps = 29/336 (8%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMR--VFL-ISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
           + + +DL  N L+       SN     +L +S  +      +       +  L L+ N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG-SVPRSLLN 209
               P      + SL  L   + +          +   L  LN   N +    +P    N
Sbjct: 93  QSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD-YYFSKLRILDL 268
             NL  +DL  N ++    + L  LRE   + L  +     +   +   +   KL  L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 269 SNNNFTGSLPAMFFKNMKAMT----DIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM 324
             N  + ++     +N+  +      +GE  DE   +    +  E    + I        
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID------- 264

Query: 325 KILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLS 384
                     L+  +   +       L ++  ++L+   +       +      +SL + 
Sbjct: 265 -------EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSII 315

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
              L      +L  L     L L+ NK      +  
Sbjct: 316 RCQLKQFPTLDLPFLK---SLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (320), Expect = 2e-31
 Identities = 56/314 (17%), Positives = 109/314 (34%), Gaps = 41/314 (13%)

Query: 114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN 173
            N+    +     + ++P  I   S+ + +DLS N L         NFS+ L+ LDL + 
Sbjct: 12  PNITYQCMDQK--LSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRC 66

Query: 174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGT 233
                  + +   ++L+ L   GN +    P S     +L+ L     K+       +G 
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 234 LRELQVLILRSNKFYGHLRDYEADYYFS---KLRILDLSNNNFTGSLPAMFFKNMKAMTD 290
           L  L+ L +  N     +   +   YFS    L  +DLS N    ++     + ++    
Sbjct: 127 LITLKKLNVAHN----FIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQ 181

Query: 291 IGEAAD--ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPE-L 347
           +  + D   N   +             I+ Q  + +K       + L  N     I +  
Sbjct: 182 VNLSLDMSLNPIDF-------------IQDQAFQGIK----LHELTLRGNFNSSNIMKTC 224

Query: 348 MGKLHSLRLLNLSQNILSGNI------PSSLGDLTDL--ESLDLSSNVLDGVIPRELTRL 399
           +  L  L +  L               PS +  L D+  +   L+          +   L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 400 TFLAVLNLSRNKLE 413
             ++ ++L+   ++
Sbjct: 285 ANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (298), Expect = 2e-28
 Identities = 55/348 (15%), Positives = 105/348 (30%), Gaps = 39/348 (11%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
             L++LDL    ++           ++   +++ N      P      +++E L      
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSVPRSLL 208
           L+      IG    +L+ L++  N  H   +P  F    NL  ++ + N +       L 
Sbjct: 116 LASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 209 NCANL----QVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR 264
                      LD+  N +            +L  L LR N    ++         + L 
Sbjct: 175 FLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMK-TCLQNLAGLH 232

Query: 265 ILDLSNNNFTG-----SLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
           +  L    F              + +  +T                  +     +     
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV----- 287

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
                      + + L+  S    + ++  K    + L++ +  L         DL  L+
Sbjct: 288 -----------SAMSLAGVSIK-YLEDVP-KHFKWQSLSIIRCQLKQF---PTLDLPFLK 331

Query: 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
           SL L+ N     I  +   L  L+ L+LSRN L             +S
Sbjct: 332 SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  116 bits (293), Expect = 7e-28
 Identities = 65/351 (18%), Positives = 117/351 (33%), Gaps = 45/351 (12%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNM---RVFLISNNKFIG-EIPRLICNTSTIEILDLSNN 148
            +LE L      L      P   +   +   +++N     ++P    N + +  +DLS N
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 149 SLSGTIPECIGNFSK---SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
            +       +    +       LD+  N       + F +G  L  L   GN    ++ +
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMK 222

Query: 206 SLL-NCANLQVLDL------GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY 258
           + L N A L V  L          ++   P  +  L ++ +   R         D    +
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 259 YFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKR 318
             + +  + L+  +    L  +          I       +                +K+
Sbjct: 283 CLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSI----IRCQ----------------LKQ 321

Query: 319 QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDL--T 376
                +  L    ++ L+ N   G I      L SL  L+LS+N LS +   S  DL   
Sbjct: 322 FPTLDLPFL---KSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 377 DLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
            L  LDLS N    ++      L  L  L+   + L+ R+ E + F +   
Sbjct: 377 SLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEK 425

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.3 bits (222), Expect = 5e-19
 Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 79/267 (29%)

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
           G++  CI               +    +P+  P  ++   ++ + N L      S  N +
Sbjct: 2   GSLNPCIEVVP--NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
            LQ LDL   +++         L                            L  L L+ N
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLH--------------------------HLSNLILTGN 90

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
               S     F  + ++                                           
Sbjct: 91  PIQ-SFSPGSFSGLTSLE------------------------------------------ 107

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG-NIPSSLGDLTDLESLDLSSNVLDG 390
            +   +          +G+L +L+ LN++ N +    +P+   +LT+L  +DLS N +  
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 391 VIPRELTRLTFLA----VLNLSRNKLE 413
           +   +L  L         L++S N ++
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 7e-14
 Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 44/168 (26%)

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
            S  + +DLS N     L +  F N   +                               
Sbjct: 31  PSSTKNIDLSFNPLK-ILKSYSFSNFSELQ------------------------------ 59

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
                        +DLS+        +    LH L  L L+ N +    P S   LT LE
Sbjct: 60  ------------WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
           +L      L  +    + +L  L  LN++ N +         F+  ++
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTN 154

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
            T          ++P+ +    S + ++LS N L      S  + ++L+ LDLS   ++ 
Sbjct: 14  ITYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           +  +    L  L+ L L+ N ++   P 
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPG 98

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
            NL +LDL    L+            +++  +S+N  +           ++  LD S N 
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFH 176
           +  T    + +F KSL   +L  N   
Sbjct: 533 IE-TSKGILQHFPKSLAFFNLTNNSVA 558

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (308), Expect = 2e-31
 Identities = 47/284 (16%), Positives = 96/284 (33%), Gaps = 35/284 (12%)

Query: 130 IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNL 189
           I  +  N +  +I  ++++SL       +   + +++ LDL  N               L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 190 TTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249
             LN + N L       L + + L+ LDL NN +++     L     ++ L   +N    
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN--- 110

Query: 250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYE 309
            +            + + L+NN  T  L  +       +  +      N+          
Sbjct: 111 -ISRVSCS-RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD--LKLNE---------- 155

Query: 310 DSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP 369
             +  +   +       L     ++L  N  + ++   +     L+ L+LS N L+  + 
Sbjct: 156 --IDTVNFAELAASSDTL---EHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMG 207

Query: 370 SSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
                   +  + L +N L  +I + L     L   +L  N   
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (289), Expect = 1e-28
 Identities = 57/351 (16%), Positives = 107/351 (30%), Gaps = 63/351 (17%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
              +   +  + L+  +      + N++   +S N         +   + +E+L+LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
           L     + + + S +LR LDL  N       +    G ++ TL+   N +   V  S   
Sbjct: 70  LY-ETLD-LESLS-TLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSCSRGQ 120

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
               + + L NNK+        G    +Q L L+ N+    +   E       L  L+L 
Sbjct: 121 --GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQ 177

Query: 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329
            N     +                                                    
Sbjct: 178 YNFIY-DVKGQVV--------------------------------------------FAK 192

Query: 330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD 389
             T+DLS N     +         +  ++L  N L   I  +L    +LE  DL  N   
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 390 GVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP 440
               R+        V  +++  ++    +  +  T  +  + G       P
Sbjct: 251 CGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 1e-24
 Identities = 52/267 (19%), Positives = 92/267 (34%), Gaps = 37/267 (13%)

Query: 154 IPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL 213
           I E   N     ++  +  +     +        N+  L+ +GN L       L     L
Sbjct: 2   IHEIKQN-GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 214 QVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNF 273
           ++L+L +N + +T    L +L  L+ L L +N     +++         +  L  +NNN 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNY----VQELLV---GPSIETLHAANNNI 111

Query: 274 TGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTI 333
           +  +     +  K +         NK                I           +    +
Sbjct: 112 S-RVSCSRGQGKKNIY-----LANNK----------------ITMLRDLDEGCRSRVQYL 149

Query: 334 DLSKNSFHG-EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           DL  N        EL     +L  LNL  N +  ++   +     L++LDLSSN L   +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FM 206

Query: 393 PRELTRLTFLAVLNLSRNKLEGRIPEG 419
             E      +  ++L  NKL   I + 
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKA 232

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 19/206 (9%)

Query: 92  WKNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPR--LICNTSTIEILDL 145
            +  + + L +N +   +        S ++   +  N+ I  +    L  ++ T+E L+L
Sbjct: 119 GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNL 176

Query: 146 SNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
             N +   +   +      L+ LDL  N+    +   F     +T ++   N+LV  + +
Sbjct: 177 QYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 206 SLLNCANLQVLDLGNNKMK-DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR 264
           +L    NL+  DL  N     T   +    + +Q +  ++ K      +         + 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE-----EECTVP 286

Query: 265 ILDLSNNNFTGSLPAMFFKNMKAMTD 290
            L          LPA F   + A+  
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALGH 312

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 37/221 (16%)

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD--YY 259
           ++     N    ++  + ++ +K        +   ++ L L  N     L    A     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP----LSQISAADLAP 56

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
           F+KL +L+LS+N           +++  +                        TL +   
Sbjct: 57  FTKLELLNLSSNVLY-ETLD--LESLSTLR-----------------------TLDLNNN 90

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
            V+ + +     T+  + N+    +     +    + + L+ N ++       G  + ++
Sbjct: 91  YVQELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 380 SLDLSSNVLDGV-IPRELTRLTFLAVLNLSRNKLEGRIPEG 419
            LDL  N +D V           L  LNL  N +   +   
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386
              +    ++ +S    +  L     +++ L+LS N LS    + L   T LE L+LSSN
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 387 VLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQ 421
           VL   +   L  L+ L  L+L+ N ++  +  G  
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 90  LPWKNLEYLDLRSNLLQ--GPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
           + +  L+ LDL SN L   GP    ++ +    + NNK +  I + +  +  +E  DL  
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRG 246

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
           N            FSK+ RV  + K      +     +   + TL   G      +P   
Sbjct: 247 NGFHCGTLRDF--FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 208 LNCANLQVLDLGNN 221
                 +++ LG++
Sbjct: 304 A----DRLIALGHH 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (308), Expect = 3e-31
 Identities = 53/354 (14%), Positives = 96/354 (27%), Gaps = 80/354 (22%)

Query: 82  PKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLI--CNTST 139
             +L      W+     D   N         +SN         + +     L+       
Sbjct: 29  HDVLSQ----WQRHYNADR--NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG 82

Query: 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL 199
              L+L +  L    P+        L+ + +        +P+T  +   L TL    N L
Sbjct: 83  RVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 200 VGSVPRSLLNCANLQVLDL-GNNKMKD--------TFPHWLGTLRELQVLILRSNKFY-- 248
             ++P S+ +   L+ L +    ++ +                L  LQ L L        
Sbjct: 140 R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 249 ----GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG 304
                +L           L+ L + N+  + +L             I             
Sbjct: 199 PASIANL---------QNLKSLKIRNSPLS-ALGP----------AIHH----------- 227

Query: 305 ETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNIL 364
                                 L     +DL   +     P + G    L+ L L     
Sbjct: 228 ----------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 365 SGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
              +P  +  LT LE LDL   V    +P  + +L    ++ +  +        
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (306), Expect = 7e-31
 Identities = 53/334 (15%), Positives = 100/334 (29%), Gaps = 58/334 (17%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
              E L  + +    P     S  +    ++        R   N++  +I   +  +L  
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ-ANSNNPQIETRTGRALK- 69

Query: 153 TIPECIGNF-SKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
              + + +        L+LR        P+   + ++L  +  +   L+  +P ++   A
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN-------KFYGHLRDYEADYYFSKLR 264
            L+ L L  N ++   P  + +L  L+ L +R+        +                L+
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM 324
            L L       SLPA           I                                 
Sbjct: 187 SLRLEWTGIR-SLPA----------SIAN------------------------------- 204

Query: 325 KILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLS 384
             L    ++ +  +     +   +  L  L  L+L       N P   G    L+ L L 
Sbjct: 205 --LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
                  +P ++ RLT L  L+L       R+P 
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (282), Expect = 1e-27
 Identities = 52/334 (15%), Positives = 92/334 (27%), Gaps = 95/334 (28%)

Query: 82  PKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIE 141
             LL +   P      L+LRS  L                       + P      S ++
Sbjct: 72  ADLLEDATQP--GRVALELRSVPLP----------------------QFPDQAFRLSHLQ 107

Query: 142 ILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG 201
            + +    L   +P+ +  F   L  L L +N     +P +    N L  L+      + 
Sbjct: 108 HMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 202 SVPRSLLNCA---------NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY---- 248
            +P  L +           NLQ L L    ++ + P  +  L+ L+ L +R++       
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP 223

Query: 249 --GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET 306
              HL          KL  LDL       + P             G              
Sbjct: 224 AIHHL---------PKLEELDLRGCTALRNYPP----------IFGG------------- 251

Query: 307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG 366
                                     + L   S    +P  + +L  L  L+L   +   
Sbjct: 252 --------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 367 NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT 400
            +PS +  L     + +  ++   +         
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 3e-23
 Identities = 43/287 (14%), Positives = 84/287 (29%), Gaps = 38/287 (13%)

Query: 136 NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFN 195
           ++S  E L    ++      + +  + +     D  +              NN       
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQW-QRHYNADRNRWHS----AWRQANSNNPQIETRT 64

Query: 196 GNELVGSVPRSLLNCA--NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY----- 248
           G  L  +    L +        L+L +  +   FP     L  LQ + + +         
Sbjct: 65  GRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDT 122

Query: 249 -GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
                        + L  L L+ N    +LPA    ++  + ++       +   +    
Sbjct: 123 MQQF---------AGLETLTLARNPLR-ALPA-SIASLNRLREL-SIRACPELTEL---- 166

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
             + +       E + +  L       L        +P  +  L +L+ L +  + LS  
Sbjct: 167 -PEPLASTDASGEHQGLVNLQSL---RLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220

Query: 368 IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS-RNKLE 413
           +  ++  L  LE LDL         P        L  L L   + L 
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 24/219 (10%), Positives = 57/219 (26%), Gaps = 51/219 (23%)

Query: 200 VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY 259
           +GS      + +  + L    +     +   L   +                 +      
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN------ 54

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
            +  +I   +      +              + +A    +                    
Sbjct: 55  SNNPQIETRTGRALK-ATAD----------LLEDATQPGR-------------------- 83

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
                        ++L       + P+   +L  L+ + +    L   +P ++     LE
Sbjct: 84  -----------VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLE 130

Query: 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           +L L+ N L   +P  +  L  L  L++        +PE
Sbjct: 131 TLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (300), Expect = 6e-30
 Identities = 67/323 (20%), Positives = 115/323 (35%), Gaps = 42/323 (13%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
           +++  L +    +         +N+    ++ N+     P  + N   +  L +  N + 
Sbjct: 44  ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI- 100

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
            T    + N   +LR L L ++      P        + +LN   N  + S    L N  
Sbjct: 101 -TDISALQNL-TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMT 155

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
            L  L +  +K+KD  P  +  L +L  L L  N+    + D       + L       N
Sbjct: 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ----IEDISPLASLTSLHYFTAYVN 209

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
             T   P     NM  +  +      NK               I     +  +  L   T
Sbjct: 210 QITDITP---VANMTRLNSLK--IGNNK---------------ITDLSPLANLSQL---T 246

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
            +++  N     I  +   L  L++LN+  N +S    S L +L+ L SL L++N L   
Sbjct: 247 WLEIGTNQISD-INAV-KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 392 IPRELTRLTFLAVLNLSRNKLEG 414
               +  LT L  L LS+N +  
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (300), Expect = 6e-30
 Identities = 72/322 (22%), Positives = 123/322 (38%), Gaps = 42/322 (13%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
            NLEYL+L  N +    P +    +    I  NK I +I  L  N + +  L L+ +++S
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK-ITDISAL-QNLTNLRELYLNEDNIS 123

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
              P  + N +K +  L+L  N    +          L  L    +++    P  + N  
Sbjct: 124 DISP--LANLTK-MYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLT 177

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
           +L  L L  N+++D  P  L +L  L       N+    + D       ++L  L + NN
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ----ITDITPVANMTRLNSLKIGNN 231

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
             T   P     N+  +T +      N+               I     VK +  L    
Sbjct: 232 KITDLSP---LANLSQLTWLE--IGTNQ---------------ISDINAVKDLTKLK--- 268

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
            +++  N    +I  L   L  L  L L+ N L       +G LT+L +L LS N +  +
Sbjct: 269 MLNVGSNQIS-DISVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 392 IPRELTRLTFLAVLNLSRNKLE 413
            P  L  L+ +   + +   ++
Sbjct: 327 RP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (281), Expect = 3e-27
 Identities = 64/327 (19%), Positives = 115/327 (35%), Gaps = 44/327 (13%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
                  L+   +   V      ++   +++  K +  I   I   + +E L+L+ N ++
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQIT 79

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
              P  + N    L  L +  N+   T         NL  L  N + +  S    L N  
Sbjct: 80  DISP--LSNL-VKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNI--SDISPLANLT 132

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
            +  L+LG N    +    L  +  L  L +  +K    ++D       + L  L L+ N
Sbjct: 133 KMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESK----VKDVTPIANLTDLYSLSLNYN 187

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
                 P     ++ ++      A  N+               I     V  M  L    
Sbjct: 188 QIEDISP---LASLTSLHYFT--AYVNQ---------------ITDITPVANMTRL---N 224

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
           ++ +  N     +  L   L  L  L +  N +S    +++ DLT L+ L++ SN +  +
Sbjct: 225 SLKIGNNKITD-LSPL-ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI 280

Query: 392 IPRELTRLTFLAVLNLSRNKLEGRIPE 418
               L  L+ L  L L+ N+L     E
Sbjct: 281 SV--LNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.2 bits (248), Expect = 6e-23
 Identities = 58/295 (19%), Positives = 104/295 (35%), Gaps = 42/295 (14%)

Query: 120 LISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTI 179
           L +    I +I     + +      L   S++  +        +S+  L +   +     
Sbjct: 5   LATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVT--QEEL-ESITKLVVAGEKV--AS 58

Query: 180 PETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQV 239
            +      NL  LN NGN++    P  L N   L  L +G NK+ D     L  L  L+ 
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRE 114

Query: 240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK 299
           L L  +     + D       +K+  L+L  N+    L      NM  +  +     E+K
Sbjct: 115 LYLNEDN----ISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLT--VTESK 166

Query: 300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNL 359
                          +     +  +  L    ++ L+ N      P  +  L SL     
Sbjct: 167 ---------------VKDVTPIANLTDL---YSLSLNYNQIEDISP--LASLTSLHYFTA 206

Query: 360 SQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
             N ++   P  + ++T L SL + +N +  + P  L  L+ L  L +  N++  
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.3 bits (238), Expect = 1e-21
 Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 63/278 (22%)

Query: 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS 202
           L      ++   P    + ++      L+K     T   T  +  ++T L   G ++  S
Sbjct: 5   LATLPAPINQIFP--DADLAE-GIRAVLQKASV--TDVVTQEELESITKLVVAGEKV-AS 58

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK 262
           +   +    NL+ L+L  N++ D  P  L  L +L  L + +NK    + D  A    + 
Sbjct: 59  IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK----ITDISALQNLTN 111

Query: 263 LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322
           LR L L+ +N +   P     N+  M                                  
Sbjct: 112 LRELYLNEDNISDISP---LANLTKMY--------------------------------- 135

Query: 323 LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLD 382
                    +++L  N    ++  L   +  L  L ++++ +    P  + +LTDL SL 
Sbjct: 136 ---------SLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 383 LSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
           L+ N ++ + P  L  LT L       N++    P  N
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN 219

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 36/226 (15%)

Query: 189 LTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248
             TL      +  +      + A      L    + D        L  +  L++   K  
Sbjct: 2   AATLATLPAPI--NQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-- 55

Query: 249 GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYY 308
             +   +   Y + L  L+L+ N  T   P     N+  +T++      NK   +     
Sbjct: 56  --VASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNL--YIGTNKITDISA--- 105

Query: 309 EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNI 368
                          ++ LT    + L++++    I  L   L  +  LNL  N    ++
Sbjct: 106 ---------------LQNLTNLRELYLNEDNISD-ISPL-ANLTKMYSLNLGANHNLSDL 148

Query: 369 PSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
            S L ++T L  L ++ + +  V P  +  LT L  L+L+ N++E 
Sbjct: 149 -SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 31/206 (15%), Positives = 58/206 (28%), Gaps = 57/206 (27%)

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
              L      +   FP     L E    +L+       + D         +  L ++   
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKAS----VTDVVTQEELESITKLVVAGEK 55

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
              S+     + +  +                                            
Sbjct: 56  VA-SIQG--IEYLTNLE------------------------------------------Y 70

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           ++L+ N      P  +  L  L  L +  N ++    S+L +LT+L  L L+ + +  + 
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126

Query: 393 PRELTRLTFLAVLNLSRNKLEGRIPE 418
           P  L  LT +  LNL  N     +  
Sbjct: 127 P--LANLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
            T+         +I      L       L +  ++     +  +L  +  L ++   +  
Sbjct: 3   ATLATLPAPI-NQIFPD-ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS 58

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
           +    +  LT L  LNL+ N++    P  N
Sbjct: 59  IQG--IEYLTNLEYLNLNGNQITDISPLSN 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (309), Expect = 1e-29
 Identities = 63/335 (18%), Positives = 115/335 (34%), Gaps = 25/335 (7%)

Query: 94  NLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLIC-NTSTIEILDLSNN 148
             E L L  N ++  V A S      +++  + +      I +    N   + ILDL ++
Sbjct: 25  TTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTI--PETFPKGNNLTTLNFNGNELVG-SVPR 205
            +   +          L  L L        +     F     LT L+ + N++    +  
Sbjct: 84  KIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLR--ELQVLILRSNKFY----GHLRDYEADYY 259
           S     +L+ +D  +N++     H L  L+   L    L +N  Y             + 
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
              L ILD+S N +T  +   F   +                              IK  
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQA-------FSLILAHHIMGAGFGFHNIKDP 255

Query: 320 EVKLMKIL--TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD 377
           +      L  +    +DLS          +   L  L++LNL+ N ++     +   L +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           L+ L+LS N+L  +       L  +A ++L +N +
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  118 bits (298), Expect = 3e-28
 Identities = 70/357 (19%), Positives = 124/357 (34%), Gaps = 45/357 (12%)

Query: 90  LPWKNLEYLDLRSNLLQGPVPAPSSN---------MRVFLISNNKFIGEIPRLICNT--- 137
           L  K L +  L +N L   V               + +  +S N +  +I     N    
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 138 ---------STIEILDLSNNSLSGTIPECI--GNFSKSLRVLDLRKNRFHGTIPETFPKG 186
                      I       +++     +    G    S+R LDL            F   
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 187 NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
            +L  LN   N++      +     NLQVL+L  N + + +      L ++  + L+ N 
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 247 FYGHLRDYEADYYFSKLRILDLSNNNFT-----GSLPAMFFKNMKAMTDIGEAADENKSK 301
               +   +   +  KL+ LDL +N  T      S+P +F    K +T            
Sbjct: 350 IA--IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL--------PKI 399

Query: 302 YMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG-EIPELMGKLHSLRLLNLS 360
            +       S   +     +  +  +     + L++N F      +   +  SL  L L 
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 361 QNILSGNIPSSL-----GDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           +N+L     + L       L+ L+ L L+ N L+ + P   + LT L  L+L+ N+L
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (281), Expect = 3e-26
 Identities = 68/421 (16%), Positives = 148/421 (35%), Gaps = 48/421 (11%)

Query: 93  KNLEYLDLRSNLLQGP-----VPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
            ++       + ++ P          S++R   +S+        R+      +++L+L+ 
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
           N ++    E       +L+VL+L  N         F     +  ++   N +     ++ 
Sbjct: 300 NKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLGTLREL-----------------QVLILRSNKFYGH 250
                LQ LDL +N +  T  H++ ++ ++                  ++ L  N+   +
Sbjct: 359 KFLEKLQTLDLRDNAL--TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE-N 415

Query: 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYED 310
           L           L+IL L+ N F+            ++  +          ++GE   + 
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL----------FLGENMLQL 465

Query: 311 SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPS 370
           +    +     + +  L +   + L+ N  +   P +   L +LR L+L+ N L+    +
Sbjct: 466 AWETELCWDVFEGLSHLQV---LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522

Query: 371 SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSY 430
            L    +LE LD+S N L    P     L+    L+++ NK         + +TF +   
Sbjct: 523 DL--PANLEILDISRNQLLAPNPDVFVSLSV---LDITHNKFICEC----ELSTFINWLN 573

Query: 431 GGNLGLCGFPLSKNCSNDEPPQSSSVLEDDSESETGFGWKVVLMGYVCGTVFGMILGYIL 490
             N+ + G P    C   +     S+    +E          L   +       +  +++
Sbjct: 574 HTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLM 633

Query: 491 L 491
            
Sbjct: 634 T 634

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (280), Expect = 4e-26
 Identities = 64/348 (18%), Positives = 107/348 (30%), Gaps = 72/348 (20%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEI--PRLICNTSTIEILDLSN 147
            NL  LDL S+ +    P       ++    +        +       N   +  LDLS 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 148 NSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFP--KGNNLTTLNFNGNELVGSV 203
           N +         +F    SL+ +D   N+            +G  L+  +   N L   V
Sbjct: 133 NQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 204 PRSLLNCAN------LQVLDLGNNKMK------------DTFPHWLGTLRELQVLILRSN 245
                 C N      L++LD+  N                +    L     +       +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 246 KFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE 305
                 ++  A    S +R LDLS+     SL +  F+ +K                   
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLK------------------- 290

Query: 306 TYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365
                            L         ++L+ N  +    E    L +L++LNLS N+L 
Sbjct: 291 ----------------DL-------KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 366 GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
               S+   L  +  +DL  N +  +  +    L  L  L+L  N L 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (270), Expect = 7e-25
 Identities = 58/307 (18%), Positives = 112/307 (36%), Gaps = 43/307 (14%)

Query: 129 EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTI-PETFPKGN 187
           ++P+++   +T E L LS N +  T+      F + L++L+L       TI  E F    
Sbjct: 18  QVPQVL---NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTF--PHWLGTLRELQVLILRSN 245
           NL  L+   +++    P +     +L  L L    + D      +   L+ L  L L  N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 246 KFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE 305
           +    L  + +    + L+ +D S+N     +     + ++  T                
Sbjct: 134 QIR-SLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKT---------------L 176

Query: 306 TYYEDSVTLIIKRQEVKLMKILTIF-----TTIDLSKNSFHGEIPEL------------M 348
           +++  +   +  R  V   K +  F       +D+S N +  +I               +
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 349 GKLHSLRLLNLSQNILSGNIPSSLGDL--TDLESLDLSSNVLDGVIPRELTRLTFLAVLN 406
              H +       + +     ++   L  + +  LDLS   +  +  R    L  L VLN
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 407 LSRNKLE 413
           L+ NK+ 
Sbjct: 297 LAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.7 bits (207), Expect = 5e-17
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 12/199 (6%)

Query: 92  WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             ++  + L  N L        +   + L  N     +I   +     ++IL L+ N  S
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN-----NLTTLNFNGNELVGSVPRS 206
               +   + + SL  L L +N                   +L  L  N N L    P  
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 207 LLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRIL 266
             +   L+ L L +N++     + L     L++L +  N+      D      F  L +L
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD-----VFVSLSVL 552

Query: 267 DLSNNNFTGSLPAMFFKNM 285
           D+++N F        F N 
Sbjct: 553 DITHNKFICECELSTFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 9e-10
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNI-PSSLGDLTDLESLDLSSNVLD 389
             + LS N            L  L+LL L        I   +  +L +L  LDL S+ + 
Sbjct: 27  ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

Query: 390 GVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
            + P     L  L  L L    L   + +   F    +
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
                  +   ++P++   L++   L LS N +     SS   L  L+ L+L S      
Sbjct: 8   IAFYRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 392 IPRE-LTRLTFLAVLNLSRNKLEGRIPEG 419
           I +E    L  L +L+L  +K+   +   
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIY-FLHPD 91

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 352 HSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNK 411
              R+       L+  +P     L   E L LS N +  V       L  L +L L    
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 412 LEGRIPEG 419
               I + 
Sbjct: 60  TPLTIDKE 67

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (298), Expect = 2e-29
 Identities = 57/344 (16%), Positives = 108/344 (31%), Gaps = 49/344 (14%)

Query: 84  LLGNKKLPWKNLEYLDLRSNLL---QGPVPAPSSNMRVFLISNNKFIGEIPRLI-CNTST 139
             G + +   N + +  +++ +      +      + +  +++ + I EI         T
Sbjct: 36  YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHT 94

Query: 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL 199
           I+ L +  N++   +P  +      L VL L +N         F     LTTL+ + N L
Sbjct: 95  IQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 200 VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY 259
                 +     +LQ L L +N++       L  +  L    +  N              
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-------STLAI 203

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKR- 318
              +  LD S+N+    +       +                            L ++  
Sbjct: 204 PIAVEELDASHNSIN-VVRGPVNVELT--------------------------ILKLQHN 236

Query: 319 --QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT 376
              +   +        +DLS N     +     K+  L  L +S N L   +      + 
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 377 DLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
            L+ LDLS N L   + R   +   L  L L  N +   +    
Sbjct: 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (266), Expect = 4e-25
 Identities = 59/328 (17%), Positives = 113/328 (34%), Gaps = 51/328 (15%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSN 147
           + +E L+L    ++  +   +      ++   +  N  I  +P  +  N   + +L L  
Sbjct: 69  RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLER 126

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
           N LS ++P  I + +  L  L +  N       +TF    +L  L  + N L   V  SL
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 184

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILD 267
           +   +L   ++  N +       L     ++ L    N     +          +L IL 
Sbjct: 185 I--PSLFHANVSYNLLST-----LAIPIAVEELDASHNS----INVVRGPV-NVELTILK 232

Query: 268 LSNNNFTGSLPAMFFKNMKAMT--DIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           L +NN T         N   +   D+      N+                +++       
Sbjct: 233 LQHNNLT-DTAW--LLNYPGLVEVDLSY----NE----------------LEKIMYHPFV 269

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
            +     + +S N     +      + +L++L+LS N L  ++  +      LE+L L  
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLE 413
           N +   +         L  L LS N  +
Sbjct: 328 NSI-VTLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 41/196 (20%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            +L + ++  NLL     A    +     S+N  I  +   +     + IL L +N+L+ 
Sbjct: 186 PSLFHANVSYNLLS--TLAIPIAVEELDASHNS-INVVRGPVN--VELTILKLQHNNLTD 240

Query: 153 TIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
                         L  +DL  N     +   F K   L  L  + N LV ++       
Sbjct: 241 -----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
             L+VLDL +N +             L+ L L  N     +   +       L+ L LS+
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLKLST-HHTLKNLTLSH 348

Query: 271 NNFTGSLPAMFFKNMK 286
           N++  +     F+N+ 
Sbjct: 349 NDWDCNSLRALFRNVA 364

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 34/250 (13%)

Query: 172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWL 231
           +   +  I            ++ +            +   N +++   N+ M+      L
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 232 GTLRELQVLILRSNKFYGHLRDYEAD--YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMT 289
            + R++++L L        + + +     Y   ++ L +  N     LP   F+N+  +T
Sbjct: 66  DSFRQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120

Query: 290 DIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMG 349
            +    + N                 +      +       TT+ +S N+      +   
Sbjct: 121 VLV--LERND----------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 350 KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR 409
              SL+ L LS N L+ ++  SL  +  L   ++S N+L       L     +  L+ S 
Sbjct: 163 ATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLL-----STLAIPIAVEELDASH 214

Query: 410 NKLEGRIPEG 419
           N +   +   
Sbjct: 215 NSIN-VVRGP 223

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 25/188 (13%)

Query: 233 TLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIG 292
              ++ + +   + ++G       D   +  +I+   N+     LPA    + + +  + 
Sbjct: 22  VFYDVHIDMQTQDVYFGF-----EDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 293 EAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLH 352
              ++ +                I+  +            + +  N+     P +   + 
Sbjct: 76  --LNDLQ----------------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
            L +L L +N LS        +   L +L +S+N L+ +        T L  L LS N+L
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 413 EGRIPEGN 420
              +    
Sbjct: 178 T-HVDLSL 184

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (301), Expect = 2e-29
 Identities = 75/362 (20%), Positives = 124/362 (34%), Gaps = 66/362 (18%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNM---RVFLISNNKFIGEI-PRLICNTSTIEILDLSNNS 149
               LDL  N ++       ++        ++ N  +  + P    N   +  L L +N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
           L   IP  +     +L  LD+ +N+    +   F    NL +L    N+LV    R+   
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY----GHLRDYEADYYFSKLRI 265
             +L+ L L    +       L  L  L VL LR            +         +L++
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR------LYRLKV 204

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           L++S+  +  ++       +                            L           
Sbjct: 205 LEISHWPYLDTMTPNCLYGL---------------------------NL----------- 226

Query: 326 ILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLS 384
                T++ ++  +    +P L    L  LR LNLS N +S    S L +L  L+ + L 
Sbjct: 227 -----TSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKN 444
              L  V P     L +L VLN+S N+L   + E      F S      L L   PL+ +
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES----VFHSVGNLETLILDSNPLACD 335

Query: 445 CS 446
           C 
Sbjct: 336 CR 337

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (256), Expect = 2e-23
 Identities = 53/285 (18%), Positives = 97/285 (34%), Gaps = 27/285 (9%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           C+      +          +PE         R+LDL KNR      + F    +L  L  
Sbjct: 9   CSAQDRA-VLCHRKRFV-AVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL 63

Query: 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY 254
           N N +    P +  N  NL+ L L +N++K         L  L  L +  NK    L D 
Sbjct: 64  NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLD- 121

Query: 255 EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTL 314
                   L+ L++ +N+    +    F  + ++  +    ++                 
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL--TLEKCN--------------- 163

Query: 315 IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD 374
            +     + +  L     + L   + +        +L+ L++L +S       +  +   
Sbjct: 164 -LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 375 LTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
             +L SL ++   L  V    +  L +L  LNLS N +   I   
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGS 266

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (296), Expect = 1e-28
 Identities = 47/284 (16%), Positives = 96/284 (33%), Gaps = 35/284 (12%)

Query: 130 IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNL 189
           I  +  N +  +I  ++++SL       +   + +++ LDL  N               L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 190 TTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249
             LN + N L       L + + L+ LDL NN +++     L     ++ L   +N    
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN--- 110

Query: 250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYE 309
            +            + + L+NN  T  L  +       +  +      N+          
Sbjct: 111 -ISRVSCS-RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD--LKLNE---------- 155

Query: 310 DSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP 369
             +  +   +       L     ++L  N  + ++   +     L+ L+LS N L+  + 
Sbjct: 156 --IDTVNFAELAASSDTL---EHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMG 207

Query: 370 SSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
                   +  + L +N L  +I + L     L   +L  N   
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (285), Expect = 3e-27
 Identities = 58/352 (16%), Positives = 108/352 (30%), Gaps = 63/352 (17%)

Query: 94  NLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
             +   +  + L+  +      + N++   +S N         +   + +E+L+LS+N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
             T+   + + S +LR LDL  N       +    G ++ TL+   N +   V  S    
Sbjct: 71  YETLD--LESLS-TLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSCSRGQ- 120

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
              + + L NNK+        G    +Q L L+ N+    +   E       L  L+L  
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQY 178

Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330
           N     +                                                     
Sbjct: 179 NFIY-DVKGQVV--------------------------------------------FAKL 193

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
            T+DLS N     +         +  ++L  N L   I  +L    +LE  DL  N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLS 442
              R+        V  +++  ++    +  +  T  +  + G       P  
Sbjct: 252 GTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (259), Expect = 8e-24
 Identities = 52/267 (19%), Positives = 94/267 (35%), Gaps = 37/267 (13%)

Query: 154 IPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL 213
           I E   N ++  ++  +  +     +        N+  L+ +GN L       L     L
Sbjct: 2   IHEIKQNGNR-YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 214 QVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNF 273
           ++L+L +N + +T    L +L  L+ L L +N     +++         +  L  +NNN 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNY----VQELLV---GPSIETLHAANNNI 111

Query: 274 TGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTI 333
           +  +     +  K +         NK                I           +    +
Sbjct: 112 S-RVSCSRGQGKKNIY-----LANNK----------------ITMLRDLDEGCRSRVQYL 149

Query: 334 DLSKNSFHG-EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           DL  N        EL     +L  LNL  N +  ++   +     L++LDLSSN L   +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FM 206

Query: 393 PRELTRLTFLAVLNLSRNKLEGRIPEG 419
             E      +  ++L  NKL   I + 
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKA 232

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  102 bits (255), Expect = 2e-23
 Identities = 45/322 (13%), Positives = 93/322 (28%), Gaps = 27/322 (8%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            ++E L   +N +     +     +   ++NNK            S ++ LDL  N +  
Sbjct: 99  PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
                +   S +L  L+L+ N  +    +       L TL+ + N+L   +     + A 
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           +  + L NNK+       L   + L+   LR N F+        D++    R+  ++   
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH---CGTLRDFFSKNQRVQTVAKQT 271

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
               L     +     T           + +   + +  + L  K               
Sbjct: 272 VK-KLTGQNEEECTVPTLGHY--GAYCCEDLPAPFADRLIALKRKEHA-----------L 317

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           +    +     +          R ++  +      I           +L+     L    
Sbjct: 318 LSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL---- 372

Query: 393 PRELTRLTFLAVLNLSRNKLEG 414
             E       A   L     + 
Sbjct: 373 -DEQVSNGRRAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 6e-14
 Identities = 41/328 (12%), Positives = 93/328 (28%), Gaps = 74/328 (22%)

Query: 90  LPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
           + +  L+ LDL SN L                        +     + + +  + L NN 
Sbjct: 188 VVFAKLKTLDLSSNKLA----------------------FMGPEFQSAAGVTWISLRNNK 225

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFH-GTIPETFPKGNNLTTLNFNGNELVGSVPRSLL 208
           L   I + +     +L   DLR N FH GT+ + F K   + T+     + +    ++  
Sbjct: 226 LV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL--TGQNEE 281

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY--EADYYFSKLRIL 266
            C    +   G    +D    +   L  L+          G   +         ++ R +
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI 341

Query: 267 DLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI 326
           D     +  ++        +A                                       
Sbjct: 342 DALKEQYR-TVIDQVTLRKQAK-------------------------------------- 362

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386
                T++  K +   ++         L    L Q +    +  +  + + L+ L     
Sbjct: 363 ----ITLEQKKKALDEQVSNGRRAHAELD-GTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

Query: 387 VLD-GVIPRELTRLTFLAVLNLSRNKLE 413
             +   + ++  +   +   ++ ++K  
Sbjct: 418 RYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.6 bits (178), Expect = 8e-14
 Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 37/221 (16%)

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD--YY 259
           ++     N    ++  + ++ +K        +   ++ L L  N     L    A     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP----LSQISAADLAP 56

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
           F+KL +L+LS+N           +++  +                        TL +   
Sbjct: 57  FTKLELLNLSSNVLY-ETLD--LESLSTLR-----------------------TLDLNNN 90

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
            V+ + +     T+  + N+    +     +    + + L+ N ++       G  + ++
Sbjct: 91  YVQELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 380 SLDLSSNVLDGVIPREL-TRLTFLAVLNLSRNKLEGRIPEG 419
            LDL  N +D V   EL      L  LNL  N +   +   
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (296), Expect = 2e-28
 Identities = 62/368 (16%), Positives = 113/368 (30%), Gaps = 56/368 (15%)

Query: 85  LGNKKLPWKNLEYLDLRSNLL---QGPVPAPSSNMRVFLISNNKFIGEIPRLI-CNTSTI 140
            G + +   N + +  +++ +      +      + +  +++ + I EI         TI
Sbjct: 43  FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTI 101

Query: 141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELV 200
           + L +  N++   +P  +      L VL L +N         F     LTTL+ + N L 
Sbjct: 102 QKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160

Query: 201 GSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYF 260
                +     +LQ L L +N++       L  +  L    +  N               
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-------STLAIP 210

Query: 261 SKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKR-- 318
             +  LD S+N+    +       +                            L ++   
Sbjct: 211 IAVEELDASHNSIN-VVRGPVNVELT--------------------------ILKLQHNN 243

Query: 319 -QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD 377
             +   +        +DLS N     +     K+  L  L +S N L   +      +  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 302

Query: 378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLC 437
           L+ LDLS N L   + R   +   L  L L  N +   +       T        NL L 
Sbjct: 303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST-HHTLK------NLTLS 353

Query: 438 GFPLSKNC 445
                 N 
Sbjct: 354 HNDWDCNS 361

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.4 bits (180), Expect = 6e-14
 Identities = 43/280 (15%), Positives = 85/280 (30%), Gaps = 63/280 (22%)

Query: 147 NNSLSGTIPECI---GNFSKSLRVLDLRKNRFHGTIPETFPKGN--NLTTLNFNGNELVG 201
             ++    PE      N        D+  +     +   F      N   + F  + +  
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD--YY 259
                L +   +++L+L + ++++   +       +Q L +  N     +R         
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVFQN 121

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
              L +L L  N+ + SLP   F N   +T                              
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLT------------------------------ 150

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
                       T+ +S N+      +      SL+ L LS N L+ ++   L  +  L 
Sbjct: 151 ------------TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLF 195

Query: 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
             ++S N+L       L     +  L+ S N +   +   
Sbjct: 196 HANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGP 229

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 25/188 (13%)

Query: 233 TLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIG 292
              ++ + +   + ++G       D   +  +I+   N+     LPA    + + +  + 
Sbjct: 28  VFYDVHIDMQTQDVYFGF-----EDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 293 EAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLH 352
              ++ +                I+  +            + +  N+     P +   + 
Sbjct: 82  --LNDLQ----------------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
            L +L L +N LS        +   L +L +S+N L+ +        T L  L LS N+L
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 413 EGRIPEGN 420
              +    
Sbjct: 184 T-HVDLSL 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (294), Expect = 3e-28
 Identities = 57/326 (17%), Positives = 121/326 (37%), Gaps = 13/326 (3%)

Query: 94  NLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLIC-NTSTIEILDLSNN 148
            ++ LDL  N +   +        +N++V ++ +++ I  I      +  ++E LDLS+N
Sbjct: 27  AMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN 84

Query: 149 SLSGTIPECIGNFSKSLRVLDLRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSVPR-S 206
            LS ++         SL+ L+L  N +    +   FP   NL TL     E    + R  
Sbjct: 85  HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 207 LLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRIL 266
                +L  L++    +++     L ++R++  L L  ++    L  +      S +R L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI--LSSVRYL 201

Query: 267 DLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI 326
           +L + N             +  + + + A                +   I          
Sbjct: 202 ELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386
            T+    D + +           +  ++R L++ Q  L  ++ +    L  ++ + + ++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 387 VLDGVIPRELTRLTFLAVLNLSRNKL 412
            +  V       L  L  L+LS N +
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (252), Expect = 7e-23
 Identities = 60/358 (16%), Positives = 117/358 (32%), Gaps = 35/358 (9%)

Query: 94  NLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
           NL+ L L+S+ +            ++    +S+N             S+++ L+L  N  
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 151 SGTIPECIGNFSK--SLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNGNELVGSVPRSL 207
             T+      F    +L+ L +        I    F    +L  L      L     +SL
Sbjct: 111 Q-TLGVT-SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG-HLRDYEADYYFSKLRIL 266
            +  ++  L L  ++       +   L  ++ L LR              D   S ++ L
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 267 DLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI 326
               +  T        K ++ + ++ E   ++ +      +      ++ +  +V+ + I
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 327 --------------------LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG 366
                               L     I +  +            L SL  L+LS+N++  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 367 NI---PSSLGDLTDLESLDLSSNVLD--GVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
                 +  G    L++L LS N L         L  L  L  L++SRN     +P+ 
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.6 bits (246), Expect = 5e-22
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 53/281 (18%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
            +     + D  + S + +IP      + +++ LDL  N+             NL  L  
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY 254
             + +      +  +  +L+ LDL +N +      W G L  L+ L L  N      +  
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP----YQTL 113

Query: 255 EADYYFSK---LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDS 311
                F     L+ L + N      +  + F  + ++                       
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL----------------------- 150

Query: 312 VTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSS 371
                                +++   S      + +  +  +  L L  +  +  +   
Sbjct: 151 -------------------NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 372 LGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
              L+ +  L+L    L       L      + +     + 
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.8 bits (236), Expect = 7e-21
 Identities = 63/345 (18%), Positives = 111/345 (32%), Gaps = 56/345 (16%)

Query: 93  KNLEYLDLRSNLLQ----GPVPAPSSNMRVFLISNN---------KFIGEIPRLICNTST 139
            ++ YL+LR   L      P+P    +  +  ++             + ++ R I   S 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 140 IEILDLSNNSLSGTIPECIGNFSK-------SLRVLDLRKNRFHGTIPETFPKGNNLTTL 192
           +E  D + N L    P      S+       ++R L + +      +   +     +  +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHW---LGTLRELQVLILRSNKFYG 249
               +++         +  +L+ LDL  N M + +       G    LQ L+L  N    
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYE 309
             +  E       L  LD+S N F   +P       + M                     
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMR-------------------- 413

Query: 310 DSVTLII--KRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
               L +      V    I      +D+S N+    +      L  L+ L +S+N L   
Sbjct: 414 ---FLNLSSTGIRVVKTCIPQTLEVLDVSNNN----LDSFSLFLPRLQELYISRNKLK-T 465

Query: 368 IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           +P +      L  + +S N L  V      RLT L  + L  N  
Sbjct: 466 LPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 47/339 (13%), Positives = 103/339 (30%), Gaps = 52/339 (15%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            +L+YL+L  N  Q              +        +  L       + L + N     
Sbjct: 98  SSLKYLNLMGNPYQT-------------LGVTSLFPNLTNL-------QTLRIGNVETFS 137

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
            I         SL  L+++         ++     ++  L  + +E    +       ++
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           ++ L+L +  +       L        +   + +                  + D S N 
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR---------------GSVLTDESFNE 242

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
               L  +   +     D            +G+    +S  +     E+  ++ +TI   
Sbjct: 243 LLKLLRYILELSEVEFDD-------CTLNGLGDFNPSESDVV----SELGKVETVTI-RR 290

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLSSNVLDGV 391
           + + +     ++  +   L  ++ + +  + +   +P S    L  LE LDLS N++   
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 392 IPRE---LTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
             +          L  L LS+N L      G    T  +
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.1 bits (229), Expect = 5e-20
 Identities = 52/303 (17%), Positives = 94/303 (31%), Gaps = 62/303 (20%)

Query: 90  LPWKNLEYLDL-RSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN 148
                L   +   S+++       +  +R   I       ++  +      ++ + + N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 149 SLSGTIPECIGNFSKSLRVLDLRKNRF-HGTIPETFPKGN--NLTTLNFNGNEL--VGSV 203
            +   +P       KSL  LDL +N      +  +  KG   +L TL  + N L  +   
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 204 PRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKL 263
              LL   NL  LD+  N      P       +++ L L S      +R  +       L
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST----GIRVVKTCI-PQTL 433

Query: 264 RILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
            +LD+SNNN                                                   
Sbjct: 434 EVLDVSNNNLD-----------------------------------------------SF 446

Query: 324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDL 383
              L     + +S+N     +P+       L ++ +S+N L          LT L+ + L
Sbjct: 447 SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

Query: 384 SSN 386
            +N
Sbjct: 505 HTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 65/404 (16%), Positives = 137/404 (33%), Gaps = 71/404 (17%)

Query: 93  KNLEYLDLRSN----LLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN 148
            NL+ L + +      ++    A  +++    I          + + +   I  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG------- 201
             +  + E   +   S+R L+LR            P     + +                
Sbjct: 183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 202 ---SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRE---LQVLILRSNKFYGHLRDYE 255
               + R +L  + ++  D   N + D  P     + E   ++ + +R          Y+
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 256 ADYYFS---KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSV 312
               +S   K++ + + N+     +P  F +++K++  +  + +    +Y+  +  + + 
Sbjct: 302 LSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 313 TLIIKRQEVKLMKILTIFTTIDLSKNSFH--GEIPELMGKLHSLRLLNLSQNILSGNIPS 370
             +                T+ LS+N      +  E++  L +L  L++S+N     +P 
Sbjct: 361 PSL---------------QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 371 SLGDLTDLESLDLSSN---VLDGVIPRELT--------------RLTFLAVLNLSRNKLE 413
           S      +  L+LSS    V+   IP+ L                L  L  L +SRNKL+
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK 464

Query: 414 GRIPEG-------------NQFATFSSDSYGGNLGLCGFPLSKN 444
             +P+              NQ  +     +     L    L  N
Sbjct: 465 -TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.8 bits (179), Expect = 7e-14
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 16/162 (9%)

Query: 92  WKNLEYLDLRSNLLQ-----GPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLS 146
           W +L+ L L  N L+     G +     N+    IS N     +P        +  L+LS
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLS 418

Query: 147 NNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRS 206
           +  +   +  CI    ++L VLD+  N    +     P    L  L  + N+L  ++P +
Sbjct: 419 STGIR-VVKTCI---PQTLEVLDVSNNNL-DSFSLFLP---RLQELYISRNKLK-TLPDA 469

Query: 207 LLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248
            L    L V+ +  N++K         L  LQ + L +N + 
Sbjct: 470 SL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
            ++DLS N         +    +L++L L  + ++     +   L  LE LDLS N L  
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
           +       L+ L  LNL  N  +  +   + F   ++
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTN 124

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           +  + +      + +IPS L     ++SLDLS N +  +   +L     L VL L  +++
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 413 EGRIPEG 419
              I   
Sbjct: 63  N-TIEGD 68

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (286), Expect = 2e-27
 Identities = 74/330 (22%), Positives = 125/330 (37%), Gaps = 46/330 (13%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
            NL  L L +N +    P    +N+    +S+N  I +I  L    ++++ L   N  ++
Sbjct: 112 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT-ISDISAL-SGLTSLQQLSFGNQ-VT 168

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
              P  + N   +L  LD+  N+   +      K  NL +L    N++    P  L    
Sbjct: 169 DLKP--LANL-TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILT 221

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
           NL  L L  N++KD     L +L  L  L L +N+    + +       +KL  L L  N
Sbjct: 222 NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ----ISNLAPLSGLTKLTELKLGAN 275

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
             +   P      + A+T++    +EN+               +     +  +K LT   
Sbjct: 276 QISNISP---LAGLTALTNLE--LNENQ---------------LEDISPISNLKNLT--- 312

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
            + L  N+     P  +  L  L+ L    N +S    SSL +LT++  L    N +  +
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDL 368

Query: 392 IPRELTRLTFLAVLNLSRNKLEGRIPEGNQ 421
            P  L  LT +  L L+             
Sbjct: 369 TP--LANLTRITQLGLNDQAWTNAPVNYKA 396

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  112 bits (283), Expect = 5e-27
 Identities = 71/329 (21%), Positives = 121/329 (36%), Gaps = 46/329 (13%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS-SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             +  L      ++        +N+     SNN+     P  + N + +  + ++NN ++
Sbjct: 46  DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
              P  + N +  L  L L  N+   T  +      NL  L  + N +  S   +L    
Sbjct: 104 DITP--LANLTN-LTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTI--SDISALSGLT 156

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
           +LQ L  GN    D  P  L  L  L+ L + SNK    + D       + L  L  +NN
Sbjct: 157 SLQQLSFGNQV-TDLKP--LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNN 209

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
             +   P      +  + ++    + N+               +     +  +  LT   
Sbjct: 210 QISDITP---LGILTNLDELS--LNGNQ---------------LKDIGTLASLTNLT--- 246

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
            +DL+ N      P  +  L  L  L L  N +S    S L  LT L +L+L+ N L+ +
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI 302

Query: 392 IPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
            P  ++ L  L  L L  N +    P  +
Sbjct: 303 SP--ISNLKNLTYLTLYFNNISDISPVSS 329

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (278), Expect = 2e-26
 Identities = 73/323 (22%), Positives = 124/323 (38%), Gaps = 46/323 (14%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
            NL  ++  +N L    P    + +   L++NN+     P  + N + +  L L NN ++
Sbjct: 68  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
              P  + N   +L  L+L  N    +         +L  L+F  N++    P  L N  
Sbjct: 126 DIDP--LKNL-TNLNRLELSSNTI--SDISALSGLTSLQQLSFG-NQVTDLKP--LANLT 177

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
            L+ LD+ +NK+ D     L  L  L+ LI  +N+    + D       + L  L L+ N
Sbjct: 178 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQ----ISDITPLGILTNLDELSLNGN 231

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
                +      ++  +TD+      N+               I     +  +  L   T
Sbjct: 232 QLK-DIGT--LASLTNLTDLD--LANNQ---------------ISNLAPLSGLTKL---T 268

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
            + L  N     I  L   L +L  L L++N L    P  + +L +L  L L  N +  +
Sbjct: 269 ELKLGANQISN-ISPL-AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324

Query: 392 IPRELTRLTFLAVLNLSRNKLEG 414
            P  ++ LT L  L    NK+  
Sbjct: 325 SP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (268), Expect = 4e-25
 Identities = 73/329 (22%), Positives = 118/329 (35%), Gaps = 46/329 (13%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
                  L    +   V       +          I  I   +   + +  ++ SNN L+
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLT 81

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
              P  + N +K L  + +  N+     P       NLT L    N++    P  L N  
Sbjct: 82  DITP--LKNLTK-LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
           NL  L+L +N + D     L  L  LQ L   +      + D +     + L  LD+S+N
Sbjct: 135 NLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ-----VTDLKPLANLTTLERLDISSN 187

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
             +  +       +  +  +   A  N+               I     + ++  L    
Sbjct: 188 KVS-DISV--LAKLTNLESLI--ATNNQ---------------ISDITPLGILTNL---D 224

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
            + L+ N    +I  L   L +L  L+L+ N +S   P  L  LT L  L L +N +  +
Sbjct: 225 ELSLNGNQLK-DIGTL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 392 IPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
            P  L  LT L  L L+ N+LE   P  N
Sbjct: 281 SP--LAGLTALTNLELNENQLEDISPISN 307

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 99.7 bits (249), Expect = 1e-22
 Identities = 70/325 (21%), Positives = 114/325 (35%), Gaps = 45/325 (13%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            NL  L+L SN +              L   N+     P  + N +T+E LD+S+N +S 
Sbjct: 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD 191

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
                +     +L  L    N+     P       NL  L+ NGN+L      +L +  N
Sbjct: 192 --ISVLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTN 244

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L  LDL NN++ +  P  L  L +L  L L +N+    + +       + L  L+L+ N 
Sbjct: 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQ----ISNISPLAGLTALTNLELNENQ 298

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
                P     N+K +T +      N                I     V  +  L     
Sbjct: 299 LEDISP---ISNLKNLTYLT--LYFNN---------------ISDISPVSSLTKLQ---R 335

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           +    N     +  L   L ++  L+   N +S   P  L +LT +  L L+        
Sbjct: 336 LFFYNNKVSD-VSSL-ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391

Query: 393 PRELTRLTFLAVLNLSRNKLEGRIP 417
                 ++   + N  +N     I 
Sbjct: 392 VNYKANVS---IPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 5e-21
 Identities = 58/328 (17%), Positives = 107/328 (32%), Gaps = 46/328 (14%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             LE LD+ SN +      A  +N+   + +NN+     P  +   + ++ L L+ N L 
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234

Query: 152 GTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
                 IG  +   +L  LDL  N+     P        LT L    N++    P  L  
Sbjct: 235 D-----IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
              L  L+L  N+++D  P  +  L+ L  L L  N     + D       +KL+ L   
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN----ISDISPVSSLTKLQRLFFY 339

Query: 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329
           NN  +         N+  +  +   A  N+               I     +  +  +T 
Sbjct: 340 NNKVSDVSS---LANLTNINWLS--AGHNQ---------------ISDLTPLANLTRIT- 378

Query: 330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD 389
              + L+  ++          +     +      L    P+++ D       D++ N+  
Sbjct: 379 --QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS 434

Query: 390 GVIPRELTRLTFLAVLNLSRNKLEGRIP 417
                     +    +        G + 
Sbjct: 435 Y-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 48/209 (22%), Positives = 75/209 (35%), Gaps = 36/209 (17%)

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
           +    A      LG   + DT       L ++  L          ++  +   Y + L  
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQ 72

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           ++ SNN  T   P    KN+  + DI    + N+               I     +  + 
Sbjct: 73  INFSNNQLTDITP---LKNLTKLVDIL--MNNNQ---------------IADITPLANLT 112

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
            L   T + L  N      P  +  L +L  L LS N +S    S+L  LT L+ L   +
Sbjct: 113 NL---TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN 165

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
            V D    + L  LT L  L++S NK+  
Sbjct: 166 QVTD---LKPLANLTTLERLDISSNKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 33/175 (18%)

Query: 240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK 299
            I +       +     D   ++     L   N T ++      ++  +T +   AD   
Sbjct: 7   TITQDTP----INQIFTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQ--ADRLG 57

Query: 300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNL 359
                          I     V+ +  LT    I+ S N     I  L   L  L  + +
Sbjct: 58  ---------------IKSIDGVEYLNNLT---QINFSNNQLTD-ITPL-KNLTKLVDILM 97

Query: 360 SQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
           + N ++    + L +LT+L  L L +N +  + P  L  LT L  L LS N +  
Sbjct: 98  NNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 350 KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR 409
            L       L +  ++  +     DL  + +L      +       +  L  L  +N S 
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSN 77

Query: 410 NKLEGRIP 417
           N+L    P
Sbjct: 78  NQLTDITP 85

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 3e-26
 Identities = 66/363 (18%), Positives = 121/363 (33%), Gaps = 64/363 (17%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
                L++  + L        +++   +I +N  +  +P L      +  L++S N L+ 
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNN-LTSLPALPPE---LRTLEVSGNQLT- 94

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
           ++P         L +                     L  L   GN+L  S+P        
Sbjct: 95  SLPVLPPGL-LELSIFSNPLTHLPALPS-------GLCKLWIFGNQL-TSLPVLP---PG 142

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           LQ L + +N++  + P     L +L      +N+    L         S L+ L +S+N 
Sbjct: 143 LQELSVSDNQL-ASLPALPSELCKLW---AYNNQ----LTSLPML--PSGLQELSVSDNQ 192

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
              SLP +    +  +      A  N+                       L  + +    
Sbjct: 193 LA-SLPTL-PSELYKLW-----AYNNRLT--------------------SLPALPSGLKE 225

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           + +S N     +P L      L+ L +S N L+ ++P     L    SL +  N L   +
Sbjct: 226 LIVSGNRL-TSLPVLPS---ELKELMVSGNRLT-SLPMLPSGLL---SLSVYRNQLT-RL 276

Query: 393 PRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSNDEPPQ 452
           P  L  L+    +NL  N L  R  +  +  T S+  Y G +       +          
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREIT-SAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 453 SSS 455
            ++
Sbjct: 336 LAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (258), Expect = 2e-23
 Identities = 55/285 (19%), Positives = 96/285 (33%), Gaps = 62/285 (21%)

Query: 134 ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN 193
            C  +   +L++  + L+ T+P+C+      +  L +  N    ++P   P    L TL 
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPP---ELRTLE 87

Query: 194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRD 253
            +GN+L  S+P        L +            P     L +L    +  N+    L  
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLW---IFGNQ----LTS 135

Query: 254 YEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVT 313
                    L+ L +S+N    SLPA+    +  +      A  N+              
Sbjct: 136 LPVL--PPGLQELSVSDNQLA-SLPAL-PSELCKLW-----AYNNQLT------------ 174

Query: 314 LIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG 373
                    L  + +    + +S N     +P L  +L+ L   N     L         
Sbjct: 175 --------SLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG--- 222

Query: 374 DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
               L+ L +S N L   +P   + L     L +S N+L   +P 
Sbjct: 223 ----LKELIVSGNRL-TSLPVLPSELK---ELMVSGNRLT-SLPM 258

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 3e-15
 Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 19/194 (9%)

Query: 83  KLLGNK--KLP--WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTS 138
               N+   LP     L+ L +  N L   +P   S +      NN+    +P L     
Sbjct: 167 WAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPALPSG-- 222

Query: 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE 198
            ++ L +S N L+ ++P         L+ L +  NR   ++P        L +L+   N+
Sbjct: 223 -LKELIVSGNRLT-SLPVLPSE----LKELMVSGNRL-TSLPMLPS---GLLSLSVYRNQ 272

Query: 199 LVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY 258
           L   +P SL++ ++   ++L  N + +     L  +           +F         + 
Sbjct: 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

Query: 259 YFSKLRILDLSNNN 272
               L   D     
Sbjct: 332 RALHLAAADWLVPA 345

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  111 bits (279), Expect = 3e-26
 Identities = 65/354 (18%), Positives = 125/354 (35%), Gaps = 26/354 (7%)

Query: 93  KNLEYLDLRSNLLQG---PVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
            +L  L L  N +Q       +  S+++  +             I +  T++ L++++N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 150 L-SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT----TLNFNGNELVGSVP 204
           + S  +PE   N + +L  LDL  N+            + +     +L+ + N +   + 
Sbjct: 136 IQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQ 193

Query: 205 RSLLNCANLQVLDLGNNKMK-DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY-YFSK 262
                   L  L L NN    +     +  L  L+V  L   +F       + D      
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 263 LR-----ILDLSNNNFTGSLPAMFFKNMKAMT--DIGEAADENKSKYMGETYYEDSVTLI 315
           L         L+  ++        F  +  ++   +     E    +     ++    + 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 316 IKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS--GNIPSSLG 373
            K  +   +K L     +  + N       E+   L SL  L+LS+N LS  G    S  
Sbjct: 314 CKFGQFPTLK-LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 374 DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
             T L+ LDLS N +   +      L  L  L+   + L+ ++ E + F +  +
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRN 422

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (274), Expect = 1e-25
 Identities = 63/357 (17%), Positives = 121/357 (33%), Gaps = 34/357 (9%)

Query: 94  NLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
           + + LDL  N L+  + + S      ++V  +S  +          + S +  L L+ N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL-VGSVPRSLL 208
           +  ++     +   SL+ L   +                L  LN   N +    +P    
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS-KLRILD 267
           N  NL+ LDL +NK++  +   L  L ++ +L L  +     +   +   +   +L  L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 268 LSNNNFTGSLPAMFFKNMKAMT----DIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
           L NN  + ++     + +  +      +GE  +E   +   ++  E    L I+   +  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 324 MKI-----------LTIFTTIDLSKNSFHGEIPEL--MGKLHSLRLLNLSQNILSGNIPS 370
           +             LT  ++  L   +    + +         L L+N            
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLK-- 323

Query: 371 SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
               L  L+ L  +SN            L  L  L+LSRN L  +          +S
Sbjct: 324 ----LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (267), Expect = 1e-24
 Identities = 65/331 (19%), Positives = 114/331 (34%), Gaps = 57/331 (17%)

Query: 85  LGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILD 144
           L N  +    L YLD   + +   +    +N+  F + +   I  +     N    + L+
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVT-IERVKDFSYNFG-WQHLE 310

Query: 145 LSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL--VGS 202
           L N       P       KSL+ L    N+      E      +L  L+ + N L   G 
Sbjct: 311 LVNCKFGQ-FPT---LKLKSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFKGC 364

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK 262
             +S     +L+ LDL  N +  T       L +L+ L  + +     + ++        
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRN 422

Query: 263 LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322
           L  LD+S+ +         F  + ++                                  
Sbjct: 423 LIYLDISHTHTR-VAFNGIFNGLSSLE--------------------------------- 448

Query: 323 LMKILTIFTTIDLSKNSFHGEI-PELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESL 381
                     + ++ NSF     P++  +L +L  L+LSQ  L    P++   L+ L+ L
Sbjct: 449 ---------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 382 DLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           +++SN L  V      RLT L  + L  N  
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (266), Expect = 1e-24
 Identities = 53/300 (17%), Positives = 98/300 (32%), Gaps = 53/300 (17%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            N+    L S  ++       +     L   N   G+ P L     +++ L  ++N    
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGN 339

Query: 153 TIPECIGNFSKSLRVLDLRKNRFH--GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
                      SL  LDL +N     G   ++     +L  L+ + N ++ ++  + L  
Sbjct: 340 AFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 211 ANLQVLDLGNNKMKDTFPHW-LGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
             L+ LD  ++ +K         +LR L  L +        +         S L +L ++
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMA 453

Query: 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329
            N+F  +     F  ++ +                                         
Sbjct: 454 GNSFQENFLPDIFTELRNL----------------------------------------- 472

Query: 330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD 389
            T +DLS+       P     L SL++LN++ N L          LT L+ + L +N  D
Sbjct: 473 -TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (261), Expect = 5e-24
 Identities = 64/347 (18%), Positives = 113/347 (32%), Gaps = 27/347 (7%)

Query: 93  KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKF-IGEIPRLICNTSTIEILDLSNN 148
            +L+ L      L      P      ++   +++N     ++P    N + +E LDLS+N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 149 SLSGTIPECIGNFSK---SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
            +       +    +       LDL  N  +   P  F K   L  L    N    +V +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMK 218

Query: 206 SLL-NCANLQVLDL------GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRD-YEAD 257
           + +   A L+V  L          ++      L  L  L +   R      +L D  +  
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 258 YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYED--SVTLI 315
              + +    L +          +    + +  +     +  +  +         S    
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 316 IKRQEVKLMKILTIFTTIDLSKN--SFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG 373
               EV L  +      +DLS+N  SF G   +      SL+ L+LS N +   + S+  
Sbjct: 339 NAFSEVDLPSL----EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 374 DLTDLESLDLSSNVLDGVIPRE-LTRLTFLAVLNLSRNKLEGRIPEG 419
            L  LE LD   + L  +        L  L  L++S          G
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNG 439

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (256), Expect = 2e-23
 Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 17/200 (8%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSS-----NMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
            +LE+LDL  N L        S     +++   +S N  +  +         +E LD  +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQH 405

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
           ++L       +    ++L  LD+            F   ++L  L   GN    +    +
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 208 L-NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY----GHLRDYEADYYFSK 262
                NL  LDL   +++   P    +L  LQVL + SN+      G           + 
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR------LTS 519

Query: 263 LRILDLSNNNFTGSLPAMFF 282
           L+ + L  N +  S P + +
Sbjct: 520 LQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 59/306 (19%), Positives = 98/306 (32%), Gaps = 53/306 (17%)

Query: 115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR 174
           N+    +  N    +IP  +    + + LDLS N L         +F + L+VLDL +  
Sbjct: 9   NITYQCMELN--FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCE 63

Query: 175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTL 234
                   +   ++L+TL   GN +      +    ++LQ L      +       +G L
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEA 294
           + L+ L +  N      +  E     + L  LDLS+N    S+     + +  M      
Sbjct: 124 KTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP----- 176

Query: 295 ADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSL 354
                                             +  ++DLS N  +  I     K   L
Sbjct: 177 ---------------------------------LLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 355 RLLNLSQNILSGNIPS-SLGDLTDLESLDL------SSNVLDGVIPRELTRLTFLAVLNL 407
             L L  N  S N+    +  L  LE   L      +   L+      L  L  L +   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 408 SRNKLE 413
               L+
Sbjct: 263 RLAYLD 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 51/341 (14%), Positives = 98/341 (28%), Gaps = 68/341 (19%)

Query: 94  NLEYLDLRSNLLQGPVPAP----------SSNMRVFLISNNKFIGEIPRLICNTSTIEIL 143
            L  L LR+N     V                +     +           +     + I 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 144 DLSNNSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG 201
           +     L   + + I  F+   ++    L           ++        L     +   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQ 318

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS 261
                 L   +L+ L   +NK  + F      L  L+ L L  N         ++D+  +
Sbjct: 319 F---PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEV 321
            L+ LDLS N    ++ + F                                        
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLG-------------------------------------- 394

Query: 322 KLMKILTIFTTIDLSKNSFHGEIPE--LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
            L ++      +D   ++   ++ E  +   L +L  L++S              L+ LE
Sbjct: 395 -LEQL----EHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 380 SLDLSSNVLDGVIPRE-LTRLTFLAVLNLSRNKLEGRIPEG 419
            L ++ N        +  T L  L  L+LS+ +LE ++   
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 49/235 (20%), Positives = 82/235 (34%), Gaps = 54/235 (22%)

Query: 190 TTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG 249
            T           +P +L    + + LDL  N ++    +   +  ELQVL L   +   
Sbjct: 10  ITYQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-Q 65

Query: 250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYE 309
            + D  A    S L  L L+ N    SL    F  + ++                     
Sbjct: 66  TIED-GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ-------------------- 103

Query: 310 DSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNIL-SGNI 368
                                  +   + +        +G L +L+ LN++ N++ S  +
Sbjct: 104 ----------------------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 369 PSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFL----AVLNLSRNKLEGRIPEG 419
           P    +LT+LE LDLSSN +  +   +L  L  +      L+LS N +   I  G
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 44/168 (26%)

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
               + LDLS N     L +  F +                                   
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFS----------------------------------- 50

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
                        +DLS+             L  L  L L+ N +      +   L+ L+
Sbjct: 51  -------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
            L      L  +    +  L  L  LN++ N ++        F+  ++
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN 150

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 3e-24
 Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 61/326 (18%)

Query: 88  KKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
           +    +    L+L +  L   +P    ++   + S N  + E+P L  +  ++ + + + 
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNL 123

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
            +LS   P         L  L +  N+    +PE     + L  ++ + N L   +P   
Sbjct: 124 KALSDLPP--------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLP 172

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILD 267
               +L+ +  GNN+++   P  L  L  L  +   +N         +       L  + 
Sbjct: 173 ---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSL------KKLPDLPLSLESIV 221

Query: 268 LSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL 327
             NN     LP    +N+  +T I   AD N  K                     L  + 
Sbjct: 222 AGNNILE-ELPE--LQNLPFLTTIY--ADNNLLK--------------------TLPDLP 256

Query: 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNV 387
                +++  N    ++PEL   L  L +     + LS   P+       L  L+ SSN 
Sbjct: 257 PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNE 308

Query: 388 LDGVIPRELTRLTFLAVLNLSRNKLE 413
           +   +      L     LN+S NKL 
Sbjct: 309 IR-SLCDLPPSLE---ELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (251), Expect = 6e-23
 Identities = 65/315 (20%), Positives = 108/315 (34%), Gaps = 60/315 (19%)

Query: 93  KNLEYLDLRSNLLQG-PVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             LEYL + +N L+  P    SS +++  + NN  + ++P L  +   +E +   NN L 
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPS---LEFIAAGNNQLE 186

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
             +PE + N    L  +    N     +P+      +L ++    N L       L N  
Sbjct: 187 -ELPE-LQNL-PFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNIL--EELPELQNLP 237

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
            L  +   NN +K T P    +L  L V                       L  LD+S N
Sbjct: 238 FLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL---------PELPQSLTFLDVSEN 287

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
            F+  L      N+  +      A  N+ +                     L  +     
Sbjct: 288 IFS-GLSE-LPPNLYYLN-----ASSNEIR--------------------SLCDLPPSLE 320

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
            +++S N    E+P L  +L     L  S N L+  +P    +L     L +  N L   
Sbjct: 321 ELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLR-E 371

Query: 392 IPRELTRLTFLAVLN 406
            P     +  L + +
Sbjct: 372 FPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 63/342 (18%), Positives = 101/342 (29%), Gaps = 93/342 (27%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLI----------------SNNKFIGEIPRLICN 136
           K+        +  +   P  +   R   +                +N   +  +P L  +
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPH 92

Query: 137 TSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196
              +E L  S NSL+  +PE   +  KSL V +          P        L  L  + 
Sbjct: 93  ---LESLVASCNSLT-ELPELPQSL-KSLLVDNNNLKALSDLPP-------LLEYLGVSN 140

Query: 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEA 256
           N+L   +P  L N + L+++D+ NN +K   P    +L  +      +N+    L + + 
Sbjct: 141 NQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIA---AGNNQL-EELPELQN 193

Query: 257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLII 316
                 L  +   NN+    LP +                                    
Sbjct: 194 ---LPFLTAIYADNNSLK-KLPDLPLS--------------------------------- 216

Query: 317 KRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT 376
                          +I    N    E+PEL   L  L  +    N+L   +P     L 
Sbjct: 217 -------------LESIVAGNNILE-ELPEL-QNLPFLTTIYADNNLLK-TLPDLPPSLE 260

Query: 377 DLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
            L   D     L    P     LTFL V     + L    P 
Sbjct: 261 ALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.7 bits (236), Expect = 6e-21
 Identities = 57/343 (16%), Positives = 108/343 (31%), Gaps = 90/343 (26%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             L+ +D+ +N L+  +P    ++      NN+ + E+P  + N   +  +   NNSL  
Sbjct: 153 SFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNNSLK- 208

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
            +P+   +    L  +    N               LTT+  + N L  ++P       +
Sbjct: 209 KLPDLPLS----LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLP---PS 258

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L+ L++ +N +    P    +L  L V     +                 L  L+ S+N 
Sbjct: 259 LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGL---------SELPPNLYYLNASSNE 308

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF-- 330
              SL         ++ ++      NK                           L     
Sbjct: 309 IR-SLCD----LPPSLEELN--VSNNK---------------------------LIELPA 334

Query: 331 -----TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD-------- 377
                  +  S N    E+PEL     +L+ L++  N L    P     + D        
Sbjct: 335 LPPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 378 --------LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
                   L+ L + +N L    P     +     L ++  ++
Sbjct: 390 EVPELPQNLKQLHVETNPLR-EFPDIPESVE---DLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.0 bits (229), Expect = 4e-20
 Identities = 58/300 (19%), Positives = 89/300 (29%), Gaps = 60/300 (20%)

Query: 120 LISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTI 179
            + ++  + E+P    N  +      + +      P   G   + + V  LR        
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMAVSRLRDCLD---- 70

Query: 180 PETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQV 239
                       L  N   L  S+P       +L+ L    N +    P    +L+ L V
Sbjct: 71  -------RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK 299
                                  L  L +SNN     LP    +N   +  I    D N 
Sbjct: 119 DNNNLKALSDLP---------PLLEYLGVSNNQLE-KLPE--LQNSSFLKIID--VDNNS 164

Query: 300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNL 359
            K                    KL  +      I    N    E+PEL   L  L  +  
Sbjct: 165 LK--------------------KLPDLPPSLEFIAAGNNQLE-ELPEL-QNLPFLTAIYA 202

Query: 360 SQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
             N L   +P        LES+   +N+L+     EL  L FL  +    N L+  +P+ 
Sbjct: 203 DNNSLK-KLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL 255

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 60/320 (18%), Positives = 102/320 (31%), Gaps = 84/320 (26%)

Query: 94  NLEYLDLRSNLLQGPVPAPS-SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           +LE +   +N+L+      +   +      NN  +  +P L  +   +E L++ +N L+ 
Sbjct: 216 SLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLPPS---LEALNVRDNYLT- 270

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
            +PE   +    L  LD+ +N F   + E  P   NL  LN + NE+  S+        +
Sbjct: 271 DLPELPQS----LTFLDVSENIFS-GLSELPP---NLYYLNASSNEIR-SLCDLP---PS 318

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L+ L++ NNK+    P     L   + LI   N         E       L+ L +  N 
Sbjct: 319 LEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA------EVPELPQNLKQLHVEYNP 368

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
                P                                                    + 
Sbjct: 369 LR-EFPD------------------------------------------------IPESV 379

