Citrus Sinensis ID: 009859

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---

MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK

ccEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEccccccccccccccccccccccccccccccccEEEcccccEEEccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHcccccEEEccccccccccccccccccccHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHccccHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHcccccccEEEEEcccccccccccEEEEccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHcc

ccEEEHHHHcccccccccccccccEHHHHHHHHHHHHccccEEEccccccccccccEEEEcccEccccccEEHHccccccEEEEcccHHHHEEcccccHHHcHHHHHccccEHHcccccccccccEEEcccccEEEccHHHHHHHHHHHHHcccHHHEEEEEccHHcHHHHHHHHHHHHHcccccccccccccccccccccHEcEccccccHHHccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEcccccccEcHHHccccHHHHHHHHccccHHHHHHHHccccEEEEccHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHcccccEEEEEEccccccHHHcccccEEEEEccccccccccccEEEccccEEccccEEEcccccEEcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHEEccccccccHHHHHHHcccccccccccccccHccccccHHHcccHHHHHHHHHHHcc

MCVRFATEVagvqdlgmlgrgsgeEIGTYVEKLMTSelsgnvidicpvgaltskpfafkarnwelkgtetidvtdavgsniridsrgpevmrilprlnedineewisdktrfcydglksqrlndpmirgadgrfkavNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNrmgsnnvwcegtgaqsnadlrsgyimntsisglekadcfllvgtQPRVEAAMVNARIRKTVRannakvgyigpatdlnydhqhlgtgpkTLLEIAegrhpffsaisnaknpviIVGAglferkdkdAIFSTVEAIAKKgnvirpdwnGLNVLLLNAAQAAALdlglvpessnsieSAKFVYLmgaddvdleklpndafvvyqghhgdhgvyranvilpasafsekegtyentegctqqtlpavptvgdardDWKIIRALSEVagmrlpydtiggiRSRIrtvapnllhvderepatlgpslkpeiksemdltpfgsavenfYMTDSITRASKTMAQCSAMLLKK

mcvrfatevagvqdlgmlgrgsGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARnwelkgtetidvtdavgsniridsrgpevmrILPRLNEDINEEWISDKTRFCYDGLksqrlndpmirgADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKtvrannakvgyigpatdlnydHQHLGTGPKTLLEIAEGRHPFfsaisnaknPVIIVGAGLFERKDKDAIFSTVEAiakkgnvirpDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTyentegctqqtlpavptvgdarDDWKIIRALsevagmrlpydtiggirsRIRTVApnllhvderepatlgpslkpeiksEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK

MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNglnvlllnaaqaaaldlglvPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK

**VRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHV**************************SAVENFYMTD*******************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		523	2.2.26 [Sep-21-2011]
Q43644		738	NADH dehydrogenase [ubiqu	N/A	no	0.996	0.705	0.836	0.0
Q9FGI6		748	NADH dehydrogenase [ubiqu	yes	no	0.998	0.697	0.800	0.0
P15690		727	NADH-ubiquinone oxidoredu	yes	no	0.982	0.707	0.513	1e-149
P28331		727	NADH-ubiquinone oxidoredu	yes	no	0.984	0.708	0.508	1e-148
Q0MQG2		727	NADH-ubiquinone oxidoredu	yes	no	0.984	0.708	0.506	1e-148
P0CB68		727	NADH-ubiquinone oxidoredu	N/A	no	0.984	0.708	0.504	1e-147
Q0MQG1		727	NADH-ubiquinone oxidoredu	N/A	no	0.984	0.708	0.506	1e-147
Q4R6K9		727	NADH-ubiquinone oxidoredu	N/A	no	0.984	0.708	0.506	1e-147
P0CB67		727	NADH-ubiquinone oxidoredu	yes	no	0.984	0.708	0.502	1e-147
Q91VD9		727	NADH-ubiquinone oxidoredu	yes	no	0.982	0.707	0.503	1e-146

>sp\|Q43644\|NDUS1_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Solanum tuberosum PE=2 SV=1	Back alignment and function desciption

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/521 (83%), Positives = 477/521 (91%)

Query: 2   CVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR 61
           CVRFA+EVAGV+DLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR
Sbjct: 218 CVRFASEVAGVEDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR 277

Query: 62  NWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQR 121
           NWELKGTE+IDVTDAVGSNIRIDSRGPEVMR++PRLNEDINEEWISDKTRF YDGLK QR
Sbjct: 278 NWELKGTESIDVTDAVGSNIRIDSRGPEVMRVVPRLNEDINEEWISDKTRFFYDGLKRQR 337