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
            DL  NS   E+PEL     +L+ L++  N L    P     +   E L ++S  +    
Sbjct: 380 EDLRMNSHLAEVPEL---PQNLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPY 432

Query: 393 PRELTRLTFLAVLNLSRNKL 412
                    L       +  
Sbjct: 433 EFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 31/170 (18%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            NL YL+  SN ++  +     ++    +SNNK I E+P L      +E L  S N L+ 
Sbjct: 297 PNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA- 350

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPK----------------GNNLTTLNFNG 196
            +PE   N    L+ L +  N      P+                      NL  L+   
Sbjct: 351 EVPELPQN----LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
           N L    P       +++ L + + ++ D +     T  +L+  +   + 
Sbjct: 406 NPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 43/246 (17%), Positives = 71/246 (28%), Gaps = 82/246 (33%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
            L     + + L   +P    N  +        ++ +   P   G  RE+ V  LR    
Sbjct: 12  FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
                         +   L+L+N   + SLP +                           
Sbjct: 71  -------------RQAHELELNNLGLS-SLPELPPH------------------------ 92

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
                                   ++  S NS   E+PEL   L SL + N +   LS  
Sbjct: 93  ----------------------LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 368 IPS---------------SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
            P                 L + + L+ +D+ +N L   +P     L     +    N+L
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQL 185

Query: 413 EGRIPE 418
           E  +PE
Sbjct: 186 E-ELPE 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           +NL+ L +  N L+   P    ++    ++++  + E+P L  N   ++ L +  N L  
Sbjct: 357 QNLKQLHVEYNPLRE-FPDIPESVEDLRMNSH--LAEVPELPQN---LKQLHVETNPLR- 409

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL 199
             P+   +    +  L +   R            + L    F  +  
Sbjct: 410 EFPDIPES----VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 19/105 (18%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD--------- 377
            T         ++   E+P     + S      + +    N P   G+  +         
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 378 ----LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
                  L+L++  L   +P     L     L  S N L   +PE
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPE 108

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 3e-24
 Identities = 59/306 (19%), Positives = 103/306 (33%), Gaps = 59/306 (19%)

Query: 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS 202
           +     +L   +P+     S + R+L+L +N+       +F    +L  L  + N +   
Sbjct: 48  VICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD--YYF 260
              +    ANL  L+L +N++          L +L+ L LR+N     +    +      
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN----PIESIPSYAFNRI 159

Query: 261 SKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQE 320
             LR LDL        +    F+ +  +                                
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNL-------------------------------- 187

Query: 321 VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLES 380
                       ++L+  +   EIP L   L  L  L+LS N LS   P S   L  L+ 
Sbjct: 188 ----------RYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP 440
           L +  + +  +       L  L  +NL+ N L   +P       F+   +   + L   P
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD----LFTPLHHLERIHLHHNP 290

Query: 441 LSKNCS 446
            + NC 
Sbjct: 291 WNCNCD 296

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 6e-19
 Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 20/208 (9%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPR-LICNTSTIEILDLSNN 148
           ++LE L L  N ++          +N+    + +N+ +  IP       S ++ L L NN
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN 146

Query: 149 SLSGTIPECIGNFS--KSLRVLDL-RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
            +  +IP     F+   SLR LDL    R        F   +NL  LN     L   +P 
Sbjct: 147 PIE-SIPS--YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD--YYFSKL 263
           +L     L  LDL  N +    P     L  LQ L +  +     ++  E +       L
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS----QIQVIERNAFDNLQSL 257

Query: 264 RILDLSNNNFTGSLPAMFFKNMKAMTDI 291
             ++L++NN T  LP   F  +  +  I
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERI 284

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 11/158 (6%)

Query: 94  NLEYLDLRSNLL---QGPVPAPSSNMRVFLISNNKFIGEIPRLI-CNTSTIEILDLSNNS 149
            L+ L LR+N +            ++R   +   K +  I        S +  L+L+  +
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 150 LSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
           L       I N +    L  LDL  N      P +F    +L  L    +++      + 
Sbjct: 197 LRE-----IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245
            N  +L  ++L +N +          L  L+ + L  N
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%)

Query: 187 NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
           N  + +      L   VP  +    N ++L+L  N+++    +    LR L++L L  N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN- 98

Query: 247 FYGHLRDYEAD--YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG 304
              H+R  E       + L  L+L +N  T ++P   F  +  +                
Sbjct: 99  ---HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK--------------- 139

Query: 305 ETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNI 363
                                       + L  N     IP     ++ SLR L+L +  
Sbjct: 140 ---------------------------ELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171

Query: 364 LSGNIPS-SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
               I   +   L++L  L+L+   L   IP  LT L  L  L+LS N L   I  G
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPG 225

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 21/190 (11%)

Query: 94  NLEYLDLRSNLLQGPVPA----PSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLS-N 147
           NL  L+L  N L   +P       S ++   + NN  I  IP        ++  LDL   
Sbjct: 113 NLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL 170

Query: 148 NSLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
             LS  I E  G F    +LR L+L        IP        L  L+ +GN L    P 
Sbjct: 171 KRLS-YISE--GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPG 225

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY--FSKL 263
           S     +LQ L +  ++++    +    L+ L  + L  N     L     D +     L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN----LTLLPHDLFTPLHHL 281

Query: 264 RILDLSNNNF 273
             + L +N +
Sbjct: 282 ERIHLHHNPW 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (261), Expect = 3e-24
 Identities = 57/304 (18%), Positives = 99/304 (32%), Gaps = 55/304 (18%)

Query: 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS 202
           +  +   LS  +P+       + R L+L +N       +TF   ++L  L    N +   
Sbjct: 59  VVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK 262
              +    A+L  L+L +N +          L +L+ L LR+N     +  Y A      
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSY-AFNRVPS 172

Query: 263 LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322
           L  LDL        +    F+ +  +                                  
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNL---------------------------------- 198

Query: 323 LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLD 382
                     ++L   +   ++P L   L  L  L +S N      P S   L+ L+ L 
Sbjct: 199 --------KYLNLGMCNIK-DMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 383 LSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLS 442
           + ++ +  +       L  L  LNL+ N L   +P       F+   Y   L L   P +
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHD----LFTPLRYLVELHLHHNPWN 303

Query: 443 KNCS 446
            +C 
Sbjct: 304 CDCD 307

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 8e-18
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPR-LICNTSTIEILDLSNN 148
            +LE L L  N ++          +++    + +N  +  IP       S +  L L NN
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN 157

Query: 149 SLSGTIPECIGNFS--KSLRVLDL-RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
            +  +IP     F+   SL  LDL    +        F    NL  LN     +   +P 
Sbjct: 158 PIE-SIPS--YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP- 212

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD--YYFSKL 263
           +L     L+ L++  N   +  P     L  L+ L + +++    +   E +     + L
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ----VSLIERNAFDGLASL 268

Query: 264 RILDLSNNNFTGSLPAMFFKNMKAMTDI 291
             L+L++NN + SLP   F  ++ + ++
Sbjct: 269 VELNLAHNNLS-SLPHDLFTPLRYLVEL 295

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 62/296 (20%), Positives = 92/296 (31%), Gaps = 74/296 (25%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
           N  YL+L  N +Q              I  + F   +  L       E+L L  NS+   
Sbjct: 76  NTRYLNLMENNIQM-------------IQADTFRH-LHHL-------EVLQLGRNSIR-Q 113

Query: 154 IPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
           I    G F+   SL  L+L  N         F   + L  L    N +      +     
Sbjct: 114 IEV--GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 212 NLQVLDLG-NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
           +L  LDLG   K++         L  L+ L L        ++D         L  L++S 
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN----IKDMPNLTPLVGLEELEMSG 227

Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330
           N+F   +    F  + ++                         L +        ++  I 
Sbjct: 228 NHFP-EIRPGSFHGLSSLK-----------------------KLWVMN-----SQVSLI- 257

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386
                 +N+F G        L SL  LNL+ N LS         L  L  L L  N
Sbjct: 258 -----ERNAFDG--------LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 45/237 (18%), Positives = 76/237 (32%), Gaps = 58/237 (24%)

Query: 187 NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
           N  + +      L   VP+ +   +N + L+L  N ++         L  L+VL L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN- 109

Query: 247 FYGHLRDYEAD--YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG 304
               +R  E       + L  L+L +N  T  +P+  F+ +  +                
Sbjct: 110 ---SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLR--------------- 150

Query: 305 ETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNI 363
                                       + L  N     IP     ++ SL  L+L +  
Sbjct: 151 ---------------------------ELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182

Query: 364 LSGNIPS-SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
               I   +   L +L+ L+L    +  +    LT L  L  L +S N     I  G
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPG 236

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 19/190 (10%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSN 147
            +L  L+L  N L   +P+ +    S +R   + NN  I  IP        ++  LDL  
Sbjct: 123 ASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGE 180

Query: 148 NSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
                 I E  G F    +L+ L+L        +P        L  L  +GN      P 
Sbjct: 181 LKKLEYISE--GAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPG 236

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY--FSKL 263
           S    ++L+ L + N+++     +    L  L  L L  N     L     D +     L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN----LSSLPHDLFTPLRYL 292

Query: 264 RILDLSNNNF 273
             L L +N +
Sbjct: 293 VELHLHHNPW 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 5e-24
 Identities = 57/282 (20%), Positives = 102/282 (36%), Gaps = 32/282 (11%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           C+ +    +  ++  L+ ++P        S   L+L  N+        F K   LT L+ 
Sbjct: 7   CSGTE---IRCNSKGLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 195 NGNEL--VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252
           + N L   G   +S     +L+ LDL  N +  T       L +L+ L  + +     + 
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMS 117

Query: 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSV 312
           ++        L  LD+S+ +         F  + ++  +      N              
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK--MAGNS------------- 161

Query: 313 TLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPSS 371
               +     +   L   T +DLS+     ++       L SL++LN+S N         
Sbjct: 162 --FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 372 LGDLTDLESLDLSSNVLDGVIPRELTRL-TFLAVLNLSRNKL 412
              L  L+ LD S N +     +EL    + LA LNL++N  
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 59/298 (19%), Positives = 96/298 (32%), Gaps = 73/298 (24%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
           +   L+L SN LQ              + +  F   + +L         L LS+N LS  
Sbjct: 29  SATRLELESNKLQ-------------SLPHGVFDK-LTQL-------TKLSLSSNGLS-F 66

Query: 154 IPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-NC 210
              C  +     SL+ LDL  N    T+   F     L  L+F  + L      S+  + 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
            NL  LD+ +   +  F      L  L+VL +  N F  +    +       L  LDLS 
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQ 184

Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330
                 L    F ++ ++                                          
Sbjct: 185 CQLE-QLSPTAFNSLSSL------------------------------------------ 201

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSL--GDLTDLESLDLSSN 386
             +++S N+F          L+SL++L+ S N +             + L  L+L+ N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 45/235 (19%), Positives = 82/235 (34%), Gaps = 52/235 (22%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
           + T +  N   L  SVP  +   ++   L+L +NK++         L +L  L L SN  
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
                  ++D+  + L+ LDLS N    ++ + F                          
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG------------------------ 99

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPE--LMGKLHSLRLLNLSQNILS 365
                              L     +D   ++   ++ E  +   L +L  L++S     
Sbjct: 100 -------------------LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 366 GNIPSSLGDLTDLESLDLSSN-VLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
                    L+ LE L ++ N   +  +P   T L  L  L+LS+ +LE ++   
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT 193

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 26/158 (16%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           +NL YLD+     +             +  N  F G +  L       E+L ++ NS   
Sbjct: 126 RNLIYLDISHTHTR-------------VAFNGIFNG-LSSL-------EVLKMAGNSFQE 164

Query: 153 TIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
                   F++  +L  LDL + +     P  F   ++L  LN + N             
Sbjct: 165 NFLP--DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTL-RELQVLILRSNKF 247
            +LQVLD   N +  +    L      L  L L  N F
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS--GNIPSSLGDLTDLESLDLSSNVL 388
           T ++L  N        +  KL  L  L+LS N LS  G    S    T L+ LDLS N +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 389 DGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFA 423
              +      L  L  L+   + L+ ++ E + F 
Sbjct: 91  -ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 123

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 93  KNLEYLDLRSNLLQGPVPA----PSSNMRVFLISNNKFIGEIPR-LICNTSTIEILDLSN 147
           +NL +LDL    L+  +        S+++V  +S+N     +        +++++LD S 
Sbjct: 175 RNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL 232

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFH 176
           N +  +  + + +F  SL  L+L +N F 
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           S   +  +   L+ ++P+ +   +    L+L SN L  +      +LT L  L+LS N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 413 EGRIPEGNQF 422
             +       
Sbjct: 65  SFKGCCSQSD 74

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 65/338 (19%), Positives = 109/338 (32%), Gaps = 68/338 (20%)

Query: 94  NLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPR-LICNTSTIEILDLSNNSLS 151
           +L  +      L+  VP     +  +  + NNK I EI      N   +  L L NN +S
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-NC 210
             I          L  L L KN+    +PE  PK   L  L  + NE+   V +S+    
Sbjct: 90  -KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEIT-KVRKSVFNGL 144

Query: 211 ANLQVLDLGNNKMKDTF--PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDL 268
             + V++LG N +K +         +++L  + +                    L  L L
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHL 199

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
             N  T  + A   K +  +                                        
Sbjct: 200 DGNKIT-KVDAASLKGLNNLA--------------------------------------- 219

Query: 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL 388
               + LS NS        +     LR L+L+ N L   +P  L D   ++ + L +N +
Sbjct: 220 ---KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

Query: 389 DGV------IPRELTRLTFLAVLNLSRNKLE-GRIPEG 419
             +       P   T+    + ++L  N ++   I   
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 60/315 (19%), Positives = 108/315 (34%), Gaps = 64/315 (20%)

Query: 123 NNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIP 180
           ++  + ++P+ +       +LDL NN ++  I +  G+F   K+L  L L  N+     P
Sbjct: 39  SDLGLEKVPKDL--PPDTALLDLQNNKIT-EIKD--GDFKNLKNLHTLILINNKISKISP 93

Query: 181 ETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL 240
             F     L  L  + N+L   +P  +     LQ L +  N++          L ++ V+
Sbjct: 94  GAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 241 ILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS 300
            L +N       +  A     KL  + +++ N T ++P     ++               
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL--------------- 194

Query: 301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNL 359
                                         T + L  N    ++       L++L  L L
Sbjct: 195 ------------------------------TELHLDGNKIT-KVDAASLKGLNNLAKLGL 223

Query: 360 SQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           S N +S     SL +   L  L L++N L   +P  L    ++ V+ L  N +   I   
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN 281

Query: 420 NQFATFSSDSYGGNL 434
                F    Y    
Sbjct: 282 ----DFCPPGYNTKK 292

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.7 bits (218), Expect = 3e-19
 Identities = 57/332 (17%), Positives = 95/332 (28%), Gaps = 90/332 (27%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           KNL  L L +N +               IS   F             +E L LS N L  
Sbjct: 76  KNLHTLILINNKISK-------------ISPGAFAP--------LVKLERLYLSKNQLK- 113

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSV--PRSLLNC 210
            +PE      K+L+ L + +N         F   N +  +    N L  S     +    
Sbjct: 114 ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY--YFSKLRILDL 268
             L  + + +  +  T P   G    L  L L  NK    +   +A      + L  L L
Sbjct: 171 KKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNK----ITKVDAASLKGLNNLAKLGL 223

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
           S N+ + ++      N   +                                        
Sbjct: 224 SFNSIS-AVDNGSLANTPHL---------------------------------------- 242

Query: 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSS-------LGDLTDLESL 381
               + L+ N    ++P  +     ++++ L  N +S  I S+                +
Sbjct: 243 --RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGV 298

Query: 382 DLSSNVLDGV-IPREL-TRLTFLAVLNLSRNK 411
            L SN +    I       +   A + L   K
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 4e-23
 Identities = 81/367 (22%), Positives = 132/367 (35%), Gaps = 49/367 (13%)

Query: 94  NLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLIC-NTSTIEILDLSNN 148
           ++ Y+DL  N +   +   S     +++   +        I        S++ IL L  N
Sbjct: 31  HVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 149 SLSGTIPECIGNFSK--SLRVLDLRKNRFHGTI--PETFPKGNNLTTLNFNGNELVGSVP 204
                +    G F+   +L VL L +    G +     F    +L  L    N +    P
Sbjct: 90  QFL-QLET--GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 205 RSLL-NCANLQVLDLGNNKMK----DTFPHWLGTLRELQVLILRSNK------FYGHLRD 253
            S   N     VLDL  NK+K    +   ++ G      +L L S        ++     
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK--HFTLLRLSSITLQDMNEYWLGWEK 204

Query: 254 YEADYYFSKLRILDLSNNNFTGSLPAMFFK--NMKAMTDIGEAADENKSKYMGETYYEDS 311
               +  + +  LDLS N F  S+   FF       +  +  +   N     G T ++D 
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 312 VTLIIKRQEVKLMKIL------------TIF------TTIDLSKNSFHGEIPELM-GKLH 352
                K  E   +K              ++F        + L++N  + +I +     L 
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLT 323

Query: 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
            L  LNLSQN L         +L  LE LDLS N +  +  +    L  L  L L  N+L
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 413 EGRIPEG 419
           +  +P+G
Sbjct: 384 K-SVPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 4e-22
 Identities = 65/341 (19%), Positives = 122/341 (35%), Gaps = 43/341 (12%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSN 147
           ++L++L +        +   +    S++ +  +  N+   ++        + +E+L L+ 
Sbjct: 54  QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQ 112

Query: 148 NSL-SGTIPECIGNFSK--SLRVLDLRKNRFHGTIPET-FPKGNNLTTLNFNGNELVGSV 203
            +L    +      F    SL +L LR N      P + F        L+   N++  S+
Sbjct: 113 CNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SI 169

Query: 204 PRSL---LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYF 260
                      +  +L L +          L  + E  +   +    + +          
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSIT--------LQDMNEYWLGWEKCGNPFKN---------- 211

Query: 261 SKLRILDLSNNNFTGSLPAMFFK--NMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKR 318
           + +  LDLS N F  S+   FF       +  +  +   N     G T ++D      K 
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 319 QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDL 378
            E       +   T DLSK+     +  +      L  L L+QN ++    ++   LT L
Sbjct: 272 LE------ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 379 ESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
             L+LS N L  +  R    L  L VL+LS N +   + + 
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQ 365

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.5 bits (178), Expect = 8e-14
 Identities = 57/310 (18%), Positives = 100/310 (32%), Gaps = 83/310 (26%)

Query: 138 STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNG 196
           + +  +DLS NS++  + E   +  + L+ L + +      I   TF   ++L  L  + 
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 197 NELVGSVPRSLL-NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255
           N+ +  +        ANL+VL L                  L   +L  N F        
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCN--------------LDGAVLSGNFFKP------ 127

Query: 256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI 315
                + L +L L +NN     PA FF N                               
Sbjct: 128 ----LTSLEMLVLRDNNIKKIQPASFFLN------------------------------- 152

Query: 316 IKRQEVKLMKILTIFTTIDLSKNSF----HGEIPELMGK------LHSLRLLNLSQNILS 365
                      +  F  +DL+ N        ++    GK      L S+ L ++++  L 
Sbjct: 153 -----------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 366 GNIPSSLGDLTDLESLDLSSNVLDGVIPR---ELTRLTFLAVLNLSRNKLEGRIPEGNQF 422
                +    T + +LDLS N     + +   +    T +  L LS +   G       F
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 423 ATFSSDSYGG 432
               + ++ G
Sbjct: 262 KDPDNFTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 16/202 (7%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            ++  LDL  N  +  +             +     +I  LI + S        + +   
Sbjct: 212 TSITTLDLSGNGFKESMA--------KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK- 262

Query: 153 TIPEC--IGNFSKSLRVLDLRKNRFHGTIPETFPKG-NNLTTLNFNGNELVGSVPRSLLN 209
                   G  +  ++  DL K++    + ++      +L  L    NE+      +   
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
             +L  L+L  N +          L +L+VL L  N     L D ++      L+ L L 
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGD-QSFLGLPNLKELALD 379

Query: 270 NNNFTGSLPAMFFKNMKAMTDI 291
            N    S+P   F  + ++  I
Sbjct: 380 TNQLK-SVPDGIFDRLTSLQKI 400

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 38/216 (17%)

Query: 88  KKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
                K+   L L S  LQ              ++      E        ++I  LDLS 
Sbjct: 175 LNFQGKHFTLLRLSSITLQD-------------MNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 148 NSLSGTIPECIGNFSKSLRVLDLR------------KNRFHGTIPETFP--KGNNLTTLN 193
           N    ++ +   +     ++  L                F      TF   + + + T +
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 194 FNGNELVGSVPRSLL-NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252
            + +++  ++ +S+  +  +L+ L L  N++     +    L  L  L L  N   G + 
Sbjct: 282 LSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339

Query: 253 DYEADYYF---SKLRILDLSNNNFTGSLPAMFFKNM 285
                  F    KL +LDLS N+   +L    F  +
Sbjct: 340 SRM----FENLDKLEVLDLSYNHIR-ALGDQSFLGL 370

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 89  KLPWKNLEYLDLRSNLLQ---GPVPAPSSNMRVFLISNNKFIGEIPRLIC-NTSTIEILD 144
            L    ++  DL  + +      V +  +++    ++ N+ I +I        + +  L+
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLN 329

Query: 145 LSNNSLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS 202
           LS N L  +I      F     L VLDL  N       ++F    NL  L  + N+L  S
Sbjct: 330 LSQNFLG-SIDS--RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-S 385

Query: 203 VPRSLL-NCANLQVLDLGNN 221
           VP  +     +LQ + L  N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.1 bits (244), Expect = 7e-22
 Identities = 57/347 (16%), Positives = 110/347 (31%), Gaps = 95/347 (27%)

Query: 92  WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
           W   E   L                     + N+ +  +    C  +    L L+  +LS
Sbjct: 33  WDKWEKQALPGE------------------NRNEAVSLLKE--CLINQFSELQLNRLNLS 72

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
            ++P+ +      + VL++ +N    ++PE      +L  L+   N L  ++P      A
Sbjct: 73  -SLPDNLP---PQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELP---A 120

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
           +L+ LD+ NN++    P     L     +   +N+    L +       + L +L + NN
Sbjct: 121 SLKHLDVDNNQLT-MLPELPALLEY---INADNNQL-TMLPE-----LPTSLEVLSVRNN 170

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
             T  LP                                            L + L    
Sbjct: 171 QLT-FLPE-------------------------------------------LPESL---E 183

Query: 332 TIDLSKNSFHGEIPELMGKLHSLR----LLNLSQNILSGNIPSSLGDLTDLESLDLSSNV 387
            +D+S N     +P +  + H            +N ++ +IP ++  L    ++ L  N 
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 388 LDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNL 434
           L   I   L++ T     +  R        + N      +D+     
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.8 bits (238), Expect = 4e-21
 Identities = 57/320 (17%), Positives = 99/320 (30%), Gaps = 77/320 (24%)

Query: 129 EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNN 188
           +            +   + N     + EC+         L L +     ++P+  P    
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECL---INQFSELQLNRLNLS-SLPDNLPP--Q 81

Query: 189 LTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY 248
           +T L    N L+ S+P      A+L+ LD  +N++  T P    +L+ L    + +N+  
Sbjct: 82  ITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TLPELPASLKHLD---VDNNQL- 132

Query: 249 GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYY 308
             L +       + L  ++  NN  T  LP +                            
Sbjct: 133 TMLPEL-----PALLEYINADNNQLT-MLPEL---------------------------- 158

Query: 309 EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNI 368
                              T    + +  N     +PEL     SL  L++S N+L  ++
Sbjct: 159 ------------------PTSLEVLSVRNNQL-TFLPELPE---SLEALDVSTNLLE-SL 195

Query: 369 PSSLGDLTDLES----LDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFAT 424
           P+        E          N +   IP  +  L     + L  N L  RI E     T
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 425 FSSDSYGGNLGLCGFPLSKN 444
              D +G  +        +N
Sbjct: 255 AQPDYHGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 2e-19
 Identities = 58/325 (17%), Positives = 113/325 (34%), Gaps = 34/325 (10%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
           +LEYLD   N L   +P   ++++   + NN+    +P L      +E ++  NN L+  
Sbjct: 101 SLEYLDACDNRLST-LPELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-M 154

Query: 154 IPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL 213
           +PE   +    L VL +R N+    +PE      +L  L+ + N L  S+P   +   + 
Sbjct: 155 LPELPTS----LEVLSVRNNQL-TFLPELPE---SLEALDVSTNLLE-SLPAVPVRNHHS 205

Query: 214 Q----VLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
           +          N++    P  + +L     +IL  N     +R+  +    +        
Sbjct: 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ--TAQPDYHGP 262

Query: 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329
              F+ S       +      +     ENK   + + ++           E         
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA-------FEHEEHANTFSAF 315

Query: 330 FTTIDLSKN-----SFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLS 384
              +  + +      F  ++   + KL +   L      ++ +   S  D   L   +L 
Sbjct: 316 LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLR 375

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSR 409
             +L       L      A+L+L R
Sbjct: 376 KTLLVHQASEGLFDNDTGALLSLGR 400

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 4e-16
 Identities = 47/308 (15%), Positives = 103/308 (33%), Gaps = 29/308 (9%)

Query: 84  LLGNK--KLP--WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTST 139
              N+   LP    +L++LD+ +N L   +P   + +      NN+ +  +P L  +   
Sbjct: 107 ACDNRLSTLPELPASLKHLDVDNNQLTM-LPELPALLEYINADNNQ-LTMLPELPTS--- 161

Query: 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTT----LNFN 195
           +E+L + NN L+  +PE   +    L  LD+  N    ++P    + ++           
Sbjct: 162 LEVLSVRNNQLT-FLPELPES----LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 196 GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255
            N +   +P ++L+      + L +N +  +      + +  Q        ++      +
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI 315
              +     + D     F  +  +   +   A      A   +              T  
Sbjct: 274 NTLH---RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG 330

Query: 316 IKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNIL-----SGNIPS 370
            + Q    ++ L+    +     +   +  E      +L   NL + +L      G   +
Sbjct: 331 FREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDN 390

Query: 371 SLGDLTDL 378
             G L  L
Sbjct: 391 DTGALLSL 398

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 4e-14
 Identities = 55/293 (18%), Positives = 96/293 (32%), Gaps = 78/293 (26%)

Query: 133 LICNTSTIEILDLSNNSLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLT 190
           L  N +     +   N++SGT  +    + K     +    +N     + E        +
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFS 62

Query: 191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250
            L  N   L  S+P +L     + VL++  N         L +L EL             
Sbjct: 63  ELQLNRLNLS-SLPDNL--PPQITVLEITQNA--------LISLPEL------------- 98

Query: 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYED 310
                     + L  LD  +N  + +LP     ++K +       D N+           
Sbjct: 99  ---------PASLEYLDACDNRLS-TLPE-LPASLKHLD-----VDNNQLTM-------- 134

Query: 311 SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPS 370
                       L ++  +   I+   N     +PEL     SL +L++  N L+  +P 
Sbjct: 135 ------------LPELPALLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLTF-LPE 177

Query: 371 SLGDLTDLESLDLSSNVLDGVIPRELTRLTFL----AVLNLSRNKLEGRIPEG 419
               L     LD+S+N+L+  +P    R               N++   IPE 
Sbjct: 178 LPESLEA---LDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 1e-21
 Identities = 60/308 (19%), Positives = 114/308 (37%), Gaps = 45/308 (14%)

Query: 123 NNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIP 180
           ++  +  +P+ I  +    +LDL NN +S  + +   +F   + L  L L  N+      
Sbjct: 41  SDLGLKAVPKEI--SPDTTLLDLQNNDIS-ELRK--DDFKGLQHLYALVLVNNKISKIHE 95

Query: 181 ETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL 240
           + F     L  L  + N LV  +P +L   ++L  L + +N+++         LR +  +
Sbjct: 96  KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 241 ILRSNKFYGHLRDYEADYYFS--KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN 298
            +  N       +  A   F   KL  L +S    T  +P    + +  +       D N
Sbjct: 153 EMGGNPLENSGFEPGA---FDGLKLNYLRISEAKLT-GIPKDLPETLNELH-----LDHN 203

Query: 299 KSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLN 358
           K                I+  E++ +   +    + L  N         +  L +LR L+
Sbjct: 204 K----------------IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 359 LSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIP------RELTRLTFLAVLNLSRNKL 412
           L  N LS  +P+ L DL  L+ + L +N +  V            +  +   ++L  N +
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 413 E-GRIPEG 419
               +   
Sbjct: 307 PYWEVQPA 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 50/290 (17%), Positives = 84/290 (28%), Gaps = 54/290 (18%)

Query: 141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELV 200
            ++  S+  L   +P+     S    +LDL+ N       + F    +L  L    N++ 
Sbjct: 36  RVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 201 GSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK--------FYGHLR 252
               ++      LQ L +  N +    P        L  L +  N+        F G   
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIP--PNLPSSLVELRIHDNRIRKVPKGVFSGL-- 146

Query: 253 DYEADYYFSKLRILDLSNNNFT-GSLPAMFFKNMKAMT-DIGEAADENKSKYMGETYYED 310
                     +  +++  N           F  +K     I     E K   + +     
Sbjct: 147 --------RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS----EAKLTGIPK----- 189

Query: 311 SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNILSGNIP 369
                          +      + L  N     I      +   L  L L  N +     
Sbjct: 190 --------------DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 370 SSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
            SL  L  L  L L +N L   +P  L  L  L V+ L  N +  ++   
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.5 bits (207), Expect = 9e-18
 Identities = 42/209 (20%), Positives = 68/209 (32%), Gaps = 16/209 (7%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKF-IGEIPRLICNTSTIEILDLSN 147
            +L  L +  N ++  VP        NM    +  N            +   +  L +S 
Sbjct: 123 SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
             L+  IP+       +L  L L  N+      E   + + L  L    N++      SL
Sbjct: 182 AKLT-GIPK--DLPE-TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF----YGHLRDYEADYYFSKL 263
                L+ L L NNK+    P  L  L+ LQV+ L +N                   +  
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 264 RILDLSNNNFT-GSLPAMFFKNMKAMTDI 291
             + L NN      +    F+ +     I
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 9e-17
 Identities = 53/331 (16%), Positives = 90/331 (27%), Gaps = 89/331 (26%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           ++L  L L +N +               I    F   + +L       + L +S N L  
Sbjct: 78  QHLYALVLVNNKISK-------------IHEKAFSP-LRKL-------QKLYISKNHLV- 115

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL-VGSVPRSLLNCA 211
            IP    N   SL  L +  NR        F    N+  +   GN L          +  
Sbjct: 116 EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY--YFSKLRILDLS 269
            L  L +   K+    P        L  L L  NK    ++  E +    +SKL  L L 
Sbjct: 173 KLNYLRISEAKLT-GIPK--DLPETLNELHLDHNK----IQAIELEDLLRYSKLYRLGLG 225

Query: 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329
           +N     +       +  +                                         
Sbjct: 226 HNQIR-MIENGSLSFLPTL----------------------------------------- 243

Query: 330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSS-------LGDLTDLESLD 382
              + L  N     +P  +  L  L+++ L  N ++  +  +                + 
Sbjct: 244 -RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGIS 300

Query: 383 LSSNVLD--GVIPRELTRLTFLAVLNLSRNK 411
           L +N +    V P     +T    +     K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 36/235 (15%), Positives = 70/235 (29%), Gaps = 60/235 (25%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
           +L  +  +   L  +VP+ +    +  +LDL NN + +        L+ L  L+L +NK 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK- 89

Query: 248 YGHLRDYEAD--YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE 305
              +            KL+ L +S N+    +P     ++                    
Sbjct: 90  ---ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSL-------------------- 125

Query: 306 TYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQN-IL 364
                                      + +  N        +   L ++  + +  N + 
Sbjct: 126 -------------------------VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 365 SGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           +        D   L  L +S   L G+       L     L+L  NK++  I   
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQ-AIELE 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 5e-20
 Identities = 55/286 (19%), Positives = 107/286 (37%), Gaps = 33/286 (11%)

Query: 142 ILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG 201
           I   S+ SL+ +IP      +++++ LDL  NR          +  NL  L    N +  
Sbjct: 35  ICKGSSGSLN-SIPS---GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS 261
               S  +  +L+ LDL  N + +    W   L  L  L L  N +   L +     + +
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLT 149

Query: 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEV 321
           KL+IL + N +    +    F  +  + ++    D +                 ++  E 
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEI--DASD----------------LQSYEP 191

Query: 322 KLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN----IPS----SLG 373
           K +K +   + + L        +   +    S+  L L    L       + +    SL 
Sbjct: 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 374 DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
                 ++ ++   L   + + L +++ L  L  SRN+L+  +P+G
Sbjct: 252 KKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 54/303 (17%), Positives = 111/303 (36%), Gaps = 41/303 (13%)

Query: 123 NNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIP 180
           ++  +  IP  +  T  ++ LDLSNN ++  I     +  +  +L+ L L  N  + TI 
Sbjct: 39  SSGSLNSIPSGL--TEAVKSLDLSNNRIT-YISN--SDLQRCVNLQALVLTSNGIN-TIE 92

Query: 181 E-TFPKGNNLTTLNFNGNELVGSVPRSLL-NCANLQVLDLGNNKMKDTFPH-WLGTLREL 237
           E +F    +L  L+ + N L  ++  S     ++L  L+L  N  K          L +L
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 238 QVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE 297
           Q+L + +   +  ++  +     + L  L++  ++   S      K+++ ++ +      
Sbjct: 152 QILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHL--ILHM 207

Query: 298 NKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG----EIPELM----G 349
            +                        + + +    ++L           E+         
Sbjct: 208 KQ----------------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 350 KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR 409
           K  + R + ++   L   +   L  ++ L  L+ S N L  V      RLT L  + L  
Sbjct: 252 KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 410 NKL 412
           N  
Sbjct: 311 NPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 63/303 (20%), Positives = 109/303 (35%), Gaps = 48/303 (15%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
            ++ LDL +N +               ISN+        L       + L L++N ++ T
Sbjct: 53  AVKSLDLSNNRITY-------------ISNSDLQR-CVNL-------QALVLTSNGIN-T 90

Query: 154 IPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-NC 210
           I E   +FS   SL  LDL  N         F   ++LT LN  GN        SL  + 
Sbjct: 91  IEE--DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 211 ANLQVLDLGNNKMKDTFPH-WLGTLRELQVLILRSNKFYGHLRDYEAD--YYFSKLRILD 267
             LQ+L +GN              L  L+ L + ++     L+ YE         +  L 
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD----LQSYEPKSLKSIQNVSHLI 204

Query: 268 LSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL 327
           L        L  +F     ++  +           + +T  +      +   E   +   
Sbjct: 205 LHMKQHI-LLLEIFVDVTSSVECL----------ELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSS-LGDLTDLESLDLSSN 386
             F  + ++  S   ++ +L+ ++  L  L  S+N L  ++P      LT L+ + L +N
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

Query: 387 VLD 389
             D
Sbjct: 312 PWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 32/249 (12%)

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD--YY 259
           S+P  L     ++ LDL NN++       L     LQ L+L SN     +   E D    
Sbjct: 45  SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG----INTIEEDSFSS 98

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
              L  LDLS N  + +L + +FK + ++T +      N  K +GET             
Sbjct: 99  LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN--LLGNPYKTLGETS------------ 143

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDL 378
              L   LT    + +       +I       L  L  L +  + L    P SL  + ++
Sbjct: 144 ---LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 379 ESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCG 438
             L L       ++   +   + +  L L    L     +   F+  S+      +    
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDL-----DTFHFSELSTGETNSLIKKFT 255

Query: 439 FPLSKNCSN 447
           F   K    
Sbjct: 256 FRNVKITDE 264

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 25/197 (12%), Positives = 66/197 (33%), Gaps = 21/197 (10%)

Query: 93  KNLEYLDLRSN----LLQGPVPAPSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSN 147
            +L +L+L  N    L +  + +  + +++  + N     +I  +     + +E L++  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGN--------EL 199
           + L  +         +++  L L   +    +       +++  L             EL
Sbjct: 184 SDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 200 VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY 259
                 SL+     + + + +  +       L  +  L  L    N+    L+      +
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ----LKSVPDGIF 297

Query: 260 --FSKLRILDLSNNNFT 274
              + L+ + L  N + 
Sbjct: 298 DRLTSLQKIWLHTNPWD 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 60/284 (21%), Positives = 88/284 (30%), Gaps = 64/284 (22%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           C              L   +P        + + + L  NR       +F    NLT L  
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 195 NGNELVGSVPRSLLNCANLQVLDLGNNKM-----KDTFPHWLGTLRELQVLILRSNKFYG 249
           + N L      +    A L+ LDL +N         TF      L  L  L L       
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG----LGRLHTLHLDRC---- 115

Query: 250 HLRDYEAD--YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
            L++         + L+ L L +N    +LP   F+++  +T                  
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT------------------ 156

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNILSG 366
                                    + L  N     +PE     LHSL  L L QN ++ 
Sbjct: 157 ------------------------HLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 367 NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN 410
             P +  DL  L +L L +N L  +    L  L  L  L L+ N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 9e-17
 Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 16/206 (7%)

Query: 94  NLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLI-CNTSTIEILDLSNNS 149
             + + L  N +            N+ +  + +N  +  I        + +E LDLS+N+
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNGNELVGSVPRSLL 208
              ++     +    L  L L +      +    F     L  L    N L      +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS---KLRI 265
           +  NL  L L  N++          L  L  L+L  N+    +        F    +L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR----VAHVHPH-AFRDLGRLMT 205

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDI 291
           L L  NN + +LP      ++A+  +
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYL 230

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 46/189 (24%), Positives = 71/189 (37%), Gaps = 17/189 (8%)

Query: 94  NLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSNNS 149
           NL  L L SN+L           + +    +S+N  +  +          +  L L    
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 150 LSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNGNELVGSVPRS 206
           L   +    G F    +L+ L L+ N     +P+ TF    NLT L  +GN +     R+
Sbjct: 117 LQ-ELGP--GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 207 LLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR--DYEADYYFSKLR 264
                +L  L L  N++    PH    L  L  L L +N     L     EA      L+
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN----LSALPTEALAPLRALQ 228

Query: 265 ILDLSNNNF 273
            L L++N +
Sbjct: 229 YLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 37/160 (23%), Positives = 56/160 (35%), Gaps = 11/160 (6%)

Query: 93  KNLEYLDLRSNLLQGPVPA----PSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSN 147
             LE LDL  N     V          +    +     + E+   L    + ++ L L +
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD 138

Query: 148 NSLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR 205
           N+L   +P+    F    +L  L L  NR        F   ++L  L  + N +    P 
Sbjct: 139 NALQ-ALPD--DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245
           +  +   L  L L  N +       L  LR LQ L L  N
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 38/236 (16%), Positives = 61/236 (25%), Gaps = 76/236 (32%)

Query: 186 GNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245
                T +     L  +VP  +   A  Q + L  N++                  + + 
Sbjct: 10  NEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH----------------VPAA 50

Query: 246 KFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE 305
            F               L IL L +N     + A  F  +  +                 
Sbjct: 51  SFRA----------CRNLTILWLHSNVLA-RIDAAAFTGLALLE---------------- 83

Query: 306 TYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP-ELMGKLHSLRLLNLSQNIL 364
                                      +DLS N+    +       L  L  L+L +  L
Sbjct: 84  --------------------------QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 365 SGNIPS-SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
              +       L  L+ L L  N L  +       L  L  L L  N++   +PE 
Sbjct: 118 Q-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER 171

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.8 bits (220), Expect = 1e-19
 Identities = 59/333 (17%), Positives = 90/333 (27%), Gaps = 76/333 (22%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSS----NMRVFLISNNKFIGEIPRL---ICNTSTIEILDL 145
           ++LEYL  R +               +++   +   +    I      +   S ++ L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 146 SNNSLSGTIPECIGNFS-KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP 204
            N  ++GT P  +   +   L +L+LR   +             L               
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP------------- 149

Query: 205 RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG--HLRDYEADYYFSK 262
                   L+VL +      +     +     L  L L  N   G   L        F  
Sbjct: 150 -------GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 263 LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322
           L++L L N     +   +      A   +                               
Sbjct: 203 LQVLALRNAGME-TPSGVCSALAAARVQL------------------------------- 230

Query: 323 LMKILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNILSGNIPSSLGDLTDLESL 381
                     +DLS NS               L  LNLS   L   +P  L     L  L
Sbjct: 231 --------QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVL 279

Query: 382 DLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
           DLS N LD   P     L  +  L+L  N    
Sbjct: 280 DLSYNRLDR-NPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 7e-17
 Identities = 40/205 (19%), Positives = 63/205 (30%), Gaps = 23/205 (11%)

Query: 88  KKLPWKNLEYLDLRSNLLQGPVPAP-----SSNMRVFLISNNKFIGEIPRL----ICNTS 138
           + L    L+ L L +  + G  P P       ++ +  + N  +      L         
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRF-------HGTIPETFPKGNNLTT 191
            +++L ++         E +  F  +L  LDL  N             P  FP    L  
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 192 LNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGT-LRELQVLILRSNKFYGH 250
            N       G           LQ LDL +N ++D           +L  L L        
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 251 LRDYEADYYFSKLRILDLSNNNFTG 275
            +        +KL +LDLS N    
Sbjct: 269 PKGL-----PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 5e-15
 Identities = 61/293 (20%), Positives = 94/293 (32%), Gaps = 53/293 (18%)

Query: 133 LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPK---GNNL 189
           L     ++E L    ++ +          S SL+ L +R  R    I     +    + L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 190 TTLNFNGNELVGSVPRSLLNCA--NLQVLDLGNNKMKDTFPHWLGTLRE-----LQVLIL 242
             L     E+ G+ P  LL     +L +L+L N     T   WL  L++     L+VL +
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSI 156

Query: 243 RSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKY 302
                       E    F  L  LDLS+N   G    +                      
Sbjct: 157 AQAHS--LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT------------ 202

Query: 303 MGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQN 362
                                   L +    +    +  G    L      L+ L+LS N
Sbjct: 203 ------------------------LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 363 ILSGNIPSSLGD-LTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG 414
            L     +   D  + L SL+LS   L  V      +L+   VL+LS N+L+ 
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.9 bits (176), Expect = 5e-14
 Identities = 55/295 (18%), Positives = 89/295 (30%), Gaps = 59/295 (20%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPET-FPKGNNLTTLN 193
           CN S  +    S  +  G     +    +SL  L  R +        T   K  +L  L 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74

Query: 194 FNGNELVGSVPRS---LLNCANLQVLDLGNNKMKDTFPHWLG--TLRELQVLILRSNKFY 248
                +   +      +L  + LQ L L N ++  T P  L   T  +L +L LR+  + 
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 249 GHLRDYEA--DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET 306
                      +    L++L ++  +   +      +                       
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV---------------------- 171

Query: 307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPEL----MGKLHSLRLLNLSQN 362
                                   +T+DLS N   GE   +      K  +L++L L   
Sbjct: 172 --------------------FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 363 ---ILSGNIPSSLGDLTDLESLDLSSNVLDGVIPREL-TRLTFLAVLNLSRNKLE 413
                SG   +       L+ LDLS N L            + L  LNLS   L+
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 39/277 (14%), Positives = 72/277 (25%), Gaps = 50/277 (18%)

Query: 156 ECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP-RSLLNCANLQ 214
            C  NFS          N       E +  G +L  L    +          ++   +L+
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLK 71

Query: 215 VLDLGNNKMKDTFPHW---LGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
            L +   ++          +  +  LQ L L + +  G       +     L IL+L N 
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
           ++       +   ++                                       +     
Sbjct: 132 SWATRDA--WLAELQQW-------------------------------------LKPGLK 152

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSS----LGDLTDLESLDLSSN- 386
            + +++        E +    +L  L+LS N   G               L+ L L +  
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 387 --VLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQ 421
                GV          L  L+LS N L       + 
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLS-QNILSGNIPSSLGDL-----TDLESLDLS 384
             + L      G  P  + +     L  L+ +N+      + L +L       L+ L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQF 422
                     ++     L+ L+LS N   G     +  
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 85.7 bits (212), Expect = 5e-18
 Identities = 61/322 (18%), Positives = 109/322 (33%), Gaps = 37/322 (11%)

Query: 84  LLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSN---------MRVFLISNNKFIGEIPRLI 134
           +L        NLE  +++  L         S          +    ++N +        I
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 135 ---CNTSTIEILDLSNNSLSGTIPECIGNFS----KSLRVLDLRKNRFHGTIPETFPKGN 187
                 +T+    +SN  L G +     ++S    K+L +  +  + F       +   +
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
           N+   NF  +             +    LD  NN + DT     G L EL+ LIL+ N+ 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
               +  E       L+ LD+S N+ +           K++  +           M    
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL----------NMSSNI 410

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
             D++             +      +DL  N     IP+ + KL +L+ LN++ N L   
Sbjct: 411 LTDTIF----------RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459

Query: 368 IPSSLGDLTDLESLDLSSNVLD 389
                  LT L+ + L +N  D
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.0 bits (205), Expect = 5e-17
 Identities = 53/332 (15%), Positives = 103/332 (31%), Gaps = 28/332 (8%)

Query: 94  NLEYLDLRSNLLQG---PVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
            L  L +  N +Q     V   +  +    +S+NK + +I      T  ++ LDLS N+ 
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS--CHPTVNLKHLDLSFNAF 102

Query: 151 SGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLT-TLNFNGNELVGSVPRSL 207
              +P C   F     L+ L L       +        N     L           P  L
Sbjct: 103 D-ALPIC-KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 208 LNCA--NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY----YFS 261
            +    +L ++   N +        + T+  L++  ++          + +         
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEV 321
           KL  L L+N   T +      + +   T    +    K +   +    D           
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS------ 274

Query: 322 KLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESL 381
                L   +   +  + F      +     ++ + N + +            ++    L
Sbjct: 275 -----LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 382 DLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
           D S+N+L   +      LT L  L L  N+L+
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.6 bits (204), Expect = 5e-17
 Identities = 59/332 (17%), Positives = 123/332 (37%), Gaps = 10/332 (3%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPR--LICNTSTIEILDLSNNSL 150
           + LEYLDL  N L      P+ N++   +S N F   +P      N S ++ L LS   L
Sbjct: 69  QELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHL 127

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
             +    I + + S  +L L +       PE      +  T + +           +L+ 
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ---DFNTESLHIVFPTNKEFHFILDV 184

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
           +   V +L  + +K        +     +  L++N    +L     +   +    + +  
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL--TLNNIETTWNSFIRILQ 242

Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330
             +  ++      N+K    +     +     +        V+ +    +  + +I +  
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
              + + +           K+     L+ S N+L+  +  + G LT+LE+L L  N L  
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 391 V--IPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
           +  I    T++  L  L++S+N +     +G+
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 53/371 (14%), Positives = 119/371 (32%), Gaps = 67/371 (18%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRV----FLISNNKFIGEIPRLICNTSTIEI-LDLSN 147
             L++L L +  L+     P +++ +     ++       E P  + + +T  + +    
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE-------------------------- 181
           N     I +       +L + +++                                    
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 182 -------TFPKGNNLTTLNFNGNELVGSVPRSLLNCAN-----LQVLDLGNNKMKDTFPH 229
                         +   + +  +L G +     + +      L +  + ++       +
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 230 WLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMT 289
                  + +     +     +         S    LD SNN  T         ++  + 
Sbjct: 295 IYEIFSNMNIKNFTVSGTR--MVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELE 351

Query: 290 DIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSF-HGEIPELM 348
            +      N+ K + +                ++   +     +D+S+NS  + E     
Sbjct: 352 TLI--LQMNQLKELSKI--------------AEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 349 GKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408
               SL  LN+S NIL+  I   L     ++ LDL SN +   IP+++ +L  L  LN++
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452

Query: 409 RNKLEGRIPEG 419
            N+L+  +P+G
Sbjct: 453 SNQLK-SVPDG 462

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 48/313 (15%), Positives = 95/313 (30%), Gaps = 31/313 (9%)

Query: 124 NKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETF 183
              +  +P+ +  +    IL++S N +S      I + SK LR+L +  NR        F
Sbjct: 9   KNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSK-LRILIISHNRIQYLDISVF 65

Query: 184 PKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD-TFPHWLGTLRELQVLIL 242
                L  L+ + N+L   +        NL+ LDL  N           G + +L+ L L
Sbjct: 66  KFNQELEYLDLSHNKL-VKISCHPT--VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 243 RSNK-----------------FYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNM 285
            +                          Y        L+  +  + +        F   +
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182

Query: 286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP 345
                     + +  K + E         I+ + +            I+ + NSF   + 
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242

Query: 346 ELMGKLHSLRLLNLSQNILSGNIPSSLGD-----LTDLESLDLSSNVLDGVIPRELTRLT 400
            +     ++   ++S   L G +     D     L  L    + S+V            +
Sbjct: 243 LV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 401 FLAVLNLSRNKLE 413
            + + N + +   
Sbjct: 301 NMNIKNFTVSGTR 313

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 50/281 (17%), Positives = 99/281 (35%), Gaps = 30/281 (10%)

Query: 167 VLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT 226
           ++D  KN     +P+   +    T LN + N +       +L+ + L++L + +N+++  
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 227 FPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMK 286
                   +EL+ L L  NK    L           L+ LDLS N F        F NM 
Sbjct: 61  DISVFKFNQELEYLDLSHNK----LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 287 AMTDIG--------EAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI-FTTIDLSK 337
            +  +G         +        + +       T   K     L    T     +  + 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 338 NSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT-----------DLESLDLSSN 386
             FH  +   +  + +L L N+   +        L  L             L +++ + N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 387 VLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS 427
               ++  +L   T +   ++S  KL+G++   +   + +S
Sbjct: 236 SFIRIL--QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
             +D SKN     +P+         +LN+SQN +S    S +  L+ L  L +S N +  
Sbjct: 3   FLVDRSKNGLI-HVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 391 VIPRELTRLTFLAVLNLSRNKL 412
           +          L  L+LS NKL
Sbjct: 60  LDISVFKFNQELEYLDLSHNKL 81

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.5 bits (196), Expect = 6e-16
 Identities = 55/354 (15%), Positives = 114/354 (32%), Gaps = 78/354 (22%)

Query: 72  SAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNN-KFIGEI 130
           S     + +    L    +   +     L + L +        N+ +  I    K   ++
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269

Query: 131 PRLICNTSTIEILDLSNNSLSGTIPECIGNFS----KSLRVLDLRKNRFHGTIPETFPKG 186
            +       +E L++ N +++  I      +S    KSL +  ++   F  +    +   
Sbjct: 270 FQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 187 NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
             +     + ++          + ++   L+   N   D+      TL            
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL------------ 376

Query: 247 FYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET 306
                          +L+ L L  N    +   +                          
Sbjct: 377 --------------KRLQTLILQRNGLK-NFFKVALM----------------------- 398

Query: 307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSF-HGEIPELMGKLHSLRLLNLSQNILS 365
                             K ++   T+D+S NS              S+ +LNLS N+L+
Sbjct: 399 -----------------TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 366 GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           G++   L     ++ LDL +N +   IP+++T L  L  LN++ N+L+  +P+G
Sbjct: 442 GSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG 491

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 54/331 (16%), Positives = 91/331 (27%), Gaps = 28/331 (8%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFL---------ISNNKFIGEIPRLICNTSTIEILD 144
            L  L L  N ++      S +  VFL         +S+N+ +  I    C  +++  LD
Sbjct: 77  ELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNR-LQNISC--CPMASLRHLD 127

Query: 145 LSNNSLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS 202
           LS N     +P C   F     L  L L   +F           +    L    +  +  
Sbjct: 128 LSFNDFD-VLPVC-KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK 262
                L   N  VL L  +           ++  L  L L + K      + E       
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL-----NDENCQRLMT 240

Query: 263 LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322
                                  K    + +       +Y+   Y       I + +   
Sbjct: 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL-NIYNLTITERIDREEFTY 299

Query: 323 LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLD 382
               L       +    F      L      + +  LS +             +    L+
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 383 LSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
            + NV    + +  + L  L  L L RN L+
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 16/188 (8%)

Query: 94  NLEYLDLRSN---LLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
            +    L  +    +    P   S+      + N F   + +       ++ L L  N L
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 151 SGTIPECIGNFS--KSLRVLDLRKNRF-HGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
                +         SL  LD+  N         T     ++  LN + N L GSV R L
Sbjct: 390 K-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 208 LNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY--FSKLRI 265
                ++VLDL NN++  + P  +  L+ LQ L + SN+    L+      +   + L+ 
Sbjct: 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ----LKSVPDGVFDRLTSLQY 501

Query: 266 LDLSNNNF 273
           + L +N +
Sbjct: 502 IWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 58/309 (18%)

Query: 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKM 223
              ++D         +P+  P       L+ + N +       +   + L+VL L +N++
Sbjct: 32  LESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 224 K----DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLP- 278
           +      F       ++L+ L +  N+   ++    +    + LR LDLS N+F   LP 
Sbjct: 89  RSLDFHVFLF----NQDLEYLDVSHNRL-QNI----SCCPMASLRHLDLSFNDFD-VLPV 138

Query: 279 AMFFKNMKAMTDIG--------------------EAADENKSKYMGETYYEDSVTLIIKR 318
              F N+  +T +G                        +  S ++     E         
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198

Query: 319 QEVKLMKILTI---------------FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI 363
             +                        + I L+  +    +  L        LLN++   
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 364 LSGNIPSSLGDL-----TDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
           +      S+          +E L++ +  +   I RE    +  A+ +L    ++ ++  
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 419 GNQFATFSS 427
            ++ A +S 
Sbjct: 319 FSKEALYSV 327

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 53/355 (14%), Positives = 102/355 (28%), Gaps = 52/355 (14%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             L YL+  +N L     + +  +     + N  + EI   + + + +  LD   N    
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKI- 161

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
           T  +        L  LD   N+    +     +   L  LN + N +   +   L     
Sbjct: 162 TKLDVTPQ--TQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQ 213

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L  LD  +NK+       +  L +L       N               SKL  L     +
Sbjct: 214 LTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL-----TELDVSTLSKLTTLHCIQTD 265

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
               +       +                     Y++      IK  +V     L     
Sbjct: 266 LL-EIDLTHNTQL--------------------IYFQAEGCRKIKELDVTHNTQL---YL 301

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           +D        E+   + +   L  L L+   L+  +   +   T L+SL   +  +    
Sbjct: 302 LDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFS 355

Query: 393 PRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSN 447
              + ++  L     +  +      E     + +       L   G P++    +
Sbjct: 356 S--VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 49/323 (15%), Positives = 105/323 (32%), Gaps = 36/323 (11%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             L  L   SN +     + ++N+      +NK +  +   +   + +  L+   N L+ 
Sbjct: 64  TGLTKLICTSNNITTLDLSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLT- 119

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
            +       +  L  L+  +N     I         LT L+ + N+ +  +   +     
Sbjct: 120 KLDVSQ---NPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQ 171

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           L  LD   NK+ +     +   + L  L   +N     +   + +    +L  LD S+N 
Sbjct: 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNN----ITKLDLN-QNIQLTFLDCSSNK 223

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI--LTIF 330
            T  +       +  +T        N    +  +      TL   + ++  + +   T  
Sbjct: 224 LT-EID---VTPLTQLTYFD--CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
                       E+   +     L LL+     ++  +   L     L  L L++  L  
Sbjct: 278 IYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE 332

Query: 391 VIPRELTRLTFLAVLNLSRNKLE 413
           +     T+L     L+     ++
Sbjct: 333 LDVSHNTKLK---SLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 58/310 (18%), Positives = 99/310 (31%), Gaps = 66/310 (21%)

Query: 112 PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR 171
           P  N    + +  +            +T+  LD  N+S++  +   I   +  L  L   
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLT-GLTKLICT 72

Query: 172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWL 231
            N    T+     +  NLT L  + N+L  ++   +     L  L+   NK+       +
Sbjct: 73  SNNI-TTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLD---V 123

Query: 232 GTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDI 291
                L  L    N     L + +  +  ++L  LD   N     L          +T +
Sbjct: 124 SQNPLLTYLNCARNT----LTEIDVSH-NTQLTELDCHLNKKITKLD---VTPQTQLTTL 175

Query: 292 GEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNS-------FHGEI 344
                 NK                               T +D+S+N            I
Sbjct: 176 D--CSFNK------------------------------ITELDVSQNKLLNRLNCDTNNI 203

Query: 345 PEL-MGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLA 403
            +L + +   L  L+ S N L+  I   +  LT L   D S N L  +    L++LT   
Sbjct: 204 TKLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT--- 257

Query: 404 VLNLSRNKLE 413
            L+  +  L 
Sbjct: 258 TLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 56/322 (17%), Positives = 100/322 (31%), Gaps = 54/322 (16%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS-SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             L  LD  ++ +         + +   + ++N  I  +   +   + +  L   +N L+
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLT 98

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
             +   +   +K L  L+   N+    +  +  +   LT LN   N L   +   + +  
Sbjct: 99  -NLD--VTPLTK-LTYLNCDTNKLT-KLDVS--QNPLLTYLNCARNTLT-EID--VSHNT 148

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN 271
            L  LD   NK        +    +L  L    NK    + + +       L  L+   N
Sbjct: 149 QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK----ITELDVS-QNKLLNRLNCDTN 201

Query: 272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT 331
           N T  L          +T +      NK                +   +V  +  L   T
Sbjct: 202 NIT-KLD---LNQNIQLTFLD--CSSNK----------------LTEIDVTPLTQL---T 236

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
             D S N    E+      L  L  L+  Q  L   I   L   T L             
Sbjct: 237 YFDCSVNPLT-ELDV--STLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKE 290

Query: 392 IPRELTRLTFLAVLNLSRNKLE 413
           +  ++T  T L +L+     + 
Sbjct: 291 L--DVTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 43/237 (18%)

Query: 178 TIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLREL 237
           +  + FP  +N  +      E+  +   S    A L  LD  N+ + D     +  L  L
Sbjct: 10  SFNDWFP-DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGL 66

Query: 238 QVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE 297
             LI  SN     +   +     + L  L   +N  T +L       +  +T +    D 
Sbjct: 67  TKLICTSNN----ITTLDLSQ-NTNLTYLACDSNKLT-NLD---VTPLTKLTYLN--CDT 115

Query: 298 NKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPEL-MGKLHSLRL 356
           NK                + + +V    +LT    ++ ++N+    + E+ +     L  
Sbjct: 116 NK----------------LTKLDVSQNPLLT---YLNCARNT----LTEIDVSHNTQLTE 152

Query: 357 LNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
           L+   N     +   +   T L +LD S N +  +   ++++   L  LN   N + 
Sbjct: 153 LDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 8/133 (6%)

Query: 92  WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
              L  LD ++  +     + +  +    ++N + + E+   + + + ++ L   N  + 
Sbjct: 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQ 352

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
                 +G    +L      + +      ET    NN  T+  + + L        +   
Sbjct: 353 -DFSS-VGKI-PALNNNFEAEGQTITMPKETLT--NNSLTIAVSPDLLDQFGNPMNIEPG 407

Query: 212 NLQVLDLGNNKMK 224
           +  V D   N + 
Sbjct: 408 DGGVYDQATNTIT 420

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 44/283 (15%), Positives = 84/283 (29%), Gaps = 62/283 (21%)

Query: 134 ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE-TFPKGNNLTTL 192
            C     E   ++   +   IP    +   S + L L +     TIP   F    N++ +
Sbjct: 7   PCECHQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRI 60

Query: 193 NFNGNELVGSVPR-SLLNCANLQVLDLGNNKM-----KDTFPHWLGTLRELQVLILRSNK 246
             + +  +  +   S  N + +  +++ N +       D        L  L+ L + +  
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE----LPLLKFLGIFNTG 116

Query: 247 FYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET 306
                 D    Y      IL++++N +  S+P   F+ +   T                 
Sbjct: 117 L-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET----------------- 158

Query: 307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG 366
                                    T+ L  N F   +         L  + L++N    
Sbjct: 159 ------------------------LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 367 NIPSSL--GDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL 407
            I      G  +    LD+S   +  +  + L  L  L   N 
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 35/203 (17%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLIC-NTSTIEILDLSN 147
            N+  + +  ++    + + S    S +    I N + +  I          ++ L + N
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 148 NSLSGTIPECIGNFS-KSLRVLDLRKNRFHGTIPETFPKG--NNLTTLNFNGNELVGSVP 204
             L    P+    +S     +L++  N +  +IP    +G  N   TL    N    SV 
Sbjct: 115 TGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQ 172

Query: 205 RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR 264
               N   L  + L  NK           L  +       + F G          +S   
Sbjct: 173 GYAFNGTKLDAVYLNKNKY----------LTVID-----KDAFGG---------VYSGPS 208

Query: 265 ILDLSNNNFTGSLPAMFFKNMKA 287
           +LD+S  + T +LP+   +++K 
Sbjct: 209 LLDVSQTSVT-ALPSKGLEHLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 34/239 (14%), Positives = 83/239 (34%), Gaps = 32/239 (13%)

Query: 187 NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
           +          ++   +P SL    + Q L L    ++    H    L  +  + +  + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIP-SLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID- 65

Query: 247 FYGHLRDYEAD--YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG 304
               L+  E+   Y  SK+  +++ N      +     K +  +  +G            
Sbjct: 66  --VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG--IFNTG----- 116

Query: 305 ETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPE--LMGKLHSLRLLNLSQN 362
                     +    ++  +    IF  ++++ N +   IP     G  +    L L  N
Sbjct: 117 ----------LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 363 ILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR--LTFLAVLNLSRNKLEGRIPEG 419
             + ++     + T L+++ L+ N    VI ++      +  ++L++S+  +   +P  
Sbjct: 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK 223

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 94  NLEYLDLRSN----LLQGPVPAPSSNMRVFLISNNKFIGEIPRL--ICNTSTIEILDLSN 147
            + ++++R+      +          ++   I N   +   P L  + +T    IL++++
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITD 139

Query: 148 NSLSGTIPE-CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRS 206
           N    +IP             L L  N F  ++      G  L  +  N N+ +  + + 
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 207 LLN--CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245
                 +   +LD+    +    P     L  L+ LI R+ 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 331 TTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPS-SLGDLTDLESLDLSSN-V 387
            T+ L +      IP      L ++  + +S ++    + S S  +L+ +  +++ +   
Sbjct: 34  QTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 388 LDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQF 422
           L  + P  L  L  L  L +    L+   P+  + 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKV 126

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 9e-15
 Identities = 44/268 (16%), Positives = 79/268 (29%), Gaps = 32/268 (11%)

Query: 123 NNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIP 180
               + EIP  +        L      L   I +  G FS    L  +++ +N     I 
Sbjct: 17  QESKVTEIPSDL--PRNAIELRFVLTKLR-VIQK--GAFSGFGDLEKIEISQNDVLEVIE 71

Query: 181 -ETFPKGNNLTTLNF-NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ 238
            + F     L  +     N L+   P +  N  NLQ L + N  +K           +  
Sbjct: 72  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131

Query: 239 VLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN 298
           +L ++ N     +          +  IL L+ N     +    F   +        +D N
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL--NLSDNN 188

Query: 299 KSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLN 358
                            ++     +    +    +D+S+   H      +  L  LR  +
Sbjct: 189 N----------------LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232

Query: 359 LSQNILSGNIPSSLGDLTDLESLDLSSN 386
                    +P +L  L  L    L+  
Sbjct: 233 TYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 38/281 (13%), Positives = 78/281 (27%), Gaps = 56/281 (19%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           C+           + ++  IP    +  ++   L     +        F    +L  +  
Sbjct: 9   CSNRV---FLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 195 NGNELVGSVPRSLL-NCANLQVLDLGN-NKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252
           + N+++  +   +  N   L  + +   N +    P     L  LQ L++ +     HL 
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLP 120

Query: 253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSV 312
           D     +  +  +LD+ +N    ++    F  +   +                       
Sbjct: 121 DV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES----------------------- 156

Query: 313 TLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNILSGNIPS- 370
                               + L+KN    EI            L     N L   +P+ 
Sbjct: 157 ------------------VILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPND 196

Query: 371 SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNK 411
                +    LD+S   +  +    L  L  L   +    K
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 34/185 (18%), Positives = 58/185 (31%), Gaps = 13/185 (7%)

Query: 93  KNLEYLDL-RSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTST-IEILDLSN 147
             L  + + ++N L    P       N++  LISN   I  +P +    S    +LD+ +
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137

Query: 148 NSLSGTIPE-CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRS 206
           N    TI        S    +L L KN         F           + N L       
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 207 LLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRIL 266
               +   +LD+   ++     + L  L++L+     + K    L           L   
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEK------LVALMEA 251

Query: 267 DLSNN 271
            L+  
Sbjct: 252 SLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 27/235 (11%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
           +        +++   +P  L    N   L     K++           +L+ + +  N  
Sbjct: 10  SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
              +   +      KL  + +   N    +    F+N+  +  +                
Sbjct: 67  LEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL--ISNTG-------- 115

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPE--LMGKLHSLRLLNLSQNILS 365
                   IK               +D+  N     I     +G      +L L++N + 
Sbjct: 116 --------IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 366 GNIPSSLGDLTDLESLDLSS-NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
             I +S  + T L+ L+LS  N L+ +        +   +L++SR ++   +P  
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY 220

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 30/174 (17%)

Query: 94  NLEYLDLRSNLLQGPVPA----PSSNMRVFLISNNKFIGEIPR--LICNTSTIEILDLSN 147
           NL+YL + +  ++  +P      S    +  I +N  I  I R   +  +    IL L+ 
Sbjct: 105 NLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 148 NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSL 207
           N +   I     N ++   +     N       + F   +    L+ +   +  S+P   
Sbjct: 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 221

Query: 208 L---------------------NCANLQVLDLGNNKMKDTFPHWLGTLRELQVL 240
           L                         L    L        F +W   + EL  +
Sbjct: 222 LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPI 275

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 3e-14
 Identities = 55/270 (20%), Positives = 94/270 (34%), Gaps = 64/270 (23%)

Query: 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS 202
               +  +    P     F++     +L+K     T   T  + N++  +  N +++   
Sbjct: 4   TITVSTPIKQIFP--DDAFAE-TIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDI--K 56

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK 262
             + +    N+  L L  NK+ D  P  L  L+ L  L L  NK    ++D  +     K
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKK 110

Query: 263 LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322
           L+ L L +N  +                                             ++ 
Sbjct: 111 LKSLSLEHNGIS---------------------------------------------DIN 125

Query: 323 LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLD 382
            +  L    ++ L  N    +I  L  +L  L  L+L  N +S +I   L  LT L++L 
Sbjct: 126 GLVHLPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLY 181

Query: 383 LSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           LS N +  +  R L  L  L VL L   + 
Sbjct: 182 LSKNHISDL--RALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 4e-14
 Identities = 62/293 (21%), Positives = 99/293 (33%), Gaps = 63/293 (21%)

Query: 120 LISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTI 179
            I+ +  I +I       +     +L   S++  +         S+  +    +      
Sbjct: 4   TITVSTPIKQIFPD-DAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDI--KS 57

Query: 180 PETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQV 239
            +      N+T L  NGN+L    P  L N  NL  L L  NK+KD     L  L++L+ 
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKS 113

Query: 240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK 299
           L L  N     + D     +  +L  L L NN                +TDI        
Sbjct: 114 LSLEHNG----ISDINGLVHLPQLESLYLGNNK---------------ITDI-----TVL 149

Query: 300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNL 359
           S+                         LT   T+ L  N    +I  L   L  L+ L L
Sbjct: 150 SR-------------------------LTKLDTLSLEDNQIS-DIVPLA-GLTKLQNLYL 182

Query: 360 SQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
           S+N +S ++  +L  L +L+ L+L S           + L     +  +   L
Sbjct: 183 SKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 3e-12
 Identities = 53/323 (16%), Positives = 100/323 (30%), Gaps = 89/323 (27%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
                 +L+   +   V                            ++I+ +  +N+ +  
Sbjct: 21  AETIKDNLKKKSVTDAVT-----------------------QNELNSIDQIIANNSDIK- 56

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGN--NLTTLNFNGNELVGSVPRSLLNC 210
           ++ + I     ++  L L  N+    + +  P  N  NL  L  + N++      SL + 
Sbjct: 57  SV-QGIQYL-PNVTKLFLNGNK----LTDIKPLTNLKNLGWLFLDENKI--KDLSSLKDL 108

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
             L+ L L +N + D     L  L +L+ L L +NK    + D       +KL  L L +
Sbjct: 109 KKLKSLSLEHNGISDING--LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLED 162

Query: 271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF 330
           N                ++DI   A                               LT  
Sbjct: 163 NQ---------------ISDIVPLAG------------------------------LTKL 177

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
             + LSKN    ++  L   L +L +L L          +   +L    ++  +   L  
Sbjct: 178 QNLYLSKNHIS-DLRAL-AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV- 234

Query: 391 VIPRELTRLTFLAVLNLSRNKLE 413
             P  ++        N+  +  E
Sbjct: 235 -TPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 34/201 (16%), Positives = 63/201 (31%), Gaps = 57/201 (28%)

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
           +      +  +K  FP       E     L+       + D       + +  +  +N++
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNSD 54

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
                     + ++ + ++                                       T 
Sbjct: 55  IKS------VQGIQYLPNV---------------------------------------TK 69

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
           + L+ N    +I  L   L +L  L L +N +  ++ SSL DL  L+SL L  N +  + 
Sbjct: 70  LFLNGNKLT-DIKPL-TNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISDIN 125

Query: 393 PRELTRLTFLAVLNLSRNKLE 413
              L  L  L  L L  NK+ 
Sbjct: 126 G--LVHLPQLESLYLGNNKIT 144

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 52/234 (22%), Positives = 74/234 (31%), Gaps = 56/234 (23%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
           +   +N +   L  ++P  L    +  +L L  N +       L     L  L L   + 
Sbjct: 11  SHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
              L   + D     L  LDLS+N    SLP +                           
Sbjct: 67  ---LTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQT------------------------ 98

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSG 366
                              L   T +D+S N     +P   +  L  L+ L L  N L  
Sbjct: 99  -------------------LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK- 137

Query: 367 NIPSSLGD-LTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
            +P  L      LE L L++N L  +    L  L  L  L L  N L   IP+G
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 12/157 (7%)

Query: 94  NLEYLDLRSNLLQG-PVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            L  L+L    L    V      +    +S+N+ +  +P L      + +LD+S N L+ 
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLT- 113

Query: 153 TIPECIGNFSK--SLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNGNELVGSVPRSLL- 208
           ++P   G       L+ L L+ N    T+P         L  L+   N L   +P  LL 
Sbjct: 114 SLPL--GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245
              NL  L L  N +  T P        L    L  N
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 40/208 (19%), Positives = 68/208 (32%), Gaps = 37/208 (17%)

Query: 94  NLEYLDLRSNLLQGPVPA--PSSNMRVFLISNNKFIGEIPR-LICNTSTIEILDLSNNSL 150
           +   ++     L   +P   P     + L  N   +       +   + +  L+L    L
Sbjct: 11  SHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-N 209
           +  +   +      L  LDL  N+   ++P        LT L+ + N L  S+P   L  
Sbjct: 68  T-KLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122

Query: 210 CANLQVLDLGNNKMK----DTFPHWLGTLRELQVLILRSNKF-------YGHLRDYEADY 258
              LQ L L  N++K               +L+ L L +N            L       
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTP----TPKLEKLSLANNNLTELPAGLLNGL------- 171

Query: 259 YFSKLRILDLSNNNFTGSLPAMFFKNMK 286
               L  L L  N+   ++P  FF +  
Sbjct: 172 --ENLDTLLLQENSLY-TIPKGFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 50/255 (19%), Positives = 80/255 (31%), Gaps = 60/255 (23%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
              S +E ++    +L+  +P    +  K   +L L +N  +     T      LT LN 
Sbjct: 8   KVASHLE-VNCDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY 254
           +  EL  +  +       L  LDL +N+++ + P    TL  L VL +  N+    L   
Sbjct: 63  DRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR----LTSL 115

Query: 255 EADYY--FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSV 312
                    +L+ L L  N    +LP                                  
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTP---------------------------- 146

Query: 313 TLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPSS 371
                               + L+ N+   E+P  L+  L +L  L L +N L   IP  
Sbjct: 147 --------------TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 372 LGDLTDLESLDLSSN 386
                 L    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 53/250 (21%), Positives = 88/250 (35%), Gaps = 61/250 (24%)

Query: 163 KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK 222
                 +L+K     T   T  + N++  +  N +++     + +    N+  L L  NK
Sbjct: 24  AETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNK 79

Query: 223 MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFF 282
           + D  P  L  L+ L  L L  NK    ++D  +     KL+ L L +N  +        
Sbjct: 80  LTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGIS-------- 125

Query: 283 KNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG 342
                                                ++  +  L    ++ L  N    
Sbjct: 126 -------------------------------------DINGLVHLPQLESLYLGNNKIT- 147

Query: 343 EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFL 402
           +I  L  +L  L  L+L  N +S +I   L  LT L++L LS N +  +  R L  L  L
Sbjct: 148 DITVL-SRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHISDL--RALAGLKNL 202

Query: 403 AVLNLSRNKL 412
            VL L   + 
Sbjct: 203 DVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 21/202 (10%)

Query: 93  KNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
            +++ +   ++ ++         N+    ++ NK + +I  L  N   +  L L  N + 
Sbjct: 46  NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKPL-ANLKNLGWLFLDENKVK 103

Query: 152 GTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
                 + +    K L+ L L  N    +          L +L    N++  +    L  
Sbjct: 104 -----DLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKI--TDITVLSR 154

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
              L  L L +N++ D  P  L  L +LQ L L  N     + D  A      L +L+L 
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELF 208

Query: 270 NNNFTGSLPAMFFKNMKAMTDI 291
           +     + P     N+     +
Sbjct: 209 SQECL-NKPINHQSNLVVPNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 20/185 (10%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS-SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
                 +L+   +   V     +++   + +N+  I  +  +    + +  L L+ N L+
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD-IKSVQGIQYLPN-VTKLFLNGNKLT 81

Query: 152 GTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
                 I   +  K+L  L L +N+       +      L +L+   N +  S    L++
Sbjct: 82  D-----IKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGI--SDINGLVH 132

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
              L+ L LGNNK+ D     L  L +L  L L  N+    + D       +KL+ L LS
Sbjct: 133 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLYLS 186

Query: 270 NNNFT 274
            N+ +
Sbjct: 187 KNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 43/226 (19%), Positives = 70/226 (30%), Gaps = 59/226 (26%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
                N     +  +V        ++  +   N+ +K      +  L  +  L L  NK 
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK- 79

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
              L D +       L  L L  N                                    
Sbjct: 80  ---LTDIKPLANLKNLGWLFLDENKVK--------------------------------- 103

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
                       ++  +K L    ++ L  N    +I  L   L  L  L L  N ++ +
Sbjct: 104 ------------DLSSLKDLKKLKSLSLEHNGIS-DINGL-VHLPQLESLYLGNNKIT-D 148

Query: 368 IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
           I + L  LT L++L L  N +  ++P  L  LT L  L LS+N + 
Sbjct: 149 I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 14/158 (8%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS-SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
           KNL +L L  N ++          ++   + +N  I +I  L+     +E L L NN ++
Sbjct: 90  KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQ-LESLYLGNNKIT 147

Query: 152 GTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
                 I   S    L  L L  N+   +          L  L  + N +  S  R+L  
Sbjct: 148 -----DITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHI--SDLRALAG 198

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
             NL VL+L + +  +   +    L     +       
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 57/196 (29%)

Query: 218 LGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSL 277
                +K  F        E     L+       + D       + +  +  +N++     
Sbjct: 9   TVPTPIKQIFS--DDAFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNSDIK--- 59

Query: 278 PAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSK 337
                                                      V+ ++ L   T + L+ 
Sbjct: 60  ------------------------------------------SVQGIQYLPNVTKLFLNG 77

Query: 338 NSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELT 397
           N    +I  L   L +L  L L +N +  ++ SSL DL  L+SL L  N +  +    L 
Sbjct: 78  NKLT-DIKPL-ANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDING--LV 131

Query: 398 RLTFLAVLNLSRNKLE 413
            L  L  L L  NK+ 
Sbjct: 132 HLPQLESLYLGNNKIT 147

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 8e-13
 Identities = 50/292 (17%), Positives = 97/292 (33%), Gaps = 41/292 (14%)

Query: 121 ISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIP 180
           I+    I  I       + I+ +    ++++ T+     +    +  L         T  
Sbjct: 3   ITQPTAINVIFPDPALANAIK-IAAGKSNVTDTVT--QADL-DGITTLSAFGTGV--TTI 56

Query: 181 ETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL 240
           E     NNL  L    N++  +    L N   +  L+L  N +K+     +  L+ ++ L
Sbjct: 57  EGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112

Query: 241 ILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS 300
            L S +    + D       S L++L L  N  T ++       +  +  +         
Sbjct: 113 DLTSTQ----ITDVTPLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYL--------- 156

Query: 301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLS 360
             +G     D   L            L+  TT+    N    +I  L   L +L  ++L 
Sbjct: 157 -SIGNAQVSDLTPL----------ANLSKLTTLKADDNKIS-DISPL-ASLPNLIEVHLK 203

Query: 361 QNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL 412
            N +S    S L + ++L  + L++  +          L    V+       
Sbjct: 204 NNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 35/207 (16%)

Query: 207 LLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRIL 266
               AN   +  G + + DT       L  +  L          +   E   Y + L  L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGL 68

Query: 267 DLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI 326
           +L +N  T  L     KN+  +T++      N  K                   V  +  
Sbjct: 69  ELKDNQIT-DLAP--LKNLTKITELE--LSGNPLK------------------NVSAIAG 105

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386
           L    T+DL+      ++  L   L +L++L L  N ++ NI S L  LT+L+ L + + 
Sbjct: 106 LQSIKTLDLTSTQIT-DVTPL-AGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNA 161

Query: 387 VLDGVIPRELTRLTFLAVLNLSRNKLE 413
            +  + P  L  L+ L  L    NK+ 
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 29/163 (17%)

Query: 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYED 310
           +     D   +    +    +N T ++      ++  +T +  +A               
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVT---QADLDGITTL--SAFGTG----------- 52

Query: 311 SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPS 370
                +    ++ ++ L     ++L  N    ++  L   L  +  L LS N L  N+ S
Sbjct: 53  -----VT--TIEGVQYLNNLIGLELKDNQIT-DLAPL-KNLTKITELELSGNPLK-NV-S 101

Query: 371 SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
           ++  L  +++LDL+S  +  V P  L  L+ L VL L  N++ 
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT 142

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 37/186 (19%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            +L Y+ L +                  +++   I     +       + L ++N   + 
Sbjct: 44  NSLTYITLANIN----------------VTDLTGIEYAHNI-------KDLTINNIHATN 80

Query: 153 TIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
                    S   +L  L +                 +LT L+ + +    S+   +   
Sbjct: 81  -----YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 211 ANLQVLDL-GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
             +  +DL  N  + D  P  L TL EL+ L ++ +     + DY     F KL  L   
Sbjct: 136 PKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG----VHDYRGIEDFPKLNQLYAF 189

Query: 270 NNNFTG 275
           +    G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 52/207 (25%)

Query: 206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRI 265
           +     +L  + L N  + D     +     ++ L + +        +Y      S L  
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH----ATNYNPISGLSNLER 92

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           L +   + T                                                   
Sbjct: 93  LRIMGKDVTSDKIPNLSG------------------------------------------ 110

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
            LT  T +D+S ++    I   +  L  +  ++LS N    +I   L  L +L+SL++  
Sbjct: 111 -LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQF 168

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKL 412
           + +       +     L  L      +
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386
           +   T I L+  +   ++  +    H+++ L ++    + N  + +  L++LE L +   
Sbjct: 43  MNSLTYITLANINVT-DLTGI-EYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGK 98

Query: 387 VLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
            +       L+ LT L +L++S +  +  I   
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 6/164 (3%)

Query: 138 STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNG 196
           S   +LDLS+N+LS    E       +L  L L  N  +  I    F    NL  L+ + 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 197 NELVGSVPRSLL-NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF-YGHLRDY 254
           N L  ++   L  +   L+VL L NN +     +    + +LQ L L  N+     +   
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 255 EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN 298
           +      KL +LDLS+N     LP    + + A    G     N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 49/258 (18%), Positives = 76/258 (29%), Gaps = 82/258 (31%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKG-NNLTTLN 193
           C ++    L  S   L   +P+   +      +LDL  N       E  P    NL +L 
Sbjct: 18  CASNI---LSCSKQQLP-NVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLL 70

Query: 194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRD 253
            + N L      + +   NL+ LDL +N +  T         +L                
Sbjct: 71  LSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDE--FLFSDL---------------- 111

Query: 254 YEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVT 313
                    L +L L NN+    +    F++                             
Sbjct: 112 -------QALEVLLLYNNHIV-VVDRNAFED----------------------------- 134

Query: 314 LIIKRQEVKLMKILTIFTTIDLSKN---SFHGEIPELMGKLHSLRLLNLSQNILSGNIPS 370
                        +     + LS+N    F  E+ +   KL  L LL+LS N L     +
Sbjct: 135 -------------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 371 SLGDLTDL--ESLDLSSN 386
            L  L       L L +N
Sbjct: 182 DLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 41/175 (23%), Positives = 59/175 (33%), Gaps = 14/175 (8%)

Query: 109 VPAP-SSNMRVFLISNNKFIGEIPRLI--CNTSTIEILDLSNNSLSGTIPECIGNFSK-- 163
           VP    S   +  +S+N  +  +         + +  L LS+N L+  I      F    
Sbjct: 33  VPQSLPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS--EAFVPVP 88

Query: 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKM 223
           +LR LDL  N  H      F     L  L    N +V     +  + A LQ L L  N++
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 224 K----DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274
                +        L +L +L L SNK                   L L NN   
Sbjct: 149 SRFPVELI-KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 52/190 (27%)

Query: 235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEA 294
               +L L  N     LR        + L  L LS+N+    + +  F            
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVP---------- 86

Query: 295 ADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELM-GKLHS 353
                                           +     +DLS N  H  + E +   L +
Sbjct: 87  --------------------------------VPNLRYLDLSSNHLH-TLDEFLFSDLQA 113

Query: 354 LRLLNLSQNILSGNIPS-SLGDLTDLESLDLSSNVLDGVIP---RELTRLTFLAVLNLSR 409
           L +L L  N +   +   +  D+  L+ L LS N +        ++  +L  L +L+LS 
Sbjct: 114 LEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 410 NKLEGRIPEG 419
           NKL+ ++P  
Sbjct: 173 NKLK-KLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 47/214 (21%), Positives = 68/214 (31%), Gaps = 57/214 (26%)

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHW-LGTLRELQVLILRSNKFYGHLRDYEAD--Y 258
           +VP+SL   +   +LDL +N +      W    L  L  L+L  N     L    ++   
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFV 85

Query: 259 YFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKR 318
               LR LDLS+N+   +L    F ++                                 
Sbjct: 86  PVPNLRYLDLSSNHLH-TLDEFLFSDL--------------------------------- 111

Query: 319 QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP----SSLGD 374
               L         + L  N            +  L+ L LSQN +S   P         
Sbjct: 112 --QAL-------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNK 161

Query: 375 LTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408
           L  L  LDLSSN L  +   +L +L       L 
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 39/157 (24%), Positives = 52/157 (33%), Gaps = 31/157 (19%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            NL  L L  N L               IS+  F+            +  LDLS+N L  
Sbjct: 64  TNLHSLLLSHNHLN-------------FISSEAFVP--------VPNLRYLDLSSNHLH- 101

Query: 153 TIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP----RS 206
           T+ E    FS   +L VL L  N         F     L  L  + N++    P    + 
Sbjct: 102 TLDE--FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKD 158

Query: 207 LLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243
                 L +LDL +NK+K      L  L       L 
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 93  KNLEYLDLRSNLLQGPVPAPS----SNMRVFLISNNKFIGEIPRLI-CNTSTIEILDLSN 147
            NL YLDL SN L   +          + V L+ NN  I  + R    + + ++ L LS 
Sbjct: 88  PNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ 145

Query: 148 NSLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLT--TLNFNGN 197
           N +S    E I + +K   L +LDL  N+          K        L  + N
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 6e-12
 Identities = 57/370 (15%), Positives = 109/370 (29%), Gaps = 67/370 (18%)

Query: 93  KNLEYLDLRSNLLQGPV-----PAPSSNMRVFLISNN---KFIGEIPRLICNTSTIEILD 144
            +++ LD++   L         P       V L           +I   +     +  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 145 LSNNSLSG----TIPECIGNFSKSLRVLDLRKNRFHGT----IPETFPKGNNLTTLNFNG 196
           L +N L       + + +   S  ++ L L+     G     +  T      L  L+ + 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 197 NELVGSVPRSLL-----NCANLQVLDLGNNKMKDT----FPHWLGTLRELQVLILRSNKF 247
           N L  +  + L          L+ L L    +           L    + + L + +N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-- 180

Query: 248 YGHLRDYEADYYFS-------KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS 300
              + +               +L  L L +   T               D+        S
Sbjct: 181 --DINEAGVRVLCQGLKDSPCQLEALKLESCGVTS----------DNCRDLCGIVASKAS 228

Query: 301 K---YMGETYYEDS-VTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE----IPELMGKLH 352
                +G     D  +  +       L+   +   T+ + +     +    +  ++    
Sbjct: 229 LRELALGSNKLGDVGMAELCPG----LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 353 SLRLLNLSQNILSGNIPSSLGDL-----TDLESLDLSSNVLDGV----IPRELTRLTFLA 403
           SL+ L+L+ N L       L +        LESL + S              L +  FL 
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344

Query: 404 VLNLSRNKLE 413
            L +S N+LE
Sbjct: 345 ELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 58/366 (15%), Positives = 109/366 (29%), Gaps = 76/366 (20%)

Query: 89  KLPWKNLEYLDLRSNLLQ-------GPVPAPSSNMRVFLISNNKFIGEIPRLIC-----N 136
           + P   ++ L L++  L                 ++   +S+N       +L+C      
Sbjct: 81  QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140

Query: 137 TSTIEILDLSNNSLSGTIPECIGN---FSKSLRVLDLRKNRFHGT----IPETFPKGN-N 188
              +E L L   SLS    E + +        + L +  N  +      + +        
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 189 LTTLNFNGNEL----VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRS 244
           L  L      +       +   + + A+L+ L LG+NK+ D        + EL   +L  
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV------GMAELCPGLLHP 254

Query: 245 NKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSK--- 301
           +                +LR L +     T           K   D+       +S    
Sbjct: 255 SS---------------RLRTLWIWECGITA----------KGCGDLCRVLRAKESLKEL 289

Query: 302 YMGETYYEDS-VTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE----IPELMGKLHSLRL 356
            +      D    L+ +     L++      ++ +   SF          ++ +   L  
Sbjct: 290 SLAGNELGDEGARLLCE----TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 357 LNLSQNILSGNIPSSLGDL-----TDLESLDLSSNVL--DGV--IPRELTRLTFLAVLNL 407
           L +S N L       L        + L  L L+   +       +   L     L  L+L
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 408 SRNKLE 413
           S N L 
Sbjct: 406 SNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 65/372 (17%), Positives = 109/372 (29%), Gaps = 99/372 (26%)

Query: 80  DGPKLLGNKKL-PWKNLEYLDLRSNLLQ-------GPVPAPSSNMRVFLISNNKFIGEIP 131
            G +LL    L P   LE L L    L          V     + +   +SNN       
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187

Query: 132 RLIC-----NTSTIEILDLSNNSLSGTIPECIGN---FSKSLRVLDLRKNRFHGT----I 179
           R++C     +   +E L L +  ++      +        SLR L L  N+        +
Sbjct: 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247

Query: 180 PETFPKGN-NLTTLNFNGNEL----VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTL 234
                  +  L TL      +     G + R L    +L+ L L  N++ D         
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE------GA 301

Query: 235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEA 294
           R L   +L                   +L  L + + +FT              +     
Sbjct: 302 RLLCETLLEPG---------------CQLESLWVKSCSFTA----------ACCSHFSSV 336

Query: 295 ADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE----IPELMGK 350
             +N+                                 + +S N         + + +G+
Sbjct: 337 LAQNRF-----------------------------LLELQISNNRLEDAGVRELCQGLGQ 367

Query: 351 LHS-LRLLNLSQNILS----GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL-----T 400
             S LR+L L+   +S     ++ ++L     L  LDLS+N L      +L         
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 427

Query: 401 FLAVLNLSRNKL 412
            L  L L     
Sbjct: 428 LLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 50/338 (14%), Positives = 99/338 (29%), Gaps = 79/338 (23%)

Query: 113 SSNMRVFLISNNKFIGE-IPRLICNTSTIEILDLSNNSLSGTIPECIGN---FSKSLRVL 168
           S +++   I   +        L+      +++ L +  L+    + I +    + +L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 169 DLRKNRFHG----TIPETFPKGN-NLTTLNFNGNEL----VGSVPRSLLNCANLQVLDLG 219
           +LR N         + +     +  +  L+     L     G +  +L     LQ L L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 220 NNKMKDTFPHWLGTLRE-----LQVLILRSNKFYGHLRDYEADYYFS------KLRILDL 268
           +N + D     L          L+ L L        L     +   S        + L +
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC----SLSAASCEPLASVLRAKPDFKELTV 177

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
           SNN+   +           +  + +   ++  +                           
Sbjct: 178 SNNDINEA----------GVRVLCQGLKDSPCQ--------------------------- 200

Query: 329 IFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGN-----IPSSLGDLTDLE 379
               + L       +    +  ++    SLR L L  N L         P  L   + L 
Sbjct: 201 -LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 380 SLDLSSNVLDGV----IPRELTRLTFLAVLNLSRNKLE 413
           +L +    +       + R L     L  L+L+ N+L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 32/208 (15%), Positives = 65/208 (31%), Gaps = 49/208 (23%)

Query: 93  KNLEYLDLRSNLLQ-------GPVPAPSSNMRVFLISNNKFIGEIPRLIC-----NTSTI 140
             L  L +    +          V     +++   ++ N+   E  RL+C         +
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 141 EILDLSNNSLSGTIPECIGN---FSKSLRVLDLRKNRFHGT----IPETFPKGN-NLTTL 192
           E L + + S +        +    ++ L  L +  NR        + +   +    L  L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 193 NFNGNEL----VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLI--LRSNK 246
                ++      S+  +LL   +L+ LDL NN + D           +  L+  +R   
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA---------GILQLVESVRQPG 426

Query: 247 FYGHLRDYEADYYFSKLRILDLSNNNFT 274
                           L  L L +  ++
Sbjct: 427 --------------CLLEQLVLYDIYWS 440

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 5e-11
 Identities = 44/241 (18%), Positives = 71/241 (29%), Gaps = 31/241 (12%)

Query: 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLG 232
                           L     +  +    +   L +C  LQ L+  N     T    + 
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 233 TLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIG 292
            L  L         F             S L+ +D     +   L + F      +    
Sbjct: 394 ALDPLLYEKETLQYF-------------STLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 293 EAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLH 352
                    +   T              +  ++ L + T +DLS N     +P  +  L 
Sbjct: 441 ADVRVLHLAHKDLT-------------VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALR 486

Query: 353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV-IPRELTRLTFLAVLNLSRNK 411
            L +L  S N L  N+   + +L  L+ L L +N L      + L     L +LNL  N 
Sbjct: 487 CLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 412 L 412
           L
Sbjct: 545 L 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 9e-11
 Identities = 29/191 (15%), Positives = 66/191 (34%), Gaps = 10/191 (5%)

Query: 88  KKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN 147
             L  +     +L+    +      +  + +  +    +  E  +       ++ +  + 
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 148 N----SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSV 203
                S        +      +RVL L       T+     +   +T L+ + N L  ++
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 204 PRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKL 263
           P +L     L+VL   +N ++      +  L  LQ L+L +N+        +      +L
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL-QQSAAIQPLVSCPRL 535

Query: 264 RILDLSNNNFT 274
            +L+L  N+  
Sbjct: 536 VLLNLQGNSLC 546

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 45/318 (14%), Positives = 92/318 (28%), Gaps = 88/318 (27%)

Query: 129 EIPRLICNTSTIEILDLSNNSLSGTIPECIGNF---SKSLRVLDLRKNRFHGTIPETFPK 185
            +  ++    +++ + LS N++       +       K L + +     F G + +  P+
Sbjct: 23  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPE 81

Query: 186 G-----------NNLTTLNFNGNEL----VGSVPRSLLNCANLQVLDLGNNKMKDTFPHW 230
                         L T+  + N         +   L     L+ L L NN +       
Sbjct: 82  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141

Query: 231 LGT-LRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMT 289
           +   L+EL V     N                 LR +    N               +M 
Sbjct: 142 IARALQELAVNKKAKNA--------------PPLRSIICGRNRLEN----------GSMK 177

Query: 290 DIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE-----I 344
           +  +    ++                                T+ + +N    E     +
Sbjct: 178 EWAKTFQSHRL-----------------------------LHTVKMVQNGIRPEGIEHLL 208

Query: 345 PELMGKLHSLRLLNLSQNILSGN----IPSSLGDLTDLESLDLSSNVL--DGV--IPREL 396
            E +     L++L+L  N  +      +  +L    +L  L L+  +L   G   +    
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 397 TRLTF--LAVLNLSRNKL 412
           ++L    L  L L  N++
Sbjct: 269 SKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 45/306 (14%), Positives = 79/306 (25%), Gaps = 82/306 (26%)

Query: 137 TSTIEILDLSNNSLSGTIPECIGNF---SKSLRVLDLRKNRF--HGT--IPETFPKGNNL 189
             +IE   L  ++++    + +        S++ + L  N         + E      +L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 190 TTLNFNGNEL----------VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQV 239
               F+              +  + ++LL C  L  + L +N    T    L        
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF----- 117

Query: 240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK 299
             L  +                 L  L L NN              +A   I  A     
Sbjct: 118 --LSKHT---------------PLEHLYLHNNGLG----------PQAGAKIARA----- 145

Query: 300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE----IPELMGKLHSLR 355
                          + +    K  K      +I   +N           +       L 
Sbjct: 146 ---------------LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190

Query: 356 LLNLSQNIL-----SGNIPSSLGDLTDLESLDLSSNVL--DGV--IPRELTRLTFLAVLN 406
            + + QN +        +   L    +L+ LDL  N     G   +   L     L  L 
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250

Query: 407 LSRNKL 412
           L+   L
Sbjct: 251 LNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 37/211 (17%), Positives = 58/211 (27%), Gaps = 46/211 (21%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS--- 149
             L  + L  N   GP                + + +    +   + +E L L NN    
Sbjct: 94  PKLHTVRLSDNAF-GPTAQ-------------EPLID---FLSKHTPLEHLYLHNNGLGP 136

Query: 150 ---------LSGTIPECIGNFSKSLRVLDLRKNRFHG----TIPETFPKGNNLTTLNFNG 196
                    L           +  LR +   +NR          +TF     L T+    
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

Query: 197 NEL-----VGSVPRSLLNCANLQVLDLGNNKMKDT----FPHWLGTLRELQVLILRSNKF 247
           N +        +   L  C  L+VLDL +N             L +   L+ L L     
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

Query: 248 YG----HLRDYEADYYFSKLRILDLSNNNFT 274
                  + D  +      L+ L L  N   
Sbjct: 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 28/160 (17%)

Query: 93  KNLEYLDLRSNLLQ-------GPVPAPSSNMRVFLISNNKFIGE-----IPRLICNTSTI 140
             L  +    N L+                +    +  N    E     +   +     +
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 141 EILDLSNNSLSGT----IPECIGNFSKSLRVLDLRKNRFHGT----IPETFPKGNN--LT 190
           ++LDL +N+ +      +   + +   +LR L L            + + F K  N  L 
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277

Query: 191 TLNFNGNELVGSVPRSLL-----NCANLQVLDLGNNKMKD 225
           TL    NE+     R+L         +L  L+L  N+  +
Sbjct: 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 57/285 (20%), Positives = 88/285 (30%), Gaps = 64/285 (22%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
                I        +    IP+   N   S + LDL  N        +F     L  L+ 
Sbjct: 5   EVVPNITY-QCMELNFY-KIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 195 NGNEL----VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250
           +  E+     G   +SL   ++L  L L  N ++         L  LQ L+         
Sbjct: 60  SRCEIQTIEDG-AYQSL---SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-AS 114

Query: 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAM-FFKNMKAMTDIGEAADENKSKYMGETYYE 309
           L ++    +   L+ L++++N    S     +F N                         
Sbjct: 115 LENFPIG-HLKTLKELNVAHNLIQ-SFKLPEYFSN------------------------- 147

Query: 310 DSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRL----LNLSQNILS 365
                            LT    +DLS N         +  LH + L    L+LS N ++
Sbjct: 148 -----------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 366 GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN 410
             I         L+ L L +N L  V      RLT L  + L  N
Sbjct: 191 -FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 58/299 (19%), Positives = 98/299 (32%), Gaps = 99/299 (33%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
           + + LDL  N L+              + +  F    P L       ++LDLS   +  T
Sbjct: 29  STKNLDLSFNPLRH-------------LGSYSFFS-FPEL-------QVLDLSRCEIQ-T 66

Query: 154 IPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA 211
           I +  G +     L  L L               GN + +L             +    +
Sbjct: 67  IED--GAYQSLSHLSTLILT--------------GNPIQSLA----------LGAFSGLS 100

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK---LRILDL 268
           +LQ L      +       +G L+ L+ L +  N     ++ ++   YFS    L  LDL
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL----IQSFKLPEYFSNLTNLEHLDL 156

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
           S+N    S+     +                                       L ++  
Sbjct: 157 SSNKIQ-SIYCTDLRV--------------------------------------LHQMPL 177

Query: 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLSSN 386
           +  ++DLS N  +  I     K   L+ L L  N L  ++P  + D LT L+ + L +N
Sbjct: 178 LNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 14/163 (8%)

Query: 93  KNLEYLDLRSNLLQ---GPVPAPSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSNN 148
            +L  L L  N +Q       +  S+++  +      +  +    I +  T++ L++++N
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN 134

Query: 149 SLSGTIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLT----TLNFNGNELVGS 202
            +  +       FS   +L  LDL  N+            + +     +L+ + N +   
Sbjct: 135 LIQ-SFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NF 191

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245
           +         L+ L L  N++K         L  LQ + L +N
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 52/226 (23%), Positives = 81/226 (35%), Gaps = 59/226 (26%)

Query: 202 SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY-- 259
            +P +L    + + LDL  N ++    +   +  ELQVL L   +    ++  E   Y  
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQS 74

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
            S L  L L+ N    SL    F  + ++  +   A E                      
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV--AVETNLA------------------ 113

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQN-ILSGNIPSSLGDLTDL 378
                          L               L +L+ LN++ N I S  +P    +LT+L
Sbjct: 114 --------------SLENFPIGH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 379 ESLDLSSNVLDGVIPRE----LTRLTFLAV-LNLSRNKLEGRIPEG 419
           E LDLSSN +   I       L ++  L + L+LS N +   I  G
Sbjct: 152 EHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 43/185 (23%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             ++  +  ++                 I +   +     L       + L LS+N +S 
Sbjct: 41  SGVQNFNGDNS----------------NIQSLAGMQFFTNL-------KELHLSHNQIS- 76

Query: 153 TIPECIGNFS--KSLRVLDLRKNRFHGTIPETFP-KGNNLTTLNFNGNELVGSVPRSLLN 209
                +        L  L + +NR    +          L+ L  + NEL      SL++
Sbjct: 77  ----DLSPLKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDNNEL--RDTDSLIH 126

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
             NL++L + NNK+K      LG L +L+VL L  N+    + +        K+  +DL+
Sbjct: 127 LKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE----ITNTGGLTRLKKVNWIDLT 180

Query: 270 NNNFT 274
                
Sbjct: 181 GQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 39/223 (17%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
           N    N     +  +   S    + +Q  +  N+ ++      +     L+ L L  N+ 
Sbjct: 20  NAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ- 74

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
              + D       +KL  L ++ N    +L  +    +  +       D N+        
Sbjct: 75  ---ISDLSPLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLF-----LDNNE-------- 117

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
                  +     +  +K L     + +  N     I  L G L  L +L+L  N ++ N
Sbjct: 118 -------LRDTDSLIHLKNLE---ILSIRNNKLK-SIVML-GFLSKLEVLDLHGNEIT-N 164

Query: 368 IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN 410
               L  L  +  +DL+       +   +     L + N  ++
Sbjct: 165 T-GGLTRLKKVNWIDLTGQK---CVNEPVKYQPELYITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 15/155 (9%)

Query: 120 LISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTI 179
            I     I ++       +     +L   S+  T        S  ++  +   +      
Sbjct: 2   SIQRPTPINQVFPD-PGLANAVKQNLGKQSV--TDLVSQKELSG-VQNFNGDNSNI--QS 55

Query: 180 PETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQV 239
                   NL  L+ + N++  S    L +   L+ L +  N++K+        L     
Sbjct: 56  LAGMQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSR--- 110

Query: 240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274
           L L +N+    LRD ++  +   L IL + NN   
Sbjct: 111 LFLDNNE----LRDTDSLIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 35/156 (22%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             LE L +  N                       +  +  +   ++ +  L L NN L  
Sbjct: 85  TKLEELSVNRNR----------------------LKNLNGI--PSACLSRLFLDNNELR- 119

Query: 153 TIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
                  +    K+L +L +R N+            + L  L+ +GNE+  +    L   
Sbjct: 120 ----DTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEI--TNTGGLTRL 171

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
             +  +DL   K  +    +   L     +     +
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFS--KSLRVLDLRKNR 174
           +V L      I ++   +      + L LS N++     E I + S  ++LR+L L +N 
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNL 81

Query: 175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGT 233
               I       + L  L  + N++  +    +    NL+VL + NNK+ +      L  
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 234 LRELQVLILRSNKFYGHLRDYEAD--------YYFSKLRILD 267
           L +L+ L+L  N  Y   ++  A              L+ LD
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 32/145 (22%)

Query: 93  KNLEYLDLRSNL------LQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLS 146
           K  ++L L +N       L G       N+R+  +  N  I +I  L     T+E L +S
Sbjct: 48  KACKHLALSTNNIEKISSLSGME-----NLRILSLGRNL-IKKIENLDAVADTLEELWIS 101

Query: 147 NNSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGN--NLTTLNFNGNELVGS 202
            N +       +       +LRVL +  N+      E         L  L   GN L   
Sbjct: 102 YNQI-----ASLSGIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 203 VPRS----------LLNCANLQVLD 217
              +          +    NL+ LD
Sbjct: 156 YKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN 386
           +     + L +N    +I  L     +L  L +S N ++ ++ S +  L +L  L +S+N
Sbjct: 69  MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNN 125

Query: 387 VLDGVIP-RELTRLTFLAVLNLSRNKLEGRIPEGNQFA 423
            +       +L  L  L  L L+ N L     E N  +
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 316 IKRQEVKLMKILTIFTTIDLSKNSFHG--EIPELMGKLHSLRLLNLSQNILSGNIPSSLG 373
           I+  E +   + T    ++L         ++   +  L + + L LS N +   I SSL 
Sbjct: 11  IRIFEERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLS 67

Query: 374 DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
            + +L  L L  N++   I         L  L +S N++ 
Sbjct: 68  GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 26/141 (18%)

Query: 132 RLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTT 191
           R+     ++   +     L G IP  I     +L  L                       
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPP-IEKMDATLSTL------------------KACKH 52

Query: 192 LNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL 251
           L  + N +      SL    NL++L LG N +K    +       L+ L +  N+    +
Sbjct: 53  LALSTNNI--EKISSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQ----I 105

Query: 252 RDYEADYYFSKLRILDLSNNN 272
                      LR+L +SNN 
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNK 126

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 58/263 (22%), Positives = 83/263 (31%), Gaps = 66/263 (25%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           CN +   + D S+  L+  IP  I       + LDL+ N+      + F +   L  L  
Sbjct: 14  CNNNKNSV-DCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL 68

Query: 195 NGNELVGSVPRSLLNC-ANLQVLDLGNNKMK----DTFPHWLGTLRELQVLILRSNKFYG 249
           N N+L  ++P  +     NL+ L + +NK++      F      L  L  L L  N+   
Sbjct: 69  NDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ----LVNLAELRLDRNQ--- 120

Query: 250 HLRDYEADYYF---SKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET 306
            L+       F   +KL  L L  N    SLP   F                        
Sbjct: 121 -LKSLPPR-VFDSLTKLTYLSLGYNELQ-SLPKGVFDK---------------------- 155

Query: 307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG 366
                               LT    + L  N           KL  L+ L L  N L  
Sbjct: 156 --------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 367 NIPSSLGDLTDLESLDLSSNVLD 389
               +   L  L+ L L  N  D
Sbjct: 196 VPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 35/203 (17%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
           + + LDL+SN L               + +  F           + + +L L++N L  T
Sbjct: 38  DTKKLDLQSNKLSS-------------LPSKAFHR--------LTKLRLLYLNDNKLQ-T 75

Query: 154 IPECIGNFSK--SLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNGNELVGSVPRSLL-N 209
           +P   G F +  +L  L +  N+    +P   F +  NL  L  + N+L  S+P  +  +
Sbjct: 76  LPA--GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDS 131

Query: 210 CANLQVLDLGNNKMKDTFPHWL-GTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDL 268
              L  L LG N+++ + P  +   L  L+ L L +N+         A    ++L+ L L
Sbjct: 132 LTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKL 188

Query: 269 SNNNFTGSLPAMFFKNMKAMTDI 291
            NN     +P   F +++ +  +
Sbjct: 189 DNNQLK-RVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 55/237 (23%), Positives = 91/237 (38%), Gaps = 57/237 (24%)

Query: 187 NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK 246
           NN  +++ +  +L  ++P ++   A+ + LDL +NK+          L +L++L L  NK
Sbjct: 16  NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 247 FYGHLRDYEADYY--FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG 304
               L+   A  +     L  L +++N    +LP   F                      
Sbjct: 73  ----LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQ-------------------- 107

Query: 305 ETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNI 363
                                 L     + L +N     +P  +   L  L  L+L  N 
Sbjct: 108 ----------------------LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 364 LSGNIPSSLGD-LTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           L  ++P  + D LT L+ L L +N L  V      +LT L  L L  N+L+ R+PEG
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEG 199

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 34/183 (18%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
            L  L L  N LQ              +    F             +E L +++N L   
Sbjct: 62  KLRLLYLNDNKLQT-------------LPAGIFKE--------LKNLETLWVTDNKLQ-A 99

Query: 154 IPECIGNFSKSLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNGNELVGSVP----RSLL 208
           +P  + +   +L  L L +N+   ++P   F     LT L+   NEL  S+P      L 
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL- 156

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDL 268
              +L+ L L NN++K         L EL+ L L +N+         A     KL++L L
Sbjct: 157 --TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG--AFDSLEKLKMLQL 212

Query: 269 SNN 271
             N
Sbjct: 213 QEN 215

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 44/337 (13%), Positives = 94/337 (27%), Gaps = 101/337 (29%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             +  LDL  N L   +                 + +        +++  L+LS NSL  
Sbjct: 22  HGVTSLDLSLNNL-YSIST-------------VELIQA--FANTPASVTSLNLSGNSLGF 65

Query: 153 T----IPECIGNFSKSLRVLDLRKNRFHGT----IPETFPKGN-NLTTLNFNGNEL---- 199
                + + +     ++  L+L  N         + +T       +T L+   N+     
Sbjct: 66  KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125

Query: 200 VGSVPRSLLNC-ANLQVLDLGNNKMKDT--------FPHWLGTLRELQVLILRSNKFYGH 250
                ++  N  A++  L+L  N +                  +  L    LR N    +
Sbjct: 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN---LRGN----N 178

Query: 251 LRDYEADY-------YFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYM 303
           L                + +  LDLS N              K+  ++        +   
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGL----------KSYAELAYIFSSIPNH-- 226

Query: 304 GETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNL 359
                                       +++L  N  HG     +  L   L  L+ + L
Sbjct: 227 --------------------------VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 360 SQNILSG-------NIPSSLGDLTDLESLDLSSNVLD 389
             +I+          + ++  ++  +  +D +   + 
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 84/325 (25%)

Query: 130 IPRLICNTSTIEILDLSNNSLSGT----IPECIGNFSKSLRVLDLRKNRFHGT----IPE 181
           +         +  LDLS N+L       + +   N   S+  L+L  N         + +
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 182 TFPKGN-NLTTLNFNGNEL----VGSVPRSLLNC-ANLQVLDLGNNKMKDTFPHWLGTL- 234
                  N+T+LN +GN L       + ++L      + VLDLG N              
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 235 ----RELQVLILRSNKFYGHLRDYEADY-------YFSKLRILDLSNNNFTGSLPAMFFK 283
                 +  L LR N     L    +D          + +  L+L  NN           
Sbjct: 134 SNLPASITSLNLRGN----DLGIKSSDELIQILAAIPANVNSLNLRGNNLAS-------- 181

Query: 284 NMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE 343
             K   ++ +                             L  I    T++DLS N    +
Sbjct: 182 --KNCAELAKF----------------------------LASIPASVTSLDLSANLLGLK 211

Query: 344 -----IPELMGKLHSLRLLNLSQNILSG----NIPSSLGDLTDLESLDLSSNVLDGVIPR 394
                        + +  LNL  N L G    N+      L  L+++ L  +++  +   
Sbjct: 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271

Query: 395 E-------LTRLTFLAVLNLSRNKL 412
           +          +  + +++ +  ++
Sbjct: 272 QCKALGAAFPNIQKIILVDKNGKEI 296

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 16/160 (10%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           C+ + +   D     L+  IP    N  +++  + L +N      P  F     L  ++ 
Sbjct: 11  CSNNIV---DCRGKGLT-EIPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDL 63

Query: 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY 254
           + N++    P +     +L  L L  NK+ +        L  LQ+L+L +NK    +   
Sbjct: 64  SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK----INCL 119

Query: 255 EADYYFSK---LRILDLSNNNFTGSLPAMFFKNMKAMTDI 291
             D  F     L +L L +N    ++    F  ++A+  +
Sbjct: 120 RVD-AFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
           T I L +N+     P        LR ++LS N +S   P +   L  L SL L  N +  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           +       L  L +L L+ NK+   +   
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 327 LTIFTTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLS 384
                 IDLS N    E+       L SL  L L  N ++  +P SL + L  L+ L L+
Sbjct: 55  YKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           +N ++ +       L  L +L+L  NKL+  I +G
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKG 146

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 21/148 (14%)

Query: 264 RILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
             + L  N     +P   F   K +  I      N+                I       
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRI--DLSNNQ----------------ISELAPDA 75

Query: 324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLD 382
            + L    ++ L  N        L   L SL+LL L+ N ++  +       L +L  L 
Sbjct: 76  FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

Query: 383 LSSNVLDGVIPRELTRLTFLAVLNLSRN 410
           L  N L  +     + L  +  ++L++N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           K L  +DL +N +   +         F    +               +  L L  N ++ 
Sbjct: 56  KKLRRIDLSNNQISE-LAP-----DAFQGLRS---------------LNSLVLYGNKIT- 93

Query: 153 TIPECIGNFSK--SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-N 209
            +P+    F    SL++L L  N+ +    + F   +NL  L+   N+L  ++ +     
Sbjct: 94  ELPK--SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSP 150

Query: 210 CANLQVLDLGNN 221
              +Q + L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 31/156 (19%)

Query: 138 STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFNG 196
                L L+NN  +      I      LR ++   N+    I E  F   + +  +    
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 197 NELVGSVPRSLL-NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE 255
           N L  +V   +     +L+ L L +N++     +   +   L                  
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGN--DSFIGL------------------ 128

Query: 256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDI 291
                S +R+L L +N  T ++    F  + +++ +
Sbjct: 129 -----SSVRLLSLYDNQIT-TVAPGAFDTLHSLSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 331 TTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD 389
             + L+ N F       +  KL  LR +N S N ++     +    + +  + L+SN L+
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 390 GVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
            V  +    L  L  L L  N++   +   
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGND 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 327 LTIFTTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLS 384
           L     I+ S N    +I E        +  + L+ N L  N+   +   L  L++L L 
Sbjct: 56  LPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           SN +  V       L+ + +L+L  N++   +  G
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 35/149 (23%), Positives = 51/149 (34%), Gaps = 22/149 (14%)

Query: 264 RILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL 323
             L L+NN FT       FK +  +  I      NK                I   E   
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKIN--FSNNK----------------ITDIEEGA 76

Query: 324 MKILTIFTTIDLSKNSFHGEIPELM-GKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESL 381
            +  +    I L+ N     +   M   L SL+ L L  N ++  + +     L+ +  L
Sbjct: 77  FEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLL 134

Query: 382 DLSSNVLDGVIPRELTRLTFLAVLNLSRN 410
            L  N +  V P     L  L+ LNL  N
Sbjct: 135 SLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 30/152 (19%), Positives = 43/152 (28%), Gaps = 30/152 (19%)

Query: 123 NNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPET 182
             + I +  +   N      LDL    +   + E +G        +D   N       + 
Sbjct: 5   TAELIEQAAQYT-NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEI--RKLDG 59

Query: 183 FPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLIL 242
           FP    L TL  N N +            +L  L L NN + +     LG L  L  L  
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-----LGDLDPLASL-- 112

Query: 243 RSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274
                               L  L +  N  T
Sbjct: 113 ------------------KSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 32/133 (24%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
                LDLR                         I  I  L       + +D S+N +  
Sbjct: 19  VRDRELDLRGYK----------------------IPVIENLGATLDQFDAIDFSDNEIR- 55

Query: 153 TIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL--VGSVPRSLL 208
                +  F   + L+ L +  NR             +LT L    N L  +G +   L 
Sbjct: 56  ----KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA 110

Query: 209 NCANLQVLDLGNN 221
           +  +L  L +  N
Sbjct: 111 SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS--GNIPSSLGDLTDLESLDLS 384
                 +DL        I  L   L     ++ S N +      P     L  L++L ++
Sbjct: 18  AVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVN 72

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
           +N +  +       L  L  L L+ N L 
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLV 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 136 NTSTIEILDLSNNSLS-GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
             S ++ L L N+  + G +      F + L  L         T     PK N L  L  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGL--TSIANLPKLNKLKKLEL 71

Query: 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKD-TFPHWLGTLRELQVLILRSN 245
           + N + G +      C NL  L+L  NK+KD +    L  L  L+ L L + 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 127 IGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFP 184
            G++  L      +E L   N  L+      I N      L+ L+L  NR  G +     
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRVSGGLEVLAE 85

Query: 185 KGNNLTTLNFNGNELVG-SVPRSLLNCANLQVLDLGNN---KMKDTFPHWLGTLRELQVL 240
           K  NLT LN +GN++   S    L    NL+ LDL N     + D   +    L +L  L
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS--GNIPSSLGDLTDLESLDLSSNVLD 389
            +D S+++  G++  L  +   L  L+     L+   N+P     L  L+ L+LS N + 
Sbjct: 23  VLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLELSDNRVS 77

Query: 390 GVIPRELTRLTFLAVLNLSRNKLE 413
           G +     +   L  LNLS NK++
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 136 NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFN 195
             + +  L L N   +    E +     +L  L L             PK   L  L  +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELS 79

Query: 196 GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLRDY 254
            N + G +        NL  L+L  NK+KD      L  L  L+ L L + +   +L DY
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDY 138

Query: 255 EAD--YYFSKLRILDLSNN 271
                    +L  LD  + 
Sbjct: 139 RESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 127 IGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFP 184
            G+I  L      +E L L N  L       + N      L+ L+L +NR  G +     
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 185 KGNNLTTLNFNGNEL--VGSVPRSLLNCANLQVLDLGNN---KMKDTFPHWLGTLRELQV 239
           K  NLT LN +GN+L  + ++   L     L+ LDL N     + D        L +L  
Sbjct: 93  KLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151

Query: 240 L 240
           L
Sbjct: 152 L 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV 391
            +D  K++  G+I  L  +  +L  L+L    L  ++ S+L  L  L+ L+LS N + G 
Sbjct: 30  VLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGG 86

Query: 392 IPRELTRLTFLAVLNLSRNKLE 413
           +     +L  L  LNLS NKL+
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 17/161 (10%)

Query: 137 TSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE-TFPKGNNLTTLNFN 195
             T E LDL +  L+ T+ +        L  L+L  N+   T+    F     L TL   
Sbjct: 35  ADT-EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLA 91

Query: 196 GNELVGSVPRSLLNC-ANLQVLDLGNNKMKDTFPHWL-GTLRELQVLILRSNKFYGHLRD 253
            N+L  S+P  + +    L  L LG N++K + P  +   L +L+ L L +N+    L+ 
Sbjct: 92  NNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ----LQS 145

Query: 254 YEADYYFSKLR---ILDLSNNNFTGSLPAMFFKNMKAMTDI 291
             A   F KL     L LS N    S+P   F  +  +  I
Sbjct: 146 IPAGA-FDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLSS 385
           LT  T ++L  N        +   L  L  L L+ N L+ ++P  + D LT L+ L L  
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           N L  +      RLT L  L L+ N+L+  IP G
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAG 149

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 22/155 (14%)

Query: 266 LDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK 325
           LDL +     +L    F+ +  +T +    D N+                ++     +  
Sbjct: 40  LDLQSTGLA-TLSDATFRGLTKLTWLN--LDYNQ----------------LQTLSAGVFD 80

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLS 384
            LT   T+ L+ N        +   L  L  L L  N L   +PS + D LT L+ L L+
Sbjct: 81  DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLN 139

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           +N L  +      +LT L  L+LS N+L+  +P G
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 129 EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFS--KSLRVLDLRKNRFHGTIPETFPKG 186
           +    +     +  L + N      +     +      LR L + K+      P+ F   
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 187 NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMK-DTFPHWL 231
             L+ LN + N L  S+    +   +LQ L L  N +       WL
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 6/104 (5%)

Query: 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR-SLLNCANLQVLDLGNNKMKDTFPHWL 231
                      P   NLT L     + +  +    L     L+ L +  + ++   P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 232 GTLRELQVLILRSNKFYGHLRDYEADYYFS-KLRILDLSNNNFT 274
                L  L L  N     L            L+ L LS N   
Sbjct: 77  HFTPRLSRLNLSFNA----LESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 343 EIPELMGKLHSLRLLNLSQNILSGNIPS-SLGDLTDLESLDLSSNVLDGVIPRELTRLTF 401
           +    +    +L  L +       ++    L  L +L +L +  + L  V P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 402 LAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSN 447
           L+ LNLS N LE  +       T    S    L L G PL  +C+ 
Sbjct: 82  LSRLNLSFNALE-SLSWK----TVQGLSL-QELVLSGNPLHCSCAL 121

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 29/207 (14%)

Query: 96  EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP 155
              +L+   +   V     N    +I+NN  I  +  +    +    L L  N L     
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-RYLALGGNKLHD--- 77

Query: 156 ECIGNFSK--SLRVLDLRKNRFHGTIPET-FPKGNNLTTLNFNGNELVGSVPRSLLNC-A 211
             I    +  +L  L L  N+   ++P   F K  NL  L    N+L  S+P  + +   
Sbjct: 78  --ISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLT 133

Query: 212 NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF-------YGHLRDYEADYYFSKLR 264
           NL  L+L +N+++         L  L  L L  N+        +  L         ++L+
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL---------TQLK 184

Query: 265 ILDLSNNNFTGSLPAMFFKNMKAMTDI 291
            L L  N    S+P   F  + ++  I
Sbjct: 185 DLRLYQNQLK-SVPDGVFDRLTSLQYI 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 51/233 (21%), Positives = 79/233 (33%), Gaps = 58/233 (24%)

Query: 190 TTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT--FPHWLGTLRELQVLILRSNKF 247
              N     +      +     ++  +   N+ +K      +    L  ++ L L  NK 
Sbjct: 22  IKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNK- 74

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY 307
              L D  A    + L  L L+ N    SLP   F                         
Sbjct: 75  ---LHDISALKELTNLTYLILTGNQLQ-SLPNGVFDK----------------------- 107

Query: 308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGN 367
                              LT    + L +N        +  KL +L  LNL+ N L  +
Sbjct: 108 -------------------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-S 147

Query: 368 IPSSLGD-LTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           +P  + D LT+L  LDLS N L  +      +LT L  L L +N+L+  +P+G
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDG 199

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 67/497 (13%), Positives = 136/497 (27%), Gaps = 129/497 (25%)

Query: 3   KRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVYVLLFLELLAGSTCVVHGLQSH 62
           K V +     L     E  +I+             S    L +  L      V   ++  
Sbjct: 36  KDVQDMPKSIL--SKEEIDHII-------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 63  PRNTLKDY---ASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSN---- 115
            R    +Y    S  + E    P +            Y++ R  L          N    
Sbjct: 87  LR---INYKFLMSPIKTEQRQ-PSM--------MTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 116 -----MRVFL--ISNNKFI------GEIPRLICNTSTIEILDLSNNSLSGTIPECI---- 158
                +R  L  +   K +      G         + + +    +  +   +   I    
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLG------SGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 159 -GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSV---------PRSLL 208
             N +    VL++ +   +   P    + ++ + +    + +   +            LL
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 209 NCANLQVLD-LGNNKMKDTFPHW---LGTLRELQVLILRSNKFYGHLR---------DYE 255
                 VL  + N K  + F      L T R  QV    S     H+            E
Sbjct: 249 ------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 256 ADYYFSK---LRILDLSNNNFTGSLP---AMF-------------FK--NMKAMTDIGEA 294
                 K    R  DL     T + P   ++              +K  N   +T I E+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 295 ADENKSKYMGETYYEDSVTLIIKRQEVKL-MKILTIFTTIDLSKNSFHGEIPELMGKLHS 353
           +            ++    L +      +   +L++     +  +    ++  ++ KLH 
Sbjct: 362 SLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSL-----IWFDVIKSDVMVVVNKLHK 413

Query: 354 LRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE 413
             L+       +     S+  +     L+L   + +      L R + +   N+ +    
Sbjct: 414 YSLVEKQPKEST----ISIPSI----YLELKVKLEN---EYALHR-SIVDHYNIPKTF-- 459

Query: 414 GRIPEGNQFATFSSDSY 430
               + +       D Y
Sbjct: 460 ----DSDDLIPPYLDQY 472

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 48/324 (14%), Positives = 93/324 (28%), Gaps = 51/324 (15%)

Query: 94  NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT 153
            +  ++L+        P  +    V           I  +  + + +E + L    ++  
Sbjct: 67  KVRSVELKG------KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120

Query: 154 IPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL 213
             E I    K+ +VL L                   +T           +      C NL
Sbjct: 121 CLELIAKSFKNFKVLVLSSCE-------------GFSTD---------GLAAIAATCRNL 158

Query: 214 QVLDLGNNKMKDTFPHWLGTLRE----LQVLILRSNKFYGHLRD---YEADYYFSKLRIL 266
           + LDL  + + D   HWL    +    L  L +        +              L+ L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKSL 216

Query: 267 DLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKI 326
            L+       L     +    + ++          Y  E   +    L +     K ++ 
Sbjct: 217 KLNRAVPLEKLAT-LLQRAPQLEEL------GTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQ-NILSGNIPSSLGDLTDLESLDLSS 385
           L+ F     +       +P +      L  LNLS   + S ++   L     L+ L +  
Sbjct: 270 LSGFWDAVPA------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323

Query: 386 NVLDGVIPRELTRLTFLAVLNLSR 409
            + D  +    +    L  L +  
Sbjct: 324 YIEDAGLEVLASTCKDLRELRVFP 347

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLSSNVLD 389
           T + L  N F   +P+ +     L L++LS N +S  + +     +T L +L LS N L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 390 GVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
            + PR    L  L +L+L  N +   +PEG
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPEG 120

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)

Query: 109 VPA--PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSK--S 164
           +P   P     ++L  N      +P+ + N   + ++DLSNN +S T+     +FS    
Sbjct: 25  LPKGIPRDVTELYLDGNQ--FTLVPKELSNYKHLTLIDLSNNRIS-TLSN--QSFSNMTQ 79

Query: 165 LRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-NCANLQVLDLGNN 221
           L  L L  NR     P TF    +L  L+ +GN++   VP     + + L  L +G N
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 20/126 (15%)

Query: 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLG 232
           N+    +P+  P+  ++T L  +GN+    VP+ L N  +L ++DL NN++         
Sbjct: 19  NKGLKVLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 233 TLRELQVLILRSNKF-------YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNM 285
            + +L  LIL  N+        +  L+          LR+L L  N+ +  +P   F ++
Sbjct: 76  NMTQLLTLILSYNRLRCIPPRTFDGLK---------SLRLLSLHGNDIS-VVPEGAFNDL 125

Query: 286 KAMTDI 291
            A++ +
Sbjct: 126 SALSHL 131

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLS 384
           I T    + L  N      P +   L +L+ L L  N L   +P  + D LT L  LDL 
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           +N L  +      RL  L  L +  NKL   +P G
Sbjct: 97  TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 37/134 (27%), Positives = 50/134 (37%), Gaps = 20/134 (14%)

Query: 166 RVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL----VGSVPRSLLNCANLQVLDLGNN 221
           ++L L  N+     P  F    NL  L    N+L    VG V  SL     L VLDLG N
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFDSL---TQLTVLDLGTN 98

Query: 222 KMKDTFPHWLGTLRELQVLILRSNKF----YGHLRDYEADYYFSKLRILDLSNNNFTGSL 277
           ++          L  L+ L +  NK      G  R        + L  L L  N    S+
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIER-------LTHLTHLALDQNQLK-SI 150

Query: 278 PAMFFKNMKAMTDI 291
           P   F  + ++T  
Sbjct: 151 PHGAFDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLSS 385
           L     + L  N        +   L  L +L+L  N L+  +PS++ D L  L+ L +  
Sbjct: 63  LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCC 121

Query: 386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           N L   +PR + RLT L  L L +N+L+  IP G
Sbjct: 122 NKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHG 153

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 46/356 (12%), Positives = 90/356 (25%), Gaps = 114/356 (32%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            +L  L+L    +  PV                 +  +  L      ++ ++L++  L  
Sbjct: 72  SSLRQLNLAGVRM-TPVKC-------------TVVAAV--LGSGRHALDEVNLASCQLDP 115

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGT----IPETFPKGNN--LTTLNFNGNEL----VGS 202
                +       R L L+ N         + +     +   +TTL  + N L    V  
Sbjct: 116 AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL-LHDQCQITTLRLSNNPLTAAGVAV 174

Query: 203 VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK 262
           +   L    ++  L L +  + D     L          L  N                +
Sbjct: 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-------LDRN---------------RQ 212

Query: 263 LRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK 322
           L+ L+++ N    +          A   +  AA E+ S                      
Sbjct: 213 LQELNVAYNGAGDT----------AALALARAAREHPS---------------------- 240

Query: 323 LMKILTIFTTIDLSKNSFHGE----IPELMGKLHS---LRLLNLSQNILSGNIPSSLGDL 375
                     + L  N    E    + +L G       + +       +S      L ++
Sbjct: 241 -------LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV 293

Query: 376 ---------------TDLESLDLSSNVLDGVIPRELTRL----TFLAVLNLSRNKL 412
                           +L   DL  +    + P    +L      +  L       
Sbjct: 294 QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLS 384
           I    T +DL  NS       +  +L SL  L L  N L  ++P+ + + LT L  L+LS
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
           +N L  +      +LT L  L L+ N+L+  +P+G
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDG 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 26/165 (15%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           C+ +T+   +  +   + ++P  I         LDL  N         F +  +LT L  
Sbjct: 7   CSGTTV---ECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYL 59

Query: 195 NGNELVGSVPRSLLNC-ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF------ 247
            GN+L  S+P  + N   +L  L+L  N+++         L +L+ L L +N+       
Sbjct: 60  GGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118

Query: 248 -YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDI 291
            +  L         ++L+ L L  N    S+P   F  + ++  I
Sbjct: 119 VFDKL---------TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYI 153

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 137 TSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG 196
             T   L L++N L     + +      L  L+L++N+  G  P  F   +++  L    
Sbjct: 29  LHT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 197 NELVGSVPRSLLN-CANLQVLDLGNNKMKDTFPHWLG---TLRELQVLILRSN 245
           N++   +   +      L+ L+L +N++        G    L  L  L L SN
Sbjct: 88  NKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 331 TTIDLSKNSFHGEIPE-LMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLSSNVL 388
           T + L+ N       + L G+L  L  L L +N L+  I  +  +  + ++ L L  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 389 DGVIPRELTRLTFLAVLNLSRNKLEGRIPEG 419
             +  +    L  L  LNL  N++   +  G
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQIS-CVMPG 120

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 26/208 (12%), Positives = 64/208 (30%), Gaps = 35/208 (16%)

Query: 126 FIGEIPRLICNTSTIEILDLS-----------NNSLSGTIPECIGNFSKSLRVLDLRKNR 174
           F G+I       S IE +DLS                            +L+ L++    
Sbjct: 145 FWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGG 204

Query: 175 FHGTIPETFPKGN--NLTTL-------NFNGNELVGSVPRSLLN--CANLQVLDLGNNKM 223
              ++ E     +  NL  L       ++  +  +             NL+ L + + + 
Sbjct: 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264

Query: 224 KDTFPHWLGT---LRELQVLILRSNKFYGHLRDY------EADYYFSKLRILDLSNNNFT 274
           ++           L +L+ + + +      L D       +       L+ +++  N  +
Sbjct: 265 QNVVVEMFLESDILPQLETMDISAGV----LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Query: 275 GSLPAMFFKNMKAMTDIGEAADENKSKY 302
             +     K++    D+ ++ + +    
Sbjct: 321 DEMKKELQKSLPMKIDVSDSQEYDDDYS 348

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 17/144 (11%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 261 SKLRILDLSNNNFTGS-LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
             L+ L++ +     S +  +   ++  +  +          Y  +        L  K +
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKL--VLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGK---LHSLRLLNLSQNILSGN----IPSSL 372
              L         + +        + E+  +   L  L  +++S  +L+      +   +
Sbjct: 251 FPNL-------KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303

Query: 373 GDLTDLESLDLSSNVLDGVIPREL 396
             +  L+ +++  N L   + +EL
Sbjct: 304 DKIKHLKFINMKYNYLSDEMKKEL 327

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 36/170 (21%), Positives = 54/170 (31%), Gaps = 20/170 (11%)

Query: 108 PVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRV 167
               P + +        + +  I     + S  + LDL          +          V
Sbjct: 98  SSAPPHTILNELKPEQVEQLKLIMSKRYDGSQ-QALDLKGLRS-----DPDLVAQNIDVV 151

Query: 168 LDLRKNRFHG--TIPETFPKGNNLTTLNFNGNELVGSVPRSLL--NCANLQVLDLGNNKM 223
           L+ R         I E  P    L +LN + N L      S +     NL++L+L  N++
Sbjct: 152 LNRRSCMAATLRIIEENIP---ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208

Query: 224 KDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADY------YFSKLRILD 267
           K           +L+ L L  N      RD    Y       F KL  LD
Sbjct: 209 KSERELDKIKGLKLEELWLDGNSLCDTFRDQS-TYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	523
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.98
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.12
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.93
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.97
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	91.47
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	86.25
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	80.1

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-46  Score=405.86  Aligned_cols=355  Identities=32%  Similarity=0.521  Sum_probs=239.8

Q ss_pred             CCCCCccEEEccCCCCccCCCCC---CC-CCcEEEccCCcCCCcCchhhhC--CCCcCEEEccCCcCCccChhhHhhccc
Q 009858           90 LPWKNLEYLDLRSNLLQGPVPAP---SS-NMRVFLISNNKFIGEIPRLICN--TSTIEILDLSNNSLSGTIPECIGNFSK  163 (523)
Q Consensus        90 ~~~~~L~~L~L~~n~l~~~~~~~---~~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~  163 (523)
                      ..+++|++|++++|.+++.+|..   ++ +|++|++++|.+++..|..+..  +++|++|++++|.+++.+|..+..+. 
T Consensus       340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-  418 (768)
T 3rgz_A          340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-  418 (768)
T ss_dssp             TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-
T ss_pred             hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-
Confidence            34455555555555555444443   22 5555555555554444444443  45555566666655555666666555 


Q ss_pred             CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858          164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR  243 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  243 (523)
                      +|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            56666666666665666666666666666666666666666666666666666666666665666666666666666666


Q ss_pred             cccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcccc-----------c---
Q 009858          244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYY-----------E---  309 (523)
Q Consensus       244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~-----------~---  309 (523)
                      +|.+.+..|.++  ..+++|++|++++|.+.+.+|.. +..++.|+.++++.+...... +...+           .   
T Consensus       499 ~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~i-p~~~~~~~~~~~~~~~~~~~  574 (768)
T 3rgz_A          499 NNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTI-PAAMFKQSGKIAANFIAGKR  574 (768)
T ss_dssp             SSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBC-CGGGGTTTTCBCCSTTCSCE
T ss_pred             CCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcC-ChHHhcccchhhhhcccccc
Confidence            666665555554  44566666666666666555543 455566666665554322100 00000           0   


Q ss_pred             ---------------------------------------cceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858          310 ---------------------------------------DSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK  350 (523)
Q Consensus       310 ---------------------------------------~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  350 (523)
                                                             ..............+..++.|+.|+|++|.++|.+|..++.
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  654 (768)
T 3rgz_A          575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS  654 (768)
T ss_dssp             EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence                                                   00000011111123344688999999999999999999999


Q ss_pred             cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCcc
Q 009858          351 LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSY  430 (523)
Q Consensus       351 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  430 (523)
                      +++|+.|+|++|++++.+|..|+.+++|+.|||++|++++.+|..+.++++|++|++++|+++|.+|...+|.++...+|
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~  734 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF  734 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred             cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCC
Q 009858          431 GGNLGLCGFPLSKNCSNDEP  450 (523)
Q Consensus       431 ~gn~~lc~~~~~~~c~~~~~  450 (523)
                      .||+++||.|+. .|.....
T Consensus       735 ~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          735 LNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             CSCTEEESTTSC-CCCSCC-
T ss_pred             cCCchhcCCCCc-CCCCCcc
Confidence            999999999987 8876543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.6e-40  Score=358.17  Aligned_cols=392  Identities=30%  Similarity=0.397  Sum_probs=282.9

Q ss_pred             hHHHHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCC-CCCccEEEccCCCCccCCCCC---
Q 009858           37 SSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLP-WKNLEYLDLRSNLLQGPVPAP---  112 (523)
Q Consensus        37 ~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~---  112 (523)
                      +..+..+.+|++|+++.|.+.+..+..  .+.. ....++..+.+...++..+.. +++|++|++++|.+++.+|..   
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~-L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  316 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS  316 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCCEESCCCC--CCTT-CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred             cHHHhcCCCCCEEECCCCcccCccCcc--ccCC-CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence            344556778999999999876533221  1222 122223333333233333333 489999999999998887765   


Q ss_pred             CCCCcEEEccCCcCCCcCchh-hhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCC--CCCC
Q 009858          113 SSNMRVFLISNNKFIGEIPRL-ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPK--GNNL  189 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~--l~~L  189 (523)
                      +++|++|++++|.+++.+|.. +.++++|++|++++|.+++.+|..+..+.++|++|++++|.+++..|..+..  +++|
T Consensus       317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            889999999999998777765 8899999999999999988899888887546888888888888777776665  6777


Q ss_pred             CEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEecc
Q 009858          190 TTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS  269 (523)
Q Consensus       190 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  269 (523)
                      ++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+  ..+++|++|+++
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~  474 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILD  474 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECC
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEec
Confidence            777777777777777777777777777777777777777777777777777777777776666555  556777777777


Q ss_pred             CccCCCCCchHHHhccccccccccccccccccccCc-cccccceEE-----EecchhHHHHHhhcccccccCCCCccCcC
Q 009858          270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE-TYYEDSVTL-----IIKRQEVKLMKILTIFTTIDLSKNSFHGE  343 (523)
Q Consensus       270 ~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  343 (523)
                      +|.+++.+|.. +.++++|+.++++.+......... ........+     .+.......+..+++|+.|++++|.+++.
T Consensus       475 ~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          475 FNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             SSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred             CCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence            77777666643 566777777777666433211000 000111111     11112233455678888888888888777


Q ss_pred             cchhh----------------------------------------------------------------------cCccc
Q 009858          344 IPELM----------------------------------------------------------------------GKLHS  353 (523)
Q Consensus       344 ~~~~~----------------------------------------------------------------------~~l~~  353 (523)
                      +|..+                                                                      ..+++
T Consensus       554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~  633 (768)
T 3rgz_A          554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS  633 (768)
T ss_dssp             CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred             CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence            66543                                                                      33577


Q ss_pred             CCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCC
Q 009858          354 LRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGG  432 (523)
Q Consensus       354 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~g  432 (523)
                      |+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|||++|+++|.+|.. ..+..+...++.+
T Consensus       634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~  713 (768)
T 3rgz_A          634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN  713 (768)
T ss_dssp             CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred             ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence            999999999999999999999999999999999999999999999999999999999999999974 3455666667777


Q ss_pred             CC
Q 009858          433 NL  434 (523)
Q Consensus       433 n~  434 (523)
                      |.
T Consensus       714 N~  715 (768)
T 3rgz_A          714 NN  715 (768)
T ss_dssp             SE
T ss_pred             Cc
Confidence            74

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-40  Score=359.19  Aligned_cols=358  Identities=19%  Similarity=0.201  Sum_probs=230.5

Q ss_pred             ccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC-----CCCCCcEEEccCCcCCCcCc-hhhhCCCCcCEEEccCCc
Q 009858           76 FEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA-----PSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSNNS  149 (523)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-----~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~  149 (523)
                      +..+.+....+..+..+++|++|+|++|.+++..+.     .+++|++|++++|.+++..+ ..|.++++|++|++++|.
T Consensus        80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            333444445555666677777777777777664432     16777777777777766544 467777777777777777


Q ss_pred             CCccChhhHhhc--ccCCcEEEccCCcccccCCCCCCCC-----------------------------------------
Q 009858          150 LSGTIPECIGNF--SKSLRVLDLRKNRFHGTIPETFPKG-----------------------------------------  186 (523)
Q Consensus       150 l~~~~p~~l~~l--~~~L~~L~L~~n~l~~~~p~~~~~l-----------------------------------------  186 (523)
                      +++..|..+..+  . +|++|++++|.+.+..|..+..+                                         
T Consensus       160 i~~~~~~~l~~l~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l  238 (844)
T 3j0a_A          160 IFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL  238 (844)
T ss_dssp             CCCCCSGGGHHHHHC-SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred             CCeeCHHHcccccCC-ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence            776666666554  2 34444444443333222222211                                         


Q ss_pred             ---------------------------CCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCe
Q 009858          187 ---------------------------NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQV  239 (523)
Q Consensus       187 ---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  239 (523)
                                                 ++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  318 (844)
T 3j0a_A          239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV  318 (844)
T ss_dssp             CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred             ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence                                       35666666666666666667777888888888888887777778888888888


Q ss_pred             EEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccccccccc-Cc--------ccc--
Q 009858          240 LILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYM-GE--------TYY--  308 (523)
Q Consensus       240 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~-~~--------~~~--  308 (523)
                      |++++|.+.+..+..+  ..+++|+.|++++|.+. .++...+.++++|+.|+++.+....... +.        ...  
T Consensus       319 L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~  395 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT  395 (844)
T ss_dssp             EEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCC
T ss_pred             EECCCCCCCccCHHHh--cCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccc
Confidence            8888888877666655  56788888888888886 5555567778888888887765432110 00        000  


Q ss_pred             -----ccceEEE-----ecc-hhHHHHHhhcccccccCCCCccCc------------------------------Ccchh
Q 009858          309 -----EDSVTLI-----IKR-QEVKLMKILTIFTTIDLSKNSFHG------------------------------EIPEL  347 (523)
Q Consensus       309 -----~~~~~~~-----~~~-~~~~~~~~~~~L~~L~Ls~n~l~~------------------------------~~~~~  347 (523)
                           .....+.     +.. .....+..+++|+.|+|++|.+++                              ..+..
T Consensus       396 l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~  475 (844)
T 3j0a_A          396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV  475 (844)
T ss_dssp             CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred             ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence                 0000000     000 011122244555555555555542                              22344


Q ss_pred             hcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccC
Q 009858          348 MGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSS  427 (523)
Q Consensus       348 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  427 (523)
                      +..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..+.  ++|+.|++++|++++..|.  .+..+..
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~  551 (844)
T 3j0a_A          476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSV  551 (844)
T ss_dssp             SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCE
T ss_pred             hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCE
Confidence            66677888888888888877777788888888888888888877666655  7788888888888877775  3567778


Q ss_pred             CccCCCCCCCCCCC
Q 009858          428 DSYGGNLGLCGFPL  441 (523)
Q Consensus       428 ~~~~gn~~lc~~~~  441 (523)
                      ..+.|||+.|+|+.
T Consensus       552 l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          552 LDITHNKFICECEL  565 (844)
T ss_dssp             EEEEEECCCCSSSC
T ss_pred             EEecCCCccccccc
Confidence            88999999997653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-37  Score=313.55  Aligned_cols=325  Identities=19%  Similarity=0.186  Sum_probs=264.3

Q ss_pred             CCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEE
Q 009858           93 KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVL  168 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L  168 (523)
                      +++++|+|++|.+++..+..   +++|++|+|++|.+++..|.+|.++++|++|+|++|.++ .+|. .+..+. +|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS-NLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCT-TCCEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCC-CCCEE
Confidence            68899999999998876654   788999999999998888888999999999999999998 4554 466776 89999


Q ss_pred             EccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858          169 DLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY  248 (523)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  248 (523)
                      ++++|.+++..|..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            99999999888888999999999999999998888888999999999999999998777778889999999999999887


Q ss_pred             CcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhc
Q 009858          249 GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT  328 (523)
Q Consensus       249 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (523)
                      +..+..+  ..+++|+.|++++|...+.+|...+.. .+|+.++++.+...                  ......+..++
T Consensus       190 ~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~------------------~~~~~~~~~l~  248 (477)
T 2id5_A          190 AIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLT------------------AVPYLAVRHLV  248 (477)
T ss_dssp             EECTTCS--CSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCC------------------SCCHHHHTTCT
T ss_pred             EeChhhc--ccCcccceeeCCCCccccccCcccccC-ccccEEECcCCccc------------------ccCHHHhcCcc
Confidence            7666555  668899999999988777777665443 36777777655322                  12223455688


Q ss_pred             ccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858          329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS  408 (523)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  408 (523)
                      +|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            99999999999997777888999999999999999998889999999999999999999998888888999999999999


Q ss_pred             CCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 009858          409 RNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       409 ~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      +|++.+..+....+.......+.++...|..|
T Consensus       329 ~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          329 SNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             SSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             CCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            99998665432222223334566666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-37  Score=327.96  Aligned_cols=395  Identities=20%  Similarity=0.140  Sum_probs=279.6

Q ss_pred             HHHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCC-CCC--CCC
Q 009858           39 FVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPV-PAP--SSN  115 (523)
Q Consensus        39 ~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~~  115 (523)
                      .+..+.+|++|++++|.+.+..+.....+.. ....++..+.+.......+..+++|++|++++|.+++.. |..  +++
T Consensus        76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  154 (606)
T 3t6q_A           76 TFQSQHRLDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK  154 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCSEECTTTTSSCTT-CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred             hccCccccCeeeCCCCcccccChhhhccccc-ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence            3556778899999999877654433222222 222334444455544556777888888888888888743 332  788


Q ss_pred             CcEEEccCCcCCCcCchhhhCCCCcC--EEEccCCcCCccCh--------------------------------------
Q 009858          116 MRVFLISNNKFIGEIPRLICNTSTIE--ILDLSNNSLSGTIP--------------------------------------  155 (523)
Q Consensus       116 L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p--------------------------------------  155 (523)
                      |++|++++|.+++..+..|..+++|+  .|++++|.+++..|                                      
T Consensus       155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~  234 (606)
T 3t6q_A          155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT  234 (606)
T ss_dssp             CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred             cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechh
Confidence            88888888888877777777777777  66666666553332                                      


Q ss_pred             -------------------------------------hhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCC
Q 009858          156 -------------------------------------ECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE  198 (523)
Q Consensus       156 -------------------------------------~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  198 (523)
                                                           ..+..+. +|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus       235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~  312 (606)
T 3t6q_A          235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK  312 (606)
T ss_dssp             CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT-TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred             hccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc-CCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence                                                 2244555 7999999999998 778888999999999999999


Q ss_pred             CCCCCCccccCCCCCcEEECCCCcCCCCchH-hhhcCCCCCeEEeccccccCcC--CCccccccCCCCcEEeccCccCCC
Q 009858          199 LVGSVPRSLLNCANLQVLDLGNNKMKDTFPH-WLGTLRELQVLILRSNKFYGHL--RDYEADYYFSKLRILDLSNNNFTG  275 (523)
Q Consensus       199 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~~  275 (523)
                      +.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..  +..+  ..+++|++|++++|.+.+
T Consensus       313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~  390 (606)
T 3t6q_A          313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLS  390 (606)
T ss_dssp             CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEE
T ss_pred             cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCc
Confidence            9877788888999999999999988755544 4888899999999998887654  3333  668888888888888874


Q ss_pred             CCchHHHhccccccccccccccccccccCc--cccccceEEE-----ecchhHHHHHhhcccccccCCCCccCcC---cc
Q 009858          276 SLPAMFFKNMKAMTDIGEAADENKSKYMGE--TYYEDSVTLI-----IKRQEVKLMKILTIFTTIDLSKNSFHGE---IP  345 (523)
Q Consensus       276 ~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~  345 (523)
                      . +...+..+++|+.++++.+.........  ........+.     +.......+..+++|++|++++|.+++.   .+
T Consensus       391 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  469 (606)
T 3t6q_A          391 L-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT  469 (606)
T ss_dssp             E-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred             C-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence            4 3345777888888888776543221111  0011111111     1122233455678888888888888752   23


Q ss_pred             hhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCc
Q 009858          346 ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFAT  424 (523)
Q Consensus       346 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~  424 (523)
                      ..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+.+++.| .|++++|++++..|.. ..+..
T Consensus       470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~  548 (606)
T 3t6q_A          470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ  548 (606)
T ss_dssp             CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred             hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence            567788888888888888888778888888888888888888888888888888888 8888888888666643 33455


Q ss_pred             ccCCccCCCCCCCCCC
Q 009858          425 FSSDSYGGNLGLCGFP  440 (523)
Q Consensus       425 ~~~~~~~gn~~lc~~~  440 (523)
                      +....+.||+..|.++
T Consensus       549 L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          549 QRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SSEEECTTCCEECSGG
T ss_pred             CCEEeCCCCCccccCC
Confidence            6667777777776554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-36  Score=310.41  Aligned_cols=327  Identities=20%  Similarity=0.247  Sum_probs=168.7

Q ss_pred             hhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC-C---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccC
Q 009858           72 SAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA-P---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN  147 (523)
Q Consensus        72 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  147 (523)
                      ...++..+.+.......+..+++|++|++++|.+.+.++. .   +++|++|++++|.+++..|..|.++++|++|++++
T Consensus        33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  112 (455)
T 3v47_A           33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ  112 (455)
T ss_dssp             CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence            3344444444444445555666666666666666543322 1   56666666666666666666666666666666666


Q ss_pred             CcCCccChhh--HhhcccCCcEEEccCCcccccCCCC-CCCCCCCCEEECcCCCCCCCCCccccCC--CCCcEEECCCCc
Q 009858          148 NSLSGTIPEC--IGNFSKSLRVLDLRKNRFHGTIPET-FPKGNNLTTLNFNGNELVGSVPRSLLNC--ANLQVLDLGNNK  222 (523)
Q Consensus       148 n~l~~~~p~~--l~~l~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~  222 (523)
                      |.+++..|..  +..+. +|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+  .+|+.|++++|.
T Consensus       113 n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~  191 (455)
T 3v47_A          113 CNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT  191 (455)
T ss_dssp             SCCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred             CCCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence            6666544443  55555 5666666666666555554 5666666666666666665555555443  333444444443


Q ss_pred             CCCCchHh--------hhcCCCCCeEEeccccccCcCCCcc-------------------------------------cc
Q 009858          223 MKDTFPHW--------LGTLRELQVLILRSNKFYGHLRDYE-------------------------------------AD  257 (523)
Q Consensus       223 l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~-------------------------------------~~  257 (523)
                      +.+..+..        +..+++|++|++++|.+.+..+..+                                     ..
T Consensus       192 l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  271 (455)
T 3v47_A          192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG  271 (455)
T ss_dssp             CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG
T ss_pred             ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccc
Confidence            33222111        1123445555555554433222211                                     11


Q ss_pred             ccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCC
Q 009858          258 YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSK  337 (523)
Q Consensus       258 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  337 (523)
                      ...++|+.|++++|.+.+..| ..+..+++|+.++++.+.....                  ....+..+++|++|+|++
T Consensus       272 ~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~------------------~~~~~~~l~~L~~L~Ls~  332 (455)
T 3v47_A          272 LEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKI------------------DDNAFWGLTHLLKLNLSQ  332 (455)
T ss_dssp             GTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEE------------------CTTTTTTCTTCCEEECCS
T ss_pred             ccccCceEEEecCccccccch-hhcccCCCCCEEECCCCccccc------------------ChhHhcCcccCCEEECCC
Confidence            122456666666666653333 3345555555555544322110                  011122245555555555


Q ss_pred             CccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCC
Q 009858          338 NSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIP  417 (523)
Q Consensus       338 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  417 (523)
                      |.+++..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|
T Consensus       333 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            55554445555555555555555555555445555555555555555555555444445555555555555555555554


Q ss_pred             C
Q 009858          418 E  418 (523)
Q Consensus       418 ~  418 (523)
                      .
T Consensus       413 ~  413 (455)
T 3v47_A          413 R  413 (455)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.9e-37  Score=324.37  Aligned_cols=192  Identities=18%  Similarity=0.122  Sum_probs=133.8

Q ss_pred             hHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccc
Q 009858          228 PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY  307 (523)
Q Consensus       228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  307 (523)
                      |..+..+++|++|++++|.+.+.. ..+  ..+++|+.|++++|.+.+..|...+..+++|+.++++.+....       
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------  438 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAIIMS-ANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-------  438 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEEEC-CCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-------
T ss_pred             hhhhccCCcccEeECCCCccccch-hhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-------
Confidence            344444444444444444443322 222  3345555555555555544333344555555555555443211       


Q ss_pred             cccceEEEecchhHHHHHhhcccccccCCCCccCc-CcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCC
Q 009858          308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG-EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN  386 (523)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  386 (523)
                                 .....+..+++|++|++++|.+++ .+|..+..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus       439 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          439 -----------DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             -----------CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -----------cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence                       112234557899999999999997 37888999999999999999999988999999999999999999


Q ss_pred             cCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCC-cccCCccCCCCCCCCCCC
Q 009858          387 VLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFA-TFSSDSYGGNLGLCGFPL  441 (523)
Q Consensus       387 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~-~~~~~~~~gn~~lc~~~~  441 (523)
                      ++++..|..+..+++|++|++++|+++ .+|.. ..+. .+....+.+|+..|+++.
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999998999999999999999999999 55654 2333 367777889988887664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.1e-37  Score=325.06  Aligned_cols=331  Identities=17%  Similarity=0.237  Sum_probs=239.4