Query: 122 LNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRM 181
           LNDPMIRGADGRF+AV+WRDALA+VAEVM Q KPEEIVG+AG+LSDAESMMALKD LN+M
Sbjct: 338 LNDPMIRGADGRFQAVSWRDALAIVAEVMHQIKPEEIVGVAGKLSDAESMMALKDLLNKM 397

Query: 182 GSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR 241
           GSNN++CEG G   NADLRSGYIMNTSISGLEKAD FLLVGTQPRVEAAMVNARI KTV+
Sbjct: 398 GSNNIFCEGNGMHPNADLRSGYIMNTSISGLEKADAFLLVGTQPRVEAAMVNARIHKTVK 457

Query: 242 ANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFER 301
           A NAKVGY+GPA D NYDH+HLGT P+TL+EIAEGRHPF SA+ NAKNPVIIVGAG+F+R
Sbjct: 458 ATNAKVGYVGPAADFNYDHEHLGTDPQTLVEIAEGRHPFSSALKNAKNPVIIVGAGVFDR 517

Query: 302 KDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYL 361
            DKDA+F+ V+ IAK  NV+RPDWNGLNVLLLNAAQ AALDLGLVPES   IESAKFVYL
Sbjct: 518 DDKDAVFAAVDTIAKNNNVVRPDWNGLNVLLLNAAQVAALDLGLVPESDKCIESAKFVYL 577

Query: 362 MGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPA 421
           MGADDV+L+KLP+DAFVVYQGHHGD GVYRANVILPASAF+EKEG YENTEGC Q TLPA
Sbjct: 578 MGADDVNLDKLPDDAFVVYQGHHGDRGVYRANVILPASAFTEKEGIYENTEGCAQITLPA 637

Query: 422 VPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLK 481
           VPTVGDARDDWKI+RALSEVAG+ LPYD++G IRSRI+TVAPNLL VDER+PAT   SL+
Sbjct: 638 VPTVGDARDDWKIVRALSEVAGVGLPYDSLGAIRSRIKTVAPNLLEVDERQPATFSTSLR 697

Query: 482 PEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK 522
           PE+  ++  TPF  AVENFYMTD+ITRASK MAQCSA+L K
Sbjct: 698 PEVSQKVSATPFTPAVENFYMTDAITRASKIMAQCSALLKK 738

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3

>sp\|Q9FGI6\|NDUS1_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2	Back alignment and function description

>sp\|P15690\|NDUS1_BOVIN NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1	Back alignment and function description

>sp\|P28331\|NDUS1_HUMAN NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3	Back alignment and function description

>sp\|Q0MQG2\|NDUS1_PANTR NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|P0CB68\|NDUS1_PONPY NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|Q0MQG1\|NDUS1_GORGO NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|Q4R6K9\|NDUS1_MACFA NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|P0CB67\|NDUS1_PONAB NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|Q91VD9\|NDUS1_MOUSE NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus GN=Ndufs1 PE=1 SV=2	Back alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		523
UNIPROTKB\|Q8W317		747	OSJNBa0014G15.3 "cDNA clone:J0	0.998	0.698	0.779	2.5e-223
TAIR\|locus:2169871		748	EMB1467 "AT5G37510" [Arabidops	0.998	0.697	0.770	3.8e-220
UNIPROTKB\|A8IVJ7		733	NUOS1 "NADH:ubiquinone oxidore	0.980	0.699	0.493	6e-135
UNIPROTKB\|P15690		727	NDUFS1 "NADH-ubiquinone oxidor	0.982	0.707	0.496	2.5e-129
UNIPROTKB\|B4DJ81		611	NDUFS1 "cDNA FLJ60586, highly	0.982	0.841	0.492	3.2e-129
UNIPROTKB\|P28331		727	NDUFS1 "NADH-ubiquinone oxidor	0.982	0.707	0.492	3.2e-129
UNIPROTKB\|F1SHD7		742	NDUFS1 "Uncharacterized protei	0.982	0.692	0.494	6.6e-129
UNIPROTKB\|Q0MQG2		727	NDUFS1 "NADH-ubiquinone oxidor	0.982	0.707	0.490	6.6e-129
UNIPROTKB\|P0CB68		727	NDUFS1 "NADH-ubiquinone oxidor	0.982	0.707	0.488	1.4e-128
UNIPROTKB\|Q0MQG1		727	NDUFS1 "NADH-ubiquinone oxidor	0.982	0.707	0.490	1.4e-128

UNIPROTKB\|Q8W317 OSJNBa0014G15.3 "cDNA clone:J023087M21, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 2156 (764.0 bits), Expect = 2.5e-223, P = 2.5e-223
 Identities = 407/522 (77%), Positives = 451/522 (86%)