Q ss_pred             CCCCCCCCccEEEccCCCCccC-----------------CCCC-----CCCCcEEEccCCcCCCcCchhhhCCCCcCEEE
Q 009858           87 NKKLPWKNLEYLDLRSNLLQGP-----------------VPAP-----SSNMRVFLISNNKFIGEIPRLICNTSTIEILD  144 (523)
Q Consensus        87 ~~~~~~~~L~~L~L~~n~l~~~-----------------~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  144 (523)
                      ..+..+++|++|+|++|.+++.                 +|..     +++|++|++++|.+.+.+|..|.++++|++|+
T Consensus       200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            3455688999999999999884                 5543     67899999999998888998899999999999


Q ss_pred             ccCCc-CCc-cChhhHhhc------ccCCcEEEccCCcccccCCC--CCCCCCCCCEEECcCCCCCCCCCccccCCCCCc
Q 009858          145 LSNNS-LSG-TIPECIGNF------SKSLRVLDLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQ  214 (523)
Q Consensus       145 L~~n~-l~~-~~p~~l~~l------~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  214 (523)
                      +++|+ +++ .+|..++.+      . +|++|++++|+++ .+|.  .++.+++|++|++++|.+.+.+| .+..+++|+
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             CcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            99998 887 788888886      5 7999999999888 7787  78888889999999888887777 777777777


Q ss_pred             EEECCCCcCCCCchHhhhcCCC-CCeEEeccccccCcCCCccccccCCCCcEEeccCccCCC------------------
Q 009858          215 VLDLGNNKMKDTFPHWLGTLRE-LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTG------------------  275 (523)
Q Consensus       215 ~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------  275 (523)
                      +|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+....+++|+.|++++|.+.+                  
T Consensus       357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~  434 (636)
T 4eco_A          357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN  434 (636)
T ss_dssp             EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred             EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence            7777777776 66667777777 777777777766 34443322223345555555554444                  


Q ss_pred             ------------CCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcC
Q 009858          276 ------------SLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE  343 (523)
Q Consensus       276 ------------~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  343 (523)
                                  .+|..++..++.|+.++++.+...  .++...+....         .....+++|+.|+|++|.++ .
T Consensus       435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~---------~~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDEN---------ENFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETT---------EECTTGGGCCEEECCSSCCC-B
T ss_pred             CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhcccc---------ccccccCCccEEECcCCcCC-c
Confidence                        444444444555555554444322  11111000000         00112348888999999888 6


Q ss_pred             cchhhc--CcccCCeeeCcCCcccccCCccccCCCCCCEEeC------CCCcCCCcCChhhcCCCCCCeEECCCCcCccc
Q 009858          344 IPELMG--KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDL------SSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR  415 (523)
Q Consensus       344 ~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  415 (523)
                      +|..+.  .+++|++|+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|++++|++ +.
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~  580 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK  580 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred             cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence            777776  88899999999999886 7888888899999988      55778888888888899999999999998 57


Q ss_pred             CCCCCCCCcccCCccCCCCCCC
Q 009858          416 IPEGNQFATFSSDSYGGNLGLC  437 (523)
Q Consensus       416 ~p~~~~~~~~~~~~~~gn~~lc  437 (523)
                      +|.. .+..+..+.+.+|+..|
T Consensus       581 ip~~-~~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          581 VNEK-ITPNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCSC-CCTTCCEEECCSCTTCE
T ss_pred             cCHh-HhCcCCEEECcCCCCcc
Confidence            7765 33667777778887665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.3e-36  Score=306.56  Aligned_cols=324  Identities=20%  Similarity=0.193  Sum_probs=278.9

Q ss_pred             ccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858           95 LEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR  174 (523)
Q Consensus        95 L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~  174 (523)
                      -+.++.+++.++..+....++++.|++++|.+++..+..|.++++|++|+|++|.+++..|..+..+. +|++|+|++|.
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~   91 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNR   91 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCc
Confidence            35788888888876655688999999999999988889999999999999999999977799999998 89999999999


Q ss_pred             ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCc
Q 009858          175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY  254 (523)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  254 (523)
                      ++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            99777778999999999999999999888899999999999999999999888889999999999999999987665444


Q ss_pred             cccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccccc
Q 009858          255 EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTID  334 (523)
Q Consensus       255 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  334 (523)
                      +  ..+++|+.|++++|.+. .++...+..+++|+.++++.+.........                  .....+|+.|+
T Consensus       172 l--~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------~~~~~~L~~L~  230 (477)
T 2id5_A          172 L--SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPN------------------CLYGLNLTSLS  230 (477)
T ss_dssp             H--TTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTT------------------TTTTCCCSEEE
T ss_pred             h--cccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcc------------------cccCccccEEE
Confidence            4  67899999999999998 455566888999999998865432211110                  01134899999


Q ss_pred             CCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          335 LSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       335 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      +++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+++
T Consensus       231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence            99999996555789999999999999999998888889999999999999999999999999999999999999999996


Q ss_pred             cCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858          415 RIPEG-NQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       415 ~~p~~-~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      ..+.. ..+..+..+.+.+|+..|+++
T Consensus       311 ~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          311 LEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             eCHhHcCCCcccCEEEccCCCccCccc
Confidence            54432 345677888899999888753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.4e-35  Score=300.97  Aligned_cols=347  Identities=22%  Similarity=0.235  Sum_probs=278.0

Q ss_pred             CCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcC-chhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858           93 KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEI-PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL  168 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L  168 (523)
                      ++|++|+|++|.+++..|..   +++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..+. +|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA-NLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT-TCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc-cCCEE
Confidence            78999999999999887754   899999999999997554 67899999999999999999977799999998 89999


Q ss_pred             EccCCcccccCCC--CCCCCCCCCEEECcCCCCCCCCCcc-ccCCCCCcEEECCCCcCCCCchHhhhcC--CCCCeEEec
Q 009858          169 DLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPRS-LLNCANLQVLDLGNNKMKDTFPHWLGTL--RELQVLILR  243 (523)
Q Consensus       169 ~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~  243 (523)
                      ++++|.+++..+.  .|..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+  .+|+.|+++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            9999999875444  4899999999999999999887776 8999999999999999998888888876  789999999


Q ss_pred             cccccCcCCCccc------cccCCCCcEEeccCccCCCCCchHHHhcc--ccccccccccccccccccCccc--------
Q 009858          244 SNKFYGHLRDYEA------DYYFSKLRILDLSNNNFTGSLPAMFFKNM--KAMTDIGEAADENKSKYMGETY--------  307 (523)
Q Consensus       244 ~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~p~~~~~~l--~~L~~l~~~~~~~~~~~~~~~~--------  307 (523)
                      +|.+.+..+....      ...+++|++|++++|.+.+..|..+...+  +.++.+++..+...........        
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence            9998876554432      13467899999999999877776654432  6677776665532221111000        


Q ss_pred             -----cccceEEE-----ecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCC
Q 009858          308 -----YEDSVTLI-----IKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTD  377 (523)
Q Consensus       308 -----~~~~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  377 (523)
                           ......+.     +.......+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..|..|..+++
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence                 00011111     11222344566889999999999999888888999999999999999999888888999999


Q ss_pred             CCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858          378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      |++|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+|+..|.+|
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999888999999999999999999999654433 456677888888888877766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.7e-35  Score=315.82  Aligned_cols=370  Identities=21%  Similarity=0.230  Sum_probs=190.2

Q ss_pred             HHHHHHhhhhhcCCccccccccCCCccchhhhhhhc--cccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---C
Q 009858           39 FVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAA--EFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---S  113 (523)
Q Consensus        39 ~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~  113 (523)
                      .+..+..|++|++++|.+.++...   .+..+..+.  ++..+.+.......+..+++|++|++++|.+++..+..   +
T Consensus        68 ~~~~l~~L~~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  144 (680)
T 1ziw_A           68 LCQKLPMLKVLNLQHNELSQLSDK---TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL  144 (680)
T ss_dssp             HHHHCTTCCEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred             HHhcccCcCEEECCCCccCccChh---hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccc
Confidence            345566777777777766543332   222223333  33333444444455666777777777777777665543   6


Q ss_pred             CCCcEEEccCCcCCCcCchhhh--CCCCcCEEEccCCcCCccChhh----------------------------------
Q 009858          114 SNMRVFLISNNKFIGEIPRLIC--NTSTIEILDLSNNSLSGTIPEC----------------------------------  157 (523)
Q Consensus       114 ~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~----------------------------------  157 (523)
                      ++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..                                  
T Consensus       145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L  224 (680)
T 1ziw_A          145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI  224 (680)
T ss_dssp             TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred             ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence            6777777777776655554443  3455666666666555433332                                  


Q ss_pred             -----------------Hhhcc-cCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCcccc-----------
Q 009858          158 -----------------IGNFS-KSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLL-----------  208 (523)
Q Consensus       158 -----------------l~~l~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----------  208 (523)
                                       +..+. ++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+.           
T Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (680)
T 1ziw_A          225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK  304 (680)
T ss_dssp             CEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred             cEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence                             22222 1377777777777766666777777777777777776655444333           


Q ss_pred             ----------------------CCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc-------------------
Q 009858          209 ----------------------NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF-------------------  247 (523)
Q Consensus       209 ----------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-------------------  247 (523)
                                            .+++|++|++++|.+.+..+..+..+++|++|++++|.+                   
T Consensus       305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~  384 (680)
T 1ziw_A          305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH  384 (680)
T ss_dssp             TCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCC
T ss_pred             chhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCc
Confidence                                  344455555555555555555555555555555555432                   


Q ss_pred             ---------cCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCc-cccccceEEEec
Q 009858          248 ---------YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE-TYYEDSVTLIIK  317 (523)
Q Consensus       248 ---------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~  317 (523)
                               .+..+..+  ..+++|+.|++++|.+.+.+|...+.+++.|+.++++.+......... ........+...
T Consensus       385 ~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          385 ILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             EEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             eEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence                     11111111  335556666666666555555455555666666555554321110000 000000000000


Q ss_pred             -------chhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCC--------ccccCCCCCCEEe
Q 009858          318 -------RQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP--------SSLGDLTDLESLD  382 (523)
Q Consensus       318 -------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~  382 (523)
                             ......+..+++|+.|++++|.+++..+..+..+++|++|+|++|++++..+        ..|..+++|++|+
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence                   0111223345566666666666665555555555556666665555553211        1234444555555


Q ss_pred             CCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858          383 LSSNVLDGVIPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       383 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      |++|+++...+..|.++++|+.|++++|+++
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  573 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLN  573 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence            5555554333334444444555555444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.1e-36  Score=316.31  Aligned_cols=312  Identities=20%  Similarity=0.284  Sum_probs=251.2

Q ss_pred             CCCCcEEEccCCcCCCc-----------------Cchhhh--CCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858          113 SSNMRVFLISNNKFIGE-----------------IPRLIC--NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n  173 (523)
                      +++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..++.+. +|++|++++|
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCC
Confidence            89999999999999985                 899988  999999999999999999999999998 8999999999


Q ss_pred             c-ccc-cCCCCCCCC------CCCCEEECcCCCCCCCCCc--cccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858          174 R-FHG-TIPETFPKG------NNLTTLNFNGNELVGSVPR--SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR  243 (523)
Q Consensus       174 ~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  243 (523)
                      + +++ .+|..+..+      ++|++|++++|+++ .+|.  .+.++++|++|++++|.+.+.+| .++.+++|++|+++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~  361 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA  361 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence            8 988 788877776      89999999999999 8888  89999999999999999998888 89999999999999


Q ss_pred             cccccCcCCCccccccCCC-CcEEeccCccCCCCCchHHHhcc--cccccccccccccccc---ccCc---c--ccccce
Q 009858          244 SNKFYGHLRDYEADYYFSK-LRILDLSNNNFTGSLPAMFFKNM--KAMTDIGEAADENKSK---YMGE---T--YYEDSV  312 (523)
Q Consensus       244 ~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l--~~L~~l~~~~~~~~~~---~~~~---~--~~~~~~  312 (523)
                      +|.+. .+|..+  ..+++ |++|++++|.++ .+|.. +..+  ++|+.++++.+.....   .++.   .  ......
T Consensus       362 ~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          362 YNQIT-EIPANF--CGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             SSEEE-ECCTTS--EEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             CCccc-cccHhh--hhhcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            99988 555554  66888 999999999998 78864 3443  4789999887765431   1110   0  001111


Q ss_pred             EE-----EecchhHHHHHhhcccccccCCCCccCcCcchh-hcCc-------ccCCeeeCcCCcccccCCcccc--CCCC
Q 009858          313 TL-----IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPEL-MGKL-------HSLRLLNLSQNILSGNIPSSLG--DLTD  377 (523)
Q Consensus       313 ~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l-------~~L~~L~Ls~n~l~~~~p~~~~--~l~~  377 (523)
                      .+     .+.......+..+++|++|+|++|.++ .+|.. +...       ++|++|+|++|+++ .+|..+.  .+++
T Consensus       437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  514 (636)
T 4eco_A          437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY  514 (636)
T ss_dssp             EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred             EEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence            11     122334455666889999999999998 55543 3322       38999999999998 6787776  8999


Q ss_pred             CCEEeCCCCcCCCcCChhhcCCCCCCeEEC------CCCcCcccCCCC-CCCCcccCCccCCCCC
Q 009858          378 LESLDLSSNVLDGVIPRELTRLTFLAVLNL------SRNKLEGRIPEG-NQFATFSSDSYGGNLG  435 (523)
Q Consensus       378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~p~~-~~~~~~~~~~~~gn~~  435 (523)
                      |++|+|++|++++ +|..+..+++|+.|++      ++|++.+.+|.. ..+..+..+.+.+|..
T Consensus       515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            9999999999997 7888889999999999      567788888864 3456667777777754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-35  Score=314.11  Aligned_cols=385  Identities=17%  Similarity=0.108  Sum_probs=244.0

Q ss_pred             HhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEE
Q 009858           44 LFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFL  120 (523)
Q Consensus        44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~  120 (523)
                      ..++.|+++.+.+.++.......+.. ....++..+.+.......|..+++|++|+|++|.+++..|..   +++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCcc-CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            45667777777665544322222222 122233334444455555666677777777777776665543   66777777


Q ss_pred             ccCCcCCCcCchhhhCCCCcCEEEccCCcCCc-cChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC----EEECc
Q 009858          121 ISNNKFIGEIPRLICNTSTIEILDLSNNSLSG-TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT----TLNFN  195 (523)
Q Consensus       121 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~----~L~L~  195 (523)
                      +++|.+++..+..|+++++|++|++++|.+++ .+|..++.+. +|++|++++|.+++..|..|+.+.+|+    +|+++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS  189 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-CCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence            77777766665667777777777777777664 4566777666 677777777777766666666555443    67777


Q ss_pred             CCCCCCCCCccccCCCCCcEEECCCCcCCC--------------------------------------------------
Q 009858          196 GNELVGSVPRSLLNCANLQVLDLGNNKMKD--------------------------------------------------  225 (523)
Q Consensus       196 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--------------------------------------------------  225 (523)
                      +|.+.+..+..+... +|+.|++++|.+.+                                                  
T Consensus       190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  268 (606)
T 3vq2_A          190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL  268 (606)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred             CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence            766654333322221 34444444433210                                                  


Q ss_pred             ------------------------------CchHhhhcCCCCCeEEeccccccCcCCCc------------------ccc
Q 009858          226 ------------------------------TFPHWLGTLRELQVLILRSNKFYGHLRDY------------------EAD  257 (523)
Q Consensus       226 ------------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------------------~~~  257 (523)
                                                    .+| .+..+++|++|++++|.+ +.+|..                  ...
T Consensus       269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~  346 (606)
T 3vq2_A          269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKK  346 (606)
T ss_dssp             CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCC
T ss_pred             cccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhh
Confidence                                          111 233334455555555544 222211                  112


Q ss_pred             ccCCCCcEEeccCccCCCCC-chHHHhccccccccccccccccccccCccccccceEEE-----ecchhH-HHHHhhccc
Q 009858          258 YYFSKLRILDLSNNNFTGSL-PAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI-----IKRQEV-KLMKILTIF  330 (523)
Q Consensus       258 ~~l~~L~~L~l~~n~l~~~~-p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~L  330 (523)
                      ..+++|++|++++|.+++.. ....+..++.|+.++++.+........-........+.     +..... ..+..+++|
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            45788999999999887442 13457889999999998775433211111111111111     112222 456678999


Q ss_pred             ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccc-cCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858          331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG-NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR  409 (523)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  409 (523)
                      ++|++++|.+++..|..+..+++|++|++++|.+++ .+|..++.+++|++|+|++|++++..|..+..+++|++|++++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            999999999998889999999999999999999997 4788999999999999999999999999999999999999999


Q ss_pred             CcCcccCCCC-CCCCcccCCccCCC
Q 009858          410 NKLEGRIPEG-NQFATFSSDSYGGN  433 (523)
Q Consensus       410 N~l~~~~p~~-~~~~~~~~~~~~gn  433 (523)
                      |++++.+|.. ..+..+..+.+.+|
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCC
Confidence            9999876653 23444444444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.4e-35  Score=316.45  Aligned_cols=328  Identities=15%  Similarity=0.185  Sum_probs=234.8

Q ss_pred             CCCCCCCCccEEEccCCCCcc-----------------CCCCC-----CCCCcEEEccCCcCCCcCchhhhCCCCcCEEE
Q 009858           87 NKKLPWKNLEYLDLRSNLLQG-----------------PVPAP-----SSNMRVFLISNNKFIGEIPRLICNTSTIEILD  144 (523)
Q Consensus        87 ~~~~~~~~L~~L~L~~n~l~~-----------------~~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  144 (523)
                      ..+..+++|++|+|++|.+++                 .+|..     +++|++|+|++|.+.+.+|..|.++++|++|+
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            345568899999999999988                 24433     68899999999998888998899999999999


Q ss_pred             ccCCc-CCc-cChhhHhhcc------cCCcEEEccCCcccccCCC--CCCCCCCCCEEECcCCCCCCCCCccccCCCCCc
Q 009858          145 LSNNS-LSG-TIPECIGNFS------KSLRVLDLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQ  214 (523)
Q Consensus       145 L~~n~-l~~-~~p~~l~~l~------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  214 (523)
                      |++|+ +++ .+|..++.+.      ++|++|++++|.++ .+|.  .|.++++|++|++++|.++ .+| .+..+++|+
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~  598 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT  598 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence            99998 887 7888887763      36999999999888 7777  7888888899999888887 677 788888888


Q ss_pred             EEECCCCcCCCCchHhhhcCCC-CCeEEeccccccCcCCCccccccCC-----------------------------CCc
Q 009858          215 VLDLGNNKMKDTFPHWLGTLRE-LQVLILRSNKFYGHLRDYEADYYFS-----------------------------KLR  264 (523)
Q Consensus       215 ~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~-----------------------------~L~  264 (523)
                      .|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.....+                             +|+
T Consensus       599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~  676 (876)
T 4ecn_A          599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS  676 (876)
T ss_dssp             EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred             EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence            8888888887 67777888888 888888888876 444433222222                             444


Q ss_pred             EEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCc
Q 009858          265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEI  344 (523)
Q Consensus       265 ~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  344 (523)
                      .|++++|.++ .+|..++..++.|+.|+++.+...  .++...+...         ......+++|+.|+|++|.++ .+
T Consensus       677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~---------~~~l~nl~~L~~L~Ls~N~L~-~l  743 (876)
T 4ecn_A          677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT--SIPENSLKPK---------DGNYKNTYLLTTIDLRFNKLT-SL  743 (876)
T ss_dssp             EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCT---------TSCCTTGGGCCEEECCSSCCC-CC
T ss_pred             EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC--ccChHHhccc---------cccccccCCccEEECCCCCCc-cc
Confidence            5555555554 455555555555555555544322  1111100000         000112447888888888888 67


Q ss_pred             chhhc--CcccCCeeeCcCCcccccCCccccCCCCCCEEeCCC------CcCCCcCChhhcCCCCCCeEECCCCcCcccC
Q 009858          345 PELMG--KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS------NVLDGVIPRELTRLTFLAVLNLSRNKLEGRI  416 (523)
Q Consensus       345 ~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~------n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  416 (523)
                      |..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.+
T Consensus       744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I  821 (876)
T 4ecn_A          744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV  821 (876)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence            77776  78888888888888885 677778888888888865      677777888888888888888888888 577


Q ss_pred             CCCCCCCcccCCccCCCCC
Q 009858          417 PEGNQFATFSSDSYGGNLG  435 (523)
Q Consensus       417 p~~~~~~~~~~~~~~gn~~  435 (523)
                      |.. ....+..+.+.+|+.
T Consensus       822 p~~-l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          822 DEK-LTPQLYILDIADNPN  839 (876)
T ss_dssp             CSC-CCSSSCEEECCSCTT
T ss_pred             CHh-hcCCCCEEECCCCCC
Confidence            765 234566666666653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-35  Score=307.70  Aligned_cols=182  Identities=20%  Similarity=0.212  Sum_probs=125.9

Q ss_pred             cCCCCcEEeccCccCCCCCc-hHHHhccccccccccccccccccccCccccccceEEE-----ecch-hHHHHHhhcccc
Q 009858          259 YFSKLRILDLSNNNFTGSLP-AMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLI-----IKRQ-EVKLMKILTIFT  331 (523)
Q Consensus       259 ~l~~L~~L~l~~n~l~~~~p-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~L~  331 (523)
                      .+++|++|++++|.+++... ...+.+++.|+.++++.+........-........+.     +... ....+..+++|+
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  424 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  424 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence            35566666666666553220 2335566667766666553322110000011111111     1111 113456678999


Q ss_pred             cccCCCCccCcCcchhhcCcccCCeeeCcCCccc-ccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCC
Q 009858          332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS-GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN  410 (523)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  410 (523)
                      +|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++|++++|
T Consensus       425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            9999999998888888999999999999999987 578888999999999999999999888999999999999999999


Q ss_pred             cCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858          411 KLEGRIPEG-NQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       411 ~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      ++++..|.. ..+..+....+.+|+..|.+|
T Consensus       505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            999776653 456677777788887776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.1e-34  Score=304.79  Aligned_cols=375  Identities=19%  Similarity=0.167  Sum_probs=226.8

Q ss_pred             cccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcC
Q 009858           54 CVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEI  130 (523)
Q Consensus        54 c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~  130 (523)
                      |...++..+|.. +.......++..+.+.......|..+++|++|+|++|.+++..|..   +++|++|++++|.+++..
T Consensus        19 c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   97 (606)
T 3t6q_A           19 CENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA   97 (606)
T ss_dssp             CTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred             CCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccC
Confidence            444444445532 2223444455555555555555666666777777776666655543   666667777766666666


Q ss_pred             chhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCC
Q 009858          131 PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC  210 (523)
Q Consensus       131 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  210 (523)
                      |..|.++++|++|++++|.+++..|..+..+. +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus        98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  176 (606)
T 3t6q_A           98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL  176 (606)
T ss_dssp             TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred             hhhhcccccccEeeccccCcccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence            66666666677777776666643355566665 56666666666665433344446666666666666665555555555


Q ss_pred             CCCc--EEECCCCcCC----------------------------------------------------------------
Q 009858          211 ANLQ--VLDLGNNKMK----------------------------------------------------------------  224 (523)
Q Consensus       211 ~~L~--~L~L~~n~l~----------------------------------------------------------------  224 (523)
                      ++|+  .|++++|.+.                                                                
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L  256 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV  256 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred             cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence            5555  4555555443                                                                


Q ss_pred             -----------CCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccc
Q 009858          225 -----------DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE  293 (523)
Q Consensus       225 -----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~  293 (523)
                                 +..+..|..+++|++|++++|.+.. +|..+  ..+++|++|++++|.+. .++...+..+++|+.+++
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGL--VGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSC--CSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEEC
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CChhh--cccccCCEEECccCCcC-cCchhhhhccCcCCEEEC
Confidence                       3333345566677777777776653 33333  45677777777777776 333344666777777776


Q ss_pred             ccccccccccCc--cccccceEEEe-----cchh--HHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcc
Q 009858          294 AADENKSKYMGE--TYYEDSVTLII-----KRQE--VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNIL  364 (523)
Q Consensus       294 ~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  364 (523)
                      .++.........  ........+..     ....  ...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            665432111000  00011111111     1111  22345577888888888888777777888888888888888888


Q ss_pred             cccCCc-cccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCccc-CCCC---CCCCcccCCccCCCC
Q 009858          365 SGNIPS-SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR-IPEG---NQFATFSSDSYGGNL  434 (523)
Q Consensus       365 ~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~---~~~~~~~~~~~~gn~  434 (523)
                      ++..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. +|..   ..+..+..+.+.+|.
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            766554 477888888888888888887788888888888888888888763 2322   233445555555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-35  Score=285.66  Aligned_cols=259  Identities=29%  Similarity=0.506  Sum_probs=211.1

Q ss_pred             CCCcEEEccCCcCCC--cCchhhhCCCCcCEEEccC-CcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCC
Q 009858          114 SNMRVFLISNNKFIG--EIPRLICNTSTIEILDLSN-NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT  190 (523)
Q Consensus       114 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  190 (523)
                      .+++.|++++|.+.+  .+|..|.++++|++|++++ |.+.+.+|..++.+. +|++|++++|.+++..|..|.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            578888888888887  7788888888888888884 888778888888887 788888888888877887788888888


Q ss_pred             EEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCC-CCCeEEeccccccCcCCCccccccCCCCcEEecc
Q 009858          191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLR-ELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS  269 (523)
Q Consensus       191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  269 (523)
                      +|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+..+..+  ..          
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~----------  196 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--AN----------  196 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GG----------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hC----------
Confidence            888888888777777788888888888888887767777776665 66666666655543333222  11          


Q ss_pred             CccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhc
Q 009858          270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMG  349 (523)
Q Consensus       270 ~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  349 (523)
                                                                               +. |+.|++++|.+++..|..+.
T Consensus       197 ---------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          197 ---------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             ---------------------------------------------------------CC-CSEEECCSSEEEECCGGGCC
T ss_pred             ---------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHh
Confidence                                                                     23 67777778888777888888


Q ss_pred             CcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCc
Q 009858          350 KLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDS  429 (523)
Q Consensus       350 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  429 (523)
                      .+++|+.|+|++|.+++.+|. +..+++|++|+|++|.+++.+|..+..+++|++|++++|+++|.+|....+..+....
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~  297 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA  297 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred             cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence            999999999999999876665 8889999999999999999999999999999999999999999999988889999999


Q ss_pred             cCCCCCCCCCCCCCCC
Q 009858          430 YGGNLGLCGFPLSKNC  445 (523)
Q Consensus       430 ~~gn~~lc~~~~~~~c  445 (523)
                      +.+|+.+||.|+. .|
T Consensus       298 l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          298 YANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TCSSSEEESTTSS-CC
T ss_pred             hcCCCCccCCCCC-CC
Confidence            9999999998876 46

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=324.59  Aligned_cols=357  Identities=21%  Similarity=0.218  Sum_probs=188.5

Q ss_pred             CCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchh--hhCCCCcCEEEccCCcCCccCh-hhHh
Q 009858           86 GNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRL--ICNTSTIEILDLSNNSLSGTIP-ECIG  159 (523)
Q Consensus        86 ~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~  159 (523)
                      ...|..+++|++|+|++|.+++..|..   +++|++|++++|.+++..|..  |.++++|++|++++|.+++..+ ..++
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence            344555666666666666666555543   566666666666666544433  5666666666666666654333 3455


Q ss_pred             hcccCCcEEEccCCcccccCCCCCCCC--CCCCEEECcCCCCCCCCCccccCCCC------CcEEECCCCcCCC------
Q 009858          160 NFSKSLRVLDLRKNRFHGTIPETFPKG--NNLTTLNFNGNELVGSVPRSLLNCAN------LQVLDLGNNKMKD------  225 (523)
Q Consensus       160 ~l~~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~------  225 (523)
                      .+. +|++|++++|.+++..+..+..+  ++|+.|++++|.+.+..|..+..+++      |+.|++++|.+.+      
T Consensus       146 ~L~-~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  224 (844)
T 3j0a_A          146 KLN-SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF  224 (844)
T ss_dssp             TCS-SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred             hCC-CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence            555 56666666666665555555544  55666665555555444433333332      5555555554433      


Q ss_pred             --------------------------------------------------------CchHhhhcCCCCCeEEeccccccC
Q 009858          226 --------------------------------------------------------TFPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       226 --------------------------------------------------------~~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                                                                              ..|..+..+++|+.|++++|.+.+
T Consensus       225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  304 (844)
T 3j0a_A          225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK  304 (844)
T ss_dssp             GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred             HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence                                                                    333334444444444444444444


Q ss_pred             cCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCc-cccccceEEEecchhHHHHHhhc
Q 009858          250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE-TYYEDSVTLIIKRQEVKLMKILT  328 (523)
Q Consensus       250 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  328 (523)
                      ..+..+  ..+++|++|++++|.+++ ++...+.++++|+.++++.+......... ........+............++
T Consensus       305 ~~~~~~--~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~  381 (844)
T 3j0a_A          305 IADEAF--YGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP  381 (844)
T ss_dssp             ECTTTT--TTCSSCCEEEEESCCCSC-CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCC
T ss_pred             CChHHh--cCCCCCCEEECCCCCCCc-cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCC
Confidence            433333  334555555555555542 22223444555555555444321110000 00001111111110000011122


Q ss_pred             ccc--------------------cccCCCCccCcCc-chhhcCcccCCeeeCcCCccccc--------------------
Q 009858          329 IFT--------------------TIDLSKNSFHGEI-PELMGKLHSLRLLNLSQNILSGN--------------------  367 (523)
Q Consensus       329 ~L~--------------------~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~--------------------  367 (523)
                      +|+                    .|++++|.+++.. +..+..+++|+.|+|++|++++.                    
T Consensus       382 ~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N  461 (844)
T 3j0a_A          382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN  461 (844)
T ss_dssp             SCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred             CcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence            233                    3333333333211 12234667777777777766532                    


Q ss_pred             ----------CCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCC---
Q 009858          368 ----------IPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNL---  434 (523)
Q Consensus       368 ----------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~---  434 (523)
                                .+..|..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++..|.... ..+..+.+.+|.   
T Consensus       462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~  540 (844)
T 3j0a_A          462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA  540 (844)
T ss_dssp             CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred             ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence                      224467788899999999999988888899999999999999999965554322 444444444442   


Q ss_pred             ------------CCCCCCCCCCCCC
Q 009858          435 ------------GLCGFPLSKNCSN  447 (523)
Q Consensus       435 ------------~lc~~~~~~~c~~  447 (523)
                                  .+.++|+.|.|..
T Consensus       541 ~~~~~~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          541 PNPDVFVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred             CChhHhCCcCEEEecCCCccccccc
Confidence                        2346789999963

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.5e-34  Score=299.49  Aligned_cols=363  Identities=18%  Similarity=0.228  Sum_probs=245.0

Q ss_pred             hhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccC
Q 009858           71 ASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN  147 (523)
Q Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  147 (523)
                      ....++..+.+.......+..+++|++|++++|.+++..|..   +++|++|++++|.+++..+..|.++++|++|++++
T Consensus        28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  107 (549)
T 2z81_A           28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG  107 (549)
T ss_dssp             CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred             ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence            344455555555555566777888888888888888777644   77888888888888877777788888888888888


Q ss_pred             CcCCc-cChhhHhhcccCCcEEEccCCc-ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC
Q 009858          148 NSLSG-TIPECIGNFSKSLRVLDLRKNR-FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD  225 (523)
Q Consensus       148 n~l~~-~~p~~l~~l~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  225 (523)
                      |.+++ ..|..+..+. +|++|++++|. +....+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+. 
T Consensus       108 n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-  185 (549)
T 2z81_A          108 NPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-  185 (549)
T ss_dssp             CCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-
T ss_pred             CcccccchhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-
Confidence            88874 3456677776 78888888887 44334457888888888888888888777878877777777777777765 


Q ss_pred             CchHhh-hcCCCCCeEEeccccccCcC--CCcc-----------------------------------------------
Q 009858          226 TFPHWL-GTLRELQVLILRSNKFYGHL--RDYE-----------------------------------------------  255 (523)
Q Consensus       226 ~~~~~l-~~l~~L~~L~l~~n~l~~~~--~~~~-----------------------------------------------  255 (523)
                      .+|..+ ..+++|++|++++|.+.+..  +...                                               
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG  265 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred             ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence            344433 45777777777777665521  0000                                               


Q ss_pred             ---------------------------------------ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccc
Q 009858          256 ---------------------------------------ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD  296 (523)
Q Consensus       256 ---------------------------------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~  296 (523)
                                                             .....++|+.|++++|.+. .+|..++..+++|+.++++.+
T Consensus       266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred             cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence                                                   0011245677777777775 678777788889999988877


Q ss_pred             cccccccC----ccccccceEEEe-----cchh--HHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCccc
Q 009858          297 ENKSKYMG----ETYYEDSVTLII-----KRQE--VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS  365 (523)
Q Consensus       297 ~~~~~~~~----~~~~~~~~~~~~-----~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  365 (523)
                      ........    .........+..     ....  ...+..+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence            65432100    011111111111     1111  244667889999999999988 67777888888888888888876


Q ss_pred             ccCCccc------------------cCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCccc
Q 009858          366 GNIPSSL------------------GDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFS  426 (523)
Q Consensus       366 ~~~p~~~------------------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~  426 (523)
                      + +|..+                  ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+.
T Consensus       424 ~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          424 V-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             C-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             c-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence            3 33221                  25677778888888777 4444 356778888888888888766642 4555666


Q ss_pred             CCccCCCCCCCCCC
Q 009858          427 SDSYGGNLGLCGFP  440 (523)
Q Consensus       427 ~~~~~gn~~lc~~~  440 (523)
                      ...+.+|+..|++|
T Consensus       501 ~L~l~~N~~~~~~~  514 (549)
T 2z81_A          501 KIWLHTNPWDCSCP  514 (549)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEEecCCCccCCCc
Confidence            67777777766654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9e-35  Score=305.41  Aligned_cols=357  Identities=19%  Similarity=0.217  Sum_probs=222.4

Q ss_pred             HHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC---CCCCC
Q 009858           40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA---PSSNM  116 (523)
Q Consensus        40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L  116 (523)
                      +..+.+|++|++++|.+.++.......+.. ....++..+.+.......|..+++|++|++++|.+++..+.   .+++|
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTT-CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchh-CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence            444556667777777655543322222211 22223333334444445566677777777777777655442   26777


Q ss_pred             cEEEccCCcCCC-cCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCC----cEEEccCCcccccCCCCC--------
Q 009858          117 RVFLISNNKFIG-EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSL----RVLDLRKNRFHGTIPETF--------  183 (523)
Q Consensus       117 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L----~~L~L~~n~l~~~~p~~~--------  183 (523)
                      ++|++++|.+.+ .+|..|.++++|++|++++|.+++..|..+..+. +|    ++|++++|.+++..|..|        
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L  205 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL  205 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH-TCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh-ccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence            777777777765 3567777777777777777777755566666665 56    677777776654443332        


Q ss_pred             -------------------------------------------------------------------------CCCCCCC
Q 009858          184 -------------------------------------------------------------------------PKGNNLT  190 (523)
Q Consensus       184 -------------------------------------------------------------------------~~l~~L~  190 (523)
                                                                                               ..+++|+
T Consensus       206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~  285 (570)
T 2z63_A          206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS  285 (570)
T ss_dssp             EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred             ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence                                                                                     2234555


Q ss_pred             EEECcCCCCCCCCCccccC------------------------------------------CCCCcEEECCCCcCCCCc-
Q 009858          191 TLNFNGNELVGSVPRSLLN------------------------------------------CANLQVLDLGNNKMKDTF-  227 (523)
Q Consensus       191 ~L~L~~n~l~~~~~~~l~~------------------------------------------l~~L~~L~L~~n~l~~~~-  227 (523)
                      +|++++|.+. .+|..+..                                          +++|++|++++|.+.+.. 
T Consensus       286 ~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  364 (570)
T 2z63_A          286 SFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC  364 (570)
T ss_dssp             EEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred             EEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence            5555555544 23333332                                          333333444443333221 


Q ss_pred             -hHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcc
Q 009858          228 -PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET  306 (523)
Q Consensus       228 -~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~  306 (523)
                       |..+..+++|++|++++|.+.+..+. +  ..+++|++|++++|.+.+..|...+.++++|+.++++.+...       
T Consensus       365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------  434 (570)
T 2z63_A          365 CSQSDFGTTSLKYLDLSFNGVITMSSN-F--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-------  434 (570)
T ss_dssp             EEHHHHTCSCCCEEECCSCSEEEEEEE-E--ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE-------
T ss_pred             ccccccccCccCEEECCCCcccccccc-c--cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc-------
Confidence             33444444444444444444332222 1  334455555555555443333333444555555554433211       


Q ss_pred             ccccceEEEecchhHHHHHhhcccccccCCCCccC-cCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCC
Q 009858          307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFH-GEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSS  385 (523)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  385 (523)
                                 ......+..+++|++|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus       435 -----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          435 -----------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             -----------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             -----------ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence                       112234456899999999999997 57889999999999999999999988899999999999999999


Q ss_pred             CcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC
Q 009858          386 NVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN  420 (523)
Q Consensus       386 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  420 (523)
                      |++++.++..|..+++|+.|++++|++++.+|...
T Consensus       504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            99999988899999999999999999999988743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.2e-34  Score=306.53  Aligned_cols=370  Identities=20%  Similarity=0.215  Sum_probs=223.6

Q ss_pred             HHHHHhhhhhcCCccccccccCCCccchhhhhhhc--cccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CC
Q 009858           40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAA--EFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SS  114 (523)
Q Consensus        40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~  114 (523)
                      +..+.+|++|+++.|.+.+...   ..+..+..+.  ++..+.+.......|..+++|++|++++|.+++..+..   ++
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  121 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK  121 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCT---THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred             HhCCCcCcEEECCCCccCccCH---HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence            5556778888888887665433   3333434343  33444455555666888999999999999998877654   88


Q ss_pred             CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhh--cccCCcEEEccCCcccccCCCCCCCC------
Q 009858          115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGN--FSKSLRVLDLRKNRFHGTIPETFPKG------  186 (523)
Q Consensus       115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~~L~~L~L~~n~l~~~~p~~~~~l------  186 (523)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..  +. +|++|++++|.+++..|..|..+      
T Consensus       122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  200 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGL  200 (680)
T ss_dssp             TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC-EESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred             CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc-cccEEECCCCcccccChhhhhhhhhhhhh
Confidence            9999999999999888888999999999999999998666666543  34 78889988888876666544322      


Q ss_pred             ---------------------CCCCEEECcCCCCCCCCCccccCCCC--CcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858          187 ---------------------NNLTTLNFNGNELVGSVPRSLLNCAN--LQVLDLGNNKMKDTFPHWLGTLRELQVLILR  243 (523)
Q Consensus       187 ---------------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  243 (523)
                                           ++|++|++++|.+.+..|..+.+++.  |++|++++|.+.+..|..++.+++|++|+++
T Consensus       201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (680)
T 1ziw_A          201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE  280 (680)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence                                 23344444444444444444444332  5555555544444444444444444444444


Q ss_pred             cccccCcCCCcc-------------------------------ccccCCCCcEEeccCccCCCCCchHHHhccccccccc
Q 009858          244 SNKFYGHLRDYE-------------------------------ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIG  292 (523)
Q Consensus       244 ~n~l~~~~~~~~-------------------------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~  292 (523)
                      +|.+.+..+..+                               ....+++|++|++++|.+.+ ++...+.++++|+.++
T Consensus       281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~  359 (680)
T 1ziw_A          281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLS  359 (680)
T ss_dssp             SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-CCTTTTTTCTTCCEEE
T ss_pred             CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-CChhHhccccCCcEEE
Confidence            444433322211                               22457788888888888874 4555677888888888


Q ss_pred             cccccccccccCccccc-----cceEE-----EecchhHHHHHhhcccccccCCCCccCcCcc-hhhcCcccCCeeeCcC
Q 009858          293 EAADENKSKYMGETYYE-----DSVTL-----IIKRQEVKLMKILTIFTTIDLSKNSFHGEIP-ELMGKLHSLRLLNLSQ  361 (523)
Q Consensus       293 ~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~  361 (523)
                      ++.+......++...+.     ....+     .+.......+..+++|+.|++++|.+++.+| ..+..+++|++|++++
T Consensus       360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~  439 (680)
T 1ziw_A          360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY  439 (680)
T ss_dssp             CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred             CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence            77654221111110000     00000     0111112233445555666666665554333 4455555555555555


Q ss_pred             Ccccc--------------------------cCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          362 NILSG--------------------------NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       362 n~l~~--------------------------~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      |++.+                          .+|..|..+++|++|+|++|++++..+..|.++++|++|++++|++++
T Consensus       440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  518 (680)
T 1ziw_A          440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR  518 (680)
T ss_dssp             CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred             CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence            55443                          445566666777777777777776666666777777777777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.2e-34  Score=301.97  Aligned_cols=384  Identities=20%  Similarity=0.208  Sum_probs=251.1

Q ss_pred             ccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCc
Q 009858           53 TCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGE  129 (523)
Q Consensus        53 ~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~  129 (523)
                      +|...+++.+|.. ++..+...++..+.+..+....|..+++|++|+|++|+|++..+..   +++|++|+|++|++++.
T Consensus        37 ~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           37 QCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             ECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             ECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            5777777777743 3334556667777777777777778888888888888887766643   77888888888888776


Q ss_pred             CchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCccccc-CCCCCCCCCCCCEEECcCCCCCCCCCcccc
Q 009858          130 IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGT-IPETFPKGNNLTTLNFNGNELVGSVPRSLL  208 (523)
Q Consensus       130 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~  208 (523)
                      .+.+|.++++|++|++++|++++..+..++.+. +|++|++++|.+++. .|..+..+++|++|++++|++++..+..+.
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence            667788888888888888888744444567776 788888888887643 456677778888888888777654444332


Q ss_pred             CCCC----------------------------------------------------------------------------
Q 009858          209 NCAN----------------------------------------------------------------------------  212 (523)
Q Consensus       209 ~l~~----------------------------------------------------------------------------  212 (523)
                      .+.+                                                                            
T Consensus       195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence            2211                                                                            


Q ss_pred             -------------------------------------------------------CcEEECCCCcCCCCch---------
Q 009858          213 -------------------------------------------------------LQVLDLGNNKMKDTFP---------  228 (523)
Q Consensus       213 -------------------------------------------------------L~~L~L~~n~l~~~~~---------  228 (523)
                                                                             |+.|++.+|.+.+..+         
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l  354 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL  354 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhc
Confidence                                                                   1111111111110000         


Q ss_pred             ----------HhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccc
Q 009858          229 ----------HWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN  298 (523)
Q Consensus       229 ----------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~  298 (523)
                                .....+++|+.|+++.|.+............+.+|+.+++..+.... ++. .+..++.++.+++..+..
T Consensus       355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~-~~~~l~~L~~l~l~~~~~  432 (635)
T 4g8a_A          355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSS-NFLGLEQLEHLDFQHSNL  432 (635)
T ss_dssp             EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECS-CCTTCTTCCEEECTTSEE
T ss_pred             ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccc-cccccccccchhhhhccc
Confidence                      00113455666666666654322222222445667777776665542 221 134455555555443322


Q ss_pred             cccccCccc--cccceEE-----EecchhHHHHHhhcccccccCCCCccC-cCcchhhcCcccCCeeeCcCCcccccCCc
Q 009858          299 KSKYMGETY--YEDSVTL-----IIKRQEVKLMKILTIFTTIDLSKNSFH-GEIPELMGKLHSLRLLNLSQNILSGNIPS  370 (523)
Q Consensus       299 ~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  370 (523)
                      .........  .......     .........+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|.
T Consensus       433 ~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~  512 (635)
T 4g8a_A          433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT  512 (635)
T ss_dssp             ESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH
Confidence            111100000  0000000     111122334455789999999999754 45688899999999999999999999999


Q ss_pred             cccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC-CC-CcccCCccCCCCCCCCCC
Q 009858          371 SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN-QF-ATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       371 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~-~~~~~~~~~gn~~lc~~~  440 (523)
                      .|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|... .+ .++..+.+.+||+.|+|.
T Consensus       513 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999999999999999999999999999999999998888643 23 467778889999888764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=296.90  Aligned_cols=363  Identities=21%  Similarity=0.227  Sum_probs=259.0

Q ss_pred             HhhhhhcCCccccccccCCCccchhhhhhh--ccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCCCCCCcEEEc
Q 009858           44 LFLELLAGSTCVVHGLQSHPRNTLKDYASA--AEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLI  121 (523)
Q Consensus        44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L  121 (523)
                      ..+++|++++|.+.++..   ..+..+..+  .++..+.+.......+..+++|++|+|++|.+++..+..+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWT---SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCH---HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEEC
T ss_pred             ccccEEECCCCcccccCh---hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEec
Confidence            567788888887665332   223333333  344444455555566777888889999888888655556888889999


Q ss_pred             cCCcCCC-cCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCC--cEEEccCCcc--cccCCCCCCCCC---------
Q 009858          122 SNNKFIG-EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSL--RVLDLRKNRF--HGTIPETFPKGN---------  187 (523)
Q Consensus       122 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L--~~L~L~~n~l--~~~~p~~~~~l~---------  187 (523)
                      ++|.+++ ..|..|+++++|++|++++|.+++   ..+..+. +|  ++|++++|.+  .+..|..+..+.         
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~-~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIA-HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGT-TSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccc-cceeeEEEeecccccccccccccccccccceEEEEec
Confidence            9888886 467888888889999998888874   3455555 67  8888888888  566666665533         


Q ss_pred             --------------------------------------------------------------------------CCCEEE
Q 009858          188 --------------------------------------------------------------------------NLTTLN  193 (523)
Q Consensus       188 --------------------------------------------------------------------------~L~~L~  193 (523)
                                                                                                +|++|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence                                                                                      455555


Q ss_pred             CcCCCCCCCCCccc-----cCCCCCcEEECCCCcCCCCch-HhhhcC---CCCCeEEeccccccCcCCCccccccCCCCc
Q 009858          194 FNGNELVGSVPRSL-----LNCANLQVLDLGNNKMKDTFP-HWLGTL---RELQVLILRSNKFYGHLRDYEADYYFSKLR  264 (523)
Q Consensus       194 L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  264 (523)
                      +++|++.+.+|..+     .++++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+...    ...+++|+
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~  327 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC----PSKISPFL  327 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC----CSSCCCCC
T ss_pred             eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc----hhhCCccc
Confidence            55555555566555     5666666666666665  233 344433   567777777776543221    14578999


Q ss_pred             EEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCc
Q 009858          265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEI  344 (523)
Q Consensus       265 ~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  344 (523)
                      +|++++|.+++.+|.. +..++.|+.++++.+.....                ......+..+++|++|++++|.+++.+
T Consensus       328 ~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKEL----------------SKIAEMTTQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             EEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBH----------------HHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred             EEEeECCccChhhhhh-hccCCCCCEEEccCCccCcc----------------ccchHHHhhCCCCCEEECCCCcCCccc
Confidence            9999999998766644 67888898888876643210                011234566899999999999999756


Q ss_pred             ch-hhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC--CC
Q 009858          345 PE-LMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG--NQ  421 (523)
Q Consensus       345 ~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~  421 (523)
                      |. .+..+++|++|++++|++++..|..+.  ++|++|+|++|+++ .+|..+..+++|++|++++|+++ .+|..  ..
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~  466 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR  466 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhcc
Confidence            65 478899999999999999888777664  79999999999999 67777779999999999999999 56653  34


Q ss_pred             CCcccCCccCCCCCCCCCC
Q 009858          422 FATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       422 ~~~~~~~~~~gn~~lc~~~  440 (523)
                      +..+....+.+|+..|.++
T Consensus       467 l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          467 LTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CTTCCEEECCSSCBCCCHH
T ss_pred             CCcccEEECcCCCCcccCC
Confidence            5667777788888777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-33  Score=302.74  Aligned_cols=331  Identities=20%  Similarity=0.253  Sum_probs=258.6

Q ss_pred             CCccEEEccC--CCCccCCCCC--CCCCcEEEccCCcCCC-----------------cCchhhh--CCCCcCEEEccCCc
Q 009858           93 KNLEYLDLRS--NLLQGPVPAP--SSNMRVFLISNNKFIG-----------------EIPRLIC--NTSTIEILDLSNNS  149 (523)
Q Consensus        93 ~~L~~L~L~~--n~l~~~~~~~--~~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~  149 (523)
                      ..++.+.+..  |.+++.++..  +++|++|+|++|.+++                 .+|..++  ++++|++|+|++|.
T Consensus       423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~  502 (876)
T 4ecn_A          423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP  502 (876)
T ss_dssp             CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT
T ss_pred             cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC
Confidence            3444444443  7788887654  9999999999999998                 3888877  99999999999999


Q ss_pred             CCccChhhHhhcccCCcEEEccCCc-ccc-cCCCCC-------CCCCCCCEEECcCCCCCCCCCc--cccCCCCCcEEEC
Q 009858          150 LSGTIPECIGNFSKSLRVLDLRKNR-FHG-TIPETF-------PKGNNLTTLNFNGNELVGSVPR--SLLNCANLQVLDL  218 (523)
Q Consensus       150 l~~~~p~~l~~l~~~L~~L~L~~n~-l~~-~~p~~~-------~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L  218 (523)
                      +.+.+|..++.+. +|++|++++|+ +++ .+|..+       ..+++|++|++++|.+. .+|.  .+.++++|++|++
T Consensus       503 l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L  580 (876)
T 4ecn_A          503 NMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC  580 (876)
T ss_dssp             TCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred             CCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence            9999999999998 89999999998 887 677644       45569999999999999 8888  8999999999999


Q ss_pred             CCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCC-CcEEeccCccCCCCCchHHHhccc--ccccccccc
Q 009858          219 GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSK-LRILDLSNNNFTGSLPAMFFKNMK--AMTDIGEAA  295 (523)
Q Consensus       219 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l~--~L~~l~~~~  295 (523)
                      ++|.+. .+| .++.+++|+.|++++|.+. .+|..+  ..+++ |+.|++++|.++ .+|.. +..+.  .|+.++++.
T Consensus       581 s~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~  653 (876)
T 4ecn_A          581 VHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSY  653 (876)
T ss_dssp             TTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCS
T ss_pred             CCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH--hhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcC
Confidence            999998 788 8999999999999999998 555554  56788 999999999998 77743 44444  488888887


Q ss_pred             ccccccc--cCc--c--ccccceEE-----EecchhHHHHHhhcccccccCCCCccCcCcchhhcC--------cccCCe
Q 009858          296 DENKSKY--MGE--T--YYEDSVTL-----IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK--------LHSLRL  356 (523)
Q Consensus       296 ~~~~~~~--~~~--~--~~~~~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~  356 (523)
                      +......  +..  .  .......+     .+.......+..+++|+.|+|++|.++ .+|..+..        +++|++
T Consensus       654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~  732 (876)
T 4ecn_A          654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTT  732 (876)
T ss_dssp             SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCE
T ss_pred             CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccE
Confidence            7653311  110  0  00011111     122344455567889999999999998 66654433        238999


Q ss_pred             eeCcCCcccccCCcccc--CCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC------CcCcccCCCC-CCCCcccC
Q 009858          357 LNLSQNILSGNIPSSLG--DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR------NKLEGRIPEG-NQFATFSS  427 (523)
Q Consensus       357 L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~p~~-~~~~~~~~  427 (523)
                      |+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |.+.+.+|.. ..+..+..
T Consensus       733 L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~  810 (876)
T 4ecn_A          733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ  810 (876)
T ss_dssp             EECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred             EECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence            999999998 7788776  89999999999999997 677888999999999976      7788888854 34566667


Q ss_pred             CccCCCCC
Q 009858          428 DSYGGNLG  435 (523)
Q Consensus       428 ~~~~gn~~  435 (523)
                      +.+.+|..
T Consensus       811 L~Ls~N~L  818 (876)
T 4ecn_A          811 LQIGSNDI  818 (876)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCCC
Confidence            77777754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.5e-33  Score=292.31  Aligned_cols=361  Identities=20%  Similarity=0.236  Sum_probs=222.2

Q ss_pred             hhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccC
Q 009858           47 ELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISN  123 (523)
Q Consensus        47 ~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~  123 (523)
                      +.++++++.+..   +|.... ......++..+.+.......+..+++|++|+|++|.+++..|..   +++|++|++++
T Consensus        34 ~~l~ls~~~L~~---ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTH---VPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCS---CCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCcc---CCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            445555555443   332111 22333444445555555455566666777777777666665543   56666777777


Q ss_pred             CcCCCcCchhhhCCCCcCEEEccCCcCCc-cChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCC--CEEECcCCCC-
Q 009858          124 NKFIGEIPRLICNTSTIEILDLSNNSLSG-TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNL--TTLNFNGNEL-  199 (523)
Q Consensus       124 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~L~~n~l-  199 (523)
                      |.++ .+|..  .+++|++|++++|.+++ .+|..++.+. +|++|++++|.+++.   .+..+++|  ++|++++|.+ 
T Consensus       110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~  182 (562)
T 3a79_B          110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH  182 (562)
T ss_dssp             SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred             CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence            6666 34433  56667777777776663 2345666665 677777776666542   33444444  6666666666 


Q ss_pred             -CCCCCccccCCC--------------------------CCcEEECCCCcC----------------------------C
Q 009858          200 -VGSVPRSLLNCA--------------------------NLQVLDLGNNKM----------------------------K  224 (523)
Q Consensus       200 -~~~~~~~l~~l~--------------------------~L~~L~L~~n~l----------------------------~  224 (523)
                       ++..|..+..+.                          +|+.|++++|..                            .
T Consensus       183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred             ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence             444444443322                          222333322210                            0


Q ss_pred             CC----chHhhhcCCCCCeEEeccccccCcCCCcc---------------------------------------------
Q 009858          225 DT----FPHWLGTLRELQVLILRSNKFYGHLRDYE---------------------------------------------  255 (523)
Q Consensus       225 ~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---------------------------------------------  255 (523)
                      +.    ++..+ ..++|++|++++|.+.+.+|...                                             
T Consensus       263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n  341 (562)
T 3a79_B          263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT  341 (562)
T ss_dssp             HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence            00    00000 01244555555555443333221                                             


Q ss_pred             ------ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcc
Q 009858          256 ------ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI  329 (523)
Q Consensus       256 ------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (523)
                            ....+++|++|++++|.+++.+|. .+.++++|+.++++.+......                .....+..+++
T Consensus       342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~----------------~~~~~~~~l~~  404 (562)
T 3a79_B          342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFF----------------KVALMTKNMSS  404 (562)
T ss_dssp             CCCCCCCCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTT----------------HHHHTTTTCTT
T ss_pred             CcccccCccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcc----------------cchhhhcCCCC
Confidence                  004578999999999999876664 4688899999988876433210                01123455789


Q ss_pred             cccccCCCCccCcCcc-hhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858          330 FTTIDLSKNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS  408 (523)
Q Consensus       330 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  408 (523)
                      |++|++++|.+++.+| ..+..+++|++|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus       405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred             CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence            9999999999997455 4578889999999999999887776554  78999999999998 556666699999999999


Q ss_pred             CCcCcccCCCC--CCCCcccCCccCCCCCCCCCC
Q 009858          409 RNKLEGRIPEG--NQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       409 ~N~l~~~~p~~--~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      +|+++ .+|..  ..+..+....+.+|+..|+++
T Consensus       482 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          482 SNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            99999 56653  455667777788888777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7e-33  Score=276.71  Aligned_cols=309  Identities=19%  Similarity=0.151  Sum_probs=245.8

Q ss_pred             CCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcE
Q 009858           91 PWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRV  167 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~  167 (523)
                      .+++++.|+++++.++..++..   +++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+. +|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCE
Confidence            3588899999999887766543   78999999999998877777888999999999999999866677778887 7999


Q ss_pred             EEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          168 LDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      |++++|.++...+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            99999999865555678899999999999999877777888999999999999988754   256778889999988876


Q ss_pred             cCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhh
Q 009858          248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL  327 (523)
Q Consensus       248 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (523)
                      .+.       ...++|+.|++++|.+. .+|..   ..++|+.+++.++.....                    ..+..+
T Consensus       199 ~~~-------~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--------------------~~l~~l  247 (390)
T 3o6n_A          199 STL-------AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--------------------AWLLNY  247 (390)
T ss_dssp             SEE-------ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--------------------GGGGGC
T ss_pred             ccc-------CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--------------------HHHcCC
Confidence            532       23467888888888886 44432   235667776665533221                    234457


Q ss_pred             cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858          328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL  407 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  407 (523)
                      ++|++|++++|.+++..|..+..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  325 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence            899999999999998888999999999999999999985 5666788999999999999998 45667888999999999


Q ss_pred             CCCcCcccCCCCCCCCcccCCccCCCCCCCC
Q 009858          408 SRNKLEGRIPEGNQFATFSSDSYGGNLGLCG  438 (523)
Q Consensus       408 s~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~  438 (523)
                      ++|+++.. | ...+..+..+.+.+|+..|.
T Consensus       326 ~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          326 DHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcccee-C-chhhccCCEEEcCCCCccch
Confidence            99999854 4 34566777788888877664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.2e-33  Score=293.85  Aligned_cols=343  Identities=19%  Similarity=0.207  Sum_probs=256.8

Q ss_pred             HhhhhhcCCccccccccCCCccchhhhhhh--ccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCCCCCCcEEEc
Q 009858           44 LFLELLAGSTCVVHGLQSHPRNTLKDYASA--AEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLI  121 (523)
Q Consensus        44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L  121 (523)
                      ..+++|++++|.+.++..   ..+..+..+  .++..+.+.......|..+++|++|++++|.++...+..+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRM---PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCG---GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccCh---hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEEC
Confidence            689999999999876543   233333333  445555666676777889999999999999999766666999999999


Q ss_pred             cCCcCCCc-CchhhhCCCCcCEEEccCCcCCccChhhHhhcccCC--cEEEccCCcc--cccCCCCCCCCC---------
Q 009858          122 SNNKFIGE-IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSL--RVLDLRKNRF--HGTIPETFPKGN---------  187 (523)
Q Consensus       122 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L--~~L~L~~n~l--~~~~p~~~~~l~---------  187 (523)
                      ++|.+++. .|..|.++++|++|++++|.+++.   .+..+. +|  ++|++++|.+  ++..|..+..+.         
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~-~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~  204 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA-HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH  204 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT-TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh-hceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence            99999874 468999999999999999999853   344554 56  9999999988  666665554433         


Q ss_pred             ------------------------------------------------------------------------CCCEEECc
Q 009858          188 ------------------------------------------------------------------------NLTTLNFN  195 (523)
Q Consensus       188 ------------------------------------------------------------------------~L~~L~L~  195 (523)
                                                                                              +|++|+++
T Consensus       205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~  284 (562)
T 3a79_B          205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY  284 (562)
T ss_dssp             SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred             CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence                                                                                    56666666


Q ss_pred             CCCCCCCCCccc-----cCCCC--------------------------CcEEECCCCcCCCCchHhhhcCCCCCeEEecc
Q 009858          196 GNELVGSVPRSL-----LNCAN--------------------------LQVLDLGNNKMKDTFPHWLGTLRELQVLILRS  244 (523)
Q Consensus       196 ~n~l~~~~~~~l-----~~l~~--------------------------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  244 (523)
                      +|.+.+.+|..+     ..++.                          |++|++++|.+....  ....+++|++|++++
T Consensus       285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~  362 (562)
T 3a79_B          285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ  362 (562)
T ss_dssp             EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred             ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence            666666666554     33333                          444444444433211  015778899999999


Q ss_pred             ccccCcCCCccccccCCCCcEEeccCccCCCCCch--HHHhccccccccccccccccccccCccccccceEEEecchhHH
Q 009858          245 NKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPA--MFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVK  322 (523)
Q Consensus       245 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (523)
                      |.+.+..+..+  ..+++|++|++++|.+++ ++.  ..+.++++|+.++++.+..... ++.                .
T Consensus       363 n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~----------------~  422 (562)
T 3a79_B          363 NVFTDSVFQGC--STLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSH-AYD----------------R  422 (562)
T ss_dssp             SCCCTTTTTTC--CSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSC-CSS----------------C
T ss_pred             Cccccchhhhh--cccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCCc-cCh----------------h
Confidence            99888777666  678899999999999884 432  3477888999998887754321 111                1


Q ss_pred             HHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCC
Q 009858          323 LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFL  402 (523)
Q Consensus       323 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  402 (523)
                      .+..+++|++|++++|.+++..|..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  499 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL  499 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred             hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence            122368999999999999877776544  79999999999999 677777799999999999999996555459999999


Q ss_pred             CeEECCCCcCcccCCC
Q 009858          403 AVLNLSRNKLEGRIPE  418 (523)
Q Consensus       403 ~~L~Ls~N~l~~~~p~  418 (523)
                      +.|++++|++.+.+|.
T Consensus       500 ~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          500 QYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCEECCSCCBCCCHHH
T ss_pred             CEEEecCCCcCCCcch
Confidence            9999999999987664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6e-34  Score=275.13  Aligned_cols=248  Identities=26%  Similarity=0.412  Sum_probs=209.4

Q ss_pred             CCccEEEccCCCCcc--CCCCC---CCCCcEEEccC-CcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCc
Q 009858           93 KNLEYLDLRSNLLQG--PVPAP---SSNMRVFLISN-NKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLR  166 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~--~~~~~---~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~  166 (523)
                      .++++|+|++|.+++  .+|..   +++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..+. +|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCC
Confidence            589999999999998  67655   89999999995 999999999999999999999999999989999999998 899


Q ss_pred             EEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCC-CCcEEECCCCcCCCCchHhhhcCCCCCeEEeccc
Q 009858          167 VLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCA-NLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN  245 (523)
Q Consensus       167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  245 (523)
                      +|++++|.+++..|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            999999999999999999999999999999999989999999998 999999999999989999999987 999999999


Q ss_pred             cccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHH
Q 009858          246 KFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK  325 (523)
Q Consensus       246 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (523)
                      .+.+..+..+  ..+++|+.|++++|                                                      
T Consensus       208 ~l~~~~~~~~--~~l~~L~~L~L~~N------------------------------------------------------  231 (313)
T 1ogq_A          208 MLEGDASVLF--GSDKNTQKIHLAKN------------------------------------------------------  231 (313)
T ss_dssp             EEEECCGGGC--CTTSCCSEEECCSS------------------------------------------------------
T ss_pred             cccCcCCHHH--hcCCCCCEEECCCC------------------------------------------------------
Confidence            8876555444  34455555555555                                                      


Q ss_pred             hhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858          326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL  405 (523)
Q Consensus       326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  405 (523)
                                   .+++.+|. +..+++|++|+|++|.+++.+|..+..+++|++|+|++|++++.+|.. ..+++|+.+
T Consensus       232 -------------~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l  296 (313)
T 1ogq_A          232 -------------SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS  296 (313)
T ss_dssp             -------------EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred             -------------ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence                         44433333 556677888888888887777877888888888888888888777765 677788888


Q ss_pred             ECCCCcCc
Q 009858          406 NLSRNKLE  413 (523)
Q Consensus       406 ~Ls~N~l~  413 (523)
                      ++++|+..
T Consensus       297 ~l~~N~~l  304 (313)
T 1ogq_A          297 AYANNKCL  304 (313)
T ss_dssp             GTCSSSEE
T ss_pred             HhcCCCCc
Confidence            88888743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.2e-33  Score=292.15  Aligned_cols=365  Identities=18%  Similarity=0.187  Sum_probs=250.1

Q ss_pred             HhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC---CCCCCcEEE
Q 009858           44 LFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA---PSSNMRVFL  120 (523)
Q Consensus        44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~  120 (523)
                      ..+++|++++|.+.+........+.. ....++..+.+.......+..+++|++|++++|.+++..+.   .+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACAN-LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCc-ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            57889999999877654433233322 33344555556666667788899999999999999987765   289999999


Q ss_pred             ccCCcCCCc-CchhhhCCCCcCEEEccCCcCCccCh-hhHhhcccCCcEEEccCCcccccCCCCCCCC------------
Q 009858          121 ISNNKFIGE-IPRLICNTSTIEILDLSNNSLSGTIP-ECIGNFSKSLRVLDLRKNRFHGTIPETFPKG------------  186 (523)
Q Consensus       121 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l------------  186 (523)
                      +++|.+++. .|..+.++++|++|++++|.+.+.+| ..+..+. +|++|++++|.+++..|..+..+            
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999999863 56788999999999999998544665 5778887 89999999999998888887765            


Q ss_pred             ------------CCCCEEECcCCCCCCCC--Ccc-cc-------------------------------------------
Q 009858          187 ------------NNLTTLNFNGNELVGSV--PRS-LL-------------------------------------------  208 (523)
Q Consensus       187 ------------~~L~~L~L~~n~l~~~~--~~~-l~-------------------------------------------  208 (523)
                                  ++|++|++++|++.+..  +.. ..                                           
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence                        45555666666555321  000 00                                           


Q ss_pred             --------------------------------------------CCCCCcEEECCCCcCCCCchHhh-hcCCCCCeEEec
Q 009858          209 --------------------------------------------NCANLQVLDLGNNKMKDTFPHWL-GTLRELQVLILR  243 (523)
Q Consensus       209 --------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~  243 (523)
                                                                  ..++|+.|++++|.+. .+|..+ ..+++|++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred             cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence                                                        0123444444444443 344444 467888888888


Q ss_pred             cccccCcCCCc-cccccCCCCcEEeccCccCCCCCch--HHHhccccccccccccccccccccCccccccceEEEecchh
Q 009858          244 SNKFYGHLRDY-EADYYFSKLRILDLSNNNFTGSLPA--MFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQE  320 (523)
Q Consensus       244 ~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (523)
                      +|.+.+..+.. .....+++|++|++++|.++ .++.  ..+..+++|+.++++.+.................+......
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC
Confidence            88776543211 11245778888888888887 3432  45777888888888877543211100011111111111110


Q ss_pred             HHH--HHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC
Q 009858          321 VKL--MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR  398 (523)
Q Consensus       321 ~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  398 (523)
                      ...  ...+++|++|++++|++++.+    ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++.+|..+..
T Consensus       422 l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  495 (549)
T 2z81_A          422 IRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR  495 (549)
T ss_dssp             CSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred             cccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence            000  011257888888888887542    47889999999999998 6776 567999999999999999999999999


Q ss_pred             CCCCCeEECCCCcCcccCCC
Q 009858          399 LTFLAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       399 l~~L~~L~Ls~N~l~~~~p~  418 (523)
                      +++|+.|++++|++++.+|.
T Consensus       496 l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          496 LTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CTTCCEEECCSSCBCCCHHH
T ss_pred             CcccCEEEecCCCccCCCcc
Confidence            99999999999999988774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-32  Score=288.45  Aligned_cols=308  Identities=19%  Similarity=0.155  Sum_probs=225.4

Q ss_pred             CCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL  168 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L  168 (523)
                      +.+++.|++++|.+...++..   +++|++|++++|.+++..|..|..+++|++|+|++|.+++..|..++.+. +|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEE
Confidence            477888888888887666543   78888888888888877777888888888888888888866666667776 78888


Q ss_pred             EccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858          169 DLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY  248 (523)
Q Consensus       169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  248 (523)
                      +|++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..   ++.+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            88888888665556788888888888888888777777888888888888888877542   556778888888887765


Q ss_pred             CcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhc
Q 009858          249 GHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT  328 (523)
Q Consensus       249 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (523)
                      +.       ...++|+.|++++|.+. .++...   .+.|+.|+++++....                    ...+..++
T Consensus       206 ~l-------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--------------------~~~l~~l~  254 (597)
T 3oja_B          206 TL-------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--------------------TAWLLNYP  254 (597)
T ss_dssp             EE-------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--------------------CGGGGGCT
T ss_pred             cc-------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--------------------ChhhccCC
Confidence            32       23456777788777776 333222   2456666665543221                    12234477


Q ss_pred             ccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858          329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS  408 (523)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  408 (523)
                      +|+.|+|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+++
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD  332 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred             CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence            88888888888887778888888888888888888875 5666677888888888888888 456667778888888888


Q ss_pred             CCcCcccCCCCCCCCcccCCccCCCCCCCC
Q 009858          409 RNKLEGRIPEGNQFATFSSDSYGGNLGLCG  438 (523)
Q Consensus       409 ~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~  438 (523)
                      +|++++. | ...+..+..+.+.+|+..|.
T Consensus       333 ~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          333 HNSIVTL-K-LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCc-C-hhhcCCCCEEEeeCCCCCCh
Confidence            8888754 3 23455666677777776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=283.37  Aligned_cols=327  Identities=22%  Similarity=0.224  Sum_probs=179.2

Q ss_pred             CCccEEEccCCCCccCCCC---CCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           93 KNLEYLDLRSNLLQGPVPA---PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      ++|++|++++|.+++..|.   .+++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..  .+. +|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~-~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTV-NLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCC-CCSEEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccC-CccEEe
Confidence            5666666666666655542   2666666666666666655666666666666666666666 55555  444 566666


Q ss_pred             ccCCcccc-cCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCC--cEEECCCCcC--CCCchHhhhc-----------
Q 009858          170 LRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL--QVLDLGNNKM--KDTFPHWLGT-----------  233 (523)
Q Consensus       170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~-----------  233 (523)
                      +++|.+++ ..|..|+++++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+..           
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            66666664 245566666666666666666653   345555555  6666666666  4444444333           


Q ss_pred             ---------------CCCCCeEEecccc-------ccCcCCCcccccc---------------------------CCCCc
Q 009858          234 ---------------LRELQVLILRSNK-------FYGHLRDYEADYY---------------------------FSKLR  264 (523)
Q Consensus       234 ---------------l~~L~~L~l~~n~-------l~~~~~~~~~~~~---------------------------l~~L~  264 (523)
                                     +++|+.|++++|.       +.+.++   ....                           .++|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA---KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchh---hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence                           2222222222221       100000   0011                           12444


Q ss_pred             EEeccCccCCCCCchHHH----hccccccccccccccccccccCcccc--------ccceEEEecchh-HHHHHhhcccc
Q 009858          265 ILDLSNNNFTGSLPAMFF----KNMKAMTDIGEAADENKSKYMGETYY--------EDSVTLIIKRQE-VKLMKILTIFT  331 (523)
Q Consensus       265 ~L~l~~n~l~~~~p~~~~----~~l~~L~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~L~  331 (523)
                      +|++++|.+.+.+|..++    ..++.|+.+++..+..   .++....        ............ ...+..+++|+
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~  327 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL  327 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence            444444444444443322    3344444444333322   0000000        000000000000 00013467788


Q ss_pred             cccCCCCccCcCcchhhcCcccCCeeeCcCCcccc--cCCccccCCCCCCEEeCCCCcCCCcCCh-hhcCCCCCCeEECC
Q 009858          332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG--NIPSSLGDLTDLESLDLSSNVLDGVIPR-ELTRLTFLAVLNLS  408 (523)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls  408 (523)
                      +|++++|.+++..|..+..+++|++|++++|++++  .+|..++.+++|++|++++|.+++.+|. .+..+++|++|+++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            88888888887777778888888888888888875  4556677888888888888888774444 46777778888888


Q ss_pred             CCcCcccCCCCCCCCcccCCccCCC
Q 009858          409 RNKLEGRIPEGNQFATFSSDSYGGN  433 (523)
Q Consensus       409 ~N~l~~~~p~~~~~~~~~~~~~~gn  433 (523)
                      +|.+++.+|.... ..+..+.+.+|
T Consensus       408 ~N~l~~~~~~~l~-~~L~~L~Ls~N  431 (520)
T 2z7x_B          408 SNILTDTIFRCLP-PRIKVLDLHSN  431 (520)
T ss_dssp             SSCCCGGGGGSCC-TTCCEEECCSS
T ss_pred             CCCCCcchhhhhc-ccCCEEECCCC
Confidence            8887766654321 34444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-31  Score=262.95  Aligned_cols=279  Identities=25%  Similarity=0.359  Sum_probs=153.0

Q ss_pred             CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      +++|++|++++|.+++..+.. +++|++|++++|.++..  +.+.++++|++|++++|.++ .++. +..+. +|++|++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~-~L~~L~l  139 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS-DISP-LANLT-KMYSLNL  139 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCC-CCGG-GTTCT-TCCEEEC
T ss_pred             cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCccc-Cchh-hccCC-ceeEEEC
Confidence            456666666666655444322 56666666666655532  24556666666666666665 3333 44554 5666666


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.
T Consensus       140 ~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             TTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCC
Confidence            6664432222 25556666666666665553222  5556666666666666553322  55566666666666655443


Q ss_pred             CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF  330 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  330 (523)
                      .+    ...+++|++|++++|.+++ ++.  +..                                          +++|
T Consensus       215 ~~----~~~~~~L~~L~l~~n~l~~-~~~--~~~------------------------------------------l~~L  245 (347)
T 4fmz_A          215 TP----VANMTRLNSLKIGNNKITD-LSP--LAN------------------------------------------LSQL  245 (347)
T ss_dssp             GG----GGGCTTCCEEECCSSCCCC-CGG--GTT------------------------------------------CTTC
T ss_pred             ch----hhcCCcCCEEEccCCccCC-Ccc--hhc------------------------------------------CCCC
Confidence            32    2445566666666665552 221  333                                          4556


Q ss_pred             ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCC
Q 009858          331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN  410 (523)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  410 (523)
                      ++|++++|.+++ + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            666666666653 2 3455666666666666666532  23556666666666666666666666666666666666666


Q ss_pred             cCcccCCCCCCCCcccCCccCCCC
Q 009858          411 KLEGRIPEGNQFATFSSDSYGGNL  434 (523)
Q Consensus       411 ~l~~~~p~~~~~~~~~~~~~~gn~  434 (523)
                      ++++..| ...+..+....+.+|+
T Consensus       322 ~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          322 HITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             ccccccC-hhhhhccceeehhhhc
Confidence            6665444 3344445555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-32  Score=272.50  Aligned_cols=319  Identities=19%  Similarity=0.219  Sum_probs=256.6

Q ss_pred             cCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccCh
Q 009858           79 SDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP  155 (523)
Q Consensus        79 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  155 (523)
                      +.+..+....+..+++|++|++++|.+++..+..   +++|++|++++|.+++..|..|.++++|++|++++|.++ .+|
T Consensus        55 ~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~  133 (390)
T 3o6n_A           55 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP  133 (390)
T ss_dssp             CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCC
Confidence            3333333333456799999999999999877643   899999999999999888888999999999999999999 677


Q ss_pred             hhH-hhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcC
Q 009858          156 ECI-GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTL  234 (523)
Q Consensus       156 ~~l-~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  234 (523)
                      ..+ ..+. +|++|++++|.+++..|..|..+++|++|++++|.+++.   .+..+++|++|++++|.+.+     +...
T Consensus       134 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~  204 (390)
T 3o6n_A          134 RGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIP  204 (390)
T ss_dssp             TTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECC
T ss_pred             HHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCC
Confidence            664 6776 899999999999988888899999999999999999854   35678999999999998874     2345


Q ss_pred             CCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEE
Q 009858          235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTL  314 (523)
Q Consensus       235 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (523)
                      ++|++|++++|.+.....     ...++|+.|++++|.+++.   ..+..++.|+.++++++.....             
T Consensus       205 ~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~-------------  263 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI-------------  263 (390)
T ss_dssp             SSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE-------------
T ss_pred             CcceEEECCCCeeeeccc-----cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCc-------------
Confidence            689999999998865532     2357899999999999853   3578889999999887643221             


Q ss_pred             EecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCCh
Q 009858          315 IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPR  394 (523)
Q Consensus       315 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  394 (523)
                           ....+..+++|+.|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.+++..  
T Consensus       264 -----~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--  334 (390)
T 3o6n_A          264 -----MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--  334 (390)
T ss_dssp             -----ESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred             -----ChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--
Confidence                 1223445889999999999998 56777788999999999999998 57777889999999999999998653  


Q ss_pred             hhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCC
Q 009858          395 ELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGF  439 (523)
Q Consensus       395 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~  439 (523)
                       +..+++|+.|++++|++++.... ..+..+....+.+++..|..
T Consensus       335 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          335 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             -chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence             67789999999999999865322 23444555556666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.4e-31  Score=260.21  Aligned_cols=281  Identities=21%  Similarity=0.295  Sum_probs=231.1

Q ss_pred             CCCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           91 PWKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      .+++|++|+++++.+....... +++|++|++++|.++...+  +..+++|++|++++|.++ .+| .+..+. +|++|+
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~~l~-~L~~L~  116 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQNLT-NLRELY  116 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCT-TCSEEE
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHcCCC-cCCEEE
Confidence            3589999999999998654322 8999999999999986544  889999999999999998 555 578887 899999


Q ss_pred             ccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858          170 LRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      +++|.+++..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+
T Consensus       117 l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             CTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred             CcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence            99999985543  8899999999999997664444 48899999999999999886544  8899999999999998875


Q ss_pred             cCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcc
Q 009858          250 HLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI  329 (523)
Q Consensus       250 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (523)
                      ..+    ...+++|+.|++++|.+.+..+   +                                          ..+++
T Consensus       192 ~~~----~~~l~~L~~L~l~~n~l~~~~~---~------------------------------------------~~~~~  222 (347)
T 4fmz_A          192 ISP----LASLTSLHYFTAYVNQITDITP---V------------------------------------------ANMTR  222 (347)
T ss_dssp             CGG----GGGCTTCCEEECCSSCCCCCGG---G------------------------------------------GGCTT
T ss_pred             ccc----ccCCCccceeecccCCCCCCch---h------------------------------------------hcCCc
Confidence            543    3678999999999998874322   1                                          22688


Q ss_pred             cccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858          330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSR  409 (523)
Q Consensus       330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  409 (523)
                      |++|++++|.+++..+  +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.  ..+..+++|+.|++++
T Consensus       223 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~  296 (347)
T 4fmz_A          223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN  296 (347)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence            9999999999995444  8899999999999999985 3 4689999999999999999975  4688999999999999


Q ss_pred             CcCcccCCCC-CCCCcccCCccCCCCCC
Q 009858          410 NKLEGRIPEG-NQFATFSSDSYGGNLGL  436 (523)
Q Consensus       410 N~l~~~~p~~-~~~~~~~~~~~~gn~~l  436 (523)
                      |++++..|.. ..+..+....+.+|+..
T Consensus       297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          297 NQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             SCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CcCCCcChhHhhccccCCEEEccCCccc
Confidence            9998776542 34556777777887643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=3.5e-32  Score=286.33  Aligned_cols=320  Identities=19%  Similarity=0.218  Sum_probs=261.6

Q ss_pred             cCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccCh
Q 009858           79 SDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP  155 (523)
Q Consensus        79 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  155 (523)
                      +.+..+....+..+++|++|+|++|.+++..+..   +++|++|+|++|.+++..|..|+++++|++|+|++|.++ .+|
T Consensus        61 ~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~  139 (597)
T 3oja_B           61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP  139 (597)
T ss_dssp             CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCC
Confidence            3333444434556799999999999999887744   899999999999999988888999999999999999999 566


Q ss_pred             hh-HhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcC
Q 009858          156 EC-IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTL  234 (523)
Q Consensus       156 ~~-l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  234 (523)
                      .. +..+. +|++|++++|.+++..|..|..+++|++|++++|.+++.   .+..+++|+.|++++|.+.+     +...
T Consensus       140 ~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~  210 (597)
T 3oja_B          140 RGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIP  210 (597)
T ss_dssp             TTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECC
T ss_pred             HHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCC
Confidence            55 57777 899999999999998888999999999999999999864   35678999999999998874     3345


Q ss_pred             CCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEE
Q 009858          235 RELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTL  314 (523)
Q Consensus       235 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (523)
                      ++|+.|++++|.+....+..     .++|+.|++++|.+++.   ..+..++.|+.|+++++.....             
T Consensus       211 ~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~-------------  269 (597)
T 3oja_B          211 IAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI-------------  269 (597)
T ss_dssp             TTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE-------------
T ss_pred             chhheeeccCCccccccccc-----CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCC-------------
Confidence            78999999999886544322     46899999999999853   4578889999999887643221             


Q ss_pred             EecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCCh
Q 009858          315 IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPR  394 (523)
Q Consensus       315 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  394 (523)
                           ....+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..  
T Consensus       270 -----~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--  340 (597)
T 3oja_B          270 -----MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--  340 (597)
T ss_dssp             -----ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred             -----CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--
Confidence                 12234558999999999999994 6777788999999999999999 67888899999999999999998663  


Q ss_pred             hhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 009858          395 ELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       395 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~  440 (523)
                       +..+++|+.|++++|++++..+. ..+..+....+.++...|+.+
T Consensus       341 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          341 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             -hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence             66788999999999999976432 345566666778888888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=6.2e-31  Score=256.41  Aligned_cols=269  Identities=20%  Similarity=0.221  Sum_probs=221.3

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      .+++.++++++.++..+....++++.|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|++++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~  109 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSK  109 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCS
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCEEECCC
Confidence            4789999999999876555578999999999999988888899999999999999999976788999987 899999999


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC--CchHhhhcCCCCCeEEeccccccCc
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD--TFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      |.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.+.+.
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            9998 5565554  689999999999998777889999999999999999863  6678899999999999999998754


Q ss_pred             CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF  330 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  330 (523)
                      . ...    .++|++|++++|.+++..|.. +..                                          +++|
T Consensus       187 ~-~~~----~~~L~~L~l~~n~l~~~~~~~-~~~------------------------------------------l~~L  218 (330)
T 1xku_A          187 P-QGL----PPSLTELHLDGNKITKVDAAS-LKG------------------------------------------LNNL  218 (330)
T ss_dssp             C-SSC----CTTCSEEECTTSCCCEECTGG-GTT------------------------------------------CTTC
T ss_pred             C-ccc----cccCCEEECCCCcCCccCHHH-hcC------------------------------------------CCCC
Confidence            3 322    379999999999988443322 222                                          5677


Q ss_pred             ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC------CCCCCe
Q 009858          331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR------LTFLAV  404 (523)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~  404 (523)
                      +.|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.++.
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~  297 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG  297 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccc
Confidence            88888888888766677888888888888888888 67777888888888888888888776666643      367888


Q ss_pred             EECCCCcCcc
Q 009858          405 LNLSRNKLEG  414 (523)
Q Consensus       405 L~Ls~N~l~~  414 (523)
                      +++++|++..
T Consensus       298 l~l~~N~~~~  307 (330)
T 1xku_A          298 VSLFSNPVQY  307 (330)
T ss_dssp             EECCSSSSCG
T ss_pred             eEeecCcccc
Confidence            8888888763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.98  E-value=6.6e-31  Score=268.54  Aligned_cols=342  Identities=21%  Similarity=0.287  Sum_probs=224.7

Q ss_pred             HHHhhhhhcCCccccccccCCCccchhhhhhhc--cccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC-CCCCcE
Q 009858           42 VLLFLELLAGSTCVVHGLQSHPRNTLKDYASAA--EFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP-SSNMRV  118 (523)
Q Consensus        42 ~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~L~~  118 (523)
                      .+..++.|++.+|.+..+..     +.....+.  ++..+.+.....  +..+++|++|++++|.+++..+.. +++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~-----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT-----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             HhccccEEecCCCCCccCcc-----hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCE
Confidence            45667777777776554332     11222222  222233333322  455667777777777766655422 667777


Q ss_pred             EEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCC
Q 009858          119 FLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE  198 (523)
Q Consensus       119 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  198 (523)
                      |++++|.+++..+  +.++++|++|++++|.++ .++ .+..+. +|++|+++ |.+.+..  .+..+++|++|++++|.
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~~~~l~-~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLT-SLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCG-GGTTCT-TCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CCh-hhccCC-cccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence            7777776664432  666777777777777766 344 355555 67777665 3333222  26677778888888887


Q ss_pred             CCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCc
Q 009858          199 LVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLP  278 (523)
Q Consensus       199 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  278 (523)
                      +.+.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+.+.    .....+++|+.|++++|.+.+..+
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAP  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchh
Confidence            7643  346777888888888887776544  66777888888888776543    122557788888888887774433


Q ss_pred             hHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeee
Q 009858          279 AMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLN  358 (523)
Q Consensus       279 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  358 (523)
                         +..++.|+.++++.+.....                    ..+..+++|+.|++++|.+++..+  +..+++|++|+
T Consensus       261 ---~~~l~~L~~L~l~~n~l~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          261 ---LSGLTKLTELKLGANQISNI--------------------SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             ---GTTCTTCSEEECCSSCCCCC--------------------GGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             ---hhcCCCCCEEECCCCccCcc--------------------ccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence               66777777777765533211                    013447888888888888885444  67788888888


Q ss_pred             CcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCCCC
Q 009858          359 LSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGL  436 (523)
Q Consensus       359 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~l  436 (523)
                      |++|++++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..| ...+..+....+.+|+..
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence            88888886554  67888888888888888865  467888888888888888887776 455666666667777543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.98  E-value=5.6e-31  Score=280.11  Aligned_cols=367  Identities=20%  Similarity=0.183  Sum_probs=254.3

Q ss_pred             hhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCC
Q 009858           72 SAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNN  148 (523)
Q Consensus        72 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  148 (523)
                      .+.......+|..++      +++++|||++|+|++..+..   +++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus        37 ~c~~~~l~~vP~~lp------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           37 QCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             ECTTSCCSSCCSSSC------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ECCCCCcCccCCCCC------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            455556667776554      68999999999999887754   899999999999999888889999999999999999


Q ss_pred             cCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCC-CCCccccCCCCCcEEECCCCcCCCCc
Q 009858          149 SLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG-SVPRSLLNCANLQVLDLGNNKMKDTF  227 (523)
Q Consensus       149 ~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~  227 (523)
                      ++++..+..|..+. +|++|++++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..
T Consensus       111 ~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          111 PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CCCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             cCCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            99954455678887 89999999999998777889999999999999999975 45788899999999999999988766


Q ss_pred             hHhhhcCCCCC----eEEeccccccCcCCCc-------------------------------------------------
Q 009858          228 PHWLGTLRELQ----VLILRSNKFYGHLRDY-------------------------------------------------  254 (523)
Q Consensus       228 ~~~l~~l~~L~----~L~l~~n~l~~~~~~~-------------------------------------------------  254 (523)
                      +..+..+.+++    .++++.|.+....+..                                                 
T Consensus       190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  269 (635)
T 4g8a_A          190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  269 (635)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence            66554433222    2333332221100000                                                 


Q ss_pred             ----------------------------------------------------cccccCCCCcEEeccCccCCCCCchHH-
Q 009858          255 ----------------------------------------------------EADYYFSKLRILDLSNNNFTGSLPAMF-  281 (523)
Q Consensus       255 ----------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~-  281 (523)
                                                                          .......+++.|++.+|.+.+ ++... 
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l  348 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPTLKL  348 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-CCCCBC
T ss_pred             ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-cCcccc
Confidence                                                                000112234444444444331 11000 


Q ss_pred             ------------------HhccccccccccccccccccccC--------------------------ccccccceEE---
Q 009858          282 ------------------FKNMKAMTDIGEAADENKSKYMG--------------------------ETYYEDSVTL---  314 (523)
Q Consensus       282 ------------------~~~l~~L~~l~~~~~~~~~~~~~--------------------------~~~~~~~~~~---  314 (523)
                                        ...++.|+.++++.+........                          ..........   
T Consensus       349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~  428 (635)
T 4g8a_A          349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ  428 (635)
T ss_dssp             TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECT
T ss_pred             hhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhh
Confidence                              11233444444433322110000                          0000000000   


Q ss_pred             ---EecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCccc-ccCCccccCCCCCCEEeCCCCcCCC
Q 009858          315 ---IIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS-GNIPSSLGDLTDLESLDLSSNVLDG  390 (523)
Q Consensus       315 ---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~  390 (523)
                         .........+..+++++.++++.|.+.+..+..+..+++|+.|+|++|.+. +..|..|..+++|++|+|++|++++
T Consensus       429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence               111122234556788999999999999888899999999999999999754 4678899999999999999999999


Q ss_pred             cCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCCCC-------------------CCCCCCCCCCCC
Q 009858          391 VIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNL-------------------GLCGFPLSKNCS  446 (523)
Q Consensus       391 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~-------------------~lc~~~~~~~c~  446 (523)
                      ..|..|.++++|++|+|++|++++..|.. ..+..+..+.+.+|.                   .+.++|+.|+|.
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999999999999999776642 223334333333332                   245678888885

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=3.3e-31  Score=258.50  Aligned_cols=267  Identities=20%  Similarity=0.220  Sum_probs=216.0

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      .+++.++++++.++..+....++|+.|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|++++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~  111 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISK  111 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCCEEECCS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-CCCEEECCC
Confidence            4789999999999866555588999999999999988888899999999999999999977788898887 899999999


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC--CchHhhhcCCCCCeEEeccccccCc
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD--TFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      |.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+..+..+ +|+.|++++|.+.+.
T Consensus       112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            9998 5565554  789999999999997767779999999999999999863  567777777 999999999998764


Q ss_pred             CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF  330 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  330 (523)
                      . ...    .++|++|++++|.+++..+ ..+..                                          +++|
T Consensus       188 ~-~~~----~~~L~~L~l~~n~i~~~~~-~~l~~------------------------------------------l~~L  219 (332)
T 2ft3_A          188 P-KDL----PETLNELHLDHNKIQAIEL-EDLLR------------------------------------------YSKL  219 (332)
T ss_dssp             C-SSS----CSSCSCCBCCSSCCCCCCT-TSSTT------------------------------------------CTTC
T ss_pred             C-ccc----cCCCCEEECCCCcCCccCH-HHhcC------------------------------------------CCCC
Confidence            3 322    3789999999999884333 22222                                          5677


Q ss_pred             ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCC------CCCCe
Q 009858          331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL------TFLAV  404 (523)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l------~~L~~  404 (523)
                      +.|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|...      +.|+.
T Consensus       220 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~  298 (332)
T 2ft3_A          220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG  298 (332)
T ss_dssp             SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred             CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence            88888888888666667778888888888888887 677778888888888888888887766666543      56788


Q ss_pred             EECCCCcCc
Q 009858          405 LNLSRNKLE  413 (523)
Q Consensus       405 L~Ls~N~l~  413 (523)
                      |++++|++.
T Consensus       299 L~l~~N~~~  307 (332)
T 2ft3_A          299 ISLFNNPVP  307 (332)
T ss_dssp             EECCSSSSC
T ss_pred             eEeecCccc
Confidence            888888876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=6.9e-30  Score=260.97  Aligned_cols=323  Identities=22%  Similarity=0.272  Sum_probs=260.6

Q ss_pred             HHHHHhhhhhcCCccccccccCCCccchhhhhhhccccc--cCCCcccCCCCCCCCCccEEEccCCCCccCCCCC-CCCC
Q 009858           40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEA--SDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP-SSNM  116 (523)
Q Consensus        40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~L  116 (523)
                      +..+..|++|++++|.+.++..     +..+..+..+..  +.+.....  +..+++|++|++++|.+++..+.. +++|
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L  136 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL  136 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             hhhhcCCCEEECCCCccCCchh-----hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCC
Confidence            4557789999999998877543     333333433333  33333333  677899999999999998876533 9999


Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG  196 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (523)
                      ++|++++|.+.+. + .+..+++|++|+++ |.+. .++. +..+. +|++|++++|.+++. + .+..+++|++|++++
T Consensus       137 ~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~-~~~~-~~~l~-~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~  208 (466)
T 1o6v_A          137 NRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVT-DLKP-LANLT-TLERLDISSNKVSDI-S-VLAKLTNLESLIATN  208 (466)
T ss_dssp             SEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCC-CCGG-GTTCT-TCCEEECCSSCCCCC-G-GGGGCTTCSEEECCS
T ss_pred             CEEECCCCccCCC-h-hhccCCcccEeecC-Cccc-Cchh-hccCC-CCCEEECcCCcCCCC-h-hhccCCCCCEEEecC
Confidence            9999999998853 3 58899999999997 5555 3333 77887 899999999999854 2 478899999999999


Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC
Q 009858          197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS  276 (523)
Q Consensus       197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  276 (523)
                      |.+.+..|  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+    ...+++|+.|++++|.+.+ 
T Consensus       209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-  279 (466)
T 1o6v_A          209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISN-  279 (466)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCC-
T ss_pred             Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCc-
Confidence            99986544  77899999999999998853  468899999999999999876654    3678999999999999985 


Q ss_pred             CchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCe
Q 009858          277 LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRL  356 (523)
Q Consensus       277 ~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  356 (523)
                      ++.  +..++.|+.++++.+.....                    ..+..+++|+.|++++|.+++..|  +..+++|++
T Consensus       280 ~~~--~~~l~~L~~L~L~~n~l~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          280 ISP--LAGLTALTNLELNENQLEDI--------------------SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             CGG--GTTCTTCSEEECCSSCCSCC--------------------GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             ccc--ccCCCccCeEEcCCCcccCc--------------------hhhcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            443  77889999999887643221                    113458999999999999997666  778999999


Q ss_pred             eeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          357 LNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       357 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      |++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999999964  468999999999999999998876  8899999999999999996

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=7.1e-31  Score=258.46  Aligned_cols=279  Identities=17%  Similarity=0.156  Sum_probs=195.8

Q ss_pred             CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858           94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n  173 (523)
                      .....+++++.++..+....++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|++++|
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n  110 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYN  110 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred             CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCC
Confidence            334467777777765554566777777777777766666777777777777777777755566677776 6777777777


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEECCCCc-CCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVP-RSLLNCANLQVLDLGNNK-MKDTFPHWLGTLRELQVLILRSNKFYGHL  251 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  251 (523)
                      ++++..+..|.++++|++|++++|++.+..+ ..+.++++|++|++++|. +....+..+..+++|++|++++|.+.+..
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (353)
T 2z80_A          111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE  190 (353)
T ss_dssp             CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence            7775444446777777777777777774333 367777777888777773 55445566777777888888877777665


Q ss_pred             CCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccc
Q 009858          252 RDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT  331 (523)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  331 (523)
                      +..+  ..+++|++|++++|.+. .+|..++.                                          .+++|+
T Consensus       191 ~~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~------------------------------------------~~~~L~  225 (353)
T 2z80_A          191 PKSL--KSIQNVSHLILHMKQHI-LLLEIFVD------------------------------------------VTSSVE  225 (353)
T ss_dssp             TTTT--TTCSEEEEEEEECSCST-THHHHHHH------------------------------------------HTTTEE
T ss_pred             HHHH--hccccCCeecCCCCccc-cchhhhhh------------------------------------------hccccc
Confidence            6555  55777888888887765 44443322                                          256677


Q ss_pred             cccCCCCccCcCcchhh---cCcccCCeeeCcCCcccc----cCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCe
Q 009858          332 TIDLSKNSFHGEIPELM---GKLHSLRLLNLSQNILSG----NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAV  404 (523)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  404 (523)
                      .|++++|.+++..+..+   .....++.++|+++.+.+    .+|..+..+++|++|+|++|+++...+..|..+++|++
T Consensus       226 ~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  305 (353)
T 2z80_A          226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK  305 (353)
T ss_dssp             EEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence            77777777775444332   234567777777777765    46777888999999999999999655555688999999


Q ss_pred             EECCCCcCcccCCC
Q 009858          405 LNLSRNKLEGRIPE  418 (523)
Q Consensus       405 L~Ls~N~l~~~~p~  418 (523)
                      |++++|++++..|.
T Consensus       306 L~L~~N~~~~~~~~  319 (353)
T 2z80_A          306 IWLHTNPWDCSCPR  319 (353)
T ss_dssp             EECCSSCBCCCHHH
T ss_pred             EEeeCCCccCcCCC
Confidence            99999999887663

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=4.2e-29  Score=253.34  Aligned_cols=307  Identities=19%  Similarity=0.171  Sum_probs=170.0

Q ss_pred             HHHHHHhhhhhcCCccccccccCCCccchhhhhhhc--cccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCCCCCC
Q 009858           39 FVYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAA--EFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNM  116 (523)
Q Consensus        39 ~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L  116 (523)
                      .+..+..|++|++++|.+.+++     .+..+..+.  ++..+.+...   .+..+++|++|++++|.+++.....+++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT-----GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNLDVTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT-----TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCcccCh-----hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCceeecCCCCcC
Confidence            4666788888888888776542     122222222  2222222222   14455666666666666665433336666


Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG  196 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (523)
                      ++|++++|.+++. +  +..+++|++|++++|++++ ++  ++.+. +|++|++++|...+.+  .+..+++|++|++++
T Consensus       109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VSHNT-QLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CTTCT-TCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cccCC-cCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            6666666666542 2  5566666666666666663 32  44554 5666666666433333  355666666666666


Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC
Q 009858          197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS  276 (523)
Q Consensus       197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  276 (523)
                      |++++ +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|.+.+. |    ...+++|+.|++++|.+++ 
T Consensus       180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p----~~~l~~L~~L~l~~N~l~~-  247 (457)
T 3bz5_A          180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D----VTPLTQLTYFDCSVNPLTE-  247 (457)
T ss_dssp             SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSC-
T ss_pred             Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C----ccccCCCCEEEeeCCcCCC-
Confidence            66654 33  55666666666666666543   255666666666666666552 2    1445666666666666653 


Q ss_pred             CchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCe
Q 009858          277 LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRL  356 (523)
Q Consensus       277 ~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  356 (523)
                      +|   ...++.|+.+.+.                                ..+|+.|++++|.+.+.+|  +..+++|+.
T Consensus       248 ~~---~~~l~~L~~L~l~--------------------------------~n~L~~L~l~~n~~~~~~~--~~~l~~L~~  290 (457)
T 3bz5_A          248 LD---VSTLSKLTTLHCI--------------------------------QTDLLEIDLTHNTQLIYFQ--AEGCRKIKE  290 (457)
T ss_dssp             CC---CTTCTTCCEEECT--------------------------------TCCCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred             cC---HHHCCCCCEEecc--------------------------------CCCCCEEECCCCccCCccc--ccccccCCE
Confidence            33   1233333333332                                2345555666665555554  345566666


Q ss_pred             eeCcCCcccccCCc--------cccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          357 LNLSQNILSGNIPS--------SLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       357 L~Ls~n~l~~~~p~--------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      |++++|...+.+|.        .+..+++|++|++++|++++. +  +..+++|+.|++++|++++
T Consensus       291 L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             EECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence            66666654444332        134445666666666666653 2  5566666666666666664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.3e-29  Score=243.35  Aligned_cols=268  Identities=22%  Similarity=0.269  Sum_probs=223.8

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL  192 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (523)
                      ..+++.++++++.++ .+|..+  .++|++|++++|++++..+..+..+. +|++|++++|.+++..|..|..+++|++|
T Consensus        30 ~c~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           30 QCHLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EEETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cCCCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            447899999999988 455554  36899999999999965566788887 89999999999998889999999999999


Q ss_pred             ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC--cCCCccccccCCCCcEEeccC
Q 009858          193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG--HLRDYEADYYFSKLRILDLSN  270 (523)
Q Consensus       193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~  270 (523)
                      ++++|.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+  ..+++|++|++++
T Consensus       106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~  180 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF--QGMKKLSYIRIAD  180 (330)
T ss_dssp             ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG--GGCTTCCEEECCS
T ss_pred             ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc--cCCCCcCEEECCC
Confidence            99999998 5665554  899999999999998888889999999999999999864  334444  6789999999999


Q ss_pred             ccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858          271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK  350 (523)
Q Consensus       271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  350 (523)
                      |.++ .+|...                                             .++|++|++++|.+++..|..+..
T Consensus       181 n~l~-~l~~~~---------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~  214 (330)
T 1xku_A          181 TNIT-TIPQGL---------------------------------------------PPSLTELHLDGNKITKVDAASLKG  214 (330)
T ss_dssp             SCCC-SCCSSC---------------------------------------------CTTCSEEECTTSCCCEECTGGGTT
T ss_pred             Cccc-cCCccc---------------------------------------------cccCCEEECCCCcCCccCHHHhcC
Confidence            9987 455321                                             367899999999999888899999


Q ss_pred             cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC-------CCC
Q 009858          351 LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN-------QFA  423 (523)
Q Consensus       351 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-------~~~  423 (523)
                      +++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+...       ...
T Consensus       215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~  293 (330)
T 1xku_A          215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA  293 (330)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence            999999999999999888888999999999999999999 677889999999999999999995443321       123


Q ss_pred             cccCCccCCCCCC
Q 009858          424 TFSSDSYGGNLGL  436 (523)
Q Consensus       424 ~~~~~~~~gn~~l  436 (523)
                      .+....+.||+..
T Consensus       294 ~l~~l~l~~N~~~  306 (330)
T 1xku_A          294 SYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCSEEECCSSSSC
T ss_pred             cccceEeecCccc
Confidence            3444556666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=9e-29  Score=251.68  Aligned_cols=251  Identities=21%  Similarity=0.194  Sum_probs=185.8

Q ss_pred             CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858           94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n  173 (523)
                      ..+.++.++..++..+....++++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..+. +|++|+|++|
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n  133 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDN  133 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCC
Confidence            346788888888765555567888888888888877777888888888888888888766666777776 7888888888


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCC
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      .+++..+..|..+++|++|++++|++....+..|.++++|++|++++|...+.++ ..+..+++|+.|++++|.+.+   
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---  210 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---  210 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence            8876666667777888888888887776656677777777777777743333332 245555555555555554432   


Q ss_pred             CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT  332 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  332 (523)
                                              +|.  +                                          ..+++|+.
T Consensus       211 ------------------------~~~--~------------------------------------------~~l~~L~~  222 (452)
T 3zyi_A          211 ------------------------MPN--L------------------------------------------TPLVGLEE  222 (452)
T ss_dssp             ------------------------CCC--C------------------------------------------TTCTTCCE
T ss_pred             ------------------------ccc--c------------------------------------------cccccccE
Confidence                                    221  0                                          01466777


Q ss_pred             ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858          333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      |+|++|.+++..|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++
T Consensus       223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            78888888777788888888999999999999888888888899999999999999888888888889999999999988


Q ss_pred             cccC
Q 009858          413 EGRI  416 (523)
Q Consensus       413 ~~~~  416 (523)
                      .+..
T Consensus       303 ~CdC  306 (452)
T 3zyi_A          303 NCDC  306 (452)
T ss_dssp             ECST
T ss_pred             CCCC
Confidence            7554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=7.4e-29  Score=241.86  Aligned_cols=266  Identities=23%  Similarity=0.259  Sum_probs=220.8

Q ss_pred             CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEE
Q 009858          114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN  193 (523)
Q Consensus       114 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  193 (523)
                      .+++.++++++.++ .+|..+  .++|++|++++|.+++..|..+..+. +|++|++++|.+++..|..|.++++|++|+
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            47899999999988 556555  36899999999999966677888887 899999999999988888999999999999


Q ss_pred             CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC--cCCCccccccCCCCcEEeccCc
Q 009858          194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG--HLRDYEADYYFSKLRILDLSNN  271 (523)
Q Consensus       194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n  271 (523)
                      +++|.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+  ..+ +|++|++++|
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEA  182 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSS
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCC
Confidence            9999998 5665554  899999999999997777789999999999999999853  444444  344 8999999999


Q ss_pred             cCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCc
Q 009858          272 NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKL  351 (523)
Q Consensus       272 ~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  351 (523)
                      .++ .+|..+                                             .++|++|++++|.+++..+..+..+
T Consensus       183 ~l~-~l~~~~---------------------------------------------~~~L~~L~l~~n~i~~~~~~~l~~l  216 (332)
T 2ft3_A          183 KLT-GIPKDL---------------------------------------------PETLNELHLDHNKIQAIELEDLLRY  216 (332)
T ss_dssp             BCS-SCCSSS---------------------------------------------CSSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred             CCC-ccCccc---------------------------------------------cCCCCEEECCCCcCCccCHHHhcCC
Confidence            987 455321                                             3578999999999998888899999


Q ss_pred             ccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC-------CCCc
Q 009858          352 HSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN-------QFAT  424 (523)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-------~~~~  424 (523)
                      ++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+...       .+..
T Consensus       217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  295 (332)
T 2ft3_A          217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY  295 (332)
T ss_dssp             TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred             CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence            99999999999999888888999999999999999999 677789999999999999999995544321       1233


Q ss_pred             ccCCccCCCCCC
Q 009858          425 FSSDSYGGNLGL  436 (523)
Q Consensus       425 ~~~~~~~gn~~l  436 (523)
                      +....+.||+..
T Consensus       296 l~~L~l~~N~~~  307 (332)
T 2ft3_A          296 YNGISLFNNPVP  307 (332)
T ss_dssp             BSEEECCSSSSC
T ss_pred             ccceEeecCccc
Confidence            455566777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=249.10  Aligned_cols=251  Identities=20%  Similarity=0.194  Sum_probs=200.5

Q ss_pred             CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858           94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n  173 (523)
                      ..+.++.++..++..+....++++.|+|++|.++...+..|.++++|++|+|++|.+++..+..+..+. +|++|+|++|
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n  122 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDN  122 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCC
Confidence            456788888888876666688999999999999988888899999999999999999866667788887 8999999999


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCC
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      +++...+..|..+++|++|++++|.+....+..|.++++|++|++++|...+.++ ..|..+++|++|++++|.+.    
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----  198 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----  198 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence            9987777788889999999999999887767788888888888888854333333 34556666666666665543    


Q ss_pred             CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT  332 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  332 (523)
                                             .+|.  +                                          ..+++|+.
T Consensus       199 -----------------------~~~~--~------------------------------------------~~l~~L~~  211 (440)
T 3zyj_A          199 -----------------------EIPN--L------------------------------------------TPLIKLDE  211 (440)
T ss_dssp             -----------------------SCCC--C------------------------------------------TTCSSCCE
T ss_pred             -----------------------cccc--c------------------------------------------CCCcccCE
Confidence                                   2221  0                                          01466777


Q ss_pred             ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858          333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      |+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            78888888777788888899999999999999988888899999999999999999988888888999999999999998


Q ss_pred             cccC
Q 009858          413 EGRI  416 (523)
Q Consensus       413 ~~~~  416 (523)
                      .+..
T Consensus       292 ~CdC  295 (440)
T 3zyj_A          292 NCNC  295 (440)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            7543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.2e-29  Score=244.52  Aligned_cols=249  Identities=25%  Similarity=0.250  Sum_probs=178.8

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCc--cChhhHhhcccCCcEEEccCC
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG--TIPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~~L~~L~L~~n  173 (523)
                      +.++++++.++..+....++|++|++++|.++...+..|.++++|++|++++|.++.  ..|..+..+. +|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSC
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCC
Confidence            467888888876665557889999999999886666668889999999999999872  2367777776 7999999999


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCC-ccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC-cC
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVP-RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG-HL  251 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~  251 (523)
                      .++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..
T Consensus        89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            888 456667888888899988888875544 567888888888888888877777777777777777777776654 23


Q ss_pred             CCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccc
Q 009858          252 RDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT  331 (523)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  331 (523)
                      +..+  ..+                                                                   ++|+
T Consensus       168 ~~~~--~~l-------------------------------------------------------------------~~L~  178 (306)
T 2z66_A          168 PDIF--TEL-------------------------------------------------------------------RNLT  178 (306)
T ss_dssp             CSCC--TTC-------------------------------------------------------------------TTCC
T ss_pred             hhHH--hhC-------------------------------------------------------------------cCCC
Confidence            3322  233                                                                   4455


Q ss_pred             cccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCC-CCCeEECCCC
Q 009858          332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT-FLAVLNLSRN  410 (523)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~N  410 (523)
                      +|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            555555555544555666666677777777776655555666677777777777777766666666663 6777777777


Q ss_pred             cCccc
Q 009858          411 KLEGR  415 (523)
Q Consensus       411 ~l~~~  415 (523)
                      ++++.
T Consensus       259 ~~~~~  263 (306)
T 2z66_A          259 DFACT  263 (306)
T ss_dssp             CEECS
T ss_pred             Ceecc
Confidence            77654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=2.7e-28  Score=247.20  Aligned_cols=178  Identities=24%  Similarity=0.341  Sum_probs=126.8

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      ++|++|++++|.+++. +...++|++|++++|.+++ +| .|.++++|++|++++|+++ .+|..+   . +|++|++++
T Consensus       111 ~~L~~L~l~~n~l~~l-~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~-~L~~L~L~~  182 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---P-SLEFIAAGN  182 (454)
T ss_dssp             TTCCEEECCSSCCSCC-CSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---T-TCCEEECCS
T ss_pred             CCCcEEECCCCccCcc-cCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---c-cccEEECcC
Confidence            6777777777777653 2334678888888888875 55 4788888888888888887 466543   2 688888888


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      |.+++ +| .++.+++|++|++++|.+++ +|..   .++|++|++++|.+. .+| .++.+++|++|++++|.+.+. +
T Consensus       183 n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~  253 (454)
T 1jl5_A          183 NQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-P  253 (454)
T ss_dssp             SCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-C
T ss_pred             CcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-c
Confidence            88875 45 57888888888888888874 4432   257888888888877 566 377888888888888887653 2


Q ss_pred             CccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccc
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE  297 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~  297 (523)
                      .     .+++|+.|++++|.+++ +|..    ++.|+.++++.+.
T Consensus       254 ~-----~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~  288 (454)
T 1jl5_A          254 D-----LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENI  288 (454)
T ss_dssp             S-----CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSC
T ss_pred             c-----cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCc
Confidence            2     24678888888888773 5532    3567777776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=5.3e-28  Score=245.02  Aligned_cols=339  Identities=21%  Similarity=0.221  Sum_probs=211.7

Q ss_pred             hhhhHHHHHHHhhhhhcCCccccccccCCCccchhhh------------hhhccccccCCCcccCCCCCCCCCccEEEcc
Q 009858           34 SSISSFVYVLLFLELLAGSTCVVHGLQSHPRNTLKDY------------ASAAEFEASDGPKLLGNKKLPWKNLEYLDLR  101 (523)
Q Consensus        34 ~~l~~~~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~  101 (523)
                      ..++..+..+..|++|+++.|.+.+..+.....+..+            ....++..+.+..+..    -.++|++|+++
T Consensus        24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~   99 (454)
T 1jl5_A           24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVAS   99 (454)
T ss_dssp             ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS----CCTTCSEEECC
T ss_pred             hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC----CcCCCCEEEcc
Confidence            4566677888889999999988765333222222221            1112222222222211    13789999999


Q ss_pred             CCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCC
Q 009858          102 SNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE  181 (523)
Q Consensus       102 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~  181 (523)
                      +|.+++ +|..+++|++|++++|.+++. +..   .++|++|++++|+++ .+| .++.+. +|++|++++|++++ +|.
T Consensus       100 ~n~l~~-lp~~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~-~L~~L~l~~N~l~~-lp~  170 (454)
T 1jl5_A          100 CNSLTE-LPELPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE-KLP-ELQNSS-FLKIIDVDNNSLKK-LPD  170 (454)
T ss_dssp             SSCCSS-CCCCCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS-SCC-CCTTCT-TCCEEECCSSCCSC-CCC
T ss_pred             CCcCCc-cccccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC-CCc-ccCCCC-CCCEEECCCCcCcc-cCC
Confidence            999987 566678999999999988752 221   268999999999998 588 588887 89999999999985 555


Q ss_pred             CCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCC
Q 009858          182 TFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS  261 (523)
Q Consensus       182 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  261 (523)
                      .+   .+|++|++++|.+.+ +| .+.++++|++|++++|.+.+ +|..   .++|++|++++|.+. .+|. +  ..++
T Consensus       171 ~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~--~~l~  237 (454)
T 1jl5_A          171 LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-L--QNLP  237 (454)
T ss_dssp             CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-C--TTCT
T ss_pred             Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-c--CCCC
Confidence            43   489999999999985 56 68899999999999999885 4432   358999999999887 4443 2  6789


Q ss_pred             CCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH-HHhhcccccccCCCCcc
Q 009858          262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL-MKILTIFTTIDLSKNSF  340 (523)
Q Consensus       262 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l  340 (523)
                      +|++|++++|.++ .+|.    .++.|+.++++.+....  ++.. ......+......... ....++|+.|++++|.+
T Consensus       238 ~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~--l~~~-~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          238 FLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD--LPEL-PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI  309 (454)
T ss_dssp             TCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC--CCCC-CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC-cccc----cccccCEEECCCCcccc--cCcc-cCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence            9999999999988 4553    24677888877664332  1110 0000000000000000 00124555566666655


Q ss_pred             CcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc--cCCC
Q 009858          341 HGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG--RIPE  418 (523)
Q Consensus       341 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~  418 (523)
                      ++ ++.   ..++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|.
T Consensus       310 ~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          310 RS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             SE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             Cc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence            53 221   11467777777777764 4443   4677777777777774 343   35677777777777776  4554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=2.6e-28  Score=247.47  Aligned_cols=292  Identities=18%  Similarity=0.146  Sum_probs=165.8

Q ss_pred             CCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           93 KNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      ++|++|++++|.+++. |..  +++|++|++++|.+++. |  +..+++|++|++++|.+++ +|  ++.+. +|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~-~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLT-KLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCT-TCCEEEC
T ss_pred             CCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCC-cCCEEEC
Confidence            4555555555555543 221  45555555555555542 2  4455555555555555552 32  44444 4555555


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|++++. |  +..+++|++|++++|++++.   .+..+++|++|++++|...+.+  .+..+++|++|++++|.+.+.
T Consensus       114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence            55555532 2  44555555555555555432   1445555555555555333333  244455555555555555442


Q ss_pred             CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF  330 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  330 (523)
                       +    ...+++|+.|++++|.+++ ++   +..++.|+.++++.+......                     +..+++|
T Consensus       186 -~----l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ip---------------------~~~l~~L  235 (457)
T 3bz5_A          186 -D----VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEID---------------------VTPLTQL  235 (457)
T ss_dssp             -C----CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---------------------CTTCTTC
T ss_pred             -c----cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccccC---------------------ccccCCC
Confidence             1    1334555555555555542 22   344445555554443222100                     1226788


Q ss_pred             ccccCCCCccCcCcchhhcCcc-------cCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChh--------
Q 009858          331 TTIDLSKNSFHGEIPELMGKLH-------SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRE--------  395 (523)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--------  395 (523)
                      +.|++++|.+++..+..+..+.       +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|..        
T Consensus       236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence            9999999999876555555544       56778888888777766  578899999999999876665532        


Q ss_pred             hcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCCC
Q 009858          396 LTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNL  434 (523)
Q Consensus       396 l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn~  434 (523)
                      +..+++|++|++++|++++. | ...+..+..+...+|.
T Consensus       314 l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSC
T ss_pred             hhhcccCCEEECCCCccccc-c-cccCCcCcEEECCCCC
Confidence            55678999999999999974 4 3445555555555553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1e-28  Score=239.81  Aligned_cols=235  Identities=19%  Similarity=0.248  Sum_probs=157.7

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL  192 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (523)
                      .++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+. +|++|++++|.++ .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            355666666666665 44555555666666666666666 6666666665 5666666666666 455556666666666


Q ss_pred             ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCcc
Q 009858          193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN  272 (523)
Q Consensus       193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  272 (523)
                      ++++|++.+.+|..+..      .         ..+..+..+++|++|++++|.+. .+|..+  ..+++|++|++++|.
T Consensus       156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSP  217 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSC
T ss_pred             ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCC
Confidence            66665555555554432      0         00011223555666666665554 333332  445566666666666


Q ss_pred             CCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcc
Q 009858          273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLH  352 (523)
Q Consensus       273 l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  352 (523)
                      ++ .+|.. +                                          ..+++|++|++++|.+.+.+|..+..++
T Consensus       218 l~-~l~~~-l------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          218 LS-ALGPA-I------------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             CC-CCCGG-G------------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             CC-cCchh-h------------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence            65 33322 1                                          1256778888888888888888888999


Q ss_pred             cCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858          353 SLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       353 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      +|++|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9999999999999899999999999999999999999999999999999999999877665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.8e-28  Score=233.82  Aligned_cols=229  Identities=25%  Similarity=0.234  Sum_probs=152.6

Q ss_pred             CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858          141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN  220 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  220 (523)
                      ++++.+++.++ .+|..+   .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            44555555555 455432   22566666666666655555566666666666666666555555566666666666666


Q ss_pred             Cc-CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccccc
Q 009858          221 NK-MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK  299 (523)
Q Consensus       221 n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~  299 (523)
                      |. +....|..+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.++ .++...+.                
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~----------------  150 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFR----------------  150 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTT----------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccc-ccCHhHhc----------------
Confidence            65 444445556666666666666666555444443  44566666666666665 23322111                


Q ss_pred             ccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCC
Q 009858          300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE  379 (523)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  379 (523)
                                                .+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|+
T Consensus       151 --------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          151 --------------------------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             --------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             --------------------------cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence                                      156677778888888755566688888999999999999888888888999999


Q ss_pred             EEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCC
Q 009858          380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       380 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  418 (523)
                      +|++++|.+++..+..+..+++|+.|++++|++.+..+.
T Consensus       205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            999999999987777788899999999999998865543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=5e-28  Score=245.33  Aligned_cols=251  Identities=22%  Similarity=0.219  Sum_probs=197.5

Q ss_pred             cCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858          140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG  219 (523)
Q Consensus       140 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  219 (523)
                      .+.++.++..++ .+|..+.   +++++|+|++|++++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456677777776 6776543   367788888888777777777788888888888888776666777778888888888


Q ss_pred             CCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccccc
Q 009858          220 NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENK  299 (523)
Q Consensus       220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~  299 (523)
                      +|.+++..+..|..+++|++|++++|.+.+..+..+  ..+++|++|++++|...+.++...+.                
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~----------------  182 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFE----------------  182 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhh----------------
Confidence            888776666677778888888888887766555444  56788888888875544455443332                


Q ss_pred             ccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCC
Q 009858          300 SKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE  379 (523)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  379 (523)
                                                .+++|++|+|++|.++ .+|. +..+++|++|+|++|++++..|..|..+++|+
T Consensus       183 --------------------------~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  234 (440)
T 3zyj_A          183 --------------------------GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ  234 (440)
T ss_dssp             --------------------------TCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             --------------------------cccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCC
Confidence                                      2678899999999998 5564 78899999999999999998899999999999


Q ss_pred             EEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858          380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       380 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      +|+|++|++++..+..|..+++|+.|+|++|++++..+.. ..+..+..+.+.+||+.|++.
T Consensus       235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            9999999999999999999999999999999999655543 356677888899999988764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=6.3e-28  Score=245.46  Aligned_cols=250  Identities=20%  Similarity=0.175  Sum_probs=170.4

Q ss_pred             CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858          141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN  220 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  220 (523)
                      ..++.++..++ .+|..+.   ++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus        57 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            34444555554 4444322   2455555555555555555555555555555555555555555555555555555555


Q ss_pred             CcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccc
Q 009858          221 NKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS  300 (523)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~  300 (523)
                      |.+.+..+..+..+++|++|++++|.+.+..+..+  ..+++|+.|++++|...+.++...+.                 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~-----------------  193 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFE-----------------  193 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTT-----------------
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhcc-----------------
Confidence            55554444445555555555555555554433333  44666666666664433344432222                 


Q ss_pred             cccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCE
Q 009858          301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLES  380 (523)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  380 (523)
                                               .+++|++|+|++|.+++ +| .+..+++|++|+|++|.+++..|..|..+++|++
T Consensus       194 -------------------------~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  246 (452)
T 3zyi_A          194 -------------------------GLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK  246 (452)
T ss_dssp             -------------------------TCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred             -------------------------CCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCE
Confidence                                     26788999999999984 45 4788999999999999999988999999999999


Q ss_pred             EeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 009858          381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       381 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      |+|++|++++..+..|..+++|+.|+|++|++++..+.. ..+..+..+.+.+|++.|++.
T Consensus       247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            999999999999999999999999999999999555443 346677888899999988875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.1e-29  Score=243.74  Aligned_cols=257  Identities=19%  Similarity=0.244  Sum_probs=208.3

Q ss_pred             CCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           93 KNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      ++|++|++++|.+++..+..   +++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+. +|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT-TCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc-cCCEEE
Confidence            68999999999999877633   89999999999999988888999999999999999999944444477887 899999


Q ss_pred             ccCCcccccCC-CCCCCCCCCCEEECcCC-CCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          170 LRKNRFHGTIP-ETFPKGNNLTTLNFNGN-ELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       170 L~~n~l~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      +++|++++..+ ..|..+++|++|++++| .+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            99999995544 47899999999999999 47766678899999999999999999988899999999999999999997


Q ss_pred             cCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhh
Q 009858          248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL  327 (523)
Q Consensus       248 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (523)
                      ........  ..+++|+.|++++|.+++..+.. +...                                       ...
T Consensus       211 ~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~-l~~~---------------------------------------~~~  248 (353)
T 2z80_A          211 ILLLEIFV--DVTSSVECLELRDTDLDTFHFSE-LSTG---------------------------------------ETN  248 (353)
T ss_dssp             TTHHHHHH--HHTTTEEEEEEESCBCTTCCCC----------------------------------------------CC
T ss_pred             ccchhhhh--hhcccccEEECCCCccccccccc-cccc---------------------------------------ccc
Confidence            54333222  45899999999999998533221 1100                                       012


Q ss_pred             cccccccCCCCccCc----CcchhhcCcccCCeeeCcCCcccccCCcc-ccCCCCCCEEeCCCCcCCCcCC
Q 009858          328 TIFTTIDLSKNSFHG----EIPELMGKLHSLRLLNLSQNILSGNIPSS-LGDLTDLESLDLSSNVLDGVIP  393 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~~  393 (523)
                      ..++.++++++.+.+    .+|.++..+++|++|+|++|+++ .+|.. |..+++|++|+|++|.+.+..|
T Consensus       249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            334455555555543    57888999999999999999999 45554 6899999999999999997654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.8e-28  Score=233.77  Aligned_cols=252  Identities=21%  Similarity=0.157  Sum_probs=173.4

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc-
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR-  174 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~-  174 (523)
                      ++++.+++.++..+....++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|++++|. 
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCC
Confidence            6778888887765544577888888888888776667777788888888888887755577777776 68888887776 


Q ss_pred             ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCc
Q 009858          175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDY  254 (523)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  254 (523)
                      +....|..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  172 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence            66555667777777777777777777666667777777777777777776555555666666666666666554332222


Q ss_pred             cccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccccc
Q 009858          255 EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTID  334 (523)
Q Consensus       255 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  334 (523)
                      +  ..                                                                   +++|+.|+
T Consensus       173 ~--~~-------------------------------------------------------------------l~~L~~L~  183 (285)
T 1ozn_A          173 F--RG-------------------------------------------------------------------LHSLDRLL  183 (285)
T ss_dssp             T--TT-------------------------------------------------------------------CTTCCEEE
T ss_pred             h--cC-------------------------------------------------------------------ccccCEEE
Confidence            2  12                                                                   45566666


Q ss_pred             CCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          335 LSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       335 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      +++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+....+.. .-...++.+..+.+.+.+
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c  262 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPC  262 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBE
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCcccc
Confidence            6666666666777777788888888888888665566788888888888888876543221 111224445566777877


Q ss_pred             cCCC
Q 009858          415 RIPE  418 (523)
Q Consensus       415 ~~p~  418 (523)
                      ..|.
T Consensus       263 ~~p~  266 (285)
T 1ozn_A          263 SLPQ  266 (285)
T ss_dssp             EESG
T ss_pred             CCch
Confidence            7775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.2e-28  Score=237.46  Aligned_cols=224  Identities=21%  Similarity=0.234  Sum_probs=162.8

Q ss_pred             CCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      .++++.|+|++|.++..++..  +++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+. +|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-RLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT-TCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCc-CCCEEE
Confidence            378999999999998544433  899999999999999 88889999999999999999999 8999999998 899999


Q ss_pred             ccCCcccccCCCCCCC---------CCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeE
Q 009858          170 LRKNRFHGTIPETFPK---------GNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL  240 (523)
Q Consensus       170 L~~n~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  240 (523)
                      +++|.+.+.+|..+..         +++|++|++++|.++ .+|..+.++++|++|++++|.+.+ +|..+..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence            9999888888887654         455555555555554 444445555555555555555542 33344444444444


Q ss_pred             EeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchh
Q 009858          241 ILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQE  320 (523)
Q Consensus       241 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (523)
                      ++++|.+.+..|..+  ..                                                             
T Consensus       235 ~Ls~n~~~~~~p~~~--~~-------------------------------------------------------------  251 (328)
T 4fcg_A          235 DLRGCTALRNYPPIF--GG-------------------------------------------------------------  251 (328)
T ss_dssp             ECTTCTTCCBCCCCT--TC-------------------------------------------------------------
T ss_pred             ECcCCcchhhhHHHh--cC-------------------------------------------------------------
Confidence            444444443333322  22                                                             


Q ss_pred             HHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCC
Q 009858          321 VKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD  389 (523)
Q Consensus       321 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  389 (523)
                            +++|++|++++|.+.+.+|..+..+++|++|+|++|++.+.+|..++.+++|+.+++..+.+.
T Consensus       252 ------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          252 ------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence                  456666677777666677777778888888888888888888888888888888888877655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2e-28  Score=236.10  Aligned_cols=249  Identities=22%  Similarity=0.287  Sum_probs=197.1

Q ss_pred             CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCC--CCccccCCCCCcEEEC
Q 009858          141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS--VPRSLLNCANLQVLDL  218 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L  218 (523)
                      +.++++++.++ .+|..+.   ++|++|++++|.++...+..|.++++|++|++++|.+...  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            46777787777 7776543   3788888888888855555678888888888888888632  2556667888888888


Q ss_pred             CCCcCCCCchHhhhcCCCCCeEEeccccccCcCC-CccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccc
Q 009858          219 GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR-DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADE  297 (523)
Q Consensus       219 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~  297 (523)
                      ++|.+. .+|..+..+++|++|++++|.+.+..+ ..+  ..+++|++|++++|.+.+..+.. +               
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~---------------  146 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYLDISHTHTRVAFNGI-F---------------  146 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTT--TTCTTCCEEECTTSCCEECSTTT-T---------------
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhh--hhccCCCEEECCCCcCCccchhh-c---------------
Confidence            888887 466668888888888888888876544 233  56888999999998887443322 1               


Q ss_pred             ccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCc-CcchhhcCcccCCeeeCcCCcccccCCccccCCC
Q 009858          298 NKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG-EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT  376 (523)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  376 (523)
                                                 ..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..++
T Consensus       147 ---------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  199 (306)
T 2z66_A          147 ---------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  199 (306)
T ss_dssp             ---------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ---------------------------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence                                       226788999999999986 5788899999999999999999988899999999


Q ss_pred             CCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC-CCC-CcccCCccCCCCCCCCC
Q 009858          377 DLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG-NQF-ATFSSDSYGGNLGLCGF  439 (523)
Q Consensus       377 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~-~~~~~~~~~gn~~lc~~  439 (523)
                      +|++|+|++|.+++..+..+..+++|+.|++++|++++..|.. ..+ ..+....+.+|+..|++
T Consensus       200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            9999999999999888888999999999999999999887754 233 35677777888776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.3e-29  Score=244.81  Aligned_cols=250  Identities=24%  Similarity=0.250  Sum_probs=179.1

Q ss_pred             CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCC-ccChhhHh-------hcccCCcEEEccCCcccccCCCCC--
Q 009858          114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS-GTIPECIG-------NFSKSLRVLDLRKNRFHGTIPETF--  183 (523)
Q Consensus       114 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~-------~l~~~L~~L~L~~n~l~~~~p~~~--  183 (523)
                      ++|+.|++++|.+  .+|..+...  |+.|++++|.++ ..+|..+.       .+. +|++|++++|.+++..|..+  
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHH
Confidence            3455556666665  445544433  666777777763 34555554       455 67777777777777777665  


Q ss_pred             CCCCCCCEEECcCCCCCCCCCccccCC-----CCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC--Cccc
Q 009858          184 PKGNNLTTLNFNGNELVGSVPRSLLNC-----ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR--DYEA  256 (523)
Q Consensus       184 ~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~  256 (523)
                      ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..|..++.+++|++|++++|.+.+..+  ....
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            6777778888877777765 6666655     778888888887777666777777888888888777654321  1111


Q ss_pred             cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCC
Q 009858          257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLS  336 (523)
Q Consensus       257 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  336 (523)
                      ...+++|++|++++|.++ .++..                                       ....+..+++|++|+++
T Consensus       197 ~~~l~~L~~L~L~~N~l~-~~~~~---------------------------------------~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGME-TPSGV---------------------------------------CSALAAARVQLQGLDLS  236 (312)
T ss_dssp             TTSCTTCCEEECTTSCCC-CHHHH---------------------------------------HHHHHHTTCCCSEEECT
T ss_pred             hccCCCCCEEECCCCcCc-chHHH---------------------------------------HHHHHhcCCCCCEEECC
Confidence            255788888888888876 22211                                       01122336889999999


Q ss_pred             CCccCcCcc-hhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          337 KNSFHGEIP-ELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       337 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      +|.+++..| ..+..+++|++|+|++|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus       237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            999997665 45667899999999999999 7787766  8999999999999977 55 8899999999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=3.1e-29  Score=256.15  Aligned_cols=336  Identities=18%  Similarity=0.142  Sum_probs=248.6

Q ss_pred             HHHHHhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCC----CCC-
Q 009858           40 VYVLLFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA----PSS-  114 (523)
Q Consensus        40 ~~~~~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~-  114 (523)
                      +..+++|++|++++|.+....      ...               +...+..+++|++|++++|.+++..+.    .++ 
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~------~~~---------------l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEAR------CKD---------------ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHH------HHH---------------HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             HhhcCCccEEEccCCCCCHHH------HHH---------------HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            556677888888888754311      000               011122358999999999998763321    133 


Q ss_pred             ---CCcEEEccCCcCCC----cCchhhhCCCCcCEEEccCCcCCccChhhHhhc----ccCCcEEEccCCcccccC----
Q 009858          115 ---NMRVFLISNNKFIG----EIPRLICNTSTIEILDLSNNSLSGTIPECIGNF----SKSLRVLDLRKNRFHGTI----  179 (523)
Q Consensus       115 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l----~~~L~~L~L~~n~l~~~~----  179 (523)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+...    .++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               79999999999984    457888999999999999999986656655542    126999999999998643    


Q ss_pred             CCCCCCCCCCCEEECcCCCCCCCCCcccc-----CCCCCcEEECCCCcCCCC----chHhhhcCCCCCeEEeccccccCc
Q 009858          180 PETFPKGNNLTTLNFNGNELVGSVPRSLL-----NCANLQVLDLGNNKMKDT----FPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       180 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            45566778999999999998754444443     367999999999999864    577888999999999999987543


Q ss_pred             CCCccc---cccCCCCcEEeccCccCCCC----CchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858          251 LRDYEA---DYYFSKLRILDLSNNNFTGS----LPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL  323 (523)
Q Consensus       251 ~~~~~~---~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (523)
                      ......   ...+++|++|++++|.+++.    ++ ..+..++.|+.++++.+....                  .....
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~------------------~~~~~  303 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNELGD------------------EGARL  303 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCCCHH------------------HHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCCCch------------------HHHHH
Confidence            211110   12478999999999998743    33 236668889999888663221                  11111


Q ss_pred             HH-----hhcccccccCCCCccCcC----cchhhcCcccCCeeeCcCCcccccCCccccC-----CCCCCEEeCCCCcCC
Q 009858          324 MK-----ILTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPSSLGD-----LTDLESLDLSSNVLD  389 (523)
Q Consensus       324 ~~-----~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~  389 (523)
                      +.     ..++|++|++++|.+++.    ++..+..+++|++|+|++|.+++..+..+..     .++|++|+|++|.++
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            11     236999999999999865    4666778899999999999998765544432     679999999999998


Q ss_pred             C----cCChhhcCCCCCCeEECCCCcCccc
Q 009858          390 G----VIPRELTRLTFLAVLNLSRNKLEGR  415 (523)
Q Consensus       390 ~----~~~~~l~~l~~L~~L~Ls~N~l~~~  415 (523)
                      +    .+|..+..+++|++|++++|++++.
T Consensus       384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          384 DSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             hhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            6    6788888999999999999999854

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=3.7e-29  Score=242.19  Aligned_cols=265  Identities=21%  Similarity=0.205  Sum_probs=168.1

Q ss_pred             CccEEEccCCCCccCCC---CCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           94 NLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        94 ~L~~L~L~~n~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      .++..+++.+.+.....   ..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|  +..+. +|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC-CCCEEEC
Confidence            34445555555432221   124567777777777776666677777777777777777764333  55665 6777777


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|.+++..     ..++|++|++++|.+++..+.   .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            777776433     225677777777777644332   356677777777777765565666777777777777776654


Q ss_pred             CCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF  330 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  330 (523)
                      .+..+. ..+++|++|++++|.+++ ++..                                            ..+++|
T Consensus       160 ~~~~~~-~~l~~L~~L~L~~N~l~~-~~~~--------------------------------------------~~l~~L  193 (317)
T 3o53_A          160 NFAELA-ASSDTLEHLNLQYNFIYD-VKGQ--------------------------------------------VVFAKL  193 (317)
T ss_dssp             EGGGGG-GGTTTCCEEECTTSCCCE-EECC--------------------------------------------CCCTTC
T ss_pred             cHHHHh-hccCcCCEEECCCCcCcc-cccc--------------------------------------------cccccC
Confidence            433321 245677777777776652 1110                                            014667


Q ss_pred             ccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCC-CcCChhhcCCCCCCeEECCC
Q 009858          331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD-GVIPRELTRLTFLAVLNLSR  409 (523)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~  409 (523)
                      ++|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++++
T Consensus       194 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            77777777777 34444777777888888888777 45666777778888888888777 56667777777777777774


Q ss_pred             C-cCcccCC
Q 009858          410 N-KLEGRIP  417 (523)
Q Consensus       410 N-~l~~~~p  417 (523)
                      | .++|..|
T Consensus       272 ~~~l~~~~~  280 (317)
T 3o53_A          272 VKKLTGQNE  280 (317)
T ss_dssp             HHHHHSSSS
T ss_pred             chhccCCch
Confidence            3 4444333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.1e-25  Score=234.91  Aligned_cols=242  Identities=26%  Similarity=0.295  Sum_probs=160.6

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      ++|++|++++|.++.. |..+++|++|++++|.++. +|.   .+++|++|++++|.++ .+|.   .+. +|++|++++
T Consensus        61 ~~L~~L~L~~N~l~~l-p~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~-~L~~L~L~~  130 (622)
T 3g06_A           61 AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPS-GLCKLWIFG  130 (622)
T ss_dssp             TTCSEEEECSCCCSCC-CCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCT-TCCEEECCS
T ss_pred             CCCcEEEecCCCCCCC-CCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCC-CcCEEECCC
Confidence            5666666666666533 3355666666666666653 333   4566666666666666 4444   222 566666666


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      |++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+.+...
T Consensus       131 N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~  198 (622)
T 3g06_A          131 NQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT  198 (622)
T ss_dssp             SCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC
T ss_pred             CCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC
Confidence            66663 3332   2566666666666653 332   23556666666666653 33   345566666666666553221


Q ss_pred             CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccccc
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT  332 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  332 (523)
                            .+++|+.|++++|.++ .+|.                                              .+++|+.
T Consensus       199 ------~~~~L~~L~L~~N~l~-~l~~----------------------------------------------~~~~L~~  225 (622)
T 3g06_A          199 ------LPSELYKLWAYNNRLT-SLPA----------------------------------------------LPSGLKE  225 (622)
T ss_dssp             ------CCTTCCEEECCSSCCS-SCCC----------------------------------------------CCTTCCE
T ss_pred             ------ccchhhEEECcCCccc-ccCC----------------------------------------------CCCCCCE
Confidence                  1356666666666655 3331                                              1478999


Q ss_pred             ccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858          333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      |++++|.+++ +|   ..+++|+.|+|++|.++ .+|.   .+++|+.|+|++|+++ .+|..+.++++|+.|++++|++
T Consensus       226 L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          226 LIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             EECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred             EEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence            9999999994 56   46689999999999999 5665   6789999999999999 6688899999999999999999


Q ss_pred             cccCCC
Q 009858          413 EGRIPE  418 (523)
Q Consensus       413 ~~~~p~  418 (523)
                      ++.+|.
T Consensus       297 ~~~~~~  302 (622)
T 3g06_A          297 SERTLQ  302 (622)
T ss_dssp             CHHHHH
T ss_pred             CCcCHH
Confidence            987765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.9e-29  Score=241.39  Aligned_cols=249  Identities=22%  Similarity=0.235  Sum_probs=183.4

Q ss_pred             CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCC-CcCchhhh-------CCCCcCEEEccCCcCCccChhhH--hh
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFI-GEIPRLIC-------NTSTIEILDLSNNSLSGTIPECI--GN  160 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~~l--~~  160 (523)
                      .++|+.|++++|.+  .+|.. ...|+.|++++|.+. ...|..+.       ++++|++|++++|.+++.+|..+  ..
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            46788888888888  44443 344788888888773 34555554       68888888888888887788776  56


Q ss_pred             cccCCcEEEccCCcccccCCCCCCCC-----CCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC--chHhh--
Q 009858          161 FSKSLRVLDLRKNRFHGTIPETFPKG-----NNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT--FPHWL--  231 (523)
Q Consensus       161 l~~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l--  231 (523)
                      +. +|++|++++|++++. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|.+.+.  .+..+  
T Consensus       120 l~-~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GP-DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SC-CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CC-CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            65 788888888888866 6666655     7888888888888877777888888888888888887654  33444  


Q ss_pred             hcCCCCCeEEeccccccCcCCCc-cccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcccccc
Q 009858          232 GTLRELQVLILRSNKFYGHLRDY-EADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYED  310 (523)
Q Consensus       232 ~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  310 (523)
                      ..+++|++|++++|.+.+..... .....+++|++|++++|.+++..|...+.                           
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------  250 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD---------------------------  250 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC---------------------------
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh---------------------------
Confidence            77888888888888876321111 11135678888888888887544321111                           


Q ss_pred             ceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 009858          311 SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG  390 (523)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  390 (523)
                                     .+++|++|+|++|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|+|++|++++
T Consensus       251 ---------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 ---------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             ---------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ---------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence                           1577888999999998 7777665  8899999999999865 66 8899999999999999885


Q ss_pred             c
Q 009858          391 V  391 (523)
Q Consensus       391 ~  391 (523)
                      .
T Consensus       311 ~  311 (312)
T 1wwl_A          311 S  311 (312)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=8.4e-27  Score=225.59  Aligned_cols=239  Identities=21%  Similarity=0.192  Sum_probs=196.5

Q ss_pred             CcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECc
Q 009858          116 MRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFN  195 (523)
Q Consensus       116 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  195 (523)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..+..+. +|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            44567777777655556667788999999999999977778898887 89999999999987665  8899999999999


Q ss_pred             CCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCC
Q 009858          196 GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTG  275 (523)
Q Consensus       196 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  275 (523)
                      +|.+++     +...++|++|++++|.+.+..+.   .+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+
T Consensus        89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           89 NNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             SSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCE
T ss_pred             CCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCc
Confidence            999873     23458999999999999865543   46889999999999987766555  568999999999999885


Q ss_pred             CCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCC
Q 009858          276 SLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLR  355 (523)
Q Consensus       276 ~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  355 (523)
                      ..+..++                                          ..+++|++|++++|.+++. +. ...+++|+
T Consensus       159 ~~~~~~~------------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~  194 (317)
T 3o53_A          159 VNFAELA------------------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK  194 (317)
T ss_dssp             EEGGGGG------------------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred             ccHHHHh------------------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCC
Confidence            4333221                                          1267899999999999854 43 33589999


Q ss_pred             eeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858          356 LLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       356 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      +|+|++|++++ +|..+..+++|++|+|++|++++ +|..+..+++|+.|++++|+++
T Consensus       195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred             EEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence            99999999995 55558999999999999999995 5777899999999999999998

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.8e-27  Score=242.10  Aligned_cols=234  Identities=22%  Similarity=0.204  Sum_probs=111.9

Q ss_pred             CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858          115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF  194 (523)
Q Consensus       115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  194 (523)
                      +|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+. +|++|+|++|.+++..+     .++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            44444444444444444455555555555555555553332  44444 45555555555553322     145555555


Q ss_pred             cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858          195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+..+..+. ..+++|+.|++++|.++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCccc
Confidence            55555433222   234555555555555544444455555555555555554443332221 12444445555444443


Q ss_pred             CCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccC
Q 009858          275 GSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSL  354 (523)
Q Consensus       275 ~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  354 (523)
                      +. |..                                            ..+++|+.|+|++|.+++ +|..+..+++|
T Consensus       183 ~~-~~~--------------------------------------------~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L  216 (487)
T 3oja_A          183 DV-KGQ--------------------------------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGV  216 (487)
T ss_dssp             EE-ECC--------------------------------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred             cc-ccc--------------------------------------------ccCCCCCEEECCCCCCCC-CCHhHcCCCCc
Confidence            21 100                                            003445555555555553 22235555555


Q ss_pred             CeeeCcCCcccccCCccccCCCCCCEEeCCCCcCC-CcCChhhcCCCCCCeEEC
Q 009858          355 RLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD-GVIPRELTRLTFLAVLNL  407 (523)
Q Consensus       355 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L  407 (523)
                      +.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus       217 ~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             cEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            666666655553 4444555555666666666555 344444444544444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2e-25  Score=211.63  Aligned_cols=227  Identities=22%  Similarity=0.195  Sum_probs=149.9

Q ss_pred             EEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCc
Q 009858          143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK  222 (523)
Q Consensus       143 L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  222 (523)
                      .+..+.+++ .+|..+.   ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus        12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            344444444 4554332   256666666666665555556666666666666666665555556666666666666666


Q ss_pred             CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC-CchHHHhcccccccccccccccccc
Q 009858          223 MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS-LPAMFFKNMKAMTDIGEAADENKSK  301 (523)
Q Consensus       223 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~l~~~~~~~~~~  301 (523)
                      +.+..+..+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+. +|.. +                   
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~-------------------  145 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-F-------------------  145 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-G-------------------
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-h-------------------
Confidence            665555566666666666666666655444333  4566777777777766531 2322 1                   


Q ss_pred             ccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCC----eeeCcCCcccccCCccccCCCC
Q 009858          302 YMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLR----LLNLSQNILSGNIPSSLGDLTD  377 (523)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~  377 (523)
                                             ..+++|++|++++|.+++..+..+..+++|+    +|++++|.+++..+..+. ..+
T Consensus       146 -----------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~  201 (276)
T 2z62_A          146 -----------------------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIR  201 (276)
T ss_dssp             -----------------------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCC
T ss_pred             -----------------------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCc
Confidence                                   1256777777777777766666666666666    889999999866555554 458


Q ss_pred             CCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCC
Q 009858          378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEG  419 (523)
Q Consensus       378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~  419 (523)
                      |++|+|++|++++..+..|..+++|+.|++++|++++..|..
T Consensus       202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            999999999999887778899999999999999999877754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=1e-28  Score=252.32  Aligned_cols=322  Identities=17%  Similarity=0.155  Sum_probs=159.7

Q ss_pred             CCccEEEccCCCCccCCCC----CCCCCcEEEccCCcCCC----cCchhhhCCCCcCEEEccCCcCCccChhhHhhccc-
Q 009858           93 KNLEYLDLRSNLLQGPVPA----PSSNMRVFLISNNKFIG----EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSK-  163 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~----~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-  163 (523)
                      ++|++|++++|+++.....    .+++|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+....+ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4566666666666543322    15666666766666653    23445566666677777666666444444444332 


Q ss_pred             ---CCcEEEccCCcccc----cCCCCCCCCCCCCEEECcCCCCCCCCCccc-----cCCCCCcEEECCCCcCCCC----c
Q 009858          164 ---SLRVLDLRKNRFHG----TIPETFPKGNNLTTLNFNGNELVGSVPRSL-----LNCANLQVLDLGNNKMKDT----F  227 (523)
Q Consensus       164 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~  227 (523)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++.    +
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               36667776666663    335556666666677776666653322222     1244566666666666543    2


Q ss_pred             hHhhhcCCCCCeEEeccccccCcCCCcccc---ccCCCCcEEeccCccCCCCC---chHHHhcccccccccccccccccc
Q 009858          228 PHWLGTLRELQVLILRSNKFYGHLRDYEAD---YYFSKLRILDLSNNNFTGSL---PAMFFKNMKAMTDIGEAADENKSK  301 (523)
Q Consensus       228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~---p~~~~~~l~~L~~l~~~~~~~~~~  301 (523)
                      +..+..+++|++|++++|.+.+........   ...++|++|++++|.+++..   -...+..++.|+.++++.+.....
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            444555666666666666654322211100   12446666666666665321   012344556666666655432111


Q ss_pred             ccC---ccc---cccceEE-----Eecch----hHHHHHhhcccccccCCCCccCcCcchhhcC-----cccCCeeeCcC
Q 009858          302 YMG---ETY---YEDSVTL-----IIKRQ----EVKLMKILTIFTTIDLSKNSFHGEIPELMGK-----LHSLRLLNLSQ  361 (523)
Q Consensus       302 ~~~---~~~---~~~~~~~-----~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~  361 (523)
                      ...   ...   ......+     .+...    ....+..+++|++|++++|.+++..+..+..     .++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            000   000   0000000     00000    1122333455666666666554332222221     24566666666


Q ss_pred             Cccccc----CCccccCCCCCCEEeCCCCcCCCcCChhhcC-----CCCCCeEECCCCcCcc
Q 009858          362 NILSGN----IPSSLGDLTDLESLDLSSNVLDGVIPRELTR-----LTFLAVLNLSRNKLEG  414 (523)
Q Consensus       362 n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~  414 (523)
                      |.+++.    ++..+..+++|++|+|++|.+++..+..+..     .++|++|++++|.+++
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            655543    2344445566666666666655443333321     4456666666666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=236.96  Aligned_cols=225  Identities=21%  Similarity=0.177  Sum_probs=187.2

Q ss_pred             CchhhhCC----CCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCc
Q 009858          130 IPRLICNT----STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPR  205 (523)
Q Consensus       130 ~~~~~~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  205 (523)
                      +|..+..+    ++|++|+|++|.+++..|..+..+. +|++|+|++|.+++..|  |..+++|++|++++|.+++.   
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l---   95 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL---   95 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE---
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC---
Confidence            34445444    4899999999999977778898887 89999999999997766  88999999999999998743   


Q ss_pred             cccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcc
Q 009858          206 SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNM  285 (523)
Q Consensus       206 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l  285 (523)
                        ...++|++|++++|.+.+..+.   .+++|+.|++++|.+.+..+..+  ..+++|+.|++++|.+++..|..+..  
T Consensus        96 --~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~--  166 (487)
T 3oja_A           96 --LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA--  166 (487)
T ss_dssp             --EECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG--
T ss_pred             --CCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh--
Confidence              2348999999999999876554   46889999999999988777665  66899999999999998655544321  


Q ss_pred             ccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCccc
Q 009858          286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS  365 (523)
Q Consensus       286 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  365 (523)
                                                              .+++|+.|+|++|.+++. |. ...+++|+.|+|++|.++
T Consensus       167 ----------------------------------------~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          167 ----------------------------------------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             ----------------------------------------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred             ----------------------------------------hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCC
Confidence                                                    267899999999999955 33 336899999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858          366 GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       366 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      +.. ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++
T Consensus       205 ~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          205 FMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            654 458999999999999999996 5667889999999999999998

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=8.6e-25  Score=207.24  Aligned_cols=229  Identities=19%  Similarity=0.167  Sum_probs=154.2

Q ss_pred             EEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCccc
Q 009858           97 YLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH  176 (523)
Q Consensus        97 ~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~  176 (523)
                      .++..+..++..+....++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+. +|++|++++|.++
T Consensus        11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~   89 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQ   89 (276)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC
T ss_pred             eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccC
Confidence            344555555443333355677777777777766666777778888888888877754455666666 6888888888777


Q ss_pred             ccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC-chHhhhcCCCCCeEEeccccccCcCCCcc
Q 009858          177 GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT-FPHWLGTLRELQVLILRSNKFYGHLRDYE  255 (523)
Q Consensus       177 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  255 (523)
                      +..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+.     
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-----  164 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----  164 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-----
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-----
Confidence            76667777777888888887777766555677777777777777777653 466666666666666665554322     


Q ss_pred             ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccc-ccc
Q 009858          256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT-TID  334 (523)
Q Consensus       256 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~  334 (523)
                                            +...+..+..                                       ++.+. .|+
T Consensus       165 ----------------------~~~~~~~l~~---------------------------------------L~~l~l~L~  183 (276)
T 2z62_A          165 ----------------------YCTDLRVLHQ---------------------------------------MPLLNLSLD  183 (276)
T ss_dssp             ----------------------CGGGGHHHHT---------------------------------------CTTCCEEEE
T ss_pred             ----------------------CHHHhhhhhh---------------------------------------ccccceeee
Confidence                                  2111222111                                       11222 678


Q ss_pred             CCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCC
Q 009858          335 LSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIP  393 (523)
Q Consensus       335 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~  393 (523)
                      +++|.+++..+..+ ...+|++|+|++|.+++..+..|..+++|++|+|++|.+....+
T Consensus       184 ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          184 LSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            88888885444444 44589999999999997666678899999999999999986543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=7.4e-24  Score=200.00  Aligned_cols=206  Identities=25%  Similarity=0.267  Sum_probs=150.1

Q ss_pred             CcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEEC
Q 009858          139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDL  218 (523)
Q Consensus       139 ~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  218 (523)
                      ..+++++++++++ .+|..+.   ++|++|++++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4677888888877 6776543   36788888888777666667777777888888777777555555677777777777


Q ss_pred             CCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccc
Q 009858          219 GNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN  298 (523)
Q Consensus       219 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~  298 (523)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+  ..                                       
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~---------------------------------------  131 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DS---------------------------------------  131 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TT---------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--Cc---------------------------------------
Confidence            7777765555555666666666666665543333222  12                                       


Q ss_pred             cccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCC
Q 009858          299 KSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDL  378 (523)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  378 (523)
                                                  +++|++|+|++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|
T Consensus       132 ----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  183 (270)
T 2o6q_A          132 ----------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL  183 (270)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ----------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence                                        4566666677777765555567788899999999999987767778889999


Q ss_pred             CEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCC
Q 009858          379 ESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIP  417 (523)
Q Consensus       379 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  417 (523)
                      ++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            999999999998777788889999999999999886654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1e-23  Score=220.03  Aligned_cols=269  Identities=22%  Similarity=0.226  Sum_probs=213.8

Q ss_pred             HhhhhhcCCccccccccCCCccchhhhhhhccccccCCCcccCCCCCCCCCccEEEccCCCCccCCCCCCCCCcEEEccC
Q 009858           44 LFLELLAGSTCVVHGLQSHPRNTLKDYASAAEFEASDGPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISN  123 (523)
Q Consensus        44 ~~l~~l~~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~  123 (523)
                      .+++.|+++++.+..++.   ... ......++..+.+..+..    .+++|++|+|++|.+++.. ..+++|++|++++
T Consensus        40 ~~l~~L~ls~n~L~~lp~---~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp-~~l~~L~~L~Ls~  110 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPD---CLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP-VLPPGLLELSIFS  110 (622)
T ss_dssp             HCCCEEECCSSCCSCCCS---CCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCC-CCCTTCCEEEECS
T ss_pred             CCCcEEEecCCCcCccCh---hhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCC-CCCCCCCEEECcC
Confidence            357888999888775443   222 223344555555544333    3689999999999998644 4899999999999


Q ss_pred             CcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCC
Q 009858          124 NKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSV  203 (523)
Q Consensus       124 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  203 (523)
                      |.+++. |.   .+++|+.|++++|+++ .+|..+   . +|++|++++|.+++ +|.   .+.+|+.|++++|.+++ +
T Consensus       111 N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~l---~-~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          111 NPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVLP---P-GLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             CCCCCC-CC---CCTTCCEEECCSSCCS-CCCCCC---T-TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             CcCCCC-CC---CCCCcCEEECCCCCCC-cCCCCC---C-CCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence            999864 43   5789999999999998 677643   4 89999999999985 454   34689999999999985 5


Q ss_pred             CccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHh
Q 009858          204 PRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFK  283 (523)
Q Consensus       204 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  283 (523)
                      |   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.+.... .     .+++|+.|++++|.++ .+|..   
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~-~-----~~~~L~~L~Ls~N~L~-~lp~~---  239 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLP-A-----LPSGLKELIVSGNRLT-SLPVL---  239 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC-C-----CCTTCCEEECCSSCCS-CCCCC---
T ss_pred             c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccC-C-----CCCCCCEEEccCCccC-cCCCC---
Confidence            5   457999999999999985 443   3579999999999987433 2     2589999999999998 35511   


Q ss_pred             ccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCc
Q 009858          284 NMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI  363 (523)
Q Consensus       284 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  363 (523)
                                                                 +++|+.|+|++|.++ .+|.   .+++|+.|+|++|.
T Consensus       240 -------------------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          240 -------------------------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred             -------------------------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence                                                       578999999999999 5665   67899999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCC
Q 009858          364 LSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT  400 (523)
Q Consensus       364 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  400 (523)
                      ++ .+|..+..+++|+.|+|++|.+++..|..+..++
T Consensus       273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            99 7888999999999999999999998888776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.6e-23  Score=197.60  Aligned_cols=205  Identities=25%  Similarity=0.272  Sum_probs=165.4

Q ss_pred             CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEE
Q 009858          114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN  193 (523)
Q Consensus       114 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  193 (523)
                      .+.+.++++++.++. +|..+.  ++|++|++++|++++..+..+..+. +|++|++++|.++...+..|..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            467899999999984 565543  6899999999999955555788887 899999999999977777789999999999


Q ss_pred             CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccC
Q 009858          194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNF  273 (523)
Q Consensus       194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  273 (523)
                      +++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+  ..++            
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~------------  157 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--DKLT------------  157 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCT------------
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc--cCCc------------
Confidence            99999997777788999999999999999998888889999999999999998765444333  3344            


Q ss_pred             CCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCccc
Q 009858          274 TGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHS  353 (523)
Q Consensus       274 ~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  353 (523)
                                                                             +|+.|++++|.+++..+..+..+++
T Consensus       158 -------------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          158 -------------------------------------------------------SLKELRLYNNQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             -------------------------------------------------------TCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             -------------------------------------------------------ccceeEecCCcCcEeChhHhccCCC
Confidence                                                                   4455555555555444555677788


Q ss_pred             CCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCc
Q 009858          354 LRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV  391 (523)
Q Consensus       354 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  391 (523)
                      |++|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            88888888888866666788888899999999887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.2e-23  Score=198.79  Aligned_cols=178  Identities=20%  Similarity=0.208  Sum_probs=118.8

Q ss_pred             CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      +++|+.|++++|.++...... +++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+. +|++|++
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLT-NLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEEC
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCc-CCCEEEC
Confidence            467788888887776433222 67777777777777642  3566777777777777777744444456665 6777777


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            77777766666667777777777777777755555666777777777777777765555566677777777777776665


Q ss_pred             CCCccccccCCCCcEEeccCccCC
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      .+..+  ..+++|+.|++++|.+.
T Consensus       197 ~~~~~--~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          197 PDGVF--DRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CTTTT--TTCTTCCEEECCSSCBC
T ss_pred             CHHHH--hCCcCCCEEEccCCCcc
Confidence            55443  44666666666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.8e-23  Score=197.75  Aligned_cols=184  Identities=21%  Similarity=0.204  Sum_probs=164.1

Q ss_pred             CCCCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           91 PWKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      .++++++++++++.++..++...++++.|++++|.+++..+..|.++++|++|++++|.++ .++.. ..+. +|++|++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~-~L~~L~L   84 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLP-VLGTLDL   84 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCT-TCCEEEC
T ss_pred             ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCC-cCCEEEC
Confidence            4689999999999999777666889999999999999888899999999999999999998 55554 5666 8999999


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            999999 7788899999999999999999987778899999999999999999987778889999999999999999876


Q ss_pred             CCCccccccCCCCcEEeccCccCCCCCchHH
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMF  281 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  281 (523)
                      .+..+  ..+++|+.|++++|.++ .+|..+
T Consensus       164 ~~~~~--~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          164 PAGLL--NGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             CTTTT--TTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             CHHHh--cCcCCCCEEECCCCcCC-ccChhh
Confidence            66555  56899999999999998 677554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.8e-24  Score=203.07  Aligned_cols=175  Identities=19%  Similarity=0.214  Sum_probs=117.0

Q ss_pred             CCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858           93 KNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR  171 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~  171 (523)
                      .++..+++..+.+....... +++|+.|++++|.+.. + ..+..+++|++|++++|.+++ ++ .+..+. +|++|+++
T Consensus        19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~-~L~~L~L~   93 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-IS-ALKELT-NLTYLILT   93 (272)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CG-GGTTCT-TCCEEECT
T ss_pred             HHHHHHHhcCcccccccccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-ch-hhcCCC-CCCEEECC
Confidence            34555556666655443333 7788888888887763 2 246778888888888888773 43 566666 78888888


Q ss_pred             CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858          172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL  251 (523)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  251 (523)
                      +|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            88887666666777788888888888877666666777778888888887777666656667777777777777665444


Q ss_pred             CCccccccCCCCcEEeccCccCC
Q 009858          252 RDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      +..+  ..+++|++|++++|.++
T Consensus       174 ~~~~--~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          174 EGVF--DKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTTT--TTCTTCCEEECCSSCCS
T ss_pred             HHHh--cCCccCCEEECCCCcCC
Confidence            4333  33444555554444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=7.7e-24  Score=204.12  Aligned_cols=231  Identities=22%  Similarity=0.234  Sum_probs=173.3

Q ss_pred             CCcCEEEccCCcCCccChhh---HhhcccCCcEEEccCCcccccCCCCC--CCCCCCCEEECcCCCCCCCCC----cccc
Q 009858          138 STIEILDLSNNSLSGTIPEC---IGNFSKSLRVLDLRKNRFHGTIPETF--PKGNNLTTLNFNGNELVGSVP----RSLL  208 (523)
Q Consensus       138 ~~L~~L~L~~n~l~~~~p~~---l~~l~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~  208 (523)
                      ..++.+.+.++.++...-..   +..+. +|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            35677777777665221111   12233 68888888888888888877  788888889998888886544    3445


Q ss_pred             CCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc--CCCccccccCCCCcEEeccCccCCCCCchHHHhccc
Q 009858          209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH--LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMK  286 (523)
Q Consensus       209 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~  286 (523)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+.......+++|++|++++|.++ .++...     
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~-----  216 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVC-----  216 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHH-----
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHH-----
Confidence            788899999999988877778888888999999998886542  111111245789999999999886 333211     


Q ss_pred             cccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCc---ccCCeeeCcCCc
Q 009858          287 AMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKL---HSLRLLNLSQNI  363 (523)
Q Consensus       287 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~  363 (523)
                                                        ...+..+++|++|+|++|.+++..|..+..+   ++|++|+|++|+
T Consensus       217 ----------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          217 ----------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             ----------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             ----------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence                                              1123347889999999999998778777666   699999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          364 LSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       364 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      ++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       263 l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          263 LE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            99 6777664  8999999999999975 33 6788999999999999973

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=4e-23  Score=196.68  Aligned_cols=204  Identities=25%  Similarity=0.275  Sum_probs=166.1

Q ss_pred             hhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCC
Q 009858          159 GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ  238 (523)
Q Consensus       159 ~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  238 (523)
                      ..+. ++++++++++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..+  .+.+++|+
T Consensus         7 ~~l~-~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            7 SKVA-SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             ECST-TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             cccC-CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            3444 7999999999998 5665554  589999999999998778889999999999999999885433  27889999


Q ss_pred             eEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecc
Q 009858          239 VLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKR  318 (523)
Q Consensus       239 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (523)
                      +|++++|.+.. +|..+  ..+++|++|++++|.++ .+|...|.                                   
T Consensus        81 ~L~Ls~N~l~~-l~~~~--~~l~~L~~L~l~~N~l~-~l~~~~~~-----------------------------------  121 (290)
T 1p9a_G           81 TLDLSHNQLQS-LPLLG--QTLPALTVLDVSFNRLT-SLPLGALR-----------------------------------  121 (290)
T ss_dssp             EEECCSSCCSS-CCCCT--TTCTTCCEEECCSSCCC-CCCSSTTT-----------------------------------
T ss_pred             EEECCCCcCCc-Cchhh--ccCCCCCEEECCCCcCc-ccCHHHHc-----------------------------------
Confidence            99999999874 34433  56889999999999988 44432222                                   


Q ss_pred             hhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC
Q 009858          319 QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR  398 (523)
Q Consensus       319 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  398 (523)
                             .+++|++|+|++|.+++..+..+..+++|+.|+|++|+++...+..|..+++|++|+|++|+++ .+|..+..
T Consensus       122 -------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~  193 (290)
T 1p9a_G          122 -------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (290)
T ss_dssp             -------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             -------CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence                   2678889999999999777777888999999999999999666667788999999999999998 56667777


Q ss_pred             CCCCCeEECCCCcCccc
Q 009858          399 LTFLAVLNLSRNKLEGR  415 (523)
Q Consensus       399 l~~L~~L~Ls~N~l~~~  415 (523)
                      ++.|+.+++++|++.+.
T Consensus       194 ~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          194 SHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TCCCSEEECCSCCBCCS
T ss_pred             cccCCeEEeCCCCccCc
Confidence            88999999999999754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.1e-24  Score=214.75  Aligned_cols=176  Identities=20%  Similarity=0.184  Sum_probs=92.5

Q ss_pred             EEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCc----hhhhCCC-CcCEEEccCCcCCccChhhHhhc-----ccC
Q 009858           98 LDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIP----RLICNTS-TIEILDLSNNSLSGTIPECIGNF-----SKS  164 (523)
Q Consensus        98 L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~~  164 (523)
                      ++++.|.+++.+|..   .++|++|++++|.+++..+    ..|.+++ +|++|+|++|.+++..+..+..+     . +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-N   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-T
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-C
Confidence            456666666655543   4446666666666665554    5556666 66666666666665555555554     3 5


Q ss_pred             CcEEEccCCcccccCCCCC----CCC-CCCCEEECcCCCCCCCCCccc----cC-CCCCcEEECCCCcCCCCc----hHh
Q 009858          165 LRVLDLRKNRFHGTIPETF----PKG-NNLTTLNFNGNELVGSVPRSL----LN-CANLQVLDLGNNKMKDTF----PHW  230 (523)
Q Consensus       165 L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~----~~~  230 (523)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            6666666666664443322    222 566666666666654443332    22 246666666666655322    223


Q ss_pred             hhcCC-CCCeEEeccccccCcCCCccc--cccC-CCCcEEeccCccCC
Q 009858          231 LGTLR-ELQVLILRSNKFYGHLRDYEA--DYYF-SKLRILDLSNNNFT  274 (523)
Q Consensus       231 l~~l~-~L~~L~l~~n~l~~~~~~~~~--~~~l-~~L~~L~l~~n~l~  274 (523)
                      +..++ +|++|++++|.+.+..+..+.  .... ++|++|++++|.+.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            33333 555555555555433322110  0112 35555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.8e-24  Score=211.25  Aligned_cols=252  Identities=19%  Similarity=0.246  Sum_probs=145.9

Q ss_pred             CccEEEccCCCCccCCCCCC--CCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCcc-ChhhHhhcccCCcEEEc
Q 009858           94 NLEYLDLRSNLLQGPVPAPS--SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGT-IPECIGNFSKSLRVLDL  170 (523)
Q Consensus        94 ~L~~L~L~~n~l~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~~L~~L~L  170 (523)
                      .++.++++++.+.......+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+. +|++|++
T Consensus        48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEEC
T ss_pred             hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeC
Confidence            46677777776652111112  5666666666666654443 33456666666666665533 555555554 5666666


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCC-CCCC-CCCccccCCCCCcEEECCCC-cCCCC-chHhhhcCCCCCeEEecccc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGN-ELVG-SVPRSLLNCANLQVLDLGNN-KMKDT-FPHWLGTLRELQVLILRSNK  246 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~  246 (523)
                      ++|.+++..+..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++. ++..+..++           
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-----------  194 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS-----------  194 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC-----------
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc-----------
Confidence            666555444444555555555555555 3432 13333444555555555555 44422 233344444           


Q ss_pred             ccCcCCCccccccCCCCcEEeccCcc--CC-CCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858          247 FYGHLRDYEADYYFSKLRILDLSNNN--FT-GSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL  323 (523)
Q Consensus       247 l~~~~~~~~~~~~l~~L~~L~l~~n~--l~-~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (523)
                                    ++|++|++++|.  ++ +.+|                                           ..
T Consensus       195 --------------~~L~~L~l~~~~~~~~~~~l~-------------------------------------------~~  217 (336)
T 2ast_B          195 --------------ETITQLNLSGYRKNLQKSDLS-------------------------------------------TL  217 (336)
T ss_dssp             --------------TTCCEEECCSCGGGSCHHHHH-------------------------------------------HH
T ss_pred             --------------cCCCEEEeCCCcccCCHHHHH-------------------------------------------HH
Confidence                          045555555542  22 1111                                           12


Q ss_pred             HHhhcccccccCCCCc-cCcCcchhhcCcccCCeeeCcCCc-ccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCC
Q 009858          324 MKILTIFTTIDLSKNS-FHGEIPELMGKLHSLRLLNLSQNI-LSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTF  401 (523)
Q Consensus       324 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  401 (523)
                      +..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++......+.  ..
T Consensus       218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~  294 (336)
T 2ast_B          218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EA  294 (336)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HH
T ss_pred             HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hh
Confidence            2336788888888888 666777778888999999999995 33322235788999999999999 5433222222  23


Q ss_pred             CCeEECCCCcCcccCCC
Q 009858          402 LAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       402 L~~L~Ls~N~l~~~~p~  418 (523)
                      ++.|++++|++++..|.
T Consensus       295 l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          295 LPHLQINCSHFTTIARP  311 (336)
T ss_dssp             STTSEESCCCSCCTTCS
T ss_pred             CcceEEecccCccccCC
Confidence            66677899999988775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=2.2e-24  Score=212.70  Aligned_cols=259  Identities=19%  Similarity=0.197  Sum_probs=188.4

Q ss_pred             EEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccCh----hhHhhcccCCcEEEccCCcccccCCCCCCCC-----CC
Q 009858          118 VFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP----ECIGNFSKSLRVLDLRKNRFHGTIPETFPKG-----NN  188 (523)
Q Consensus       118 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l-----~~  188 (523)
                      .+.++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++.+|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788999998888877777779999999999986555    5566664369999999999987766666654     88


Q ss_pred             CCEEECcCCCCCCCCCccc----cCC-CCCcEEECCCCcCCCCchHhhhc-----CCCCCeEEeccccccCcCCCccc--
Q 009858          189 LTTLNFNGNELVGSVPRSL----LNC-ANLQVLDLGNNKMKDTFPHWLGT-----LRELQVLILRSNKFYGHLRDYEA--  256 (523)
Q Consensus       189 L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~~~--  256 (523)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+..     .++|++|++++|.+.+.......  
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999987666543    444 89999999999998776655543     36899999999988753322211  


Q ss_pred             cccCC-CCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhh-ccccccc
Q 009858          257 DYYFS-KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKIL-TIFTTID  334 (523)
Q Consensus       257 ~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~  334 (523)
                      ...++ +|++|++++|.+++..+..+...                                       +... ++|++|+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---------------------------------------l~~~~~~L~~L~  202 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKF---------------------------------------LASIPASVTSLD  202 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHH---------------------------------------HHTSCTTCCEEE
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHH---------------------------------------HHhCCCCCCEEE
Confidence            12344 89999999999885555432211                                       1123 4788888


Q ss_pred             CCCCccCcC----cchhhcC-cccCCeeeCcCCcccccCC----ccccCCCCCCEEeCCCCcCCCcCC-------hhhcC
Q 009858          335 LSKNSFHGE----IPELMGK-LHSLRLLNLSQNILSGNIP----SSLGDLTDLESLDLSSNVLDGVIP-------RELTR  398 (523)
Q Consensus       335 Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~~-------~~l~~  398 (523)
                      |++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|++|+|++|.+.+..+       ..+..
T Consensus       203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~  282 (362)
T 3goz_A          203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN  282 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred             CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence            999888853    3444544 4589999999998876443    345677889999999998554433       34567


Q ss_pred             CCCCCeEECCCCcCccc
Q 009858          399 LTFLAVLNLSRNKLEGR  415 (523)
Q Consensus       399 l~~L~~L~Ls~N~l~~~  415 (523)
                      +++|+.||+++|++...
T Consensus       283 l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          283 IQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCEEEEECTTSCBCCGG
T ss_pred             CCceEEEecCCCcCCCc
Confidence            77888899999988755

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=5.8e-25  Score=218.92  Aligned_cols=249  Identities=17%  Similarity=0.231  Sum_probs=149.3

Q ss_pred             CchhhhCCCCcCEEEccCCcCCccChhh----HhhcccCCcEEEccCCc---ccccCCCCC-------CCCCCCCEEECc
Q 009858          130 IPRLICNTSTIEILDLSNNSLSGTIPEC----IGNFSKSLRVLDLRKNR---FHGTIPETF-------PKGNNLTTLNFN  195 (523)
Q Consensus       130 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~  195 (523)
                      ++..+..+++|++|+|++|.+++..+..    +..+. +|++|+|++|.   +.+.+|..+       ..+++|++|+|+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3344555555666666665555433332    22343 55666655542   222233222       456667777777


Q ss_pred             CCCCCC----CCCccccCCCCCcEEECCCCcCCCCchHh----hhcC---------CCCCeEEeccccccC-cCCCc-cc
Q 009858          196 GNELVG----SVPRSLLNCANLQVLDLGNNKMKDTFPHW----LGTL---------RELQVLILRSNKFYG-HLRDY-EA  256 (523)
Q Consensus       196 ~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~l~~-~~~~~-~~  256 (523)
                      +|.+..    .++..+..+++|++|+|++|.+....+..    +..+         ++|++|++++|.+.. ..+.. ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            777665    34556666777777777777765333332    3333         677777777776642 22211 11


Q ss_pred             cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCC
Q 009858          257 DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLS  336 (523)
Q Consensus       257 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  336 (523)
                      ...+++|+.|++++|.++..-......                                      ..+..+++|+.|+|+
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------------------~~l~~~~~L~~L~Ls  224 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------EGLAYCQELKVLDLQ  224 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------TTGGGCTTCCEEECC
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------HHhhcCCCccEEECc
Confidence            234667777777777665110000000                                      012235778888888


Q ss_pred             CCccC----cCcchhhcCcccCCeeeCcCCccccc----CCccc--cCCCCCCEEeCCCCcCCC----cCChhh-cCCCC
Q 009858          337 KNSFH----GEIPELMGKLHSLRLLNLSQNILSGN----IPSSL--GDLTDLESLDLSSNVLDG----VIPREL-TRLTF  401 (523)
Q Consensus       337 ~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~  401 (523)
                      +|.++    ..+|..+..+++|++|+|++|.+++.    ++..+  +.+++|++|+|++|.+++    .+|..+ .++++
T Consensus       225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~  304 (386)
T 2ca6_A          225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  304 (386)
T ss_dssp             SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence            88875    45677778888888888888888764    45555  337888888888888887    366666 56788


Q ss_pred             CCeEECCCCcCcccCC
Q 009858          402 LAVLNLSRNKLEGRIP  417 (523)
Q Consensus       402 L~~L~Ls~N~l~~~~p  417 (523)
                      |+.|++++|++++..|
T Consensus       305 L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          305 LLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECTTSBSCTTSH
T ss_pred             ceEEEccCCcCCcchh
Confidence            8888998888886553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=8.5e-23  Score=189.09  Aligned_cols=206  Identities=20%  Similarity=0.223  Sum_probs=142.2

Q ss_pred             CCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCC-CCCCCCccccCCCCCcEEECCC-CcCCCCc
Q 009858          150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE-LVGSVPRSLLNCANLQVLDLGN-NKMKDTF  227 (523)
Q Consensus       150 l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~  227 (523)
                      ++ .+|. +   .++|++|++++|++++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |.+.+..
T Consensus        23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            44 5665 2   2367888888888876666677778888888888886 7655556777888888888887 7777655


Q ss_pred             hHhhhcCCCCCeEEeccccccCcCCCccccccCCCCc---EEeccCc-cCCCCCchHHHhcccccccccccccccccccc
Q 009858          228 PHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR---ILDLSNN-NFTGSLPAMFFKNMKAMTDIGEAADENKSKYM  303 (523)
Q Consensus       228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~  303 (523)
                      +..|..+++|++|++++|.+.+ +|. +  ..+++|+   +|++++| .++ .+|...+.                    
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~--------------------  152 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQ--------------------  152 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCC-EECTTTTT--------------------
T ss_pred             HHHhCCCCCCCEEeCCCCCCcc-ccc-c--ccccccccccEEECCCCcchh-hcCccccc--------------------
Confidence            5677778888888888887765 333 2  4455565   7888877 665 33432222                    


Q ss_pred             CccccccceEEEecchhHHHHHhhcccc-cccCCCCccCcCcchhhcCcccCCeeeCcCCc-ccccCCccccCC-CCCCE
Q 009858          304 GETYYEDSVTLIIKRQEVKLMKILTIFT-TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI-LSGNIPSSLGDL-TDLES  380 (523)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~  380 (523)
                                            .+++|+ .|++++|.++ .+|......++|++|+|++|+ +++..+..|..+ ++|++
T Consensus       153 ----------------------~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~  209 (239)
T 2xwt_C          153 ----------------------GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL  209 (239)
T ss_dssp             ----------------------TTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred             ----------------------chhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence                                  256677 7788888877 444433333788888888884 776666777888 88888


Q ss_pred             EeCCCCcCCCcCChhhcCCCCCCeEECCCCc
Q 009858          381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNK  411 (523)
Q Consensus       381 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~  411 (523)
                      |++++|++++..+.   .+++|+.|+++++.
T Consensus       210 L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          210 LDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             EECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             EECCCCccccCChh---HhccCceeeccCcc
Confidence            88888888755443   56678888887663

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=6e-25  Score=231.64  Aligned_cols=319  Identities=10%  Similarity=0.051  Sum_probs=195.0

Q ss_pred             CCCCccEEEccCCCCccCCC-------CCCCCCcEEEccCCcCCC----cCchhhhCCCCcCEEEccCCcCCccChhhHh
Q 009858           91 PWKNLEYLDLRSNLLQGPVP-------APSSNMRVFLISNNKFIG----EIPRLICNTSTIEILDLSNNSLSGTIPECIG  159 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~-------~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  159 (523)
                      .+++|++|+|++|.+++...       ..+++|+.|++++|.+++    .++..+.++++|++|++++|.+. .+|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh
Confidence            46788888888888765422       227888888888888762    33445567888888888888887 5777788


Q ss_pred             hcccCCcEEEccCCccc---ccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCC
Q 009858          160 NFSKSLRVLDLRKNRFH---GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLR  235 (523)
Q Consensus       160 ~l~~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~  235 (523)
                      .+. +|++|+++.+...   ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+.+... ..+..++
T Consensus       241 ~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          241 AAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             hhh-HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            876 7888888753322   23334566677788888777533 3566667778888888888887654332 3356777


Q ss_pred             CCCeEEeccccccCcCCCccccccCCCCcEEeccC-----------ccCCCCCchHHHhccccccccccccccccccccC
Q 009858          236 ELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN-----------NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMG  304 (523)
Q Consensus       236 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~  304 (523)
                      +|++|+++++...+..+...  ..+++|++|++++           +.+++.....+...+++|+.+++..+........
T Consensus       319 ~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~  396 (592)
T 3ogk_B          319 NLEVLETRNVIGDRGLEVLA--QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE  396 (592)
T ss_dssp             TCCEEEEEGGGHHHHHHHHH--HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred             CCCEEeccCccCHHHHHHHH--HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence            78888777332111111111  3456677777772           3444322233345566666666532222111000


Q ss_pred             c--cccccceEEEe---------cc-----hhHHHHHhhcccccccCCCCc--cCcCcchhh-cCcccCCeeeCcCCccc
Q 009858          305 E--TYYEDSVTLII---------KR-----QEVKLMKILTIFTTIDLSKNS--FHGEIPELM-GKLHSLRLLNLSQNILS  365 (523)
Q Consensus       305 ~--~~~~~~~~~~~---------~~-----~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~Ls~n~l~  365 (523)
                      .  ........+..         ..     .....+..+++|++|++++|.  +++..+..+ ..+++|++|+|++|+++
T Consensus       397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~  476 (592)
T 3ogk_B          397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES  476 (592)
T ss_dssp             HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred             HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence            0  00000111111         11     122334557888888887543  554444444 34778888888888887


Q ss_pred             c-cCCccccCCCCCCEEeCCCCcCCCc-CChhhcCCCCCCeEECCCCcCcc
Q 009858          366 G-NIPSSLGDLTDLESLDLSSNVLDGV-IPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       366 ~-~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      + .++..+..+++|++|+|++|.+++. ++..+..+++|++|++++|+++.
T Consensus       477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            5 3445557788888888888887654 33444678888888888888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=6.4e-23  Score=197.70  Aligned_cols=224  Identities=19%  Similarity=0.208  Sum_probs=146.7

Q ss_pred             CCccEEEccCCCCccCCCC------CCCCCcEEEccCCcCCCcCchhh--hCCCCcCEEEccCCcCCccCh----hhHhh
Q 009858           93 KNLEYLDLRSNLLQGPVPA------PSSNMRVFLISNNKFIGEIPRLI--CNTSTIEILDLSNNSLSGTIP----ECIGN  160 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~  160 (523)
                      ..++.+.+.++.++.....      .+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4567777777766532111      15668888888888887777776  778888888888888875444    23344


Q ss_pred             cccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCC--C--CccccCCCCCcEEECCCCcCCCCchH----hhh
Q 009858          161 FSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS--V--PRSLLNCANLQVLDLGNNKMKDTFPH----WLG  232 (523)
Q Consensus       161 l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~  232 (523)
                      +. +|++|++++|.+.+..+..|..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++. ++.    .+.
T Consensus       144 ~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  221 (310)
T 4glp_A          144 KP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA  221 (310)
T ss_dssp             CS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred             cc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence            54 788888888888777777788888888888888876532  1  2233567788888888887752 333    245


Q ss_pred             cCCCCCeEEeccccccCcCCCccc-cccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccc
Q 009858          233 TLRELQVLILRSNKFYGHLRDYEA-DYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDS  311 (523)
Q Consensus       233 ~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  311 (523)
                      .+++|++|++++|.+.+..|..+. ...                                                    
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~----------------------------------------------------  249 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMW----------------------------------------------------  249 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCC----------------------------------------------------
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccC----------------------------------------------------
Confidence            667777777777776655433221 011                                                    


Q ss_pred             eEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 009858          312 VTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG  390 (523)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  390 (523)
                                     +++|++|+|++|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|+|++|++++
T Consensus       250 ---------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 ---------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ---------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ---------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence                           245555566666665 4454442  5777788888777743 33 5677788888888887764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=3.3e-22  Score=186.53  Aligned_cols=120  Identities=24%  Similarity=0.282  Sum_probs=75.0

Q ss_pred             cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858          328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL  407 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  407 (523)
                      ++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus       107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  186 (251)
T 3m19_A          107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL  186 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            34444445555555444445667778888888888888666667888888888888888888777778888888888888


Q ss_pred             CCCcCcccCCCCCCCCc------ccCCccCCCCCCCCCCCCCCCCCC
Q 009858          408 SRNKLEGRIPEGNQFAT------FSSDSYGGNLGLCGFPLSKNCSND  448 (523)
Q Consensus       408 s~N~l~~~~p~~~~~~~------~~~~~~~gn~~lc~~~~~~~c~~~  448 (523)
                      ++|++++..+....+..      .......|+ .+|+.|....|..+
T Consensus       187 ~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          187 FGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             CSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             eCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            88888865333211111      111122333 35666777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=9.6e-22  Score=183.36  Aligned_cols=181  Identities=18%  Similarity=0.193  Sum_probs=160.7

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      ...++++++++.++..++...++++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+. +|++|++++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~   92 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLAN   92 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTT
T ss_pred             CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCC
Confidence            3567899999999876666678999999999999988888999999999999999999977777788887 899999999


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      |.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            99998888889999999999999999997777778999999999999999997777789999999999999999987776


Q ss_pred             CccccccCCCCcEEeccCccCCCC
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGS  276 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~  276 (523)
                      ..+  ..+++|+.|++++|.+.+.
T Consensus       173 ~~~--~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          173 GAF--DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTT--TTCTTCCEEECCSCCBCTT
T ss_pred             HHH--hCCCCCCEEEeeCCceeCC
Confidence            655  6689999999999999755

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=5.5e-24  Score=207.83  Aligned_cols=177  Identities=15%  Similarity=0.189  Sum_probs=149.2

Q ss_pred             CCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCc-CchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           93 KNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGE-IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      ++++.|++++|.+.+..+..  +++|++|++++|.+++. ++..+..+++|++|++++|.+++..|..+..+. +|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~-~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT-TCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC-CCCEEE
Confidence            78999999999999877765  89999999999998865 778899999999999999999988899999987 899999


Q ss_pred             ccCC-ccccc-CCCCCCCCCCCCEEECcCC-CCCCC-CCccccCCC-CCcEEECCCC--cCC-CCchHhhhcCCCCCeEE
Q 009858          170 LRKN-RFHGT-IPETFPKGNNLTTLNFNGN-ELVGS-VPRSLLNCA-NLQVLDLGNN--KMK-DTFPHWLGTLRELQVLI  241 (523)
Q Consensus       170 L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~  241 (523)
                      +++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9999 67753 5666778999999999999 88754 566788899 9999999999  455 45677888899999999


Q ss_pred             ecccc-ccCcCCCccccccCCCCcEEeccCcc
Q 009858          242 LRSNK-FYGHLRDYEADYYFSKLRILDLSNNN  272 (523)
Q Consensus       242 l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~  272 (523)
                      +++|. +.+..+..+  ..+++|++|++++|.
T Consensus       229 l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          229 LSDSVMLKNDCFQEF--FQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCTTCCGGGGGGG--GGCTTCCEEECTTCT
T ss_pred             CCCCCcCCHHHHHHH--hCCCCCCEeeCCCCC
Confidence            99998 554444433  557888888888875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.1e-23  Score=209.80  Aligned_cols=235  Identities=20%  Similarity=0.280  Sum_probs=152.5

Q ss_pred             CCCCcEEEccCCcCCCcCc----hhhhCCCCcCEEEccCC---cCCccChhhH-------hhcccCCcEEEccCCcccc-
Q 009858          113 SSNMRVFLISNNKFIGEIP----RLICNTSTIEILDLSNN---SLSGTIPECI-------GNFSKSLRVLDLRKNRFHG-  177 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~~L~~L~L~~n~l~~-  177 (523)
                      +++|+.|++++|.++...+    ..+..+++|++|+|++|   ++++.+|..+       ..+. +|++|+|++|.+.+ 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPT  109 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHH
Confidence            4555555555555554322    23445666666666664   3334445444       3444 67777777776664 


Q ss_pred             ---cCCCCCCCCCCCCEEECcCCCCCCCCCcc----ccCC---------CCCcEEECCCCcCC-CCch---HhhhcCCCC
Q 009858          178 ---TIPETFPKGNNLTTLNFNGNELVGSVPRS----LLNC---------ANLQVLDLGNNKMK-DTFP---HWLGTLREL  237 (523)
Q Consensus       178 ---~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~L~~n~l~-~~~~---~~l~~l~~L  237 (523)
                         .+|..+..+++|++|+|++|.++...+..    +..+         ++|++|++++|.+. ..++   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               24445556667777777777665332222    2233         77888888887776 3344   456677788


Q ss_pred             CeEEeccccccC-----cCCCccccccCCCCcEEeccCccCCC----CCchHHHhccccccccccccccccccccCcccc
Q 009858          238 QVLILRSNKFYG-----HLRDYEADYYFSKLRILDLSNNNFTG----SLPAMFFKNMKAMTDIGEAADENKSKYMGETYY  308 (523)
Q Consensus       238 ~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  308 (523)
                      ++|++++|.+..     ..+..+  ..+++|+.|++++|.++.    .+|.                             
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~-----------------------------  238 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAI-----------------------------  238 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHH-----------------------------
T ss_pred             CEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHH-----------------------------
Confidence            888888887652     122122  557888888888887751    1221                             


Q ss_pred             ccceEEEecchhHHHHHhhcccccccCCCCccCcC----cchhhc--CcccCCeeeCcCCcccc----cCCccc-cCCCC
Q 009858          309 EDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE----IPELMG--KLHSLRLLNLSQNILSG----NIPSSL-GDLTD  377 (523)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~Ls~n~l~~----~~p~~~-~~l~~  377 (523)
                                    .+..+++|++|+|++|.+++.    ++..+.  .+++|++|+|++|.+++    .+|..+ .++++
T Consensus       239 --------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~  304 (386)
T 2ca6_A          239 --------------ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  304 (386)
T ss_dssp             --------------HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             --------------HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence                          122367888999999998865    456663  48999999999999997    477766 66899


Q ss_pred             CCEEeCCCCcCCCcCC
Q 009858          378 LESLDLSSNVLDGVIP  393 (523)
Q Consensus       378 L~~L~Ls~n~l~~~~~  393 (523)
                      |++|+|++|.+++..+
T Consensus       305 L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          305 LLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECTTSBSCTTSH
T ss_pred             ceEEEccCCcCCcchh
Confidence            9999999999997764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.1e-21  Score=188.65  Aligned_cols=80  Identities=19%  Similarity=0.304  Sum_probs=44.3

Q ss_pred             cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858          328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL  407 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  407 (523)
                      ++|+.|++++|.+++ ++. +..+++|++|++++|.+++.. . +..+++|++|+|++|++++..  .+..+++|+.|++
T Consensus       151 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l  224 (308)
T 1h6u_A          151 TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS-P-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL  224 (308)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEE
T ss_pred             CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh-h-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEc
Confidence            444455555555542 222 455556666666666665322 2 555666666666666666443  2556666666666


Q ss_pred             CCCcCc
Q 009858          408 SRNKLE  413 (523)
Q Consensus       408 s~N~l~  413 (523)
                      ++|+++
T Consensus       225 ~~N~i~  230 (308)
T 1h6u_A          225 TNQTIT  230 (308)
T ss_dssp             EEEEEE
T ss_pred             cCCeee
Confidence            666665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=3.6e-22  Score=184.82  Aligned_cols=200  Identities=19%  Similarity=0.217  Sum_probs=118.7

Q ss_pred             CCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCc-CCccChhhHhhcccCCcEEEccC-CcccccCCCCCCCCCCC
Q 009858          112 PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS-LSGTIPECIGNFSKSLRVLDLRK-NRFHGTIPETFPKGNNL  189 (523)
Q Consensus       112 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~~L~~L~L~~-n~l~~~~p~~~~~l~~L  189 (523)
                      ..++|++|++++|++++..+..|.++++|++|++++|+ +++..+..+..+. +|++|++++ |.+++..+..|.++++|
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            44466666666666665555566666666666666665 5522233444554 566666665 66665544555556666


Q ss_pred             CEEECcCCCCCCCCCccccCCCCCc---EEECCCC-cCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCc-
Q 009858          190 TTLNFNGNELVGSVPRSLLNCANLQ---VLDLGNN-KMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLR-  264 (523)
Q Consensus       190 ~~L~L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-  264 (523)
                      ++|++++|.+++ +|. +..+++|+   +|++++| .+.+..+..|..                          +++|+ 
T Consensus       108 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--------------------------l~~L~~  159 (239)
T 2xwt_C          108 KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG--------------------------LCNETL  159 (239)
T ss_dssp             CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT--------------------------TBSSEE
T ss_pred             CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc--------------------------hhccee
Confidence            666666665553 343 44455554   5555555 444333333444                          45555 


Q ss_pred             EEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCc-cCcC
Q 009858          265 ILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNS-FHGE  343 (523)
Q Consensus       265 ~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~  343 (523)
                      .|++++|.++ .+|...+.                                           .++|+.|++++|. +++.
T Consensus       160 ~L~l~~n~l~-~i~~~~~~-------------------------------------------~~~L~~L~L~~n~~l~~i  195 (239)
T 2xwt_C          160 TLKLYNNGFT-SVQGYAFN-------------------------------------------GTKLDAVYLNKNKYLTVI  195 (239)
T ss_dssp             EEECCSCCCC-EECTTTTT-------------------------------------------TCEEEEEECTTCTTCCEE
T ss_pred             EEEcCCCCCc-ccCHhhcC-------------------------------------------CCCCCEEEcCCCCCcccC
Confidence            5555555554 44432221                                           2467777788884 7755


Q ss_pred             cchhhcCc-ccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCc
Q 009858          344 IPELMGKL-HSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNV  387 (523)
Q Consensus       344 ~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  387 (523)
                      .+..+..+ ++|+.|++++|++++ +|..  .+++|+.|+++++.
T Consensus       196 ~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          196 DKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            56677788 889999999988884 4443  57788888888763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=6.3e-21  Score=183.29  Aligned_cols=124  Identities=20%  Similarity=0.307  Sum_probs=60.2

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL  192 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (523)
                      +++|+.|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+. +|++|++++|.+++. + .+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~-~L~~L~L~~n~l~~~-~-~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLT-KITELELSGNPLKNV-S-AIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCC-SCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCC-CCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence            3444444444444432 22 3455555555555555555 3333 44444 455555555555532 2 34555555555


Q ss_pred             ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      ++++|.+++ ++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus       113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A          113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence            555555543 22 24555555555555555543222  44444444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=6.4e-21  Score=186.85  Aligned_cols=181  Identities=17%  Similarity=0.096  Sum_probs=118.3

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhh-HhhcccCCc-EEEccCC
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPEC-IGNFSKSLR-VLDLRKN  173 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~~L~-~L~L~~n  173 (523)
                      ++++.++++++.++....+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|.. |..+. +|+ .+.+..|
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCC
Confidence            56788888887654444678888888888888666677888888888888888876566653 44555 454 4566678


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC-CcCCCCchHhhhcCC-CCCeEEeccccccCcC
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN-NKMKDTFPHWLGTLR-ELQVLILRSNKFYGHL  251 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~  251 (523)
                      +++...|..|..+++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.+....
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            88877777888888888888888888766555666666777777755 445433334444443 4666666666665443


Q ss_pred             CCccccccCCCCcEEeccCccCCCCCchH
Q 009858          252 RDYEADYYFSKLRILDLSNNNFTGSLPAM  280 (523)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  280 (523)
                      +..+   ...+|+.++++++...+.+|..
T Consensus       171 ~~~f---~~~~L~~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          171 NSAF---NGTQLDELNLSDNNNLEELPND  196 (350)
T ss_dssp             TTSS---TTEEEEEEECTTCTTCCCCCTT
T ss_pred             hhhc---cccchhHHhhccCCcccCCCHH
Confidence            3332   2345566666543222244443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=1.2e-20  Score=184.87  Aligned_cols=240  Identities=22%  Similarity=0.223  Sum_probs=165.9

Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEEEccCCcccccCC-CCCCCCCCCCE-EE
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVLDLRKNRFHGTIP-ETFPKGNNLTT-LN  193 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~  193 (523)
                      +.++.++++++ .+|..+  .+++++|+|++|+|+ .+|. .|..+. +|++|+|++|++.+.+| ..|.+++++++ +.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            56777888877 556555  357888888888888 5654 466776 78888888888765444 46778877765 55


Q ss_pred             CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccc-cccCcCCCccccccCCCCcEEeccCcc
Q 009858          194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN-KFYGHLRDYEADYYFSKLRILDLSNNN  272 (523)
Q Consensus       194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~  272 (523)
                      +..|++....|..|..+++|++|++++|.+....+..+....++..|++.++ .+....+..+. .....++.|++++|.
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVILWLNKNG  165 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST-TSBSSCEEEECCSSC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh-hcchhhhhhcccccc
Confidence            6678888777778888888888888888887665556666677778887664 44333333331 223467888888888


Q ss_pred             CCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCC-CccCcCcchhhcCc
Q 009858          273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSK-NSFHGEIPELMGKL  351 (523)
Q Consensus       273 l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l  351 (523)
                      ++ .+|...|.                                           ..+|+.+++++ |.++...++.|..+
T Consensus       166 i~-~i~~~~f~-------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~l  201 (350)
T 4ay9_X          166 IQ-EIHNSAFN-------------------------------------------GTQLDELNLSDNNNLEELPNDVFHGA  201 (350)
T ss_dssp             CC-EECTTSST-------------------------------------------TEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred             cc-CCChhhcc-------------------------------------------ccchhHHhhccCCcccCCCHHHhccC
Confidence            87 45544332                                           35677888875 56664444677888


Q ss_pred             ccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCC
Q 009858          352 HSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN  410 (523)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  410 (523)
                      ++|++|+|++|+++. +|.  ..+.+|+.|.+.++.-...+| .+.++++|+.++++++
T Consensus       202 ~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          202 SGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             ECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             cccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            999999999999884 443  234566777766655444666 3778888999988764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=2.6e-20  Score=168.40  Aligned_cols=175  Identities=18%  Similarity=0.164  Sum_probs=147.6

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcc
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRF  175 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l  175 (523)
                      +.++++++.++..+....++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+. +|++|++++|.+
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcC
Confidence            5677888888776666678899999999999877777788999999999999999844444556776 899999999999


Q ss_pred             cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCcc
Q 009858          176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE  255 (523)
Q Consensus       176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  255 (523)
                      ++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.       
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------  161 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------  161 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------
Confidence            9777777889999999999999998777777889999999999999998777777889999999999999765       


Q ss_pred             ccccCCCCcEEeccCccCCCCCchH
Q 009858          256 ADYYFSKLRILDLSNNNFTGSLPAM  280 (523)
Q Consensus       256 ~~~~l~~L~~L~l~~n~l~~~~p~~  280 (523)
                        ..+++|++|+++.|.++|.+|..
T Consensus       162 --~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             --CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             --cCCCCHHHHHHHHHhCCceeecc
Confidence              33678899999999999988854

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=4.6e-20  Score=166.78  Aligned_cols=152  Identities=22%  Similarity=0.209  Sum_probs=93.5

Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG  196 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (523)
                      +.++.+++.++. +|..+  .++|++|++++|++++..+..+..+. +|++|++++|++++..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            455666666653 33332  34677777777777643333445555 677777777777755555566677777777777


Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858          197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      |++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+  ..+++|+.|++++|.+.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCee
Confidence            77765555556667777777777777665555556666667777776666655444333  44556666666666544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=1.3e-21  Score=206.01  Aligned_cols=317  Identities=11%  Similarity=0.061  Sum_probs=176.0

Q ss_pred             CCCCcEEEccCCcCCCc----CchhhhCCCCcCEEEccCCcCC----ccChhhHhhcccCCcEEEccCCcccccCCCCCC
Q 009858          113 SSNMRVFLISNNKFIGE----IPRLICNTSTIEILDLSNNSLS----GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFP  184 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~  184 (523)
                      +++|++|++++|.+++.    ++..+..+++|++|++++|.++    +.++..+..++ +|++|++++|.+.+ +|..+.
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HHHHHh
Confidence            44555555555544333    2222334455555555555543    12233333333 45555555555442 333444


Q ss_pred             CCCCCCEEECcCCCCC---CCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCC
Q 009858          185 KGNNLTTLNFNGNELV---GSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS  261 (523)
Q Consensus       185 ~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  261 (523)
                      .+++|++|+++.....   ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+.+..... ....++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~-~~~~~~  318 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQKCP  318 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHH-HHTTCT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHH-HHHhCc
Confidence            4555555555432211   12233455566666666666432 356777778888899999888754322111 125678


Q ss_pred             CCcEEeccCccCCCCCchHHHhcccccccccccc----------ccccc-cccCc--ccccc--ceEEEecc---hhHHH
Q 009858          262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAA----------DENKS-KYMGE--TYYED--SVTLIIKR---QEVKL  323 (523)
Q Consensus       262 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~----------~~~~~-~~~~~--~~~~~--~~~~~~~~---~~~~~  323 (523)
                      +|+.|+++ +.+.......+...+++|+.|++..          +.... .....  ..+..  ........   .....
T Consensus       319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred             CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence            89999888 4444333345567778888888873          21111 00000  00111  11121122   22222


Q ss_pred             H-HhhcccccccCC----CCccCcC-----cchhhcCcccCCeeeCcCCc--ccccCCcccc-CCCCCCEEeCCCCcCCC
Q 009858          324 M-KILTIFTTIDLS----KNSFHGE-----IPELMGKLHSLRLLNLSQNI--LSGNIPSSLG-DLTDLESLDLSSNVLDG  390 (523)
Q Consensus       324 ~-~~~~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~-~l~~L~~L~Ls~n~l~~  390 (523)
                      + ..+++|+.|+++    .|.+++.     ++..+..+++|++|+|++|.  +++..+..+. .+++|++|+|++|.+++
T Consensus       398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  477 (592)
T 3ogk_B          398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD  477 (592)
T ss_dssp             HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred             HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence            2 337788888886    5667643     33446678889999997654  5554444443 47899999999999886


Q ss_pred             c-CChhhcCCCCCCeEECCCCcCcccC-CCC-CCCCcccCCccCCCC
Q 009858          391 V-IPRELTRLTFLAVLNLSRNKLEGRI-PEG-NQFATFSSDSYGGNL  434 (523)
Q Consensus       391 ~-~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~-~~~~~~~~~~~~gn~  434 (523)
                      . ++..+.++++|++|++++|++++.. +.. ..+..+..+.+.+|.
T Consensus       478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            3 4455678899999999999987442 211 234556666666665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.2e-20  Score=191.39  Aligned_cols=43  Identities=21%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             CeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC
Q 009858          355 RLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR  398 (523)
Q Consensus       355 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  398 (523)
                      +.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            55555555555 34444444555555555555555555544443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.4e-19  Score=186.59  Aligned_cols=182  Identities=26%  Similarity=0.416  Sum_probs=124.5

Q ss_pred             CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858          164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR  243 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  243 (523)
                      +|++|++++|.+++ +|..+.  ++|++|++++|+++ .+|   ..+++|++|++++|.+++ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            46666666666654 444332  45666666666665 344   335666666666666664 444 433  66666666


Q ss_pred             cccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858          244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL  323 (523)
Q Consensus       244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (523)
                      +|.+.+ +|.     .+++|+.|++++|.+++ +|..                                           
T Consensus       129 ~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~~-------------------------------------------  158 (571)
T 3cvr_A          129 NNQLTM-LPE-----LPALLEYINADNNQLTM-LPEL-------------------------------------------  158 (571)
T ss_dssp             SSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCCC-------------------------------------------
T ss_pred             CCcCCC-CCC-----cCccccEEeCCCCccCc-CCCc-------------------------------------------
Confidence            666655 222     35677777777777763 4420                                           


Q ss_pred             HHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCC-------CEEeCCCCcCCCcCChhh
Q 009858          324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDL-------ESLDLSSNVLDGVIPREL  396 (523)
Q Consensus       324 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~~~~l  396 (523)
                         +++|+.|+|++|.+++ +|. +.  ++|+.|+|++|.++ .+|. |..  +|       +.|+|++|+++ .+|..+
T Consensus       159 ---l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          159 ---PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             ---CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred             ---CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence               4677888888888885 665 54  88999999999998 6666 554  67       99999999999 467777


Q ss_pred             cCCCCCCeEECCCCcCcccCCC
Q 009858          397 TRLTFLAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       397 ~~l~~L~~L~Ls~N~l~~~~p~  418 (523)
                      ..+++|+.|+|++|++++.+|.
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHH
Confidence            7899999999999999988774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=3.7e-19  Score=162.02  Aligned_cols=152  Identities=22%  Similarity=0.241  Sum_probs=116.2

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcc
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRF  175 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l  175 (523)
                      +.++++++.++..+....++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..+..+. +|++|+|++|.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcC
Confidence            5678888888765555567888888888888877777788888888888888888866677777776 788888888888


Q ss_pred             cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858          176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY  248 (523)
Q Consensus       176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  248 (523)
                      +...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+.+..+..+..+++|+.|++++|++.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            8666666777888888888888887777777778888888888888877666666777777777777777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2.7e-19  Score=162.89  Aligned_cols=151  Identities=19%  Similarity=0.231  Sum_probs=88.6

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCc-hhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIP-RLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR  174 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~  174 (523)
                      +++++++|.++..+....+.+++|++++|.+++..+ ..|.++++|++|++++|.+++..+..+..+. +|++|+|++|.
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCc
Confidence            467777777765443335556666666666665533 3455666666666666666644444555554 56666666666


Q ss_pred             ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      +++..+..|..+++|++|++++|++++..|..|.++++|++|+|++|.+++..|..|..+++|+.|++++|++
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            6655555555666666666666666655555566666666666666666555555555555555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=3.2e-21  Score=203.28  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             HhhcccccccCCCCccCcCcchhhcC-cccCCeeeCcCCcccccCCccc-cCCCCCCEEeCCCCcCCCcCCh-hhcCCCC
Q 009858          325 KILTIFTTIDLSKNSFHGEIPELMGK-LHSLRLLNLSQNILSGNIPSSL-GDLTDLESLDLSSNVLDGVIPR-ELTRLTF  401 (523)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~  401 (523)
                      ..+++|+.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3455566666655 444333333333 5566666666666554333333 4456666666666666433222 2234566


Q ss_pred             CCeEECCCCcCc
Q 009858          402 LAVLNLSRNKLE  413 (523)
Q Consensus       402 L~~L~Ls~N~l~  413 (523)
                      |+.|++++|+++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            666666666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=5.2e-19  Score=173.96  Aligned_cols=177  Identities=23%  Similarity=0.153  Sum_probs=139.9

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhh-CCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLIC-NTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR  174 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~  174 (523)
                      ++++++++.++..+....+.++.|+|++|.+++..+..|. ++++|++|+|++|++++..+..+..+. +|++|+|++|+
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCc
Confidence            5788888888875555577788999999999877777777 889999999999999855556787887 79999999999


Q ss_pred             ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhh---hcCCCCCeEEeccccccCcC
Q 009858          175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWL---GTLRELQVLILRSNKFYGHL  251 (523)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~~~  251 (523)
                      ++...+..|..+++|++|+|++|++.+..+..|.++++|++|+|++|.+.+..+..+   ..+++|+.|++++|.+.+..
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            987777788889999999999999988778888899999999999999886544444   56888888888888887544


Q ss_pred             CCccccccCCC--CcEEeccCccCCC
Q 009858          252 RDYEADYYFSK--LRILDLSNNNFTG  275 (523)
Q Consensus       252 ~~~~~~~~l~~--L~~L~l~~n~l~~  275 (523)
                      +..+  ..++.  ++.|++++|.+..
T Consensus       180 ~~~~--~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          180 LTDL--QKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             HHHH--HHSCHHHHTTEECCSSCEEC
T ss_pred             HHHh--hhccHhhcceEEecCCCccC
Confidence            3333  34555  4778888888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.5e-18  Score=157.57  Aligned_cols=153  Identities=22%  Similarity=0.265  Sum_probs=114.7

Q ss_pred             CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccCh-hhHhhcccCCcEEEccC
Q 009858           94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP-ECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~~L~~L~L~~  172 (523)
                      .-+.++++++.++..+....++|++|++++|.+++..|..|.++++|++|+|++|+++ .+| ..+..+. +|++|+|++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~-~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLT-QLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCC-CcCEEECCC
Confidence            3567888888887666555788888888888888777778888888888888888887 444 4455665 788888888


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      |++++..+..|..+++|++|++++|++. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            8888666666777888888888888877 667777777888888888887776555666677777777777776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1e-18  Score=166.27  Aligned_cols=168  Identities=20%  Similarity=0.287  Sum_probs=139.8

Q ss_pred             CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      +++|+.|++++|.+....... +++|+.|++++|.+++..+  +.++++|++|++++|.++ .+| .+..+. +|++|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~-~l~~l~-~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLK-KLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCT-TCCEEEC
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh-hhccCC-CCCEEEC
Confidence            478999999999987664322 8999999999999986554  889999999999999998 454 477777 8999999


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|++++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence            99999854  4578889999999999999854  578899999999999999986554  88999999999999988764


Q ss_pred             CCCccccccCCCCcEEeccCccCC
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      .    ....+++|+.|++++|.+.
T Consensus       194 ~----~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          194 R----ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             G----GGTTCTTCSEEEEEEEEEE
T ss_pred             h----hhccCCCCCEEECcCCccc
Confidence            2    2366899999999999887

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.4e-18  Score=154.91  Aligned_cols=161  Identities=18%  Similarity=0.178  Sum_probs=140.6

Q ss_pred             CcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858          116 MRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF  194 (523)
Q Consensus       116 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  194 (523)
                      -+.+++++|.++. +|..+  ...+++|++++|++++..|. .+..+. +|++|++++|++++..+..|.++++|++|++
T Consensus        13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            3689999999984 56555  34678999999999955443 467777 8999999999999888889999999999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858          195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      ++|.+++..+..|.++++|++|+|++|.+.+..|..|..+++|+.|++++|.+.+..+..+  ..+++|+.|++++|.+.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEE
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCc
Confidence            9999998888889999999999999999998889999999999999999999998878776  67899999999999998


Q ss_pred             CCCchHHH
Q 009858          275 GSLPAMFF  282 (523)
Q Consensus       275 ~~~p~~~~  282 (523)
                      +..+..++
T Consensus       167 c~c~l~~l  174 (220)
T 2v70_A          167 CNCYLAWL  174 (220)
T ss_dssp             CSGGGHHH
T ss_pred             CCCchHHH
Confidence            77665444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=4.7e-18  Score=154.69  Aligned_cols=158  Identities=22%  Similarity=0.264  Sum_probs=137.7

Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG  196 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (523)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..+..+. +|++|+|++|++++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            67899999988 4555543  6899999999999955555788887 899999999999988899999999999999999


Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC
Q 009858          197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS  276 (523)
Q Consensus       197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  276 (523)
                      |.++...+..|.++++|++|+|++|.+.+..|..|..+++|+.|++++|.+.+..+..+  ..+++|+.|++++|.+...
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCC
Confidence            99997666778999999999999999998889999999999999999999988777666  6689999999999998754


Q ss_pred             CchH
Q 009858          277 LPAM  280 (523)
Q Consensus       277 ~p~~  280 (523)
                      -...
T Consensus       168 c~l~  171 (220)
T 2v9t_B          168 CHLK  171 (220)
T ss_dssp             GGGH
T ss_pred             CccH
Confidence            4433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.1e-18  Score=171.77  Aligned_cols=163  Identities=26%  Similarity=0.278  Sum_probs=124.5

Q ss_pred             CcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHh-hcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858          116 MRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIG-NFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF  194 (523)
Q Consensus       116 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  194 (523)
                      -+.++++++.++. +|..+.  ..++.|+|++|++++..+..+. .+. +|++|+|++|++++..+..|..+++|++|+|
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            3678888888874 555443  4588899999998854444454 666 7999999999998777778888899999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCcccc-ccCCCCcEEeccCccC
Q 009858          195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD-YYFSKLRILDLSNNNF  273 (523)
Q Consensus       195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l  273 (523)
                      ++|++....+..|.++++|++|+|++|.+.+..|..|..+++|+.|++++|.+.+..+..+.. ..+++|+.|++++|.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            999988777777888899999999999988777888888899999999998887654443311 3578888888888888


Q ss_pred             CCCCchHHHh
Q 009858          274 TGSLPAMFFK  283 (523)
Q Consensus       274 ~~~~p~~~~~  283 (523)
                      + .+|...+.
T Consensus       176 ~-~l~~~~~~  184 (361)
T 2xot_A          176 K-KLPLTDLQ  184 (361)
T ss_dssp             C-CCCHHHHH
T ss_pred             C-ccCHHHhh
Confidence            7 55644443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=1.1e-19  Score=191.41  Aligned_cols=108  Identities=15%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             hhcccccccCC--C----CccCcC-----cchhhcCcccCCeeeCcCCcccccCCccccC-CCCCCEEeCCCCcCCCcCC
Q 009858          326 ILTIFTTIDLS--K----NSFHGE-----IPELMGKLHSLRLLNLSQNILSGNIPSSLGD-LTDLESLDLSSNVLDGVIP  393 (523)
Q Consensus       326 ~~~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~  393 (523)
                      .+++|+.|+++  +    +.+++.     ++..+..+++|++|+|++ .+++..+..+.. +++|++|+|++|.+++..+
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence            35666777766  3    344421     112245566777777765 455444444443 6778888888887765544


Q ss_pred             hhh-cCCCCCCeEECCCCcCcccCCC--CCCCCcccCCccCCCC
Q 009858          394 REL-TRLTFLAVLNLSRNKLEGRIPE--GNQFATFSSDSYGGNL  434 (523)
Q Consensus       394 ~~l-~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~~~~~~~~gn~  434 (523)
                      ..+ ..+++|++|++++|++++..+.  ...+..+..+.+.+|+
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            444 5677888888888887533221  1223455555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=3.3e-18  Score=178.35  Aligned_cols=167  Identities=23%  Similarity=0.292  Sum_probs=130.5

Q ss_pred             CCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858           93 KNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR  171 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~  171 (523)
                      ..+..+.+..+.+....+.. +++|+.|++++|.+... + .+..+++|+.|+|++|.++ .++. +..+. +|++|+|+
T Consensus        21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~-~L~~L~Ls   95 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLK-NLGWLFLD   95 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG-GGGCT-TCCEEECC
T ss_pred             HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh-hccCC-CCCEEECc
Confidence            45566677777776655544 88899999999988743 3 5888999999999999998 4544 77777 79999999


Q ss_pred             CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858          172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL  251 (523)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  251 (523)
                      +|.+.+ +| .+..+++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+..
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            998884 33 68888899999999998875 3 4578889999999999988864  56788888888888888887665


Q ss_pred             CCccccccCCCCcEEeccCccCC
Q 009858          252 RDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      +    ...+++|+.|+|++|.+.
T Consensus       170 ~----l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          170 P----LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             G----GTTCTTCCEEECCSSCCC
T ss_pred             h----hccCCCCCEEECcCCCCC
Confidence            5    256788888888888776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.6e-18  Score=163.49  Aligned_cols=140  Identities=23%  Similarity=0.319  Sum_probs=71.1

Q ss_pred             EEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCccc
Q 009858           98 LDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH  176 (523)
Q Consensus        98 L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~  176 (523)
                      +.+..+.+++..+.. +++|+.|++++|.+... + .+..+++|++|++++|+++ .++. +..+. +|++|++++|.++
T Consensus        29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~-~L~~L~l~~n~l~  103 (291)
T 1h6t_A           29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LANLK-NLGWLFLDENKVK  103 (291)
T ss_dssp             HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTCT-TCCEEECCSSCCC
T ss_pred             HHhcCCCcccccchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cccCC-CCCEEECCCCcCC
Confidence            334444444332222 55666666666665533 2 3555666666666666665 3333 45554 5666666666555


Q ss_pred             ccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858          177 GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY  248 (523)
Q Consensus       177 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  248 (523)
                      + ++ .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       104 ~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          104 D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             C-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             C-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            3 22 255555555555555555432  2445555555555555555432  33444444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=3.4e-18  Score=178.27  Aligned_cols=168  Identities=20%  Similarity=0.301  Sum_probs=134.1

Q ss_pred             CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      +++|+.|++++|.+....... +++|+.|+|++|.+.+..+  +..+++|+.|+|++|.++ .+| .+..+. +|++|+|
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~-~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLK-KLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCT-TCCEEEC
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCC-CCCEEEe
Confidence            478888888888887654322 8889999999998886554  788889999999999887 454 677776 7999999


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+.+.
T Consensus       117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             cCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            99988853  3577888899999999988754  578888999999999998887655  88888999999999988764


Q ss_pred             CCCccccccCCCCcEEeccCccCC
Q 009858          251 LRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                       +   ....+++|+.|+|++|.+.
T Consensus       191 -~---~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          191 -R---ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             -G---GGTTCTTCSEEECCSEEEE
T ss_pred             -h---HHccCCCCCEEEccCCcCc
Confidence             2   2366888999999998887

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=7.3e-18  Score=150.77  Aligned_cols=151  Identities=17%  Similarity=0.147  Sum_probs=97.4

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL  192 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (523)
                      +++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..+. +|++|++++|.+++..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            344455555555554 333 4666677777777777654 33 3566665 67777777777776666677777777777


Q ss_pred             ECcCCCCCCCCCccccCCCCCcEEECCCCc-CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCc
Q 009858          193 NFNGNELVGSVPRSLLNCANLQVLDLGNNK-MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNN  271 (523)
Q Consensus       193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  271 (523)
                      ++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.+.+..    ....+++|+.|++++|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCc
Confidence            777777776666677777777777777776 44 344 5677777777777777765432    2255677777777777


Q ss_pred             cCC
Q 009858          272 NFT  274 (523)
Q Consensus       272 ~l~  274 (523)
                      .+.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=2e-17  Score=151.51  Aligned_cols=157  Identities=20%  Similarity=0.189  Sum_probs=137.4

Q ss_pred             CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858          115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF  194 (523)
Q Consensus       115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  194 (523)
                      ..+.++.+++.++ .+|..+  .++|++|+|++|.+++..|..+..+. +|++|+|++|+++...+..|..+++|++|+|
T Consensus        20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            4567999999887 455544  38999999999999977788888887 8999999999999777778899999999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858          195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      ++|++++..+..|..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+  ..+++|+.|++++|.+.
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBC
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCcc
Confidence            999999777778899999999999999998 678889999999999999999987766555  67899999999999988


Q ss_pred             CCCc
Q 009858          275 GSLP  278 (523)
Q Consensus       275 ~~~p  278 (523)
                      +..+
T Consensus       173 c~c~  176 (229)
T 3e6j_A          173 CECR  176 (229)
T ss_dssp             TTBG
T ss_pred             CCcc
Confidence            6554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=9.5e-18  Score=150.00  Aligned_cols=152  Identities=16%  Similarity=0.224  Sum_probs=129.8

Q ss_pred             CCCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           91 PWKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      .+++|++|++++|.++...... +++|++|++++|.++  .+..+..+++|++|++++|.+++..|..+..+. +|++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT-TCCEEE
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC-CCCEEE
Confidence            4589999999999998544222 899999999999775  334788999999999999999977888899987 899999


Q ss_pred             ccCCcccccCCCCCCCCCCCCEEECcCCC-CCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858          170 LRKNRFHGTIPETFPKGNNLTTLNFNGNE-LVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFY  248 (523)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  248 (523)
                      +++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            99999998788889999999999999998 65 555 68999999999999999985 44 7889999999999999875


Q ss_pred             C
Q 009858          249 G  249 (523)
Q Consensus       249 ~  249 (523)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.4e-17  Score=155.87  Aligned_cols=166  Identities=25%  Similarity=0.339  Sum_probs=111.4

Q ss_pred             CCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858           93 KNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR  171 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~  171 (523)
                      .+++.++++++.+++..... +++|+.|++++|.++. ++ .+..+++|++|++++|+++ .+|. +..+. +|++|+++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~-~L~~L~L~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLT-KLEELSVN   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCS-SCCEEECC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCC-CCCEEECC
Confidence            45566666666666544222 6777777777777663 33 5677777777777777777 4444 66665 67777777


Q ss_pred             CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858          172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL  251 (523)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  251 (523)
                      +|++++. |. +.. ++|++|++++|.+++.  ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+.+. 
T Consensus        94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence            7777743 32 222 6777777777777642  3477777788888887777653 3 577777788888877777655 


Q ss_pred             CCccccccCCCCcEEeccCccCC
Q 009858          252 RDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                       ..+  ..+++|+.|++++|.+.
T Consensus       166 -~~l--~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 -GGL--TRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             -TTS--TTCCCCCEEEEEEEEEE
T ss_pred             -HHh--ccCCCCCEEeCCCCccc
Confidence             222  55777788888877776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=2e-18  Score=184.46  Aligned_cols=114  Identities=27%  Similarity=0.338  Sum_probs=52.6

Q ss_pred             chhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCC
Q 009858          131 PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC  210 (523)
Q Consensus       131 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  210 (523)
                      +..|..++.|+.|+|++|.+. .+|..++.+. +|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|.++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            444444555555555555554 4444444444 4555555555554 44444444555555555555544 344444445


Q ss_pred             CCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858          211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      ++|++|+|++|.+. .+|..|+.+++|+.|+|++|.+.+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence            55555555555443 334444444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=2.9e-20  Score=192.66  Aligned_cols=204  Identities=21%  Similarity=0.266  Sum_probs=127.0

Q ss_pred             hCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCc
Q 009858          135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQ  214 (523)
Q Consensus       135 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  214 (523)
                      ..+++|+.|+|++|.++ .+|..++.+. +|+.|++++|......|..           +..+...+..|..+..+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence            56788999999999997 8999999998 7999998766422122210           011122334555666666666


Q ss_pred             EEE-CCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccc
Q 009858          215 VLD-LGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE  293 (523)
Q Consensus       215 ~L~-L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~  293 (523)
                      .|+ ++.|.+.           .|..+.+.+|.+....        ...|+.|++++|.++ .+|.  +.          
T Consensus       413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~--------~~~L~~L~Ls~n~l~-~lp~--~~----------  460 (567)
T 1dce_A          413 AVDPMRAAYLD-----------DLRSKFLLENSVLKME--------YADVRVLHLAHKDLT-VLCH--LE----------  460 (567)
T ss_dssp             HHCGGGHHHHH-----------HHHHHHHHHHHHHHHH--------HTTCSEEECTTSCCS-SCCC--GG----------
T ss_pred             cCcchhhcccc-----------hhhhhhhhcccccccC--------ccCceEEEecCCCCC-CCcC--cc----------
Confidence            666 4444321           2222333333332111        123666666666665 2442  11          


Q ss_pred             ccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCcccc
Q 009858          294 AADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG  373 (523)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  373 (523)
                                                      .+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| .++
T Consensus       461 --------------------------------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~  505 (567)
T 1dce_A          461 --------------------------------QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA  505 (567)
T ss_dssp             --------------------------------GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT
T ss_pred             --------------------------------ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC
Confidence                                            1556677777777777 666677777777777777777774 55 577


Q ss_pred             CCCCCCEEeCCCCcCCCcC-ChhhcCCCCCCeEECCCCcCcccCCC
Q 009858          374 DLTDLESLDLSSNVLDGVI-PRELTRLTFLAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       374 ~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~  418 (523)
                      .+++|++|+|++|++++.. |..+..+++|+.|++++|++++..|.
T Consensus       506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            7777777777777777665 67777777777777777777765553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.9e-16  Score=140.78  Aligned_cols=130  Identities=21%  Similarity=0.257  Sum_probs=95.8

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCch-hhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPR-LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR  174 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~  174 (523)
                      ++++++++.++..+.....+|++|++++|.+++..+. .|..+++|++|+|++|++++..|..+..+. +|++|+|++|+
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECCCCc
Confidence            6788888888654444456788888888877765553 477777888888888887766677777776 67777777777


Q ss_pred             ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC
Q 009858          175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT  226 (523)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  226 (523)
                      +++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            7777776777777777777777777777777777777777777777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=4.2e-17  Score=145.03  Aligned_cols=114  Identities=23%  Similarity=0.332  Sum_probs=91.7

Q ss_pred             hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEE
Q 009858          327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN  406 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  406 (523)
                      +++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            67788889999999888888999999999999999999988888899999999999999999999999999999999999


Q ss_pred             CCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 009858          407 LSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFP  440 (523)
Q Consensus       407 Ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~  440 (523)
                      +++|++++..+.......+....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            9999999776532111112222344554555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.3e-16  Score=149.27  Aligned_cols=147  Identities=21%  Similarity=0.256  Sum_probs=127.1

Q ss_pred             CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      +++|++|++++|.++...... +++|+.|++++|.+++..+  +.++++|++|++++|+++ .+|....  . +|++|++
T Consensus        40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~~--~-~L~~L~L  113 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPS--A-CLSRLFL  113 (263)
T ss_dssp             HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCCC--S-SCCEEEC
T ss_pred             cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcccc--C-cccEEEc
Confidence            589999999999998654222 8999999999999996655  899999999999999998 5665433  4 8999999


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|.+++. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.
T Consensus       114 ~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          114 DNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99999964 3 588999999999999999854 4 688999999999999999876  6788999999999999998655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=2.4e-17  Score=176.21  Aligned_cols=191  Identities=23%  Similarity=0.225  Sum_probs=115.6

Q ss_pred             EEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCc
Q 009858          143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK  222 (523)
Q Consensus       143 L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  222 (523)
                      ++++.|.+. ..|..+..+. .|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQ-LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             -----------------CCC-CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred             cccccccee-cChhhhccCC-CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence            345556665 6677788887 8999999999998 66766778999999999999998 889999999999999999999


Q ss_pred             CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccc
Q 009858          223 MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKY  302 (523)
Q Consensus       223 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~  302 (523)
                      ++ .+|..|+.+++|++|+|++|.+. .+|..+  ..+++|+.|+|++|.+++.+|..+...                  
T Consensus       282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~~------------------  339 (727)
T 4b8c_D          282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKILTEK------------------  339 (727)
T ss_dssp             CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHHHHHH------------------
T ss_pred             CC-ccChhhcCCCCCCEEECCCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHHHhhc------------------
Confidence            98 67999999999999999999986 445544  778999999999999987666543211                  


Q ss_pred             cCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCC--------cccccCCccccC
Q 009858          303 MGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQN--------ILSGNIPSSLGD  374 (523)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~p~~~~~  374 (523)
                                              ...+..++|++|.+++.+|..      |+.|++++|        .+.+..+..+..
T Consensus       340 ------------------------~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~  389 (727)
T 4b8c_D          340 ------------------------SVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD  389 (727)
T ss_dssp             ------------------------HHHHHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred             ------------------------chhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence                                    112234677888888777653      555666665        333333344455


Q ss_pred             CCCCCEEeCCCCcCC
Q 009858          375 LTDLESLDLSSNVLD  389 (523)
Q Consensus       375 l~~L~~L~Ls~n~l~  389 (523)
                      +..+....+++|-+.
T Consensus       390 l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          390 LAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ------------CCC
T ss_pred             ccccceeeeeccccc
Confidence            556666667777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.1e-16  Score=155.18  Aligned_cols=260  Identities=13%  Similarity=0.171  Sum_probs=120.9

Q ss_pred             CCCccEEEccCCCCc--cCCCCCCCCCcEEEccCCcCCCcCchhhhC--------CCCcCEEEccCCcCCccChhhHhhc
Q 009858           92 WKNLEYLDLRSNLLQ--GPVPAPSSNMRVFLISNNKFIGEIPRLICN--------TSTIEILDLSNNSLSGTIPECIGNF  161 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~p~~l~~l  161 (523)
                      +++|++|||++|++.  ......++.++.+.+..|.   ..+.+|.+        +++|+.|+|.+ .++..-+.+|..+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence            366777777777766  2222223334444444442   22334555        66666666666 5552223334444


Q ss_pred             ccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCC----CCCCCCccccCCCCCc-EEECCCCcCCCCchHhhh----
Q 009858          162 SKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE----LVGSVPRSLLNCANLQ-VLDLGNNKMKDTFPHWLG----  232 (523)
Q Consensus       162 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~----  232 (523)
                      . +|++|++++|.+..+.+..|....++..+.+..+.    ........|.++..|+ .+.+....   .++..+.    
T Consensus       124 ~-~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~  199 (329)
T 3sb4_A          124 D-NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGL  199 (329)
T ss_dssp             T-TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTC
T ss_pred             c-ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhccc
Confidence            4 56666666666655555566665555555544321    1112233444555555 34333221   2222221    


Q ss_pred             cCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccce
Q 009858          233 TLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSV  312 (523)
Q Consensus       233 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  312 (523)
                      ...++..+.+.++-.......  ....+++|+.+++++|.++ .+|...|.+                            
T Consensus       200 ~~~~~~~l~~~~~l~~~~~~~--l~~~~~~L~~l~L~~n~i~-~I~~~aF~~----------------------------  248 (329)
T 3sb4_A          200 QPRDINFLTIEGKLDNADFKL--IRDYMPNLVSLDISKTNAT-TIPDFTFAQ----------------------------  248 (329)
T ss_dssp             CGGGCSEEEEEECCCHHHHHH--HHHHCTTCCEEECTTBCCC-EECTTTTTT----------------------------
T ss_pred             CccccceEEEeeeecHHHHHH--HHHhcCCCeEEECCCCCcc-eecHhhhhC----------------------------
Confidence            123344444433211000000  0012445555555555544 444433332                            


Q ss_pred             EEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCC-eeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCc
Q 009858          313 TLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLR-LLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGV  391 (523)
Q Consensus       313 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  391 (523)
                                    +.+|+.++|.+| ++...+..|.++.+|+ .+++.+ .++...+.+|.++++|+.|++++|.++.+
T Consensus       249 --------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          249 --------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             --------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             --------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence                          333444444444 4433344555555555 555555 44444445555555555555555555555


Q ss_pred             CChhhcCCCCCCeEE
Q 009858          392 IPRELTRLTFLAVLN  406 (523)
Q Consensus       392 ~~~~l~~l~~L~~L~  406 (523)
                      .+.+|.++++|+.++
T Consensus       313 ~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          313 GDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTTTTCTTCCCCEEE
T ss_pred             chhhhcCCcchhhhc
Confidence            555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=5.3e-19  Score=183.22  Aligned_cols=103  Identities=23%  Similarity=0.273  Sum_probs=90.1

Q ss_pred             cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEEC
Q 009858          328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNL  407 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  407 (523)
                      ..|+.|+|++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+++ +| .+..+++|+.|+|
T Consensus       441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            468999999999995 676 899999999999999999 789999999999999999999997 56 8999999999999


Q ss_pred             CCCcCcccC-CCC-CCCCcccCCccCCCCC
Q 009858          408 SRNKLEGRI-PEG-NQFATFSSDSYGGNLG  435 (523)
Q Consensus       408 s~N~l~~~~-p~~-~~~~~~~~~~~~gn~~  435 (523)
                      ++|.+++.. |.. ..+..+..+.+.+|+.
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            999999875 543 4566777777888863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.8e-15  Score=134.37  Aligned_cols=126  Identities=22%  Similarity=0.327  Sum_probs=61.8

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcc
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRF  175 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l  175 (523)
                      ++++++++.++..+....++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|..+. +|++|+|++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCCcc
Confidence            45666666665433333445555555555554 3344455555555555555555533333444444 455555555555


Q ss_pred             cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcC
Q 009858          176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKM  223 (523)
Q Consensus       176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  223 (523)
                      ++..|..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            544444455555555555555555433333444444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=2.7e-15  Score=131.57  Aligned_cols=133  Identities=18%  Similarity=0.164  Sum_probs=101.9

Q ss_pred             ccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCc
Q 009858           95 LEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR  174 (523)
Q Consensus        95 L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~  174 (523)
                      .+.+++++++++..+....++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+. +|++|++++|+
T Consensus         9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSC
T ss_pred             CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCC
Confidence            46788888888766655578888888888888877777778888888888888888844444456666 78888888888


Q ss_pred             ccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch
Q 009858          175 FHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP  228 (523)
Q Consensus       175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  228 (523)
                      +++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            887666677788888888888888876555556778888888888888776544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=134.38  Aligned_cols=126  Identities=25%  Similarity=0.338  Sum_probs=84.4

Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG  196 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (523)
                      +.+++++|.++ .+|..+  .++|++|++++|.++ .+|..+..+. +|++|++++|.+++..+..|.++++|++|+|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            46677777766 344433  246777777777776 6676676666 677777777777766666677777777777777


Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc
Q 009858          197 NELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF  247 (523)
Q Consensus       197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  247 (523)
                      |.+++..+..|.++++|++|+|++|.+....+..|..+++|+.|++++|++
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            777766666677777777777777777654444566666666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=2.5e-16  Score=136.92  Aligned_cols=105  Identities=19%  Similarity=0.233  Sum_probs=46.2

Q ss_pred             CCccEEEccCCCCc-cCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858           93 KNLEYLDLRSNLLQ-GPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL  168 (523)
Q Consensus        93 ~~L~~L~L~~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L  168 (523)
                      ++|++|++++|.++ +.+|..   +++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+. +|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEE
Confidence            45555555555554 223322   44445555555444433  3344444444455544444433444443343 44444


Q ss_pred             EccCCcccccCC-CCCCCCCCCCEEECcCCCCC
Q 009858          169 DLRKNRFHGTIP-ETFPKGNNLTTLNFNGNELV  200 (523)
Q Consensus       169 ~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~  200 (523)
                      ++++|.+++..+ ..+..+++|++|++++|.++
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            444444443211 23334444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=6.7e-16  Score=134.19  Aligned_cols=132  Identities=23%  Similarity=0.228  Sum_probs=81.3

Q ss_pred             CCcCEEEccCCcCC-ccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEE
Q 009858          138 STIEILDLSNNSLS-GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVL  216 (523)
Q Consensus       138 ~~L~~L~L~~n~l~-~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  216 (523)
                      ++|+.|++++|.++ +.+|..+..+. +|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            55666666666665 45565555555 566666666666644  556666666677776666665556555566677777


Q ss_pred             ECCCCcCCCCc-hHhhhcCCCCCeEEeccccccCcCC---CccccccCCCCcEEeccCccCC
Q 009858          217 DLGNNKMKDTF-PHWLGTLRELQVLILRSNKFYGHLR---DYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       217 ~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      ++++|.+.+.. +..+..+++|+.|++++|.+.+..+   ..+  ..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChh
Confidence            77777666432 2556666667777777666654433   122  45666777777666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=1.1e-15  Score=148.32  Aligned_cols=271  Identities=13%  Similarity=0.124  Sum_probs=173.5

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhC-CCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCC------
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICN-TSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPK------  185 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~------  185 (523)
                      +.+++.|.++++- .......+.. +++|++|||++|++. .....-+.+. .++.+.+..|.   +.+..|.+      
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~-~~~~~~~~~~~---I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYP-NGKFYIYMANF---VPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSG-GGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeE-EecCcccccc-ccccccccccc---cCHHHhcccccccc
Confidence            6678888887652 1111223444 678888888888876 1111111222 23445555552   33456667      


Q ss_pred             --CCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccc----cCcCCCcccccc
Q 009858          186 --GNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF----YGHLRDYEADYY  259 (523)
Q Consensus       186 --l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~~~  259 (523)
                        +++|+.|++.. .++.+.+.+|.++++|+.+++.+|.+....+.+|..+.++..+....+..    ......  ++..
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~--~f~~  174 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF--AFIE  174 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS--CEEE
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc--cccc
Confidence              88888888888 77766677888888888888888887766667777766666555444221    111111  1234


Q ss_pred             CCCCc-EEeccCccCCCCCchHHHhc---cccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccC
Q 009858          260 FSKLR-ILDLSNNNFTGSLPAMFFKN---MKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDL  335 (523)
Q Consensus       260 l~~L~-~L~l~~n~l~~~~p~~~~~~---l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  335 (523)
                      +..|+ .+.+...   +.++...+..   ...+..+...+.                  ............+++|+.++|
T Consensus       175 ~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~------------------l~~~~~~~l~~~~~~L~~l~L  233 (329)
T 3sb4_A          175 GEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK------------------LDNADFKLIRDYMPNLVSLDI  233 (329)
T ss_dssp             SCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC------------------CCHHHHHHHHHHCTTCCEEEC
T ss_pred             ccccceeEEecCC---CcHHHHHhhcccCccccceEEEeee------------------ecHHHHHHHHHhcCCCeEEEC
Confidence            45555 4444332   2344443332   112222211110                  000111122234789999999


Q ss_pred             CCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCC-EEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          336 SKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE-SLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       336 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      ++|.++...+..|.++.+|+.|+|.+| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.
T Consensus       234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            999999666778999999999999998 7777788999999999 999999 7887888999999999999999999984


Q ss_pred             c
Q 009858          415 R  415 (523)
Q Consensus       415 ~  415 (523)
                      .
T Consensus       312 I  312 (329)
T 3sb4_A          312 L  312 (329)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=3.2e-16  Score=133.24  Aligned_cols=105  Identities=19%  Similarity=0.233  Sum_probs=48.6

Q ss_pred             CCccEEEccCCCCc-cCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEE
Q 009858           93 KNLEYLDLRSNLLQ-GPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVL  168 (523)
Q Consensus        93 ~~L~~L~L~~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L  168 (523)
                      ++++.|++++|.++ +.+|..   +++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+. +|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCEE
Confidence            45555555555554 333322   44555555555555433  3444455555555555555433444444444 45555


Q ss_pred             EccCCccccc-CCCCCCCCCCCCEEECcCCCCC
Q 009858          169 DLRKNRFHGT-IPETFPKGNNLTTLNFNGNELV  200 (523)
Q Consensus       169 ~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~  200 (523)
                      ++++|.+++. .+..+..+++|++|++++|.++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            5555544432 1133444444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1e-15  Score=130.06  Aligned_cols=109  Identities=27%  Similarity=0.341  Sum_probs=52.2

Q ss_pred             CCcCEEEccCCcCC-ccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEE
Q 009858          138 STIEILDLSNNSLS-GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVL  216 (523)
Q Consensus       138 ~~L~~L~L~~n~l~-~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  216 (523)
                      ++|+.|++++|.++ +.+|..+..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34444555555444 34444444443 455555555544433  344455555555555555544444444445555555


Q ss_pred             ECCCCcCCCC-chHhhhcCCCCCeEEeccccccC
Q 009858          217 DLGNNKMKDT-FPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       217 ~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      ++++|.+.+. .+..+..+++|++|++++|.+.+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            5555555432 22444455555555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.1e-14  Score=127.72  Aligned_cols=133  Identities=21%  Similarity=0.240  Sum_probs=92.8

Q ss_pred             cCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858          140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG  219 (523)
Q Consensus       140 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  219 (523)
                      .+.+++++++++ .+|..+.   ++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            456677777776 5664432   367777777777776555566777777777777777775555566777777777777


Q ss_pred             CCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCc
Q 009858          220 NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLP  278 (523)
Q Consensus       220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  278 (523)
                      +|.+++..+..+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            777776666666777777777777777765555444  457788888888888776554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=1.4e-13  Score=136.28  Aligned_cols=242  Identities=11%  Similarity=0.143  Sum_probs=148.8

Q ss_pred             CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEEC
Q 009858          115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF  194 (523)
Q Consensus       115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  194 (523)
                      +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++..-+.+|..+. +|+.+++.+|.++.+....|. ..+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc-cCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            5667776655 554555666663 577777765 55523334555555 677777777777755555565 467777777


Q ss_pred             cCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858          195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      ..+ +......+|.++++|+.+++..+ +...-..+|.+ .+|+.+.+.. .+.......+  ..+++|+.+++.++.+.
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF--~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAF--YYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTT--TTCTTCCEEEEESSCCC
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHh--hCCCCCCEEEeCCcccc
Confidence            643 55555567777777777777664 33334445555 6777777743 2333333333  55677777777665543


Q ss_pred             ----CCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858          275 ----GSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK  350 (523)
Q Consensus       275 ----~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  350 (523)
                          ..++...|.+                                          +++|+.++|.+ .++......|.+
T Consensus       285 ~~~~~~I~~~aF~~------------------------------------------c~~L~~l~l~~-~i~~I~~~aF~~  321 (401)
T 4fdw_A          285 DDPEAMIHPYCLEG------------------------------------------CPKLARFEIPE-SIRILGQGLLGG  321 (401)
T ss_dssp             CCTTCEECTTTTTT------------------------------------------CTTCCEECCCT-TCCEECTTTTTT
T ss_pred             CCcccEECHHHhhC------------------------------------------CccCCeEEeCC-ceEEEhhhhhcC
Confidence                0233333332                                          45556666663 355444567777


Q ss_pred             cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCC-CCCeEECCCCcC
Q 009858          351 LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLT-FLAVLNLSRNKL  412 (523)
Q Consensus       351 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l  412 (523)
                      +.+|+.+.|..+ ++...+.+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.+
T Consensus       322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            788888888554 665666778887 888888888877766667777764 567777665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=2e-14  Score=125.83  Aligned_cols=136  Identities=22%  Similarity=0.281  Sum_probs=106.3

Q ss_pred             hhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCC
Q 009858          133 LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN  212 (523)
Q Consensus       133 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  212 (523)
                      .+.++.+|+.|++++|+++ .+|. +..+.++|++|++++|.+++.  ..|..+++|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4567788999999999988 5654 455544799999999999865  57888999999999999998655555688999


Q ss_pred             CcEEECCCCcCCCCchH--hhhcCCCCCeEEeccccccCcCCCc--cccccCCCCcEEeccCccCC
Q 009858          213 LQVLDLGNNKMKDTFPH--WLGTLRELQVLILRSNKFYGHLRDY--EADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       213 L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~l~~n~l~  274 (523)
                      |++|++++|.+. .+|.  .+..+++|+.|++++|.+... +..  .....+++|+.|++++|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999986 4565  788899999999999988643 332  01256889999999888654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=2.7e-14  Score=124.90  Aligned_cols=125  Identities=18%  Similarity=0.129  Sum_probs=66.9

Q ss_pred             CCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhh-HhhcccCCc
Q 009858           91 PWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPEC-IGNFSKSLR  166 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~~L~  166 (523)
                      .+.+|++|++++|.++.. +..   .++|+.|++++|.+++.  ..|..+++|++|++++|.++ .+|.. +..+. +|+
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~-~L~   91 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP-DLT   91 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT-TCC
T ss_pred             CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC-CCC
Confidence            346777777777777643 222   33666666666666543  34555666666666666665 33332 24454 566


Q ss_pred             EEEccCCcccccCCC--CCCCCCCCCEEECcCCCCCCCCCcc----ccCCCCCcEEECCCCc
Q 009858          167 VLDLRKNRFHGTIPE--TFPKGNNLTTLNFNGNELVGSVPRS----LLNCANLQVLDLGNNK  222 (523)
Q Consensus       167 ~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~  222 (523)
                      +|++++|.++ .+|.  .+..+++|++|++++|.+. ..|..    +..+++|+.|++++|.
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            6666666554 2332  4445555555555555554 22322    4444455555544444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=6.2e-13  Score=131.73  Aligned_cols=242  Identities=11%  Similarity=0.085  Sum_probs=170.3

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEE
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTL  192 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  192 (523)
                      ...++.+.+.+ .++.....+|.++ +|+.+.+..+ ++ .++...+.-. +|+.+.+.. .++.+.+..|.++.+|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            56667776654 3454556677775 7888888766 65 4444333334 688888876 5666677788888888888


Q ss_pred             ECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCcc
Q 009858          193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN  272 (523)
Q Consensus       193 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  272 (523)
                      ++.+|+++......|. ..+|+.+.+..+ +...-..+|.++++|+.+.+..+ +.......+  .. .+|+.+.+.+ .
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF--~~-~~L~~i~lp~-~  258 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF--RE-SGITTVKLPN-G  258 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--TT-CCCSEEEEET-T
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc--cc-CCccEEEeCC-C
Confidence            8888888766556666 578888888754 55555667888888888888764 333333333  22 5777777743 3


Q ss_pred             CCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccC-----cCcchh
Q 009858          273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFH-----GEIPEL  347 (523)
Q Consensus       273 l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~  347 (523)
                      ++ .++...|.+                                          +++|+.+++.+|.+.     ...+..
T Consensus       259 i~-~I~~~aF~~------------------------------------------c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          259 VT-NIASRAFYY------------------------------------------CPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             CC-EECTTTTTT------------------------------------------CTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             cc-EEChhHhhC------------------------------------------CCCCCEEEeCCccccCCcccEECHHH
Confidence            43 455444544                                          455555555555443     345678


Q ss_pred             hcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCc
Q 009858          348 MGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       348 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      |.++++|+.+.|.+ .++.....+|.++++|+.+.|..| ++.+...+|.++ +|+.+++++|.+.
T Consensus       296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            88999999999984 577677789999999999999665 776777889999 9999999999775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=5.1e-16  Score=138.80  Aligned_cols=137  Identities=23%  Similarity=0.341  Sum_probs=63.2

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      ..++.++++.+.+++..|..              . .+|..|..+++|++|++++|.++ .+| .+..+. +|++|++++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l--------------~-~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~-~L~~L~l~~   79 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPI--------------E-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGR   79 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTC--------------C-CCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHT-TCCEEEEEE
T ss_pred             ccccCcchheeEeccccCcH--------------h-hhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCC-CCCEEECCC
Confidence            45555566666665544431              0 12224444444555555544444 244 444443 455555555


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCc
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      |.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus        80 n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           80 NLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            4444 333333333445555555554442 22 34445555555555555543211 2445555555555555554433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=5.4e-16  Score=138.65  Aligned_cols=111  Identities=20%  Similarity=0.221  Sum_probs=51.1

Q ss_pred             hHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCC
Q 009858          157 CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRE  236 (523)
Q Consensus       157 ~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  236 (523)
                      .+..+. +|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+..+++
T Consensus        43 ~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            444444 45555555555543 33 4444455555555555544 344444444555555555555443 23 3444555


Q ss_pred             CCeEEeccccccCcCCCccccccCCCCcEEeccCccCC
Q 009858          237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT  274 (523)
Q Consensus       237 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  274 (523)
                      |+.|++++|.+.+..+ ......+++|++|++++|.+.
T Consensus       117 L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHH
T ss_pred             CCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccc
Confidence            5555555554432211 001133445555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2.6e-13  Score=117.74  Aligned_cols=105  Identities=25%  Similarity=0.307  Sum_probs=65.6

Q ss_pred             cCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858          140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG  219 (523)
Q Consensus       140 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  219 (523)
                      .+.+++++|.++ .+|..+.   ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            456666666666 5665442   256666666666666666666666666666666666665555556666666666666


Q ss_pred             CCcCCCCchHhhhcCCCCCeEEecccccc
Q 009858          220 NNKMKDTFPHWLGTLRELQVLILRSNKFY  248 (523)
Q Consensus       220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  248 (523)
                      +|.+.+..+..|..+++|+.|++++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            66666555555666666666666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=6e-13  Score=115.49  Aligned_cols=106  Identities=25%  Similarity=0.267  Sum_probs=63.7

Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG  196 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (523)
                      +.+++++|.++. +|..+  .++|++|+|++|++++..|..+..+. +|++|+|++|++++..+..|..+++|++|+|++
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            344444444442 33333  24566666666666644455555555 566666666666655555566677777777777


Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCcCCCC
Q 009858          197 NELVGSVPRSLLNCANLQVLDLGNNKMKDT  226 (523)
Q Consensus       197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  226 (523)
                      |++++..+..|..+++|++|+|++|.+...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            777655555667777777777777766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=5.2e-13  Score=116.28  Aligned_cols=104  Identities=25%  Similarity=0.313  Sum_probs=67.0

Q ss_pred             CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858          141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN  220 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  220 (523)
                      +.+++++|.++ .+|..+.   ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            56667777665 6665543   3677777777777766666677777777777777777654444556677777777777


Q ss_pred             CcCCCCchHhhhcCCCCCeEEecccccc
Q 009858          221 NKMKDTFPHWLGTLRELQVLILRSNKFY  248 (523)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~  248 (523)
                      |.+.+..+..|..+++|+.|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7766544444666666666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1.4e-12  Score=113.60  Aligned_cols=87  Identities=24%  Similarity=0.256  Sum_probs=50.8

Q ss_pred             CCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEE
Q 009858          138 STIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLD  217 (523)
Q Consensus       138 ~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  217 (523)
                      ++|++|+|++|++++..|..+..+. +|++|+|++|++++..+..|..+++|++|+|++|++.+..+..|..+++|++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            4555555555555544444555554 566666666666544444456666666666666666644444466666667777


Q ss_pred             CCCCcCCC
Q 009858          218 LGNNKMKD  225 (523)
Q Consensus       218 L~~n~l~~  225 (523)
                      +++|.+..
T Consensus       112 L~~N~~~c  119 (174)
T 2r9u_A          112 LYNNPWDC  119 (174)
T ss_dssp             CCSSCBCT
T ss_pred             eCCCCccc
Confidence            77666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=1.9e-13  Score=134.04  Aligned_cols=157  Identities=17%  Similarity=0.126  Sum_probs=89.2

Q ss_pred             CCccEEEccCCCCccCCCC--------CCCCCcEEEccCCcCCCcCchhh-hCCCCcCEEEccCCcCCccChhhHhhc--
Q 009858           93 KNLEYLDLRSNLLQGPVPA--------PSSNMRVFLISNNKFIGEIPRLI-CNTSTIEILDLSNNSLSGTIPECIGNF--  161 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~--------~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l--  161 (523)
                      ++|++|+|++|.++.....        ..++|+.|+|++|.++......+ ..+++|+.|+|++|.+++.....+...  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            5677778877777642221        13567777777777654333222 234567777777777764433443321  


Q ss_pred             --ccCCcEEEccCCccccc----CCCCCCCCCCCCEEECcCCCCCCC----CCccccCCCCCcEEECCCCcCCCC----c
Q 009858          162 --SKSLRVLDLRKNRFHGT----IPETFPKGNNLTTLNFNGNELVGS----VPRSLLNCANLQVLDLGNNKMKDT----F  227 (523)
Q Consensus       162 --~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~  227 (523)
                        .++|++|+|++|.++..    ++..+...++|++|+|++|.+++.    ++..+...++|++|+|++|.++..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence              12577777777766532    222334556677777777766532    233455566677777777766532    2


Q ss_pred             hHhhhcCCCCCeEEeccccccC
Q 009858          228 PHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       228 ~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      +..+...++|++|++++|.+.+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHhCCCCCEEeccCCCCCH
Confidence            3334455666666666666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=1.2e-13  Score=135.61  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=120.0

Q ss_pred             CCCCcEEEccCCcCCCcCchhhhC-----CCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCC----
Q 009858          113 SSNMRVFLISNNKFIGEIPRLICN-----TSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETF----  183 (523)
Q Consensus       113 ~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~----  183 (523)
                      .++|+.|++++|.++......+..     .++|++|+|++|.+++.....+....++|++|+|++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            678999999999987654444433     37999999999999755444554433389999999999975433333    


Q ss_pred             -CCCCCCCEEECcCCCCCCC----CCccccCCCCCcEEECCCCcCCCC----chHhhhcCCCCCeEEeccccccCcCCCc
Q 009858          184 -PKGNNLTTLNFNGNELVGS----VPRSLLNCANLQVLDLGNNKMKDT----FPHWLGTLRELQVLILRSNKFYGHLRDY  254 (523)
Q Consensus       184 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~  254 (523)
                       ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+...    ++..+...++|++|++++|.+.+.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2457899999999998742    344557789999999999998743    3566777889999999999886432222


Q ss_pred             c--ccccCCCCcEEeccCccCCC
Q 009858          255 E--ADYYFSKLRILDLSNNNFTG  275 (523)
Q Consensus       255 ~--~~~~l~~L~~L~l~~n~l~~  275 (523)
                      +  .....++|++|++++|.++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            1  11346889999999999873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.27  E-value=8e-11  Score=116.86  Aligned_cols=310  Identities=12%  Similarity=0.056  Sum_probs=173.7

Q ss_pred             ccCCCCCCCCCccEEEccCCCCccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhh
Q 009858           84 LLGNKKLPWKNLEYLDLRSNLLQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGN  160 (523)
Q Consensus        84 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  160 (523)
                      +-..+|..+.+|+.+.+..+ ++.+....   +.+|+.+++.++ ++.....+|.++.+|+.+.+..+ +...-..+|..
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            44567888899999999744 54433332   788999999765 55556677888888888776644 33122333333


Q ss_pred             cccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeE
Q 009858          161 FSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL  240 (523)
Q Consensus       161 l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  240 (523)
                      .  .+....+... ........|.++.+|+.+.+..+. .......|.++.+|+.+++..+ +......+|.++..|+.+
T Consensus       139 ~--~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          139 C--DFKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             C--CCSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             c--cccccccCcc-ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            3  2333333222 222444567777778888776543 3344566777777777777655 333334556666677766


Q ss_pred             EeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccc--cCccccccceEEEecc
Q 009858          241 ILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKY--MGETYYEDSVTLIIKR  318 (523)
Q Consensus       241 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~  318 (523)
                      .+..+...  .....  ....+|+.+.+.... + .+....+.++..++.+.+.........  ................
T Consensus       214 ~~~~~~~~--i~~~~--~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~  287 (394)
T 4fs7_A          214 EFPNSLYY--LGDFA--LSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI  287 (394)
T ss_dssp             CCCTTCCE--ECTTT--TTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE
T ss_pred             ecCCCceE--eehhh--cccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcceeeccccccccccceeccCcee
Confidence            66544321  11111  223455555554321 1 333344455555554443322111000  0000000000000011


Q ss_pred             hhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcC
Q 009858          319 QEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTR  398 (523)
Q Consensus       319 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  398 (523)
                      .....+..+.+|+.+.+..+ ++......|.++.+|+.++|..+ ++.....+|.++++|+.+.+..+ ++.....+|.+
T Consensus       288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            11223445677777777654 44344566778888888888654 66556678888888888888776 66566678888


Q ss_pred             CCCCCeEECCCC
Q 009858          399 LTFLAVLNLSRN  410 (523)
Q Consensus       399 l~~L~~L~Ls~N  410 (523)
                      +++|+.+++..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            888888887543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=3.3e-11  Score=117.53  Aligned_cols=88  Identities=23%  Similarity=0.177  Sum_probs=53.8

Q ss_pred             hhcccccccCCC-CccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCe
Q 009858          326 ILTIFTTIDLSK-NSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAV  404 (523)
Q Consensus       326 ~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  404 (523)
                      .+++|+.|+|++ |.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..++ |+.
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~  107 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE  107 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE
Confidence            345566666664 666655555666666666666666666665565666666666666666666655555555444 666


Q ss_pred             EECCCCcCcc
Q 009858          405 LNLSRNKLEG  414 (523)
Q Consensus       405 L~Ls~N~l~~  414 (523)
                      |+|.+|++.+
T Consensus       108 l~l~~N~~~c  117 (347)
T 2ifg_A          108 LVLSGNPLHC  117 (347)
T ss_dssp             EECCSSCCCC
T ss_pred             EEeeCCCccC
Confidence            6666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=4.2e-11  Score=116.80  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=56.0

Q ss_pred             EEccCC-cCCCcCchhhhCCCCcCEEEccC-CcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858          119 FLISNN-KFIGEIPRLICNTSTIEILDLSN-NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG  196 (523)
Q Consensus       119 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (523)
                      ++++++ +++ .+|. |..+++|++|+|++ |.+++..+..|..+. +|++|+|++|++++..|..|.++++|++|+|++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            455555 554 3444 55556666666664 566543334455554 566666666666655555555666666666666


Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCcCC
Q 009858          197 NELVGSVPRSLLNCANLQVLDLGNNKMK  224 (523)
Q Consensus       197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~  224 (523)
                      |++++..+..+..++ |+.|+|.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            666544444444443 666666655554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.12  E-value=3.9e-10  Score=111.87  Aligned_cols=288  Identities=13%  Similarity=0.079  Sum_probs=150.7

Q ss_pred             CCcccCCCCCCCCCccEEEccCCCCccCCCC---CCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhh
Q 009858           81 GPKLLGNKKLPWKNLEYLDLRSNLLQGPVPA---PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPEC  157 (523)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  157 (523)
                      +..+-..+|..+++|+.+++..+ ++.....   .+.+|+.+.+..+ +......+|.++..+..........  .-..+
T Consensus        82 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~--i~~~a  157 (394)
T 4fs7_A           82 VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTV--IGDEA  157 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCE--ECTTT
T ss_pred             ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccc--cchhh
Confidence            44555678889999999999755 3322222   2566666555433 2223334444443332222221111  11233


Q ss_pred             HhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCC-------------
Q 009858          158 IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMK-------------  224 (523)
Q Consensus       158 l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------------  224 (523)
                      |..+. +|+.+.+..+. ..+....|.++.+|+.+.+..+ +......+|.++..|+.+.+..+...             
T Consensus       158 F~~c~-~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~  234 (394)
T 4fs7_A          158 FATCE-SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN  234 (394)
T ss_dssp             TTTCT-TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred             hcccC-CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence            44443 56666655432 2244445555555555555443 33233344555555555544433211             


Q ss_pred             --------CCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccc
Q 009858          225 --------DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD  296 (523)
Q Consensus       225 --------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~  296 (523)
                              ......+..+..|+.+.+..+... .....+  .....++.+....+    .++...|..+..|+.+.+...
T Consensus       235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F--~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          235 IIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLF--YNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             EEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTT--TTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT
T ss_pred             EEECCCceecccccccccccceeEEcCCCcce-eecccc--ccccccceeccCce----eeccccccccccccccccccc
Confidence                    111123334444444444333211 111111  23334444443332    123334444444444443211


Q ss_pred             cccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCC
Q 009858          297 ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT  376 (523)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  376 (523)
                                         +.......|..+.+|+.++|..+ ++..-..+|.++.+|+.+.+..+ ++.....+|.+++
T Consensus       308 -------------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          308 -------------------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             -------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             -------------------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence                               11122234556788999999754 66455678999999999999877 7767778999999


Q ss_pred             CCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858          377 DLESLDLSSNVLDGVIPRELTRLTFLAVL  405 (523)
Q Consensus       377 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  405 (523)
                      +|+.+++..+ +. .+..+|.++++|+.+
T Consensus       367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          367 NLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            9999999765 33 334678888888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.95  E-value=4.9e-08  Score=96.71  Aligned_cols=296  Identities=9%  Similarity=0.097  Sum_probs=162.6

Q ss_pred             CCCCCCCC-CccEEEccCCCCccCCCC---CCCCCcEEEccCCc---CCCcCchhhhCCCCcCEEEccCCcCCccChhhH
Q 009858           86 GNKKLPWK-NLEYLDLRSNLLQGPVPA---PSSNMRVFLISNNK---FIGEIPRLICNTSTIEILDLSNNSLSGTIPECI  158 (523)
Q Consensus        86 ~~~~~~~~-~L~~L~L~~n~l~~~~~~---~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  158 (523)
                      ..+|..++ .|+.+.+..+ ++.+-..   .+.+|+.+.+..|.   ++.....+|.++.+|+.+.+..+ ++..-...+
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            44565554 4777777543 3332222   26677777776553   44444566777777776666543 331223334


Q ss_pred             hhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCC
Q 009858          159 GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ  238 (523)
Q Consensus       159 ~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  238 (523)
                      ..+. +|+.+.+..+ +..+....|.....|+.+.+..+ +...-..+|.+ .+|+.+.+..+-.. ....++..+.++.
T Consensus       134 ~~c~-~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~  208 (394)
T 4gt6_A          134 HHCE-ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALS  208 (394)
T ss_dssp             TTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred             hhhc-ccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccc
Confidence            4444 6777777644 33355556777777777777654 33333444543 45777766544321 3334555666666


Q ss_pred             eEEeccccccCcCCCcccc-----------ccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccc
Q 009858          239 VLILRSNKFYGHLRDYEAD-----------YYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETY  307 (523)
Q Consensus       239 ~L~l~~n~l~~~~~~~~~~-----------~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  307 (523)
                      ................+..           .....+..+.+... ++ .+....|.++..|+.+.+.....         
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~---------  277 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVV---------  277 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCC---------
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccc---------
Confidence            6655443322111100000           00112222222211 11 23334455555555554432110         


Q ss_pred             cccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCc
Q 009858          308 YEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNV  387 (523)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  387 (523)
                                ......+..++.|+.+.+. +.++......|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.|..+ 
T Consensus       278 ----------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-  344 (394)
T 4gt6_A          278 ----------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-  344 (394)
T ss_dssp             ----------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-
T ss_pred             ----------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-
Confidence                      0111223346677777775 3455344567888888999988754 55566678888899999988755 


Q ss_pred             CCCcCChhhcCCCCCCeEECCCCcC
Q 009858          388 LDGVIPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       388 l~~~~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      ++.+-..+|.++++|+.+++.++..
T Consensus       345 v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          345 VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             cCEEhHhHhhCCCCCCEEEECCcee
Confidence            6656667888899999998887754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.93  E-value=8.9e-10  Score=107.04  Aligned_cols=59  Identities=19%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             cccCCeeeCcCCccccc----CCccccCCCCCCEEeCCCCcCCCcCChhhcC-CCCCCeEECCCCc
Q 009858          351 LHSLRLLNLSQNILSGN----IPSSLGDLTDLESLDLSSNVLDGVIPRELTR-LTFLAVLNLSRNK  411 (523)
Q Consensus       351 l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~N~  411 (523)
                      +++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.+++.....+.. +  ...++++++.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            44555555555555442    2222334566666666666665443333332 2  3456666655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=3.5e-10  Score=109.89  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=18.0

Q ss_pred             CCcCEEEccCCcCCc-c-------ChhhHhhcccCCcEEEccCC
Q 009858          138 STIEILDLSNNSLSG-T-------IPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus       138 ~~L~~L~L~~n~l~~-~-------~p~~l~~l~~~L~~L~L~~n  173 (523)
                      ..++.|.+......+ .       +..++..++ +|+.|.+...
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~-~L~~L~l~~~  149 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFA-HFEGLFWGDI  149 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHT-TCSEEEECCC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcc-hhhheeecCc
Confidence            345666666554331 1       123344454 6777776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.84  E-value=5.5e-08  Score=96.34  Aligned_cols=296  Identities=11%  Similarity=0.106  Sum_probs=177.9

Q ss_pred             CCcccCCCCCCCCCccEEEccCCC---CccCCCCC---CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccC
Q 009858           81 GPKLLGNKKLPWKNLEYLDLRSNL---LQGPVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTI  154 (523)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  154 (523)
                      +..+-..+|..+.+|+.+.+..+.   ++......   +.+|+.+.+..+ ++.....+|..+.+|+.+.+..+- ...-
T Consensus        75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~  152 (394)
T 4gt6_A           75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVA  152 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEEC
T ss_pred             eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeec
Confidence            444556789999999999998764   43332222   677887776654 444566788899999999997543 3133


Q ss_pred             hhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhh---
Q 009858          155 PECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWL---  231 (523)
Q Consensus       155 p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---  231 (523)
                      ...+.... .|+.+.+..+ ++.+....|.. ..|+.+.+..+-. .....+|.++.++.......+.... ....+   
T Consensus       153 ~~~F~~c~-~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~  227 (394)
T 4gt6_A          153 DGMFSYCY-SLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA-IDNVLYEK  227 (394)
T ss_dssp             TTTTTTCT-TCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEE
T ss_pred             ccceeccc-ccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceeccccccccc-ccceeecc
Confidence            34444555 7999999765 44455556654 5788888876533 3555677788888877765543321 11110   


Q ss_pred             -----------hcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccc
Q 009858          232 -----------GTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS  300 (523)
Q Consensus       232 -----------~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~  300 (523)
                                 .....+..+.+... +.......+  ..+..|+.+.+.++..  .++...|.++..|+.+.+....   
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF--~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~~i---  299 (394)
T 4gt6_A          228 SANGDYALIRYPSQREDPAFKIPNG-VARIETHAF--DSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSSRI---  299 (394)
T ss_dssp             CTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTT--TTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCTTC---
T ss_pred             cccccccccccccccccceEEcCCc-ceEccccee--eecccccEEecccccc--eecCcccccccccccccCCCcc---
Confidence                       01112223322211 111111222  4566777777765432  4555667777777766553210   


Q ss_pred             cccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCE
Q 009858          301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLES  380 (523)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  380 (523)
                                      .......|..+.+|+.++|..+ ++.....+|.++.+|+.+.|..+ ++.....+|.++++|+.
T Consensus       300 ----------------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          300 ----------------TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN  361 (394)
T ss_dssp             ----------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred             ----------------cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence                            1111223445778888888754 55445678999999999999755 66566689999999999


Q ss_pred             EeCCCCcCCCcCChhhcCCCCCCeEECCCCcC
Q 009858          381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       381 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      +++.++....   ..+.....|+.+.+..|.+
T Consensus       362 i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          362 IEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            9999986542   4677788899888876654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.67  E-value=1.3e-06  Score=85.85  Aligned_cols=82  Identities=13%  Similarity=0.155  Sum_probs=59.1

Q ss_pred             hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEE
Q 009858          327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN  406 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  406 (523)
                      +..|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.+-..+|.++.+|+.+.
T Consensus       262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            455555655433 44344456788888999988888887666778888889999998765 6656667888888888887


Q ss_pred             CCCC
Q 009858          407 LSRN  410 (523)
Q Consensus       407 Ls~N  410 (523)
                      +..+
T Consensus       340 ip~~  343 (379)
T 4h09_A          340 YPKS  343 (379)
T ss_dssp             CCTT
T ss_pred             ECCc
Confidence            7543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=4e-08  Score=86.05  Aligned_cols=19  Identities=21%  Similarity=0.370  Sum_probs=10.4

Q ss_pred             hhhCCCCcCEEEccCC-cCC
Q 009858          133 LICNTSTIEILDLSNN-SLS  151 (523)
Q Consensus       133 ~~~~l~~L~~L~L~~n-~l~  151 (523)
                      .+...+.|++|+|++| .+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~   50 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIP   50 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCC
T ss_pred             HHhcCCCCCEEEecCCCCCC
Confidence            3444555666666655 554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=6.4e-08  Score=84.73  Aligned_cols=92  Identities=12%  Similarity=0.214  Sum_probs=47.1

Q ss_pred             chhhhCCCCcCEEEccCCcCCccC----hhhHhhcccCCcEEEccCCccccc----CCCCCCCCCCCCEEEC--cCCCCC
Q 009858          131 PRLICNTSTIEILDLSNNSLSGTI----PECIGNFSKSLRVLDLRKNRFHGT----IPETFPKGNNLTTLNF--NGNELV  200 (523)
Q Consensus       131 ~~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--~~n~l~  200 (523)
                      ...+...++|++|+|++|.+...-    ...+.... +|++|+|++|.+.+.    +...+...++|++|+|  ++|.+.
T Consensus        58 ~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           58 AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            345566778888888888876432    22333333 567777766666532    2223333445555555  445554


Q ss_pred             CC----CCccccCCCCCcEEECCCCcC
Q 009858          201 GS----VPRSLLNCANLQVLDLGNNKM  223 (523)
Q Consensus       201 ~~----~~~~l~~l~~L~~L~L~~n~l  223 (523)
                      ..    +...+...++|++|++++|.+
T Consensus       137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          137 NNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            22    112223334455555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=2e-07  Score=85.72  Aligned_cols=88  Identities=28%  Similarity=0.306  Sum_probs=59.9

Q ss_pred             ccccc--ccCCCCccCcCcc----hhhcCcccCCeeeCcCCcccc--cCCccccCCCCCCEEeCCCCcCCCcCChhhcCC
Q 009858          328 TIFTT--IDLSKNSFHGEIP----ELMGKLHSLRLLNLSQNILSG--NIPSSLGDLTDLESLDLSSNVLDGVIPRELTRL  399 (523)
Q Consensus       328 ~~L~~--L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  399 (523)
                      +.|..  ++++.|... .++    .....+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+
T Consensus       141 p~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l  217 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI  217 (267)
T ss_dssp             HHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred             cchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence            44444  566666433 222    222457788888888888886  4456667788888888888888865  333434


Q ss_pred             C--CCCeEECCCCcCcccCCC
Q 009858          400 T--FLAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       400 ~--~L~~L~Ls~N~l~~~~p~  418 (523)
                      .  .|++|+|++|++.+.+|.
T Consensus       218 ~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TTSCCSEEECTTSTTGGGCSS
T ss_pred             ccCCcceEEccCCcCccccCc
Confidence            4  788888888888876663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=4.6e-07  Score=83.36  Aligned_cols=80  Identities=26%  Similarity=0.349  Sum_probs=65.7

Q ss_pred             HhhcccccccCCCCccCc--CcchhhcCcccCCeeeCcCCcccccCCccccCCC--CCCEEeCCCCcCCCcCC-------
Q 009858          325 KILTIFTTIDLSKNSFHG--EIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLT--DLESLDLSSNVLDGVIP-------  393 (523)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~~-------  393 (523)
                      ..+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++.+.  ..+..+.  +|++|+|++|.+.+..|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457899999999999997  4457778899999999999999964  2344444  99999999999987665       


Q ss_pred             hhhcCCCCCCeEE
Q 009858          394 RELTRLTFLAVLN  406 (523)
Q Consensus       394 ~~l~~l~~L~~L~  406 (523)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2467889999887

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.28  E-value=3.6e-05  Score=75.45  Aligned_cols=287  Identities=11%  Similarity=0.056  Sum_probs=181.4

Q ss_pred             CCcccCCCCCCCCCccEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhH
Q 009858           81 GPKLLGNKKLPWKNLEYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECI  158 (523)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  158 (523)
                      +..+-..+|..+.+|+.+++..+ ++.+....  -.+|+.+.+..+ ++.....+|... +|+.+.+..+ ++ .+....
T Consensus        57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~-~i~~~~  131 (379)
T 4h09_A           57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TT-EIGNYI  131 (379)
T ss_dssp             EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTT
T ss_pred             ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceeccC-CcccccCCCc-cc-cccccc
Confidence            34455678999999999999754 44333333  236777777644 444455567654 8999999765 33 344443


Q ss_pred             hhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCC------------CCCccccCCCCCcEEECCCCcCCCC
Q 009858          159 GNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVG------------SVPRSLLNCANLQVLDLGNNKMKDT  226 (523)
Q Consensus       159 ~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~~L~~L~L~~n~l~~~  226 (523)
                      +... +|+...+..+ ++.+....|....+++.+.+..+....            .....+.....+..+.+..... ..
T Consensus       132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i  208 (379)
T 4h09_A          132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TV  208 (379)
T ss_dssp             TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EE
T ss_pred             cccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EE
Confidence            4444 5777777654 444566678888888888776543321            1122344455566665554332 23


Q ss_pred             chHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCcc
Q 009858          227 FPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGET  306 (523)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~  306 (523)
                      ....+....+|+.+.+..+ +.......+  ..+..|+.+.+..+ ++ .++...|.++..++.+.+....         
T Consensus       209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f--~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~i---------  274 (379)
T 4h09_A          209 TAYGFSYGKNLKKITITSG-VTTLGDGAF--YGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAKV---------  274 (379)
T ss_dssp             CTTTTTTCSSCSEEECCTT-CCEECTTTT--TTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCCC---------
T ss_pred             eecccccccccceeeeccc-eeEEccccc--cCCccceEEEcCCC-cc-EeCccccceeehhccccccccc---------
Confidence            3445666777777777554 222222222  55677888877655 33 5566667777777666543211         


Q ss_pred             ccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCC
Q 009858          307 YYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSN  386 (523)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  386 (523)
                                .......+..+.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+
T Consensus       275 ----------~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          275 ----------KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             ----------SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ----------eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence                      1111233455788999999988888566788999999999999755 66566779999999999999765


Q ss_pred             cCCCcCChhhcCCCC
Q 009858          387 VLDGVIPRELTRLTF  401 (523)
Q Consensus       387 ~l~~~~~~~l~~l~~  401 (523)
                       ++.+-..+|.+++.
T Consensus       344 -v~~I~~~aF~~c~~  357 (379)
T 4h09_A          344 -ITLIESGAFEGSSI  357 (379)
T ss_dssp             -CCEECTTTTTTSSC
T ss_pred             -cCEEchhHhhCCCC
Confidence             66555667776643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.09  E-value=3.5e-07  Score=78.02  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=68.6

Q ss_pred             cccccccCCCCccCcCcchhhcCcccCCeeeCcCCc-ccccCCccccCC----CCCCEEeCCCCc-CCCcCChhhcCCCC
Q 009858          328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI-LSGNIPSSLGDL----TDLESLDLSSNV-LDGVIPRELTRLTF  401 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~  401 (523)
                      ..|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+    ++|++|+|++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468999999999887666677899999999999995 776544455554    479999999985 77655566788999


Q ss_pred             CCeEECCCCc
Q 009858          402 LAVLNLSRNK  411 (523)
Q Consensus       402 L~~L~Ls~N~  411 (523)
                      |++|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=1.3e-06  Score=74.52  Aligned_cols=83  Identities=10%  Similarity=0.035  Sum_probs=46.7

Q ss_pred             CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCc-CCccChhhHhhc---ccCCcEEEccCCc-ccccCCCCCCCCCCC
Q 009858          115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS-LSGTIPECIGNF---SKSLRVLDLRKNR-FHGTIPETFPKGNNL  189 (523)
Q Consensus       115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l---~~~L~~L~L~~n~-l~~~~p~~~~~l~~L  189 (523)
                      .|+.||++++.++..--..+.++++|+.|+|++|. +++.--..+..+   .++|++|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34455555555444444456778888888888874 664444444442   1257777777763 554322234445556


Q ss_pred             CEEECcCC
Q 009858          190 TTLNFNGN  197 (523)
Q Consensus       190 ~~L~L~~n  197 (523)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            66666555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.22  E-value=0.00074  Score=54.67  Aligned_cols=57  Identities=25%  Similarity=0.337  Sum_probs=41.5

Q ss_pred             eeeCcCCccc-ccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcc
Q 009858          356 LLNLSQNILS-GNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       356 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      .++-+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5666666665 24554332  468888888888887777778888888888888888864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.22  E-value=0.00016  Score=62.85  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=35.8

Q ss_pred             hCCCCcCEEEccCC-cCCcc----ChhhHhhcccCCcEEEccCCcccccCCCCCC----CCCCCCEEECcCCCCCCC---
Q 009858          135 CNTSTIEILDLSNN-SLSGT----IPECIGNFSKSLRVLDLRKNRFHGTIPETFP----KGNNLTTLNFNGNELVGS---  202 (523)
Q Consensus       135 ~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~L~~n~l~~~---  202 (523)
                      .+-+.|+.|+|++| .|...    +-+.+..-. .|++|+|++|.+.+.....++    .-+.|++|+|+.|.|...   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            33455555555553 44321    122222222 455555555555433222221    123455555555554421   


Q ss_pred             -CCccccCCCCCcEEECCCC
Q 009858          203 -VPRSLLNCANLQVLDLGNN  221 (523)
Q Consensus       203 -~~~~l~~l~~L~~L~L~~n  221 (523)
                       +...+..-+.|++|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             1122333344555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.21  E-value=0.00017  Score=62.65  Aligned_cols=87  Identities=17%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             hcccccccCCCCccCcC----cchhhcCcccCCeeeCcCCccccc----CCccccCCCCCCEEeCCCCc---CCCc----
Q 009858          327 LTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGN----IPSSLGDLTDLESLDLSSNV---LDGV----  391 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~----  391 (523)
                      -+.|+.|+|++|.+.+.    +.+.+..-+.|++|+|++|.|.+.    +-.++..-+.|++|+|++|.   +...    
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            46788899999988743    334445567899999999988753    22345555779999998763   3321    


Q ss_pred             CChhhcCCCCCCeEECCCCcCc
Q 009858          392 IPRELTRLTFLAVLNLSRNKLE  413 (523)
Q Consensus       392 ~~~~l~~l~~L~~L~Ls~N~l~  413 (523)
                      +...+..-+.|+.|+++.|...
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhCCCcCeEeccCCCcc
Confidence            3345666788999999877653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.97  E-value=0.0017  Score=52.44  Aligned_cols=56  Identities=14%  Similarity=0.156  Sum_probs=45.1

Q ss_pred             cEEEccCCCCc--cCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCC
Q 009858           96 EYLDLRSNLLQ--GPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS  151 (523)
Q Consensus        96 ~~L~L~~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  151 (523)
                      ..++.+++.++  ..+....++|+.|+|++|.++...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888887  444344668999999999998777788888999999999998875

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=91.47  E-value=0.026  Score=34.96  Aligned_cols=18  Identities=11%  Similarity=0.213  Sum_probs=7.7

Q ss_pred             EeeeehhhhhHHHHHHHH
Q 009858          472 VLMGYVCGTVFGMILGYI  489 (523)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~  489 (523)
                      ++.|++.|+++.++++++
T Consensus        13 IA~gVVgGv~~~~ii~~~   30 (44)
T 2ks1_B           13 IATGMVGALLLLLVVALG   30 (44)
T ss_dssp             STHHHHHHHHHHHHHHHH
T ss_pred             EEeehhHHHHHHHHHHHH
Confidence            344555444443333333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=86.25  E-value=0.064  Score=33.15  Aligned_cols=16  Identities=25%  Similarity=0.497  Sum_probs=6.8

Q ss_pred             EeeeehhhhhHHHHHH
Q 009858          472 VLMGYVCGTVFGMILG  487 (523)
Q Consensus       472 ~~~~~~~~~~~~~~~~  487 (523)
                      ++.|++.|+++.++++
T Consensus        12 IA~gVVgGv~~v~ii~   27 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVG   27 (44)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             EEEeehHHHHHHHHHH
Confidence            3444444444433333

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=80.10  E-value=0.12  Score=53.05  Aligned_cols=37  Identities=8%  Similarity=0.107  Sum_probs=29.9

Q ss_pred             ccccccchhhHhhhhhhhhcccchhhHHHHhhhhhHHHH
Q 009858            3 KRVMESISECLIQCTREQKNIVTCTAVKAAMSSISSFVY   41 (523)
Q Consensus         3 ~~~~eLi~r~~~q~~~~~~~~~~~~~~hdl~~~l~~~~~   41 (523)
                      ++|++|+.|||+|....+ ....|+ |||+|+++|..++
T Consensus       432 ~~l~~L~~rsLl~~~~~~-~~~~~~-mHdlv~~~a~~~~  468 (549)
T 2a5y_B          432 DRLKRLSKRGALLSGKRM-PVLTFK-IDHIIHMFLKHVV  468 (549)
T ss_dssp             HHHHHTTTBSSCSEEECS-SSCEEE-CCHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCeeEecCC-CceEEE-eChHHHHHHHHHH
Confidence            479999999999986543 345677 9999999998766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	523
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-14
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-10
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-09
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-08
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.4 bits (220), Expect = 3e-20
 Identities = 54/261 (20%), Positives = 91/261 (34%), Gaps = 11/261 (4%)

Query: 135 CNTST----IEILDLSNNSLSG--TIPECIGNFSKSLRVLDLRKN-RFHGTIPETFPKGN 187
           C+T T    +  LDLS  +L     IP  + N    L  L +       G IP    K  
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
            L  L      + G++P  L     L  LD   N +  T P  + +L  L  +    N+ 
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 248 YGHLRDYEADYYFSKLRILDLSNN--NFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGE 305
            G + D    +      +    N          A        ++      D +      +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 306 TYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILS 365
              +  +       ++  + +      +DL  N  +G +P+ + +L  L  LN+S N L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 366 GNIPSSLGDLTDLESLDLSSN 386
           G IP   G+L   +    ++N
Sbjct: 282 GEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 114 SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN 173
            N+    + NN+  G +P+ +     +  L++S N+L G IP+  GN  +   V     N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL-QRFDVSAYANN 301

Query: 174 RFHGTIP 180
           +     P
Sbjct: 302 KCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 157 CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVL 216
                SK+L  LDLR NR +GT+P+   +   L +LN + N L G +P    N     V 
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296

Query: 217 DLGNNKM 223
              NNK 
Sbjct: 297 AYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 40/179 (22%), Positives = 60/179 (33%), Gaps = 25/179 (13%)

Query: 122 SNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE 181
           S N   G +P  I +   +  +    N +SG IP+  G+FSK    + + +NR  G IP 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 182 TFPKGNNLTTL----------------------NFNGNELVGSVPRSLLNCANLQVLDLG 219
           TF   N                                  +      +    NL  LDL 
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 220 NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLP 278
           NN++  T P  L  L+ L  L +  N   G +          +  +   +NN      P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN---LQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.4 bits (215), Expect = 3e-19
 Identities = 71/331 (21%), Positives = 121/331 (36%), Gaps = 26/331 (7%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
            NL  ++  +N L    P  +    V ++ NN  I +I  L   T+   +   +N     
Sbjct: 66  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125

Query: 153 TIPEC-------------IGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL 199
              +              I + S    +  L++  F   + +  P  N  T    + +  
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 200 VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYY 259
             S    L    NL+ L   NN++ D  P  + T   L  L L  N+    L+D      
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQ----LKDIGTLAS 239

Query: 260 FSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQ 319
            + L  LDL+NN  +   P      +  +  +G     N S   G T   +      + +
Sbjct: 240 LTNLTDLDLANNQISNLAPLSGLTKLTEL-KLGANQISNISPLAGLTALTNLELNENQLE 298

Query: 320 EVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLE 379
           ++  +  L   T + L  N+     P  +  L  L+ L  + N +S    SSL +LT++ 
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNIN 354

Query: 380 SLDLSSNVLDGVIPRELTRLTFLAVLNLSRN 410
            L    N +  + P  L  LT +  L L+  
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 6e-15
 Identities = 39/174 (22%), Positives = 59/174 (33%), Gaps = 28/174 (16%)

Query: 92  WKNLEYLDLRSNLLQGPVPAPS-SNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSL 150
             NL+ L L  N L+      S +N+    ++NN+     P  +   + +  L L  N +
Sbjct: 218 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 275

Query: 151 SGTIP-------------------ECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTT 191
           S   P                       +  K+L  L L  N      P        L  
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 333

Query: 192 LNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSN 245
           L F  N++      SL N  N+  L  G+N++ D  P  L  L  +  L L   
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 6e-07
 Identities = 51/300 (17%), Positives = 99/300 (33%), Gaps = 45/300 (15%)

Query: 121 ISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIP 180
           +        +     +   +  L      +     + +     +L  ++   N+     P
Sbjct: 29  LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYL-NNLTQINFSNNQLTDITP 83

Query: 181 ETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVL 240
                                     L N   L  + + NN++ D  P    T       
Sbjct: 84  --------------------------LKNLTKLVDILMNNNQIADITPLANLTNLTGL-- 115

Query: 241 ILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS 300
                 F   + D +     + L  L+LS+N  +         +++ ++   +  D    
Sbjct: 116 ----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 171

Query: 301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLS 360
             +  T  E       K  ++ ++  LT   ++  + N      P  +G L +L  L+L+
Sbjct: 172 ANL--TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 227

Query: 361 QNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
            N L      +L  LT+L  LDL++N +  + P  L+ LT L  L L  N++    P   
Sbjct: 228 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 57/316 (18%), Positives = 100/316 (31%), Gaps = 69/316 (21%)

Query: 134 ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN 193
           +   + +  ++ SNN L+   P  + N +K L  + +  N+     P          TL 
Sbjct: 62  VEYLNNLTQINFSNNQLTDITP--LKNLTK-LVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 194 FNGNELVGSVP---------------RSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQ 238
            N    +  +                  +   + L  L   +   + T    L  L  L+
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 239 VLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN 298
            L + SNK        +     S    L  +NN  +   P     N+  ++  G      
Sbjct: 179 RLDISSNKVSDISVLAKLTNLES----LIATNNQISDITPLGILTNLDELSLNGN----- 229

Query: 299 KSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLN 358
                             + +++  +  LT  T +DL+ N      P  +  L  L  L 
Sbjct: 230 ------------------QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 269

Query: 359 LSQNILSGNIP--------------------SSLGDLTDLESLDLSSNVLDGVIPRELTR 398
           L  N +S   P                    S + +L +L  L L  N +  + P  ++ 
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 399 LTFLAVLNLSRNKLEG 414
           LT L  L  + NK+  
Sbjct: 328 LTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 334 DLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIP 393
            L K +    + +    L  +  L   +  +  +I   +  L +L  ++ S+N L  + P
Sbjct: 28  VLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP 83

Query: 394 -RELTRLTFL 402
            + LT+L  +
Sbjct: 84  LKNLTKLVDI 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 4e-15
 Identities = 41/286 (14%), Positives = 75/286 (26%), Gaps = 25/286 (8%)

Query: 113 SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK 172
             +  +  + NNK          N   +  L L NN +S   P         L  L L K
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSK 88

Query: 173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLG 232
           N+      +       L        ++  SV   L     ++ L     K          
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQ 147

Query: 233 TLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFK-------NM 285
            +++L  + +                    L  L L  N  T    A            +
Sbjct: 148 GMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 286 KAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG--- 342
              +          +       + ++  L+     +   K +     + L  N+      
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI---QVVYLHNNNISAIGS 259

Query: 343 ---EIPELMGKLHSLRLLNLSQN-ILSGNI-PSSLGDLTDLESLDL 383
                P    K  S   ++L  N +    I PS+   +    ++ L
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 47/304 (15%), Positives = 96/304 (31%), Gaps = 39/304 (12%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           C+   +     S+  L   +P+   +      +LDL+ N+        F    NL TL  
Sbjct: 10  CHLRVV---QCSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 62

Query: 195 NGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLREL----------------- 237
             N++    P +      L+ L L  N++K+       TL+EL                 
Sbjct: 63  INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 238 ----QVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE 293
                V+ L +N       +  A     KL  + +++ N T ++P     ++  +   G 
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGN 181

Query: 294 AADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHG--EIPELMGKL 351
              +  +  +        + L            L     +     + +   ++P  +   
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

Query: 352 HSLRLLNLSQNILSG------NIPSSLGDLTDLESLDLSSNVLD--GVIPRELTRLTFLA 403
             ++++ L  N +S         P           + L SN +    + P     +   A
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

Query: 404 VLNL 407
            + L
Sbjct: 302 AVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 7e-12
 Identities = 54/270 (20%), Positives = 86/270 (31%), Gaps = 28/270 (10%)

Query: 164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKM 223
            LRV+          +P+  P   +   L+   N++         N  NL  L L NNK+
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 224 KDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFK 283
               P     L +L+ L L  N+          +     L+ L +  N  T    ++F  
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKEL-----PEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 284 NMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE 343
                                      +  L     E    + +   + I ++  +    
Sbjct: 123 LN-----------------QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 164

Query: 344 IPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLA 403
           IP+  G   SL  L+L  N ++    +SL  L +L  L LS N +  V    L     L 
Sbjct: 165 IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 404 VLNLSRNKLEGRIPEGNQFATFSSDSYGGN 433
            L+L+ NKL                    N
Sbjct: 223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 4e-10
 Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 9/191 (4%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSN--NSL 150
             LE L L  N L+         ++   +  N+       +    + + +++L       
Sbjct: 79  VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 151 SGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNC 210
           SG          K L  + +       TIP+  P   +LT L+ +GN++      SL   
Sbjct: 139 SGIENGAFQGM-KKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGL 194

Query: 211 ANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSN 270
            NL  L L  N +       L     L+ L L +NK                ++++ L N
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL---ADHKYIQVVYLHN 251

Query: 271 NNFTGSLPAMF 281
           NN +      F
Sbjct: 252 NNISAIGSNDF 262

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
             +  S      ++P+ +       LL+L  N ++        +L +L +L L +N +  
Sbjct: 13  RVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSN 447
           + P     L  L  L LS+N+L+    +  +              +     +     
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 23/112 (20%), Positives = 32/112 (28%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDG 390
             +DL  N            L +L  L L  N +S   P +   L  LE L LS N L  
Sbjct: 34  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

Query: 391 VIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGNLGLCGFPLS 442
           +  +    L  L V      K+   +  G                      +
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 10/159 (6%)

Query: 92  WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
            K L Y+ +    +         ++    +  NK        +   + +  L LS NS+S
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 152 GTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNEL------VGSVPR 205
                 + N    LR L L  N+    +P        +  +  + N +          P 
Sbjct: 209 AVDNGSLANTPH-LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 206 SLLNCANLQVLDLGNNKMK--DTFPHWLGTLRELQVLIL 242
                A+   + L +N ++  +  P     +     + L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 46/310 (14%), Positives = 88/310 (28%), Gaps = 30/310 (9%)

Query: 108 PVPAP---SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKS 164
           P P      +  +V      + +  +P  I   +  + + L  N +S             
Sbjct: 1   PCPGACVCYNEPKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNL 58

Query: 165 LRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMK 224
             +                           +  +L    P +      L  L L    ++
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 225 DTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKN 284
           +  P     L  LQ L L+ N       D         L  L L  N  +  +P   F+ 
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDD--TFRDLGNLTHLFLHGNRISS-VPERAFRG 175

Query: 285 MKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEI 344
           + ++  +    +     +                        L    T+ L  N+     
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRD------------------LGRLMTLYLFANNLSALP 217

Query: 345 PELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAV 404
            E +  L +L+ L L+ N    +  +       L+    SS+ +   +P+ L       +
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---L 273

Query: 405 LNLSRNKLEG 414
             L+ N L+G
Sbjct: 274 KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 4e-11
 Identities = 46/297 (15%), Positives = 77/297 (25%), Gaps = 51/297 (17%)

Query: 93  KNLEYLDLRSNLLQGPVP---APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS 149
              + + L  N +            N+ +  + +N             + +E LDLS+N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
              ++     +    L  L L +       P  F     L  L    N L      +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
             NL  L L  N++          L                            L  L L 
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGL--------------------------HSLDRLLLH 185

Query: 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329
            N      P  F    + MT        N    +          L               
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYL---FANNLSALPTEALAPLRAL--------------- 227

Query: 330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG--DLTDLESLDLS 384
              + L+ N +  +          L+    S + +  ++P  L   DL  L + DL 
Sbjct: 228 -QYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 6e-10
 Identities = 50/309 (16%), Positives = 75/309 (24%), Gaps = 50/309 (16%)

Query: 135 CNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNF 194
           C              L   +P        + + + L  NR       +F    NLT L  
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 195 N-GNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRD 253
           +                   Q+    N +++   P     L  L  L L  ++       
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL--DRCGLQELG 121

Query: 254 YEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVT 313
                  + L+ L L +N         F                                
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH------------------------ 157

Query: 314 LIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG 373
                              + L  N            LHSL  L L QN ++   P +  
Sbjct: 158 -------------------LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 374 DLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGN 433
           DL  L +L L +N L  +    L  L  L  L L+ N           +A         +
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258

Query: 434 LGLCGFPLS 442
              C  P  
Sbjct: 259 EVPCSLPQR 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 8e-14
 Identities = 39/264 (14%), Positives = 81/264 (30%), Gaps = 17/264 (6%)

Query: 143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGS 202
           LDL+  +L   +   +   S+ +      ++     + E F     +  ++ + + +  S
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 203 VPRSLL-NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFS 261
               +L  C+ LQ L L   ++ D   + L     L  L L     +            S
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 262 KLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEV 321
           +L  L+LS                 + T         +                      
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV---------- 171

Query: 322 KLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQ-NILSGNIPSSLGDLTDLES 380
              +   +             +  +   +L+ L+ L+LS+   +       LG++  L++
Sbjct: 172 --RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229

Query: 381 LDLSSNVLDGVIPRELTRLTFLAV 404
           L +   V DG +      L  L +
Sbjct: 230 LQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 41/299 (13%), Positives = 83/299 (27%), Gaps = 43/299 (14%)

Query: 98  LDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIP 155
           LDL    L   V     S  +  F    +     +         ++ +DLSN+ +  +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTL 63

Query: 156 ECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQV 215
             I +    L+ L L   R    I  T  K +NL  LN +G                   
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC------------------ 105

Query: 216 LDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTG 275
               +   +      L +   L  L L     +       A  + S+       +     
Sbjct: 106 ----SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 161

Query: 276 SLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDL 335
              +     ++   ++      +      + + E                 L     + L
Sbjct: 162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--------------FFQLNYLQHLSL 207

Query: 336 SK-NSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIP 393
           S+      E    +G++ +L+ L +   +  G +      L     L ++ +    +  
Sbjct: 208 SRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 331 TTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL-D 389
            T+DL+  + H ++   +     +      ++ +   +         ++ +DLS++V+  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 390 GVIPRELTRLTFLAVLNLSRNKLEGRIPE 418
             +   L++ + L  L+L   +L   I  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVN 89

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 4e-12
 Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 28/235 (11%)

Query: 155 PECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQ 214
           P C  +   S   ++  K      +P   PK  + T L+ + N L      +L+    L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 215 VLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFT 274
            L+L   ++             L VL                      L +LD+S N  T
Sbjct: 59  QLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 275 GSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTID 334
             LP    + +  + ++    +E K+   G       +  +                   
Sbjct: 114 S-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL----------------- 155

Query: 335 LSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLD 389
            + N+       L+  L +L  L L +N L   IP        L    L  N   
Sbjct: 156 -ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 33/196 (16%), Positives = 53/196 (27%), Gaps = 51/196 (26%)

Query: 123 NNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH------ 176
           + + +  +P  +       IL LS N L       +  +++ L  L+L +          
Sbjct: 18  DKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQVDG 74

Query: 177 ---------------------------------------GTIPETFPKGNNLTTLNFNGN 197
                                                              L  L   GN
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 198 ELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEAD 257
           EL    P  L     L+ L L NN + +     L  L  L  L+L+ N  Y   + +   
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF--- 191

Query: 258 YYFSKLRILDLSNNNF 273
           +    L    L  N +
Sbjct: 192 FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 349 GKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408
            K+ S   +N  +  L+  +P  L    D   L LS N+L       L   T L  LNL 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 409 RNK 411
           R +
Sbjct: 64  RAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNR 174
            +    ++NN        L+     ++ L L  NSL  TIP+     S  L    L  N 
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNP 206

Query: 175 FH 176
           + 
Sbjct: 207 WL 208

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.3 bits (142), Expect = 1e-10
 Identities = 33/233 (14%), Positives = 69/233 (29%), Gaps = 17/233 (7%)

Query: 178 TIPETFPKGN--NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLR 235
            I   FP     N   +    + +  +V ++ L+   +  L      +       +  L 
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTI--EGVQYLN 63

Query: 236 ELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAA 295
            L  L L+ N+                L  +     +            ++++  +   +
Sbjct: 64  NLIGLELKDNQITDL-------APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116

Query: 296 DENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLR 355
            +              V  +   Q   +  +  +     LS  +        +  L  L 
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176

Query: 356 LLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408
            L    N +S   P  L  L +L  + L +N +  V P  L   + L ++ L+
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 13/212 (6%)

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDL 268
             AN   +  G + + DT       L  +  L          +   E   Y + L  L+L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGLEL 70

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
            +N  T   P      +  +   G       +    ++     +T         L  +  
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL 388
           +             +I  +        L  LS      +  + L +L+ L +L    N +
Sbjct: 131 LQVL-----YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 389 DGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN 420
             + P  L  L  L  ++L  N++    P  N
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSPLAN 215

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 3e-10
 Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 15/210 (7%)

Query: 178 TIPETFPKGN--NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLR 235
            I + F           N     +  +V ++ LN  ++  +   N+ +K      +  L 
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQG--IQYLP 68

Query: 236 ELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAA 295
            +  L L  NK              + L+ L     +          K++K +  +    
Sbjct: 69  NVTKLFLNGNKLTDI-------KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121

Query: 296 DENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLR 355
           +            +     +   +   +  +  +     LS           +  L  L+
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181

Query: 356 LLNLSQNILSGNIPSSLGDLTDLESLDLSS 385
            L LS+N +S     +L  L +L+ L+L S
Sbjct: 182 NLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.6 bits (122), Expect = 4e-08
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 18/225 (8%)

Query: 184 PKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR 243
           P G+   T+     ++      S    A     +L    + D        L  +  +I  
Sbjct: 2   PLGSETITVPTPIKQIF-----SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIAN 54

Query: 244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYM 303
           ++     ++  +   Y   +  L L+ N  T         N+K +  +    ++ K    
Sbjct: 55  NSD----IKSVQGIQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSS 107

Query: 304 GETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNI 363
            +   +     +       +  ++ +     L   +       ++ +L  L  L+L  N 
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167

Query: 364 LSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS 408
           +S  +P  L  LT L++L LS N +  +  R L  L  L VL L 
Sbjct: 168 ISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 53/326 (16%), Positives = 98/326 (30%), Gaps = 22/326 (6%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
           +    L+L +  L   +P    ++   + S N  + E+P L  +  ++ + + +  +LS 
Sbjct: 38  RQAHELELNNLGLSS-LPELPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSD 95

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN 212
             P        + ++  L + +    +       N+L  L      L      +      
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 213 LQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNN 272
            ++ +L          + L  L +L + +         L +         L  +   NN 
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 273 FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTT 332
                          + D                  E   +L        +   L+    
Sbjct: 216 LKTLPDLPPSLEALNVRD-----------NYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 333 IDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI 392
                N+   EI  L     SL  LN+S N L   +P+       LE L  S N L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL-AEV 319

Query: 393 PRELTRLTFLAVLNLSRNKLEGRIPE 418
           P     L     L++  N L    P+
Sbjct: 320 PELPQNLK---QLHVEYNPLRE-FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 122 SNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE 181
             N    EI  L     ++E L++SNN L   +P         L  L    N     +PE
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHL-AEVPE 321

Query: 182 TFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQV 215
                 NL  L+   N L    P    +  +L++
Sbjct: 322 LPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 92  WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLS 151
             +LE L++ +N L   +PA    +   + S N  + E+P L  N   ++ L +  N L 
Sbjct: 283 PPSLEELNVSNNKLIE-LPALPPRLERLIASFNH-LAEVPELPQN---LKQLHVEYNPLR 337

Query: 152 GTIPECIGNFSKSLRV 167
              P+   +  + LR+
Sbjct: 338 -EFPDIPESV-EDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 193 NFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR 252
            +  N     +        +L+ L++ NNK+    P        L+ LI   N     + 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL-AEVP 320

Query: 253 DYEADYYFSKLRILDLSNNNFTGSLPAMF 281
           +         L+ L +  N      P + 
Sbjct: 321 EL-----PQNLKQLHVEYNPLR-EFPDIP 343

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 9e-09
 Identities = 26/231 (11%), Positives = 48/231 (20%), Gaps = 10/231 (4%)

Query: 188 NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKF 247
           +        +++   +P  L    N   L     K++           +L+ + +  N  
Sbjct: 9   SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 248 YGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTD-------IGEAADENKS 300
              +             I     NN     P  F                          
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLS 360
                         I   +    + +      + L+KN                 L    
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 361 QNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNK 411
            N L           +    LD+S   +  +    L  L  L   +    K
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 19/256 (7%), Positives = 60/256 (23%), Gaps = 22/256 (8%)

Query: 131 PRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLT 190
              IC+ S   +     + ++  IP    +  ++   L     +        F    +L 
Sbjct: 2   HHRICHCSN-RVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 56

Query: 191 TLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250
            +  + N+++  +   + +                 + +                     
Sbjct: 57  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-----------------EAF 99

Query: 251 LRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYED 310
                  Y       +    +            +++   +I      +      E+    
Sbjct: 100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 159

Query: 311 SVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPS 370
                I+           +        N+      ++        +L++S+  +      
Sbjct: 160 LNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 219

Query: 371 SLGDLTDLESLDLSSN 386
            L +L  L +    + 
Sbjct: 220 GLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 13/79 (16%), Positives = 24/79 (30%)

Query: 168 LDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTF 227
           L L KN         F           + N L           +   +LD+   ++    
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 228 PHWLGTLRELQVLILRSNK 246
            + L  L++L+     + K
Sbjct: 218 SYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 27/246 (10%), Positives = 58/246 (23%), Gaps = 21/246 (8%)

Query: 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH 176
           RVFL   +K + EIP  +        L      L          F      +++ +N   
Sbjct: 11  RVFLCQESK-VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDL-EKIEISQNDVL 66

Query: 177 GTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRE 236
             I                                NL  ++    +      + L +   
Sbjct: 67  EVIEADVFSNLPKLHEIRIE------------KANNLLYINPEAFQNLPNLQYLLISNTG 114

Query: 237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD 296
           ++ L              +     +   I   S    +     ++            A +
Sbjct: 115 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN 174

Query: 297 ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRL 356
             +   +  +   +   L        +    +    +D+S+   H      +  L  LR 
Sbjct: 175 GTQLDELNLSDNNNLEELPN-----DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 229

Query: 357 LNLSQN 362
            +    
Sbjct: 230 RSTYNL 235

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 37/323 (11%), Positives = 87/323 (26%), Gaps = 21/323 (6%)

Query: 127 IGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNF---SKSLRVLDLRKNRFHGTIPETF 183
              +  ++    +++ + LS N++       +       K L + +           E  
Sbjct: 20  EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP 79

Query: 184 PKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHW-LGTLRELQVLIL 242
                L        +L              Q   +          H  L           
Sbjct: 80  EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 139

Query: 243 RSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKY 302
           +  +    L   +       LR +    N         + K  ++   +         K 
Sbjct: 140 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT------VKM 193

Query: 303 MGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQN 362
           +      + +  ++        ++  +    +   +     +   +    +LR L L+  
Sbjct: 194 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 253

Query: 363 ILSGNIPSSLGD------LTDLESLDLSSNVLDGVIPREL-----TRLTFLAVLNLSRNK 411
           +LS    +++ D         L++L L  N ++    R L      ++  L  L L+ N+
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313

Query: 412 LEGRIPEGNQFATFSSDSYGGNL 434
                   ++     S    G L
Sbjct: 314 FSEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 30/323 (9%), Positives = 83/323 (25%), Gaps = 42/323 (13%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNS--- 149
            +++ + L  N +                   +    +   I +   +EI + S+     
Sbjct: 31  DSVKEIVLSGNTI-----------------GTEAARWLSENIASKKDLEIAEFSDIFTGR 73

Query: 150 LSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN 209
           +   IPE +    ++L     + +    +     P          + +  +  +      
Sbjct: 74  VKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132

Query: 210 CANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLS 269
                   +     +            L+ +I   N+         A  +         S
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ--------S 184

Query: 270 NNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTI 329
           +               + +  +         +       +++ T +        +K    
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 330 FTTIDLSKNSFHGEIPELMG------KLHSLRLLNLSQNILSGNIPSSLGD-----LTDL 378
              + L+           +       +   L+ L L  N +  +   +L       + DL
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 379 ESLDLSSNVL--DGVIPRELTRL 399
             L+L+ N    +  +  E+  +
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREV 327

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 3e-07
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 331 TTIDLSKNSF-HGEIPELMGKLHSLRLLNLSQNILSG----NIPSSLGDLTDLESLDLSS 385
            ++D+           EL+  L   +++ L    L+     +I S+L     L  L+L S
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 386 NVLDGVIPRELTRL-----TFLAVLNLS 408
           N L  V    + +        +  L+L 
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 6e-07
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 9/100 (9%)

Query: 140 IEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHG----TIPETFPKGNNLTTLNFN 195
           I+ LD+    LS      +    +  +V+ L            I         L  LN  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 196 GNELVGSVPRSLL-----NCANLQVLDLGNNKMKDTFPHW 230
            NEL       +L         +Q L L N  +       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 6e-07
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 162 SKSLRVLDLRKNRF-HGTIPETFPKGNNLTTLNFNGNEL----VGSVPRSLLNCANLQVL 216
           S  ++ LD++          E  P       +  +   L       +  +L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 217 DLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH 250
           +L +N++ D   H +    +     ++       
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 8e-07
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 156 ECIGNFSKSLRVLDLRKNRFHGT----IPETFPKGNNLTTLNFNGNELVGSVPRSLL--- 208
           + +G     LRVL L       +    +  T    ++L  L+ + N L  +    L+   
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 209 --NCANLQVLDLGNNKMKDTFPHWLGTLRE 236
                 L+ L L +    +     L  L +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 9/78 (11%)

Query: 331 TTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPSSLGD-----LTDLESL 381
             + L+           +   +   HSLR L+LS N L       L +        LE L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 382 DLSSNVLDGVIPRELTRL 399
            L        +   L  L
Sbjct: 432 VLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 212 NLQVLDLGNNKMKDT-FPHWLGTLRELQVLILRSNKFYGHLRDY--EADYYFSKLRILDL 268
           ++Q LD+   ++ D  +   L  L++ QV+ L               A      L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 269 SNNNFTGSLPAMFFKNMK 286
            +N           + ++
Sbjct: 63  RSNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 14/96 (14%)

Query: 94  NLEYLDLRSNLLQGPVPAPS-----SNMRVFLISNNKF----IGEIPRLICNTSTIEILD 144
           +++ LD++   L                +V  + +         +I   +     +  L+
Sbjct: 3   DIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 145 LSNNSLSGTIPECIG----NFSKSLRVLDLRKNRFH 176
           L +N L      C+       S  ++ L L+     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 352 HSLRLLNLSQNILSGN----IPSSLGDLTDLESLDLSSNVLDGVIPRELTR-----LTFL 402
             LR+L L+   +S +    + ++L     L  LDLS+N L      +L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 403 AVLNLSRNKLEGRIPE 418
             L L        + +
Sbjct: 429 EQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 9e-05
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 25/98 (25%)

Query: 187 NNLTTLNFNGNEL----VGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLIL 242
           + L  L     ++      S+  +LL   +L+ LDL NN + D     L          +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES-------V 421

Query: 243 RSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAM 280
           R                   L  L L +  ++  +   
Sbjct: 422 RQPG--------------CLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 353 SLRLLNLSQNILSGN-IPSSLGDLTDLESLDLSSNVLDGV----IPRELTRLTFLAVLNL 407
            ++ L++    LS       L  L   + + L    L       I   L     LA LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 408 SRNKLEGRIPE 418
             N+L      
Sbjct: 63  RSNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 15/93 (16%)

Query: 91  PWKNLEYLDLRSNLLQGPVPAP-------SSNMRVFLISNNKFIGEIPRLIC-----NTS 138
           P   L  L L    +     +        + ++R   +SNN         +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 139 TIEILDLSNNSLSGTIPECIGNFSK---SLRVL 168
            +E L L +   S  + + +    K   SLRV+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 9/74 (12%)

Query: 322 KLMKILTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPSSLGDL-- 375
           +L+ +L     + L            I   +    +L  LNL  N L       +     
Sbjct: 21  ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80

Query: 376 ---TDLESLDLSSN 386
                ++ L L + 
Sbjct: 81  TPSCKIQKLSLQNC 94

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 166 RVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD 225
           RVL L       T+     +   +T L+ + N L    P +L     L+VL   +N +++
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 226 TFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTG 275
                   L  LQ L+L +N+        +      +L +L+L  N+   
Sbjct: 58  VDGVA--NLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 93  KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSG 152
             + +LDL  N L+   PA ++   + ++  +    E    + N   ++ L L NN L  
Sbjct: 20  LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 79

Query: 153 TIPECIGNFSKSLRVLDLRKNRFHG------TIPETFPKGNNLTT 191
           +           L +L+L+ N           + E  P  +++ T
Sbjct: 80  SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFH 176
           RV  +++      +   +     +  LDLS+N L    P      +    +  L+ +   
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNA 54

Query: 177 GTIPETFPKGNNLTTLNFNGNELVG-SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLR 235
               +       L  L    N L   +  + L++C  L +L+L  N +          L 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 236 EL 237
           E+
Sbjct: 114 EM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 24/105 (22%)

Query: 332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPS--------------------- 370
            + L+       +   + +L  +  L+LS N L    P+                     
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 371 SLGDLTDLESLDLSSNVLDGV-IPRELTRLTFLAVLNLSRNKLEG 414
            + +L  L+ L L +N L      + L     L +LNL  N L  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 15/205 (7%)

Query: 179 IPETFPKGN--NLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRE 236
           I + F                 +  +V ++ L+   +  L      +K      +  L  
Sbjct: 8   INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGIKSI--DGVEYLNN 63

Query: 237 LQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAAD 296
           L  +   +N+                L  L     N           N+  +T +    +
Sbjct: 64  LTQINFSNNQLTDI-------TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 116

Query: 297 ENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRL 356
           +       +     +   +       +  +  + +   L+ +S      + +  L +L  
Sbjct: 117 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLER 176

Query: 357 LNLSQNILSGNIPSSLGDLTDLESL 381
           L++S N +S    S L  LT+LESL
Sbjct: 177 LDISSNKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 12/195 (6%)

Query: 209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDL 268
             A      LG   + DT       L ++  L          ++  +   Y + L  ++ 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQINF 69

Query: 269 SNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILT 328
           SNN  T        KN+  + DI    ++             +   +   Q   +  +  
Sbjct: 70  SNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 126

Query: 329 IFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVL 388
           +     L  +S        +  L SL+ LN S N ++   P  L +LT LE LD+SSN +
Sbjct: 127 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV 184

Query: 389 DGV-IPRELTRLTFL 402
             + +  +LT L  L
Sbjct: 185 SDISVLAKLTNLESL 199

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 8e-06
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 1/127 (0%)

Query: 122 SNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPE 181
           + +  + +    +     +  L + N      +          LR L + K+      P+
Sbjct: 16  TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 182 TFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLI 241
            F     L+ LN + N L     +++   +  +++  GN         WL    E  +  
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134

Query: 242 LRSNKFY 248
           +   K  
Sbjct: 135 VPEQKLQ 141

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 5/159 (3%)

Query: 123 NNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPET 182
             + + EIPR I        L L++N L     + +      L  L+L++N+  G  P  
Sbjct: 16  TGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 183 FPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLIL 242
           F   +++  L    N++     +  L    L+ L+L +N++    P     L  L  L L
Sbjct: 74  FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

Query: 243 RSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMF 281
            SN F     +    ++   LR   L+        P+  
Sbjct: 134 ASNPFNC---NCHLAWFAEWLRKKSLNGGAARCGAPSKV 169

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSG--NIPSSLGDLTDLESLDLS 384
             I   ++   +     +  +   +  L  LNLS N L    ++ S +    +L+ L+LS
Sbjct: 41  QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS 99

Query: 385 SNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATF 425
            N L      +  +   L  L L  N L     + + + + 
Sbjct: 100 GNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 13/136 (9%)

Query: 139 TIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNE 198
           + + LDL        +            VL+ R +    T+         L +LN + N 
Sbjct: 23  SQQALDLKGLRSDPDLVAQ-----NIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNR 76

Query: 199 LVG--SVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEA 256
           L     +   +    NL++L+L  N++K           +L+ L L  N      RD   
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 257 D-----YYFSKLRILD 267
                   F KL  LD
Sbjct: 137 YISAIRERFPKLLRLD 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 351 LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRN 410
               R L+L    +   I +    L   +++D S N +  +       L  L  L ++ N
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNN 73

Query: 411 KLEGRIPEGNQFATFSSDSYGGNLGLCGFPLSKNCSN 447
           ++       +Q     ++    N  L         ++
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	523
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.94

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.1e-32  Score=261.25  Aligned_cols=258  Identities=29%  Similarity=0.507  Sum_probs=205.4

Q ss_pred             CCcEEEccCCcCCC--cCchhhhCCCCcCEEEccC-CcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCE
Q 009858          115 NMRVFLISNNKFIG--EIPRLICNTSTIEILDLSN-NSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTT  191 (523)
Q Consensus       115 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  191 (523)
                      +++.|+|+++.+.+  .+|..++++++|++|+|++ |+++|.+|..++++. +|++|+|++|++.+..+..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc-ccchhhhccccccccccccccchhhhcc
Confidence            45555566655554  4677888888888888886 778888888888887 7888888888888877777888888888


Q ss_pred             EECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCC-CeEEeccccccCcCCCccccccCCCCcEEeccC
Q 009858          192 LNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLREL-QVLILRSNKFYGHLRDYEADYYFSKLRILDLSN  270 (523)
Q Consensus       192 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  270 (523)
                      +++++|.+.+.+|..+.++++|+++++++|.+.+.+|..+..+..+ +.++++.|.+.+..+..+               
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~---------------  194 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF---------------  194 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG---------------
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc---------------
Confidence            8888888887888888888888888888888877777777666554 455555555443322221               


Q ss_pred             ccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcC
Q 009858          271 NNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGK  350 (523)
Q Consensus       271 n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  350 (523)
                                  .                                           ......++++++...+.+|..+..
T Consensus       195 ------------~-------------------------------------------~l~~~~l~l~~~~~~~~~~~~~~~  219 (313)
T d1ogqa_         195 ------------A-------------------------------------------NLNLAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             ------------G-------------------------------------------GCCCSEEECCSSEEEECCGGGCCT
T ss_pred             ------------c-------------------------------------------cccccccccccccccccccccccc
Confidence                        1                                           112335677777777788888889


Q ss_pred             cccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCcc
Q 009858          351 LHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSY  430 (523)
Q Consensus       351 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  430 (523)
                      +++|+.+++++|.+.+.+| .++.+++|+.|+|++|++++.+|..|.++++|++|+|++|+++|.+|....+..+....+
T Consensus       220 ~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l  298 (313)
T d1ogqa_         220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHh
Confidence            9999999999999987655 588899999999999999999999999999999999999999999999888889999999


Q ss_pred             CCCCCCCCCCCCCCC
Q 009858          431 GGNLGLCGFPLSKNC  445 (523)
Q Consensus       431 ~gn~~lc~~~~~~~c  445 (523)
                      .||+.+||.|++ .|
T Consensus       299 ~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         299 ANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CSSSEEESTTSS-CC
T ss_pred             CCCccccCCCCC-CC
Confidence            999999999875 55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=3e-29  Score=240.24  Aligned_cols=247  Identities=27%  Similarity=0.405  Sum_probs=200.7

Q ss_pred             CCccEEEccCCCCccC--CCCC---CCCCcEEEccC-CcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCc
Q 009858           93 KNLEYLDLRSNLLQGP--VPAP---SSNMRVFLISN-NKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLR  166 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~--~~~~---~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~  166 (523)
                      .+++.|+|+++++++.  +|..   +++|++|+|++ |.+++.+|..|+++++|++|+|++|++.+..|..+..+. .|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh-hhc
Confidence            4799999999999874  4554   99999999997 889999999999999999999999999988888888887 899


Q ss_pred             EEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCC-cEEECCCCcCCCCchHhhhcCCCCCeEEeccc
Q 009858          167 VLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL-QVLDLGNNKMKDTFPHWLGTLRELQVLILRSN  245 (523)
Q Consensus       167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  245 (523)
                      ++++++|.+.+.+|..+..++.|+++++++|.+.+.+|..+..+.++ +.+++++|++++..|..+..+..+ .+++..+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            99999999999999999999999999999999999999999888886 899999999998888888776544 6777777


Q ss_pred             cccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHH
Q 009858          246 KFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMK  325 (523)
Q Consensus       246 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (523)
                      ...+..+...  ..+                                                                 
T Consensus       208 ~~~~~~~~~~--~~~-----------------------------------------------------------------  220 (313)
T d1ogqa_         208 MLEGDASVLF--GSD-----------------------------------------------------------------  220 (313)
T ss_dssp             EEEECCGGGC--CTT-----------------------------------------------------------------
T ss_pred             cccccccccc--ccc-----------------------------------------------------------------
Confidence            6655444333  233                                                                 


Q ss_pred             hhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858          326 ILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL  405 (523)
Q Consensus       326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  405 (523)
                        ++++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..|+++++|++|+|++|+++|.+|. +.++++|+.+
T Consensus       221 --~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l  296 (313)
T d1ogqa_         221 --KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS  296 (313)
T ss_dssp             --SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGG
T ss_pred             --cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHH
Confidence              444555555555554433 456667788888888888877888888888888888888888877774 5677788888


Q ss_pred             ECCCCcC
Q 009858          406 NLSRNKL  412 (523)
Q Consensus       406 ~Ls~N~l  412 (523)
                      ++++|+.
T Consensus       297 ~l~~N~~  303 (313)
T d1ogqa_         297 AYANNKC  303 (313)
T ss_dssp             GTCSSSE
T ss_pred             HhCCCcc
Confidence            8888874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.2e-25  Score=211.17  Aligned_cols=267  Identities=21%  Similarity=0.226  Sum_probs=209.8

Q ss_pred             CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858           94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n  173 (523)
                      ..+.+|-++.+++..++...+++++|+|++|+++...+.+|.++++|++|++++|.+....|..|..+. +|++|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~-~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC-ccCEecccCC
Confidence            557788888888866555578899999999999876667899999999999999999855577788887 8999999999


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCC--CCchHhhhcCCCCCeEEeccccccCcC
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMK--DTFPHWLGTLRELQVLILRSNKFYGHL  251 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~  251 (523)
                      +++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.+... 
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-  165 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-  165 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred             ccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-
Confidence            998 455443  357889999999988776667778888888988887543  23455678888999999999887643 


Q ss_pred             CCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccc
Q 009858          252 RDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFT  331 (523)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  331 (523)
                      +.    ..+++|+.|++++|...+..+.. +                                          ..++.++
T Consensus       166 ~~----~~~~~L~~L~l~~n~~~~~~~~~-~------------------------------------------~~~~~l~  198 (305)
T d1xkua_         166 PQ----GLPPSLTELHLDGNKITKVDAAS-L------------------------------------------KGLNNLA  198 (305)
T ss_dssp             CS----SCCTTCSEEECTTSCCCEECTGG-G------------------------------------------TTCTTCC
T ss_pred             Cc----ccCCccCEEECCCCcCCCCChhH-h------------------------------------------hcccccc
Confidence            22    23678999999998877444322 2                                          2256778


Q ss_pred             cccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhh------cCCCCCCeE
Q 009858          332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPREL------TRLTFLAVL  405 (523)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l------~~l~~L~~L  405 (523)
                      .|++++|.+.+..+.++.++++|++|+|++|+++ .+|.+|..+++|++|+|++|+|+......|      ..+++|+.|
T Consensus       199 ~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L  277 (305)
T d1xkua_         199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV  277 (305)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred             ccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEE
Confidence            8889999998777888888999999999999998 578889999999999999999986544443      456789999


Q ss_pred             ECCCCcCc
Q 009858          406 NLSRNKLE  413 (523)
Q Consensus       406 ~Ls~N~l~  413 (523)
                      +|++|++.
T Consensus       278 ~L~~N~~~  285 (305)
T d1xkua_         278 SLFSNPVQ  285 (305)
T ss_dssp             ECCSSSSC
T ss_pred             ECCCCcCc
Confidence            99999885

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=3.1e-25  Score=218.39  Aligned_cols=78  Identities=28%  Similarity=0.399  Sum_probs=41.4

Q ss_pred             hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEE
Q 009858          327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLN  406 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  406 (523)
                      +++++.|++++|++++..+  +..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+
T Consensus       306 ~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred             hcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEee
Confidence            4555555555555553321  4455555555555555552 32 35555555555555555554432  55555555555


Q ss_pred             CCCC
Q 009858          407 LSRN  410 (523)
Q Consensus       407 Ls~N  410 (523)
                      |++|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            5554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.3e-24  Score=205.15  Aligned_cols=265  Identities=24%  Similarity=0.305  Sum_probs=212.8

Q ss_pred             CCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEE
Q 009858          115 NMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLN  193 (523)
Q Consensus       115 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  193 (523)
                      ..+.++-++++++ .+|..+  .+++++|+|++|+++ .+|+ .|..+. +|++|++++|.+....|..|.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~-~l~~~~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCC-CcChhHhhccc-cccccccccccccccchhhhhCCCccCEec
Confidence            4677888888888 556555  368999999999998 6665 677887 899999999999988888999999999999


Q ss_pred             CcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccC
Q 009858          194 FNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNF  273 (523)
Q Consensus       194 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  273 (523)
                      +++|+++ .+|..+  ...++.|++..|.+.+..+..+.....+..+....|..............+++|+.+++++|.+
T Consensus        86 l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          86 LSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            9999998 455433  4688999999999987777778888888899888876543333333346688999999999987


Q ss_pred             CCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCccc
Q 009858          274 TGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHS  353 (523)
Q Consensus       274 ~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  353 (523)
                      . .+|...                                             +++|+.|++++|..++..+..+..++.
T Consensus       163 ~-~l~~~~---------------------------------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~  196 (305)
T d1xkua_         163 T-TIPQGL---------------------------------------------PPSLTELHLDGNKITKVDAASLKGLNN  196 (305)
T ss_dssp             C-SCCSSC---------------------------------------------CTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred             c-ccCccc---------------------------------------------CCccCEEECCCCcCCCCChhHhhcccc
Confidence            6 444221                                             467899999999999888899999999


Q ss_pred             CCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCC--------CCCcc
Q 009858          354 LRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGN--------QFATF  425 (523)
Q Consensus       354 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~--------~~~~~  425 (523)
                      ++.|++++|.+++..+.++.++++|++|+|++|+++ .+|..|..+++|++|++++|+++ .++...        ...++
T Consensus       197 l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L  274 (305)
T d1xkua_         197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASY  274 (305)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCC
T ss_pred             ccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCC
Confidence            999999999999888899999999999999999998 45778999999999999999998 444321        12334


Q ss_pred             cCCccCCCCC
Q 009858          426 SSDSYGGNLG  435 (523)
Q Consensus       426 ~~~~~~gn~~  435 (523)
                      ..+.+.||+.
T Consensus       275 ~~L~L~~N~~  284 (305)
T d1xkua_         275 SGVSLFSNPV  284 (305)
T ss_dssp             SEEECCSSSS
T ss_pred             CEEECCCCcC
Confidence            4455666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=209.56  Aligned_cols=227  Identities=25%  Similarity=0.247  Sum_probs=184.1

Q ss_pred             EEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC-C
Q 009858          142 ILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG-N  220 (523)
Q Consensus       142 ~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~-~  220 (523)
                      .++.++++++ .+|..+   ++++++|+|++|+++...+..|.++++|++|++++|++....+..+.+++.++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566777777 777654   3468888888888886666778888888888888888887777777788888888765 4


Q ss_pred             CcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccc
Q 009858          221 NKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS  300 (523)
Q Consensus       221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~  300 (523)
                      +.+....+..+.++++|++|++++|.+....+..+  ...++|+.+++++|.++ .+|...+..                
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~-~i~~~~f~~----------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD----------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT----------------
T ss_pred             cccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhcccccc-ccChhHhcc----------------
Confidence            55665567778888888888888888765555444  55778889999998887 455433322                


Q ss_pred             cccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCE
Q 009858          301 KYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLES  380 (523)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  380 (523)
                                                +++|+.|++++|.+.+..+.+|.++++|+.+++++|++++..|..|..+++|++
T Consensus       152 --------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         152 --------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             --------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             --------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence                                      567888999999999777888999999999999999999988999999999999


Q ss_pred             EeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCC
Q 009858          381 LDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIP  417 (523)
Q Consensus       381 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  417 (523)
                      |++++|++.+..+..|..+++|++|++++|++.+..+
T Consensus       206 L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            9999999999999999999999999999999987654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=9.9e-24  Score=207.50  Aligned_cols=300  Identities=22%  Similarity=0.282  Sum_probs=216.6

Q ss_pred             CCCCccEEEccCCCCccCCC-CCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEE
Q 009858           91 PWKNLEYLDLRSNLLQGPVP-APSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLD  169 (523)
Q Consensus        91 ~~~~L~~L~L~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~  169 (523)
                      .+.+|++|+++++.++.... ..+++|++|++++|++++..  .+.++++|++|++++|++. .++. +..+. +|+.|+
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~-l~~l~-~L~~L~  116 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-LANLT-NLTGLT  116 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GTTCT-TCCEEE
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc-ccccc-cccccc
Confidence            35789999999999986432 23999999999999998654  3899999999999999998 4543 77887 899999


Q ss_pred             ccCCcccccCCCCCCCCCCCCEEECcCCCC-----------------------------------------CCCCCcccc
Q 009858          170 LRKNRFHGTIPETFPKGNNLTTLNFNGNEL-----------------------------------------VGSVPRSLL  208 (523)
Q Consensus       170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-----------------------------------------~~~~~~~l~  208 (523)
                      ++++.+++..+..  ....+..+....|.+                                         .......+.
T Consensus       117 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         117 LFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             CCSSCCCCCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            9999887543321  222333332222111                                         012233456


Q ss_pred             CCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccc
Q 009858          209 NCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAM  288 (523)
Q Consensus       209 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L  288 (523)
                      .+++++.+++++|.+.+..|  +..+++|++|++++|.+.+..    ....+++|+.|++++|.+++..+   +..+++|
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~L  265 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP---LSGLTKL  265 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG---GTTCTTC
T ss_pred             cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc----hhhcccccchhccccCccCCCCc---ccccccC
Confidence            67888888998888876544  456788889999888776431    22567888999999888874433   5667777


Q ss_pred             cccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccC
Q 009858          289 TDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNI  368 (523)
Q Consensus       289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  368 (523)
                      +.++++.+....                    ...+..++.++.+++++|.+++ + ..+..++++++|++++|++++. 
T Consensus       266 ~~L~l~~~~l~~--------------------~~~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l-  322 (384)
T d2omza2         266 TELKLGANQISN--------------------ISPLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDI-  322 (384)
T ss_dssp             SEEECCSSCCCC--------------------CGGGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCC-
T ss_pred             CEeeccCcccCC--------------------CCcccccccccccccccccccc-c-cccchhcccCeEECCCCCCCCC-
Confidence            777766443211                    0112336778899999999884 3 3477889999999999999964 


Q ss_pred             CccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCcccCCCCCCCCcccCCccCCC
Q 009858          369 PSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGRIPEGNQFATFSSDSYGGN  433 (523)
Q Consensus       369 p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gn  433 (523)
                      + .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..| ...+..+..+...+|
T Consensus       323 ~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         323 S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            3 37899999999999999985 33 68999999999999999996654 344555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.5e-24  Score=200.80  Aligned_cols=251  Identities=20%  Similarity=0.158  Sum_probs=149.5

Q ss_pred             EEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc-CCcc
Q 009858           97 YLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR-KNRF  175 (523)
Q Consensus        97 ~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~-~n~l  175 (523)
                      .++.++++++..+....+++++|+|++|+++...+.+|.++++|++|++++|.+....+..+.... .++.++.. .+.+
T Consensus        15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~-~~~~l~~~~~~~~   93 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQL   93 (284)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTC
T ss_pred             EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc-ccccccccccccc
Confidence            456666666644333355677777777777766666677777777777777777644444444444 56666554 4455


Q ss_pred             cccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCcc
Q 009858          176 HGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYE  255 (523)
Q Consensus       176 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  255 (523)
                      +...+..|.++++|++|++++|.+....+..+..+++|+.+++++|.+++..+..|..+++|+.|++++|.+.+..+..+
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh
Confidence            55556666667777777777776665555556666667777777766665545555555555566555555543333332


Q ss_pred             ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccC
Q 009858          256 ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDL  335 (523)
Q Consensus       256 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  335 (523)
                        ..                                                                   +++|+.+++
T Consensus       174 --~~-------------------------------------------------------------------l~~L~~l~l  184 (284)
T d1ozna_         174 --RG-------------------------------------------------------------------LHSLDRLLL  184 (284)
T ss_dssp             --TT-------------------------------------------------------------------CTTCCEEEC
T ss_pred             --cc-------------------------------------------------------------------ccccchhhh
Confidence              22                                                                   345555556


Q ss_pred             CCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECCCCcCccc
Q 009858          336 SKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLSRNKLEGR  415 (523)
Q Consensus       336 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  415 (523)
                      ++|.+++..|..|..+++|++|++++|.+.+..+..|+.+++|++|+|++|.+....+.. .-...++.+....+.+.+.
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~  263 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCS  263 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEE
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeC
Confidence            666666555666666777777777777777666666777777777777777666432211 0011233444455566655


Q ss_pred             CCC
Q 009858          416 IPE  418 (523)
Q Consensus       416 ~p~  418 (523)
                      .|.
T Consensus       264 ~p~  266 (284)
T d1ozna_         264 LPQ  266 (284)
T ss_dssp             ESG
T ss_pred             Cch
Confidence            553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-22  Score=186.12  Aligned_cols=184  Identities=21%  Similarity=0.216  Sum_probs=158.6

Q ss_pred             CCCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEcc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLR  171 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~  171 (523)
                      ...+.+++.+++.++..++...+++++|+|++|.+++..+.+|.++++|++|+|++|+++ .+|. ++.+. +|++|+++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~-~L~~L~Ls   85 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLP-VLGTLDLS   85 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCT-TCCEEECC
T ss_pred             cCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccc-cccccccc
Confidence            356677899999998754444678999999999999877788999999999999999998 6664 45666 89999999


Q ss_pred             CCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcC
Q 009858          172 KNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL  251 (523)
Q Consensus       172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  251 (523)
                      +|+++ ..+..+..+++|++|++++|.+.+..+..+..+.++++|++++|.+....+..+..+++++.+++++|.+.+..
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            99998 45778899999999999999998877888899999999999999999877788889999999999999998877


Q ss_pred             CCccccccCCCCcEEeccCccCCCCCchHHH
Q 009858          252 RDYEADYYFSKLRILDLSNNNFTGSLPAMFF  282 (523)
Q Consensus       252 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  282 (523)
                      +..+  ..+++|++|+|++|.++ .+|..++
T Consensus       165 ~~~~--~~l~~L~~L~Ls~N~L~-~lp~~~~  192 (266)
T d1p9ag_         165 AGLL--NGLENLDTLLLQENSLY-TIPKGFF  192 (266)
T ss_dssp             TTTT--TTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             cccc--ccccccceeecccCCCc-ccChhHC
Confidence            7766  66899999999999998 7886644

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.3e-22  Score=183.90  Aligned_cols=200  Identities=25%  Similarity=0.275  Sum_probs=165.8

Q ss_pred             CCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEec
Q 009858          164 SLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILR  243 (523)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  243 (523)
                      .+.+.+.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|.++. ++ .++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence            5677899999999 5676664  579999999999987666789999999999999999974 44 35789999999999


Q ss_pred             cccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHH
Q 009858          244 SNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKL  323 (523)
Q Consensus       244 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (523)
                      +|++.+..+ .+  ..+++|+.|++++|.+. .++...+                                         
T Consensus        86 ~N~l~~~~~-~~--~~l~~L~~L~l~~~~~~-~~~~~~~-----------------------------------------  120 (266)
T d1p9ag_          86 HNQLQSLPL-LG--QTLPALTVLDVSFNRLT-SLPLGAL-----------------------------------------  120 (266)
T ss_dssp             SSCCSSCCC-CT--TTCTTCCEEECCSSCCC-CCCSSTT-----------------------------------------
T ss_pred             ccccccccc-cc--ccccccccccccccccc-eeecccc-----------------------------------------
Confidence            999876543 33  56889999999999887 3332211                                         


Q ss_pred             HHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCC
Q 009858          324 MKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLA  403 (523)
Q Consensus       324 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  403 (523)
                       ..+.+++.|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+++ .+|+.+..+++|+
T Consensus       121 -~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~  198 (266)
T d1p9ag_         121 -RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (266)
T ss_dssp             -TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             -ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCC
Confidence             12577889999999999777788888999999999999999887888999999999999999999 6777788899999


Q ss_pred             eEECCCCcCccc
Q 009858          404 VLNLSRNKLEGR  415 (523)
Q Consensus       404 ~L~Ls~N~l~~~  415 (523)
                      .|+|++|++.+.
T Consensus       199 ~L~L~~Np~~Cd  210 (266)
T d1p9ag_         199 FAFLHGNPWLCN  210 (266)
T ss_dssp             EEECCSCCBCCS
T ss_pred             EEEecCCCCCCC
Confidence            999999999754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=3.6e-18  Score=165.04  Aligned_cols=286  Identities=21%  Similarity=0.267  Sum_probs=141.9

Q ss_pred             CccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858           94 NLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n  173 (523)
                      ++++|||+++.++. +|..+++|++|++++|+++ .+|..   ..+|+.|++++|+++ .++.    +++.|++|++++|
T Consensus        39 ~l~~LdLs~~~L~~-lp~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPELPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSCCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCCCC-CCCCCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hcccccccccccc
Confidence            45666666666653 4445566666666666666 34433   345666666666665 4432    2335666666666


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcC--
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHL--  251 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--  251 (523)
                      .+. .+|. ++.+++|++|++++|.+... +.   ....+..+.+..+....  +..+..++.++.+.+..|......  
T Consensus       109 ~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~~~  180 (353)
T d1jl5a_         109 QLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPDL  180 (353)
T ss_dssp             CCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCCCC
T ss_pred             ccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceecccccccccccccc
Confidence            665 3342 45566666666666655421 11   12333334433333221  122333344444444333321110  


Q ss_pred             --------------CCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEec
Q 009858          252 --------------RDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIK  317 (523)
Q Consensus       252 --------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (523)
                                    ........++.|+.+++++|... .++..    ...+..+.+..+........   ..........
T Consensus       181 ~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~----~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~  252 (353)
T d1jl5a_         181 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTDLPEL---PQSLTFLDVS  252 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccccc----cccccccccccccccccccc---cccccccccc
Confidence                          01111244677888888877665 33321    12222222221111100000   0000000000


Q ss_pred             chhHH-HHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhh
Q 009858          318 RQEVK-LMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPREL  396 (523)
Q Consensus       318 ~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l  396 (523)
                      ..... ...........++..+.+.    .....+++|++|+|++|+++ .+|..   +++|+.|+|++|+|+. +|.. 
T Consensus       253 ~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~-l~~~-  322 (353)
T d1jl5a_         253 ENIFSGLSELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAE-VPEL-  322 (353)
T ss_dssp             SSCCSEESCCCTTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCC-
T ss_pred             cccccccccccchhcccccccCccc----cccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCc-cccc-
Confidence            00000 0000122233444444444    22234678999999999998 56653   5789999999999984 5543 


Q ss_pred             cCCCCCCeEECCCCcCcccCCC
Q 009858          397 TRLTFLAVLNLSRNKLEGRIPE  418 (523)
Q Consensus       397 ~~l~~L~~L~Ls~N~l~~~~p~  418 (523)
                        +++|++|++++|+++ .+|.
T Consensus       323 --~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         323 --PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             --CTTCCEEECCSSCCS-SCCC
T ss_pred             --cCCCCEEECcCCcCC-CCCc
Confidence              467999999999987 5665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.1e-18  Score=155.81  Aligned_cols=203  Identities=21%  Similarity=0.276  Sum_probs=125.4

Q ss_pred             EEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCc
Q 009858          143 LDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNK  222 (523)
Q Consensus       143 L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  222 (523)
                      ++++.+++++..  .+..+. +|++|++.+|.++. ++ .+..+++|++|++++|.+++..  .+..+++|+++++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~-~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLD-GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHH-TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcC-CcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            344555554322  234444 56666666666653 22 3556666666666666665322  25566666666666666


Q ss_pred             CCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccc
Q 009858          223 MKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKY  302 (523)
Q Consensus       223 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~  302 (523)
                      ++. + ..+..+++|+.+.++++...+..+    ....+.+..+.++++.+....+   +                    
T Consensus        97 ~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~---~--------------------  147 (227)
T d1h6ua2          97 LKN-V-SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---L--------------------  147 (227)
T ss_dssp             CSC-C-GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---G--------------------
T ss_pred             ccc-c-ccccccccccccccccccccccch----hccccchhhhhchhhhhchhhh---h--------------------
Confidence            552 2 235566666666666665433221    1335666677776666542211   1                    


Q ss_pred             cCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEe
Q 009858          303 MGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLD  382 (523)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  382 (523)
                                            ..+++|+.|++++|.+.+..  .+.++++|+.|+|++|++++ ++. ++.+++|++|+
T Consensus       148 ----------------------~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~  201 (227)
T d1h6ua2         148 ----------------------AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVH  201 (227)
T ss_dssp             ----------------------GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred             ----------------------ccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEE
Confidence                                  11466777888888776332  26788889999999988874 443 78888999999


Q ss_pred             CCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858          383 LSSNVLDGVIPRELTRLTFLAVLNLSR  409 (523)
Q Consensus       383 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  409 (523)
                      |++|++++..  .+.++++|+.|++++
T Consensus       202 Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         202 LKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             CcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            9999888653  378888999988863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.9e-19  Score=161.31  Aligned_cols=221  Identities=14%  Similarity=0.096  Sum_probs=152.0

Q ss_pred             CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCC-CccccCCCCCcEEECC
Q 009858          141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSV-PRSLLNCANLQVLDLG  219 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~  219 (523)
                      +.++.++.+++ .+|..+.   +++++|++++|+++...+..|.++++|++|++++|.+...+ +..|.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            57788888887 7776543   37888888888888666667888888899998888876543 4567888888888875


Q ss_pred             C-CcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccc
Q 009858          220 N-NKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADEN  298 (523)
Q Consensus       220 ~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~  298 (523)
                      . |.+....+..|.++++|+.+++++|.+....+.. ....++.+..+...++.+. .++...+.++             
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~-~~~~l~~l~~~~~~n~~l~-~i~~~~~~~~-------------  151 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIH-TIERNSFVGL-------------  151 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT-TTCBSSCEEEEEESCTTCC-EECTTSSTTS-------------
T ss_pred             ccccccccccccccccccccccccchhhhccccccc-ccccccccccccccccccc-cccccccccc-------------
Confidence            4 5666666677888888999998888775433222 1233455555555655554 3332211110             


Q ss_pred             cccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCee-eCcCCcccccCCccccCCCC
Q 009858          299 KSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLL-NLSQNILSGNIPSSLGDLTD  377 (523)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~~  377 (523)
                                                  ...++.+++++|+++...+..+ ...++.++ .+++|+++...+..|.++++
T Consensus       152 ----------------------------~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~  202 (242)
T d1xwdc1         152 ----------------------------SFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASG  202 (242)
T ss_dssp             ----------------------------BSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCC
T ss_pred             ----------------------------cccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCC
Confidence                                        2356778888888884444444 44555444 67788888555567888999


Q ss_pred             CCEEeCCCCcCCCcCChhhcCCCCCCeEECCC
Q 009858          378 LESLDLSSNVLDGVIPRELTRLTFLAVLNLSR  409 (523)
Q Consensus       378 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  409 (523)
                      |++|+|++|+++...+..|.+++.|+.+++.+
T Consensus       203 L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         203 PVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99999999999877676777777777766543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=2.5e-17  Score=159.06  Aligned_cols=275  Identities=23%  Similarity=0.305  Sum_probs=155.0

Q ss_pred             CCccEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccC
Q 009858           93 KNLEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRK  172 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~  172 (523)
                      ++|++|+|++|+++ .+|..+.+|+.|++++|.++. ++. +  .+.|++|++++|.++ .+|. ++.+. +|++|++++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~-~L~~L~l~~  129 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSS-FLKIIDVDN  129 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CCS-C--CTTCCEEECCSSCCS-SCCC-CTTCT-TCCEEECCS
T ss_pred             CCCCEEECCCCCCc-ccccchhhhhhhhhhhcccch-hhh-h--ccccccccccccccc-cccc-hhhhc-cceeecccc
Confidence            56777777777777 345566777777777777662 221 1  135777777777776 5664 35555 677777777


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCC-------------------CchHhhhc
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKD-------------------TFPHWLGT  233 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-------------------~~~~~l~~  233 (523)
                      +.+... +..   ...+..+.+..+...  ....+..++.++.+++++|....                   .++ .+..
T Consensus       130 ~~~~~~-~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~  202 (353)
T d1jl5a_         130 NSLKKL-PDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQN  202 (353)
T ss_dssp             SCCSCC-CCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTT
T ss_pred             cccccc-ccc---cccccchhhcccccc--ccccccccccceecccccccccccccccccccccccccccccccc-cccc
Confidence            766532 221   233444444444332  12234445555555555443321                   122 3456


Q ss_pred             CCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccc-cccCccccccce
Q 009858          234 LRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKS-KYMGETYYEDSV  312 (523)
Q Consensus       234 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~~~~~~  312 (523)
                      ++.|+.+++++|..... +     ....++..+.+.++.+.. .+.. ..   .+............ ........  ..
T Consensus       203 l~~L~~l~l~~n~~~~~-~-----~~~~~l~~~~~~~~~~~~-~~~~-~~---~l~~~~~~~~~~~~l~~l~~~~~--~~  269 (353)
T d1jl5a_         203 LPFLTTIYADNNLLKTL-P-----DLPPSLEALNVRDNYLTD-LPEL-PQ---SLTFLDVSENIFSGLSELPPNLY--YL  269 (353)
T ss_dssp             CTTCCEEECCSSCCSSC-C-----SCCTTCCEEECCSSCCSC-CCCC-CT---TCCEEECCSSCCSEESCCCTTCC--EE
T ss_pred             ccccccccccccccccc-c-----cccccccccccccccccc-cccc-cc---cccccccccccccccccccchhc--cc
Confidence            78899999988875432 2     224567778888777652 2211 11   11111111100000 00000000  00


Q ss_pred             EEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcC
Q 009858          313 TLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVI  392 (523)
Q Consensus       313 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  392 (523)
                      .. ...........+++|++|+|++|+++ .+|.   .+++|+.|+|++|+++ .+|..   +++|++|+|++|+++ .+
T Consensus       270 ~~-~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~l  339 (353)
T d1jl5a_         270 NA-SSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EF  339 (353)
T ss_dssp             EC-CSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SC
T ss_pred             cc-ccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CC
Confidence            00 00000011122678999999999998 6664   3678999999999998 56653   568999999999998 45


Q ss_pred             ChhhcCCCCCCeEECC
Q 009858          393 PRELTRLTFLAVLNLS  408 (523)
Q Consensus       393 ~~~l~~l~~L~~L~Ls  408 (523)
                      |...   .+|+.|.+.
T Consensus       340 p~~~---~~L~~L~~~  352 (353)
T d1jl5a_         340 PDIP---ESVEDLRMN  352 (353)
T ss_dssp             CCCC---TTCCEEECC
T ss_pred             Cccc---cccCeeECc
Confidence            5532   357777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=7.8e-18  Score=152.03  Aligned_cols=190  Identities=24%  Similarity=0.344  Sum_probs=119.1

Q ss_pred             hhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCC
Q 009858          134 ICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANL  213 (523)
Q Consensus       134 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  213 (523)
                      +..+.+|+.|++.+|+++ .+ +.+..+. +|++|++++|.+++..|  +.++++|+++++++|.++. + ..+.++++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l-~~l~~l~-~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L  109 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVT-TI-EGVQYLN-NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSI  109 (227)
T ss_dssp             HHHHHTCCEEECTTSCCC-CC-TTGGGCT-TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred             HHHcCCcCEEECCCCCCC-cc-hhHhcCC-CCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccc
Confidence            344556666666666665 44 2455555 56666666666664333  5566666666666666652 2 245666777


Q ss_pred             cEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccc
Q 009858          214 QVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGE  293 (523)
Q Consensus       214 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~  293 (523)
                      +.++++++...+.  ..+...+.+..+.++.+.+....+    ...+++|++|++++|.+....+   +           
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~---l-----------  169 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---L-----------  169 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---G-----------
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhchhhh----hccccccccccccccccccchh---h-----------
Confidence            7777766665532  234556666777776665543221    2446677777777776652111   1           


Q ss_pred             ccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCcccc
Q 009858          294 AADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLG  373 (523)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  373 (523)
                                                     ..+++|+.|++++|++++ ++. +..+++|++|+|++|++++ ++. ++
T Consensus       170 -------------------------------~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~-l~  214 (227)
T d1h6ua2         170 -------------------------------ANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSP-LA  214 (227)
T ss_dssp             -------------------------------TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGG-GT
T ss_pred             -------------------------------cccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Ccc-cc
Confidence                                           125677888888888874 443 6788889999999998885 443 78


Q ss_pred             CCCCCCEEeCCC
Q 009858          374 DLTDLESLDLSS  385 (523)
Q Consensus       374 ~l~~L~~L~Ls~  385 (523)
                      ++++|+.|++++
T Consensus       215 ~l~~L~~L~lsn  226 (227)
T d1h6ua2         215 NTSNLFIVTLTN  226 (227)
T ss_dssp             TCTTCCEEEEEE
T ss_pred             cCCCCCEEEeeC
Confidence            888999988863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=4.9e-18  Score=148.93  Aligned_cols=173  Identities=20%  Similarity=0.237  Sum_probs=136.2

Q ss_pred             ccEEEccCCCCccCCCCCCCCCcEEEccCCcCCC-cCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCC
Q 009858           95 LEYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIG-EIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN  173 (523)
Q Consensus        95 L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n  173 (523)
                      .++++.++++++.++....+++++|+|++|.++. ..+..|.++++|+.|++++|.+....+..+..+. +|++|++++|
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSC
T ss_pred             CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc-ccceeeeccc
Confidence            4578999999986655557899999999999976 4467789999999999999999977777887787 8999999999


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCC
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      +++...|..|.++++|++|+|++|++++..+++|..+++|++|+|++|.+..... .++..  .++.+.+..+.+....|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~--~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhh--hhhhhcccCCCeEeCCC
Confidence            9998888899999999999999999998888899999999999999998875432 22221  24445555555543333


Q ss_pred             CccccccCCCCcEEeccCccCCC
Q 009858          253 DYEADYYFSKLRILDLSNNNFTG  275 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~  275 (523)
                      .     .+..++.++++.+.+..
T Consensus       167 ~-----~l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         167 S-----KVRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             T-----TTTTSBGGGSCTTTCCC
T ss_pred             h-----hhcCCEeeecCHhhCcC
Confidence            2     34566667777777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.5e-18  Score=153.45  Aligned_cols=219  Identities=14%  Similarity=0.071  Sum_probs=116.8

Q ss_pred             cEEEccCCCCccCCCCCCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEEEccC-C
Q 009858           96 EYLDLRSNLLQGPVPAPSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVLDLRK-N  173 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L~L~~-n  173 (523)
                      ++++.++..++..++...+++++|++++|.++...+.+|.++++|++|++++|.+.+.++. .+..+. .++++.+.. |
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~-~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT-TCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc-ccccccccccc
Confidence            4666666666643333345666666666666654555566666666666666666533332 233343 555555543 3


Q ss_pred             cccccCCCCCCCCCCCCEEECcCCCCCCCCCc-cccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCcCC
Q 009858          174 RFHGTIPETFPKGNNLTTLNFNGNELVGSVPR-SLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGHLR  252 (523)
Q Consensus       174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  252 (523)
                      .+....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....+..+..+                  
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~------------------  151 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL------------------  151 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS------------------
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccc------------------
Confidence            45544555555555666666655555422111 12223333333333333332222222211                  


Q ss_pred             CccccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhccc-c
Q 009858          253 DYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIF-T  331 (523)
Q Consensus       253 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~  331 (523)
                             ...++.|++++|.++ .++...+.                                           .+++ +
T Consensus       152 -------~~~l~~L~l~~n~l~-~i~~~~~~-------------------------------------------~~~l~~  180 (242)
T d1xwdc1         152 -------SFESVILWLNKNGIQ-EIHNCAFN-------------------------------------------GTQLDE  180 (242)
T ss_dssp             -------BSSCEEEECCSSCCC-EECTTTTT-------------------------------------------TCCEEE
T ss_pred             -------cccceeeeccccccc-cccccccc-------------------------------------------chhhhc
Confidence                   235666677766665 33322221                                           1222 3


Q ss_pred             cccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCC
Q 009858          332 TIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLS  384 (523)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  384 (523)
                      .+++++|+++...+..|.++++|++|+|++|+++...+..|.+++.|+.+++.
T Consensus       181 ~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            34567777874445567888899999999998885445556666666655543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.6e-17  Score=145.58  Aligned_cols=130  Identities=25%  Similarity=0.318  Sum_probs=78.8

Q ss_pred             CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccc-cCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858          141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHG-TIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG  219 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  219 (523)
                      ++++.++++++ .+|..+   ++++++|+|++|+|++ ..+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            35566666665 555543   2356666666666653 233445566666666666666665556666666666666666


Q ss_pred             CCcCCCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCC
Q 009858          220 NNKMKDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGS  276 (523)
Q Consensus       220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  276 (523)
                      +|++....+++|.++++|++|+|++|.+.+..+..+  ..+++|++|++++|.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccc
Confidence            666665555566666666666666666665555554  4466677777777766543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.1e-16  Score=142.13  Aligned_cols=179  Identities=27%  Similarity=0.361  Sum_probs=97.8

Q ss_pred             EccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcC
Q 009858          144 DLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKM  223 (523)
Q Consensus       144 ~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  223 (523)
                      .+..+.+++.++.  ..+. +|++|++++|.++.. + .+..+++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus        30 ~l~~~~~~~~~~~--~~L~-~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELN-SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HTTCSCTTSEECH--HHHH-TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             HhCcCccCCccCH--HHhc-CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccc
Confidence            4445555543332  2343 566677776666632 2 25566666666666666653 22 245666666666666666


Q ss_pred             CCCchHhhhcCCCCCeEEeccccccCcCCCccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccccccccc
Q 009858          224 KDTFPHWLGTLRELQVLILRSNKFYGHLRDYEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYM  303 (523)
Q Consensus       224 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~  303 (523)
                      ++ +| .+..+++|+.|++++|.+...    .....++                                          
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~~~----~~l~~l~------------------------------------------  134 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGISDI----NGLVHLP------------------------------------------  134 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCCC----GGGGGCT------------------------------------------
T ss_pred             cc-cc-ccccccccccccccccccccc----ccccccc------------------------------------------
Confidence            53 33 355555666666555543211    1112233                                          


Q ss_pred             CccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeC
Q 009858          304 GETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDL  383 (523)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  383 (523)
                                               .++.+++++|.+++.  ..+..+++|+++++++|++++ ++. +.++++|++|+|
T Consensus       135 -------------------------~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~L  185 (210)
T d1h6ta2         135 -------------------------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYL  185 (210)
T ss_dssp             -------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             -------------------------ccccccccccccccc--ccccccccccccccccccccc-ccc-ccCCCCCCEEEC
Confidence                                     444444445544421  224455666666776666663 322 566677777777


Q ss_pred             CCCcCCCcCChhhcCCCCCCeEECC
Q 009858          384 SSNVLDGVIPRELTRLTFLAVLNLS  408 (523)
Q Consensus       384 s~n~l~~~~~~~l~~l~~L~~L~Ls  408 (523)
                      ++|++++ ++ .+.++++|++|+|+
T Consensus       186 s~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         186 SKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            7777664 33 46667777777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.9e-16  Score=138.26  Aligned_cols=73  Identities=38%  Similarity=0.555  Sum_probs=45.4

Q ss_pred             hcccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeE
Q 009858          327 LTIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVL  405 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  405 (523)
                      +++|+.|++++|.+. .++ .+..+++|+.|++++|++++ ++ .++++++|++|++++|++++.  +.+.++++|++|
T Consensus       127 l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         127 LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             hhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            344555555555554 222 35566777777777777764 33 367777777777777777643  246677777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.4e-18  Score=171.38  Aligned_cols=190  Identities=19%  Similarity=0.159  Sum_probs=102.4

Q ss_pred             CCCcEEECCCCcCCCC-----chHhhhcCCCCCeEEeccccccCcCCCc--cccccCCCCcEEeccCccCCCCCchHH--
Q 009858          211 ANLQVLDLGNNKMKDT-----FPHWLGTLRELQVLILRSNKFYGHLRDY--EADYYFSKLRILDLSNNNFTGSLPAMF--  281 (523)
Q Consensus       211 ~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~--  281 (523)
                      +.++.+++++|.+...     .+........++.+++++|.+.......  ......+.++.+++++|.+.......+  
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            4455555555543211     1222334678999999999765332111  112457889999999998763222111  


Q ss_pred             --HhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCCccCcC----cchhhc-CcccC
Q 009858          282 --FKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGE----IPELMG-KLHSL  354 (523)
Q Consensus       282 --~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L  354 (523)
                        ......|+.+.+..+.......              ..........++|++|+|++|.+++.    ++..+. ..+.|
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~~~--------------~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L  371 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAACC--------------SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL  371 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGH--------------HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             cccccccccccccccccchhhhhh--------------hhcccccccccchhhhheeeecccCcccchhhhhhhcccCCC
Confidence              1122334444444332111000              00112233455677888888777642    223332 34567


Q ss_pred             CeeeCcCCccccc----CCccccCCCCCCEEeCCCCcCCCcCChhh----c-CCCCCCeEECCCCcCcc
Q 009858          355 RLLNLSQNILSGN----IPSSLGDLTDLESLDLSSNVLDGVIPREL----T-RLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       355 ~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~-~l~~L~~L~Ls~N~l~~  414 (523)
                      ++|+|++|.+++.    ++..+...++|++|+|++|++++.....+    . ....|+.|++.+|.+..
T Consensus       372 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            7888888877642    33345556778888888887765322222    2 23357788887777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7e-16  Score=135.75  Aligned_cols=147  Identities=22%  Similarity=0.277  Sum_probs=87.1

Q ss_pred             CCCccEEEccCCCCccCCCC-CCCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPA-PSSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      ++++++|+++++.++....- .+++|++|++++|.+++..+  +.++++|++|++++|.+. .++ .+..+. +|++|++
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~-~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLT-NLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCT-TCSEEEC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccc-ccccccc
Confidence            35677777777777653221 26666677776666664332  666666666666666665 444 255554 5666666


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccC
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      ++|.+...  ..+..+++|+.|++++|++.. + ..+..+++|+.|++.+|.+++. + .++++++|++|++++|++++
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC
Confidence            66665532  235566666666666666642 2 2455666666666666666542 2 25566666666666665543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.4e-16  Score=139.06  Aligned_cols=164  Identities=20%  Similarity=0.267  Sum_probs=111.5

Q ss_pred             CCCccEEEccCCCCccCCCCC-CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEc
Q 009858           92 WKNLEYLDLRSNLLQGPVPAP-SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDL  170 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L  170 (523)
                      +.+|+.|++++|.++...+-. +++|++|++++|.+++..  .+..+++|++|++++|+++ .+| .+..+. +|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLK-KLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCT-TCCEEEC
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-cccccc-ccccccc
Confidence            357788888888877644322 778888888888777533  3567778888888888777 455 466665 6888888


Q ss_pred             cCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEeccccccCc
Q 009858          171 RKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                      ++|.+.. + ..+..+++++.+++++|.+++  +..+..+++|+++++++|.+.+. + .+.++++|++|++++|.+.+.
T Consensus       120 ~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         120 EHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCBC
T ss_pred             ccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCCC
Confidence            7777663 2 246677777888887777753  23456677788888887777643 3 267777777777777776542


Q ss_pred             CCCccccccCCCCcEEeccC
Q 009858          251 LRDYEADYYFSKLRILDLSN  270 (523)
Q Consensus       251 ~~~~~~~~~l~~L~~L~l~~  270 (523)
                       +   ....+++|++|++++
T Consensus       194 -~---~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 -R---ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -G---GGTTCTTCSEEEEEE
T ss_pred             -h---hhcCCCCCCEEEccC
Confidence             2   125577777777753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-16  Score=149.02  Aligned_cols=185  Identities=19%  Similarity=0.173  Sum_probs=86.7

Q ss_pred             CCCCCEEECcCCCCCCC-CCccccCCCCCcEEECCCCcCCCCchHhhhcCCCCCeEEecccc-ccCcCCCccccccCCCC
Q 009858          186 GNNLTTLNFNGNELVGS-VPRSLLNCANLQVLDLGNNKMKDTFPHWLGTLRELQVLILRSNK-FYGHLRDYEADYYFSKL  263 (523)
Q Consensus       186 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L  263 (523)
                      ..+|++|+++++.++.. +...+..+++|++|++++|.+.+..+..++.+++|++|++++|. +++..- ......+++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l-~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL-QTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH-HHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccccc-chhhHHHHhc
Confidence            34566666666555422 22334555666666666666555555555566666666666543 211000 0001235566


Q ss_pred             cEEeccCcc-CCCCC-chHHHhccccccccccccccccccccCccccccceEEEecchhHHHHHhhcccccccCCCC-cc
Q 009858          264 RILDLSNNN-FTGSL-PAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKN-SF  340 (523)
Q Consensus       264 ~~L~l~~n~-l~~~~-p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l  340 (523)
                      ++|++++|. ++... ........+.|+.+++.++....               ...........+++|++|++++| .+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i---------------~~~~l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL---------------QKSDLSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS---------------CHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccccc---------------ccccccccccccccccccccccccCC
Confidence            666666542 22110 01111111233333322110000               00001112233566666666665 35


Q ss_pred             CcCcchhhcCcccCCeeeCcCC-cccccCCccccCCCCCCEEeCCCC
Q 009858          341 HGEIPELMGKLHSLRLLNLSQN-ILSGNIPSSLGDLTDLESLDLSSN  386 (523)
Q Consensus       341 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~n  386 (523)
                      ++.....+..+++|++|+|++| .+++.....++++++|++|++++|
T Consensus       189 td~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            5455555666666666666664 455444445566666666666666

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-17  Score=165.83  Aligned_cols=309  Identities=18%  Similarity=0.155  Sum_probs=181.9

Q ss_pred             CCccEEEccCCCCccCCC----CCCCCCcEEEccCCcCCC----cCchhhhCCCCcCEEEccCCcCCccChhhHhhc---
Q 009858           93 KNLEYLDLRSNLLQGPVP----APSSNMRVFLISNNKFIG----EIPRLICNTSTIEILDLSNNSLSGTIPECIGNF---  161 (523)
Q Consensus        93 ~~L~~L~L~~n~l~~~~~----~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l---  161 (523)
                      .+|++||++++++++...    ..++++++|+|++|.++.    .++.++..+++|++|||++|.++..-...+...   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            478999999999986432    228999999999999874    334567889999999999999873322333321   


Q ss_pred             -ccCCcEEEccCCccccc----CCCCCCCCCCCCEEECcCCCCCCCCCc-------------------------------
Q 009858          162 -SKSLRVLDLRKNRFHGT----IPETFPKGNNLTTLNFNGNELVGSVPR-------------------------------  205 (523)
Q Consensus       162 -~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~-------------------------------  205 (523)
                       ..+|++|++++|.+++.    ++..+..+++|++|++++|.+......                               
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence             22699999999999753    445677889999999999987421100                               


Q ss_pred             --cccCCCCCcEEECCCCcCCCC---------------------------------chHhhhcCCCCCeEEeccccccCc
Q 009858          206 --SLLNCANLQVLDLGNNKMKDT---------------------------------FPHWLGTLRELQVLILRSNKFYGH  250 (523)
Q Consensus       206 --~l~~l~~L~~L~L~~n~l~~~---------------------------------~~~~l~~l~~L~~L~l~~n~l~~~  250 (523)
                        .+.....++.++++++.....                                 ....+...+.++.+.+.+|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence              011234556666655543210                                 001122233344444444332110


Q ss_pred             CCC---ccccccCCCCcEEeccCccCCCCCchHH---HhccccccccccccccccccccCccccccceEEEecchhHHHH
Q 009858          251 LRD---YEADYYFSKLRILDLSNNNFTGSLPAMF---FKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM  324 (523)
Q Consensus       251 ~~~---~~~~~~l~~L~~L~l~~n~l~~~~p~~~---~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (523)
                      ...   .........++.+++++|.+........   +...+.+..++++.+......             .........
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~-------------~~~l~~~l~  308 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG-------------ARLLCETLL  308 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH-------------HHHHHHHHT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc-------------cchhhcccc
Confidence            000   0000123445555555555442211111   122223333333222110000             000000111


Q ss_pred             HhhcccccccCCCCccCcCcch----hhcCcccCCeeeCcCCccccc----CCcccc-CCCCCCEEeCCCCcCCCc----
Q 009858          325 KILTIFTTIDLSKNSFHGEIPE----LMGKLHSLRLLNLSQNILSGN----IPSSLG-DLTDLESLDLSSNVLDGV----  391 (523)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~Ls~n~l~~~----  391 (523)
                      .....|+.+++++|.++.....    .+...++|++|+|++|++++.    ++..+. ..+.|++|+|++|.+++.    
T Consensus       309 ~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~  388 (460)
T d1z7xw1         309 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS  388 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHH
Confidence            1245789999999988765433    334556899999999998753    223333 457799999999999853    


Q ss_pred             CChhhcCCCCCCeEECCCCcCcc
Q 009858          392 IPRELTRLTFLAVLNLSRNKLEG  414 (523)
Q Consensus       392 ~~~~l~~l~~L~~L~Ls~N~l~~  414 (523)
                      +++.+..+++|++|++++|+++.
T Consensus       389 l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         389 LAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHhcCCCCCEEECCCCcCCH
Confidence            34556778999999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-15  Score=142.30  Aligned_cols=252  Identities=18%  Similarity=0.196  Sum_probs=150.4

Q ss_pred             cEEEccCCCCccCCCCC--CCCCcEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChh-hHhhcccCCcEEEccC
Q 009858           96 EYLDLRSNLLQGPVPAP--SSNMRVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPE-CIGNFSKSLRVLDLRK  172 (523)
Q Consensus        96 ~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L~L~~  172 (523)
                      ++||++++.+.......  -..+..+.+........... .....+|++||+++|.+++.... .+..+. +|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~-~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHhccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCC-Ccccccccc
Confidence            46788887764322111  23345566665554432222 23456888899988887644333 344454 899999988


Q ss_pred             CcccccCCCCCCCCCCCCEEECcCC-CCCCC-CCccccCCCCCcEEECCCCc-CCCC-chHhhhc-CCCCCeEEecccc-
Q 009858          173 NRFHGTIPETFPKGNNLTTLNFNGN-ELVGS-VPRSLLNCANLQVLDLGNNK-MKDT-FPHWLGT-LRELQVLILRSNK-  246 (523)
Q Consensus       173 n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~~-l~~L~~L~l~~n~-  246 (523)
                      |.+.+..+..++.+++|++|++++| .++.. +...+.++++|++|++++|. ++.. +...+.. .++|+.|+++++. 
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            8887766667778888889988885 44421 12223567888888888864 3321 2233333 3678888887653 


Q ss_pred             -ccCcCCCccccccCCCCcEEeccCcc-CCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHH
Q 009858          247 -FYGHLRDYEADYYFSKLRILDLSNNN-FTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM  324 (523)
Q Consensus       247 -l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (523)
                       +....-. .....+++|++|++++|. +++....                                           .+
T Consensus       161 ~i~~~~l~-~l~~~~~~L~~L~L~~~~~itd~~~~-------------------------------------------~l  196 (284)
T d2astb2         161 NLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQ-------------------------------------------EF  196 (284)
T ss_dssp             GSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGG-------------------------------------------GG
T ss_pred             cccccccc-ccccccccccccccccccCCCchhhh-------------------------------------------hh
Confidence             2111000 011346788888888764 3321111                                           11


Q ss_pred             HhhcccccccCCCC-ccCcCcchhhcCcccCCeeeCcCCcccc-cCCccccCCCCCCEEeCCCCcCCCcCChhhc
Q 009858          325 KILTIFTTIDLSKN-SFHGEIPELMGKLHSLRLLNLSQNILSG-NIPSSLGDLTDLESLDLSSNVLDGVIPRELT  397 (523)
Q Consensus       325 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~  397 (523)
                      ..+++|++|++++| .+++.....+..+++|++|++++| +++ .++.....+|+|+   +..+++++..++.++
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~  267 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIG  267 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccC
Confidence            23678999999996 677666677888999999999988 332 2222223345544   455666655444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3.4e-14  Score=113.92  Aligned_cols=118  Identities=21%  Similarity=0.313  Sum_probs=76.7

Q ss_pred             cEEEccCCcCCCcCchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcC
Q 009858          117 RVFLISNNKFIGEIPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNG  196 (523)
Q Consensus       117 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  196 (523)
                      |+|++++|+++. ++ .+..+++|++|++++|.++ .+|..++.+. +|++|++++|.+++. | .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~-~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALR-CLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhh-ccccccccccccccc-C-ccccccccCeEECCC
Confidence            466777777763 33 3677777777788777777 6777777776 677777777777743 3 367777777777777


Q ss_pred             CCCCCCC-CccccCCCCCcEEECCCCcCCCC---chHhhhcCCCCCeE
Q 009858          197 NELVGSV-PRSLLNCANLQVLDLGNNKMKDT---FPHWLGTLRELQVL  240 (523)
Q Consensus       197 n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L  240 (523)
                      |++.... ...+..+++|++|++++|.+...   .......+++|+.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7776432 24566777777777777776522   22233345555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-14  Score=123.03  Aligned_cols=131  Identities=21%  Similarity=0.203  Sum_probs=96.0

Q ss_pred             hhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCC
Q 009858          133 LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCAN  212 (523)
Q Consensus       133 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  212 (523)
                      .|.+...+++|+|++|+|+ .+|..+..+. +|++|++++|.++.. + .|..+++|++|++++|+++...+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~-~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLD-QFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTT-CCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccc-cCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCccccccccc
Confidence            3567778889999999988 6776556666 799999999988844 3 5788889999999999988655556677889


Q ss_pred             CcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCCC-ccccccCCCCcEEe
Q 009858          213 LQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLRD-YEADYYFSKLRILD  267 (523)
Q Consensus       213 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~  267 (523)
                      |++|++++|.+..... ..+..+++|++|++++|++...... ......+|+|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999998874321 4577888888888888877543210 11124567777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.9e-15  Score=123.16  Aligned_cols=106  Identities=19%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             hhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCC-ccccCCC
Q 009858          133 LICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVP-RSLLNCA  211 (523)
Q Consensus       133 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~  211 (523)
                      .+..+++|+.|++++|.++ .++ .+..+. +|++|++++|+++...+..+..+++|++|++++|++..... ..+..++
T Consensus        36 ~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~-~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~  112 (162)
T d1a9na_          36 LGATLDQFDAIDFSDNEIR-KLD-GFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK  112 (162)
T ss_dssp             GGGGTTCCSEEECCSSCCC-EEC-CCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCT
T ss_pred             cccccccCCEEECCCCCCC-ccC-CcccCc-chhhhhcccccccCCCccccccccccccceecccccccccccccccccc
Confidence            3344555555555555554 332 234443 45555555555554333333445555555555555542211 2455566


Q ss_pred             CCcEEECCCCcCCCCc---hHhhhcCCCCCeEE
Q 009858          212 NLQVLDLGNNKMKDTF---PHWLGTLRELQVLI  241 (523)
Q Consensus       212 ~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~  241 (523)
                      +|++|++++|.+....   +..+..+++|+.|+
T Consensus       113 ~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         113 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666666666654221   22455666666664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=5.4e-14  Score=112.72  Aligned_cols=103  Identities=25%  Similarity=0.332  Sum_probs=73.3

Q ss_pred             CEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCC
Q 009858          141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGN  220 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  220 (523)
                      |+|+|++|+++ .++ .+..+. +|++|++++|+++ .+|..++.+++|++|++++|.+++ +| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~-~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCC-CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            56788888887 555 367776 6888888888887 456667777888888888887763 33 477778888888888


Q ss_pred             CcCCCCc-hHhhhcCCCCCeEEeccccccC
Q 009858          221 NKMKDTF-PHWLGTLRELQVLILRSNKFYG  249 (523)
Q Consensus       221 n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~  249 (523)
                      |++.... ...+..+++|+.|++++|++.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            8776432 2456677777777777777653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=4.3e-15  Score=142.73  Aligned_cols=192  Identities=17%  Similarity=0.160  Sum_probs=109.7

Q ss_pred             CCCCCCCEEECcCCCCCCCC----CccccCCCCCcEEECCCCcCCCCchH----h---------hhcCCCCCeEEecccc
Q 009858          184 PKGNNLTTLNFNGNELVGSV----PRSLLNCANLQVLDLGNNKMKDTFPH----W---------LGTLRELQVLILRSNK  246 (523)
Q Consensus       184 ~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~----~---------l~~l~~L~~L~l~~n~  246 (523)
                      ...++|++|++++|.+....    ...+...++|++|++++|.+......    .         ....+.|+.+.+++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            34456667777766665432    22334566777777777665321111    1         1234566677776665


Q ss_pred             ccCcCCCcc--ccccCCCCcEEeccCccCCCCCchHHHhccccccccccccccccccccCccccccceEEEecchhHHHH
Q 009858          247 FYGHLRDYE--ADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYMGETYYEDSVTLIIKRQEVKLM  324 (523)
Q Consensus       247 l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (523)
                      +.......+  .....+.|+.|++++|.+.......++                                      ...+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l--------------------------------------~~~l  211 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL--------------------------------------LEGL  211 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH--------------------------------------HTTG
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccch--------------------------------------hhhh
Confidence            532211111  112356677777777765421000000                                      0112


Q ss_pred             HhhcccccccCCCCccCcC----cchhhcCcccCCeeeCcCCcccccCCc----ccc--CCCCCCEEeCCCCcCCCc---
Q 009858          325 KILTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGNIPS----SLG--DLTDLESLDLSSNVLDGV---  391 (523)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~--~l~~L~~L~Ls~n~l~~~---  391 (523)
                      ...++|+.|+|++|.++..    +...+...++|++|+|++|.+++....    .+.  ..+.|++|++++|.++..   
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~  291 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  291 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHH
Confidence            2356788888888887543    334566778888899988888753222    222  236789999999988653   


Q ss_pred             -CChhhc-CCCCCCeEECCCCcCc
Q 009858          392 -IPRELT-RLTFLAVLNLSRNKLE  413 (523)
Q Consensus       392 -~~~~l~-~l~~L~~L~Ls~N~l~  413 (523)
                       +...+. +++.|+.|++++|.+.
T Consensus       292 ~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         292 TLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHccCCCCCEEECCCCcCC
Confidence             223332 5778999999999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.2e-14  Score=139.58  Aligned_cols=249  Identities=17%  Similarity=0.209  Sum_probs=122.8

Q ss_pred             CCCccEEEccCCCCccC-------CCCCCCCCcEEEccCCcCCCc----------CchhhhCCCCcCEEEccCCcCCccC
Q 009858           92 WKNLEYLDLRSNLLQGP-------VPAPSSNMRVFLISNNKFIGE----------IPRLICNTSTIEILDLSNNSLSGTI  154 (523)
Q Consensus        92 ~~~L~~L~L~~n~l~~~-------~~~~~~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~~  154 (523)
                      ...++.|+|++|.+...       .....++|+.|+++++.....          +...+..+++|+.|+|++|.++..-
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            46777777777766431       122256677777766543211          1123345566666676666665432


Q ss_pred             ----hhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECCCCcCCCC----
Q 009858          155 ----PECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLGNNKMKDT----  226 (523)
Q Consensus       155 ----p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----  226 (523)
                          ...+.... +|++|++++|.+.......++.  .+..+         .........+.|+.+++++|.+...    
T Consensus       110 ~~~l~~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1         110 QEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             HHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccchhhhhcccc-cchheecccccccccccccccc--ccccc---------ccccccccCcccceeeccccccccccccc
Confidence                22223333 5666666666553211000000  00000         0000012334555555555554321    


Q ss_pred             chHhhhcCCCCCeEEeccccccCcCCC---ccccccCCCCcEEeccCccCCCCCchHHHhcccccccccccccccccccc
Q 009858          227 FPHWLGTLRELQVLILRSNKFYGHLRD---YEADYYFSKLRILDLSNNNFTGSLPAMFFKNMKAMTDIGEAADENKSKYM  303 (523)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~l~~~~~~~~~~~~  303 (523)
                      +...+...+.|++|+++.|.+......   .......++|+.|++++|.++......+                      
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L----------------------  235 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL----------------------  235 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH----------------------
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc----------------------
Confidence            223344455666666666554321000   0011345667777777776542111010                      


Q ss_pred             CccccccceEEEecchhHHHHHhhcccccccCCCCccCcCcc----hhhcC--cccCCeeeCcCCcccccC----Ccccc
Q 009858          304 GETYYEDSVTLIIKRQEVKLMKILTIFTTIDLSKNSFHGEIP----ELMGK--LHSLRLLNLSQNILSGNI----PSSLG  373 (523)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~--l~~L~~L~Ls~n~l~~~~----p~~~~  373 (523)
                                       ...+...++|++|+|++|.+++...    ..+..  .+.|++|++++|+++...    ...+.
T Consensus       236 -----------------~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~  298 (344)
T d2ca6a1         236 -----------------AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID  298 (344)
T ss_dssp             -----------------HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred             -----------------cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHH
Confidence                             0112225667777777777764322    22222  356888888888876422    22332


Q ss_pred             -CCCCCCEEeCCCCcCCCc
Q 009858          374 -DLTDLESLDLSSNVLDGV  391 (523)
Q Consensus       374 -~l~~L~~L~Ls~n~l~~~  391 (523)
                       +.+.|++|+|++|.+...
T Consensus       299 ~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         299 EKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHCTTCCEEECTTSBSCTT
T ss_pred             ccCCCCCEEECCCCcCCCc
Confidence             467899999999988743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=2.7e-14  Score=124.89  Aligned_cols=132  Identities=24%  Similarity=0.360  Sum_probs=84.1

Q ss_pred             CchhhhCCCCcCEEEccCCcCCccChhhHhhcccCCcEEEccCCcccccCCCCCCCCCCCCEEECcCCCCCCCCCccccC
Q 009858          130 IPRLICNTSTIEILDLSNNSLSGTIPECIGNFSKSLRVLDLRKNRFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLN  209 (523)
Q Consensus       130 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  209 (523)
                      ++.++..+++|++|+|++|+|+ .++ .+..+. +|++|++++|.++ .+|..+..+++|++|++++|+++. + ..+..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~-~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHT-TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCc-cccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence            4456777777777777777776 554 466666 6777777777776 344333344567777777777763 2 34666


Q ss_pred             CCCCcEEECCCCcCCCCch-HhhhcCCCCCeEEeccccccCcCCCccc--------cccCCCCcEEe
Q 009858          210 CANLQVLDLGNNKMKDTFP-HWLGTLRELQVLILRSNKFYGHLRDYEA--------DYYFSKLRILD  267 (523)
Q Consensus       210 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~--------~~~l~~L~~L~  267 (523)
                      +++|++|++++|.++.... ..+..+++|+.|++++|++....+....        ...+|+|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7778888888877764321 4567777888888888776544333211        13456666664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.9e-12  Score=103.95  Aligned_cols=109  Identities=20%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             cccccCCCCccCcCcchhhcCcccCCeeeCcCC-cccccCCccccCCCCCCEEeCCCCcCCCcCChhhcCCCCCCeEECC
Q 009858          330 FTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQN-ILSGNIPSSLGDLTDLESLDLSSNVLDGVIPRELTRLTFLAVLNLS  408 (523)
Q Consensus       330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  408 (523)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345666777766 55666777777777777655 3665555667777778888888887777777777777778888888


Q ss_pred             CCcCcccCCCCCCCCcccCCccCCCCCCCCC
Q 009858          409 RNKLEGRIPEGNQFATFSSDSYGGNLGLCGF  439 (523)
Q Consensus       409 ~N~l~~~~p~~~~~~~~~~~~~~gn~~lc~~  439 (523)
                      +|+++...+.......+..+.+.||+.-|++
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCCCcccChhhhccccccccccCCCcccCCc
Confidence            8877733332222334555556666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=4.4e-13  Score=116.98  Aligned_cols=77  Identities=27%  Similarity=0.286  Sum_probs=39.3

Q ss_pred             cccccccCCCCccCcCcchhhcCcccCCeeeCcCCcccccCC-ccccCCCCCCEEeCCCCcCCCcCCh----------hh
Q 009858          328 TIFTTIDLSKNSFHGEIPELMGKLHSLRLLNLSQNILSGNIP-SSLGDLTDLESLDLSSNVLDGVIPR----------EL  396 (523)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~----------~l  396 (523)
                      +.|+.|++++|.++ .++ .+..+++|+.|++++|+++.... ..+..+++|+.|+|++|++....+.          .+
T Consensus        93 ~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_          93 DTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             cccccccccccccc-ccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHH
Confidence            34555555555555 222 24455556666666655553211 2355556666666666655432221          14


Q ss_pred             cCCCCCCeEE
Q 009858          397 TRLTFLAVLN  406 (523)
Q Consensus       397 ~~l~~L~~L~  406 (523)
                      ..+|+|+.||
T Consensus       171 ~~lp~L~~LD  180 (198)
T d1m9la_         171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCCEES
T ss_pred             HHCCCcCEeC
Confidence            5567777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2e-11  Score=101.71  Aligned_cols=82  Identities=13%  Similarity=0.086  Sum_probs=37.8

Q ss_pred             CEEEccCCcCCccChhhHhhcccCCcEEEccCC-cccccCCCCCCCCCCCCEEECcCCCCCCCCCccccCCCCCcEEECC
Q 009858          141 EILDLSNNSLSGTIPECIGNFSKSLRVLDLRKN-RFHGTIPETFPKGNNLTTLNFNGNELVGSVPRSLLNCANLQVLDLG  219 (523)
Q Consensus       141 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  219 (523)
                      ..++.++++++ ..|..+..+. +|++|++++| .++.+.+..|.++++|+.|++++|+++...+.+|..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34444444444 3444444443 4555555433 2443333444444455555555554444444444444444444444


Q ss_pred             CCcCC
Q 009858          220 NNKMK  224 (523)
Q Consensus       220 ~n~l~  224 (523)
                      +|++.
T Consensus        89 ~N~l~   93 (156)
T d2ifga3          89 FNALE   93 (156)
T ss_dssp             SSCCS
T ss_pred             CCCCc
Confidence            44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.3e-08  Score=84.89  Aligned_cols=16  Identities=44%  Similarity=0.493  Sum_probs=7.2

Q ss_pred             CCCCcCEEEccCCcCC
Q 009858          136 NTSTIEILDLSNNSLS  151 (523)
Q Consensus       136 ~l~~L~~L~L~~n~l~  151 (523)
                      .+++|++|+|++|+|+
T Consensus        63 ~~~~L~~L~Ls~N~i~   78 (162)
T d1koha1          63 NIPELLSLNLSNNRLY   78 (162)
T ss_dssp             HCTTCCCCCCCSSCCC
T ss_pred             hCCCCCEeeCCCcccc
Confidence            3444444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.6e-07  Score=76.79  Aligned_cols=82  Identities=24%  Similarity=0.212  Sum_probs=59.9

Q ss_pred             HhhcccccccCCCCccCcCc--chhhcCcccCCeeeCcCCcccccCCccccCCCCCCEEeCCCCcCCCcCCh-------h
Q 009858          325 KILTIFTTIDLSKNSFHGEI--PELMGKLHSLRLLNLSQNILSGNIPSSLGDLTDLESLDLSSNVLDGVIPR-------E  395 (523)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-------~  395 (523)
                      ..++.|++|+|++|+++...  +..+..+++|+.|+|++|.++...+..+.....|++|++++|.+......       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            45788999999999988532  34567788899999999998854333344456788999999988765442       2


Q ss_pred             hcCCCCCCeEE
Q 009858          396 LTRLTFLAVLN  406 (523)
Q Consensus       396 l~~l~~L~~L~  406 (523)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            56788888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.86  E-value=4.8e-06  Score=69.20  Aligned_cols=86  Identities=15%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             hcccccccCCCCccCcC----cchhhcCcccCCeeeCcCCccccc----CCccccCCCCCCEEeCCCCcCCCc-------
Q 009858          327 LTIFTTIDLSKNSFHGE----IPELMGKLHSLRLLNLSQNILSGN----IPSSLGDLTDLESLDLSSNVLDGV-------  391 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~-------  391 (523)
                      .+.|++|+|++|.++..    +...+...+.|++|+|++|.+.+.    +-.++...++|++|+|++|.+...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            45677777777777632    223444557788888888877753    223456667888999988865532       


Q ss_pred             CChhhcCCCCCCeEECCCCcC
Q 009858          392 IPRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       392 ~~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      +...+...++|+.|+++.+..
T Consensus       123 l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCccEeeCcCCCc
Confidence            334455678888888877654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=9.6e-06  Score=67.28  Aligned_cols=37  Identities=24%  Similarity=0.268  Sum_probs=16.7

Q ss_pred             CCCCEEECcCCCCCCC----CCccccCCCCCcEEECCCCcC
Q 009858          187 NNLTTLNFNGNELVGS----VPRSLLNCANLQVLDLGNNKM  223 (523)
Q Consensus       187 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  223 (523)
                      +.|++|++++|.++..    +...+...++|++|++++|.+
T Consensus        72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            3455555555544421    112334445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.12  E-value=6.7e-05  Score=61.92  Aligned_cols=86  Identities=21%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             hcccccccCCCCccCcCc----chhhcCcccCCeeeCcCCccccc----CCccccCCCCCCEEeC--CCCcCCC----cC
Q 009858          327 LTIFTTIDLSKNSFHGEI----PELMGKLHSLRLLNLSQNILSGN----IPSSLGDLTDLESLDL--SSNVLDG----VI  392 (523)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--s~n~l~~----~~  392 (523)
                      .+.|++|++++|.++...    ...+...++++.+++++|.+...    +...+...++|+.++|  ++|.+..    .+
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            345555555555554321    12233445666666666665432    2234555667776544  3455543    23


Q ss_pred             ChhhcCCCCCCeEECCCCcC
Q 009858          393 PRELTRLTFLAVLNLSRNKL  412 (523)
Q Consensus       393 ~~~l~~l~~L~~L~Ls~N~l  412 (523)
                      ...+...+.|+.|+++.+..
T Consensus       125 a~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCcCEEeCcCCCC
Confidence            34455667777777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.94  E-value=0.00012  Score=60.31  Aligned_cols=19  Identities=0%  Similarity=0.097  Sum_probs=11.4

Q ss_pred             hhhCCCCcCEEEccCCcCC
Q 009858          133 LICNTSTIEILDLSNNSLS  151 (523)
Q Consensus       133 ~~~~l~~L~~L~L~~n~l~  151 (523)
                      ++...++|++|++++|.++
T Consensus        41 al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCC
T ss_pred             HHhcCCccCeeeccCCccc
Confidence            3445566666666666655