Query:     2 CVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR 61
             CVRFA+EVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR
Sbjct:   226 CVRFASEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR 285

Query:    62 NWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQR 121
             NWELKGTETIDVTDAVGSNIR+DSRGPEVMRI+PRLNEDINEEWISDKTRFCYDGLK QR
Sbjct:   286 NWELKGTETIDVTDAVGSNIRVDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQR 345

Query:   122 LNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRM 181
             LNDPMIRG DGRFKAV WRDALAVVAEV+ Q KPEEI G+AG+LSDAESMMALKDF+N+M
Sbjct:   346 LNDPMIRGTDGRFKAVTWRDALAVVAEVLQQVKPEEITGVAGKLSDAESMMALKDFVNKM 405

Query:   182 GSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR 241
             GS+ V CEG G    ADLRS Y+MNTSI+GLEKAD FLLVGTQPRVEAAMVNARIRKTVR
Sbjct:   406 GSDKVLCEGNGPSPPADLRSNYLMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIRKTVR 465

Query:   242 ANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFER 301
             A  AKV YIGP TD NYDH+HLGTGP+TL+EIAEGRHPF S + +AKNPVII GAGLF+R
Sbjct:   466 ATQAKVAYIGPPTDFNYDHEHLGTGPQTLVEIAEGRHPFCSTLQSAKNPVIIAGAGLFDR 525

Query:   302 KDKDAIFSTVEAIAKKGNVIRPDWNXXXXXXXXXXXXXXXXXXXXPESSNSIESAKFVYL 361
             +D+DA+FST+E +AKK NV+RPDWN                       + SI+S KF+YL
Sbjct:   526 EDQDALFSTIETVAKKFNVVRPDWNGLNVLLLHAAQAAALDLGLVANPTESIKSTKFLYL 585

Query:   362 MGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPA 421
             MGADDVDL+K+P+DAFVVYQGHHGD  VYRANVILP+SAFSEKEGTYENTEGCTQ T+PA
Sbjct:   586 MGADDVDLDKVPDDAFVVYQGHHGDKAVYRANVILPSSAFSEKEGTYENTEGCTQWTIPA 645

Query:   422 VPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLK 481
             VPTVGDARDDWKI+RALSEVAG +LPYD++ G+R RI  VAPNL+HVDEREP T+   +K
Sbjct:   646 VPTVGDARDDWKILRALSEVAGAQLPYDSLSGVRDRISMVAPNLVHVDEREPCTISSEVK 705

Query:   482 PEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK 523
             P +K ++  TPF + VENFYMTD+ITRASK MAQCSA LLKK
Sbjct:   706 PPVKQQVSSTPFKTVVENFYMTDAITRASKIMAQCSATLLKK 747

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IBA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IBA

GO:0045333 "cellular respiration" evidence=IBA

TAIR\|locus:2169871 EMB1467 "AT5G37510" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A8IVJ7 NUOS1 "NADH:ubiquinone oxidoreductase 76 kDa subunit" [Chlamydomonas reinhardtii (taxid:3055)]	Back alignment and assigned GO terms

UNIPROTKB\|P15690 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B4DJ81 NDUFS1 "cDNA FLJ60586, highly similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial (EC 1.6.5.3)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P28331 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SHD7 NDUFS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0MQG2 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Pan troglodytes (taxid:9598)]	Back alignment and assigned GO terms

UNIPROTKB\|P0CB68 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Pongo pygmaeus (taxid:9600)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0MQG1 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91VD9	NDUS1_MOUSE	1, ., 6, ., 9, 9, ., 3	0.5037	0.9827	0.7070	yes	no
Q0MQG2	NDUS1_PANTR	1, ., 6, ., 9, 9, ., 3	0.5066	0.9847	0.7083	yes	no
Q43644	NDUS1_SOLTU	1, ., 6, ., 9, 9, ., 3	0.8368	0.9961	0.7059	N/A	no
Q9FGI6	NDUS1_ARATH	1, ., 6, ., 9, 9, ., 3	0.8007	0.9980	0.6978	yes	no
P28331	NDUS1_HUMAN	1, ., 6, ., 9, 9, ., 3	0.5085	0.9847	0.7083	yes	no
P0CB67	NDUS1_PONAB	1, ., 6, ., 9, 9, ., 3	0.5028	0.9847	0.7083	yes	no
P15690	NDUS1_BOVIN	1, ., 6, ., 9, 9, ., 3	0.5132	0.9827	0.7070	yes	no
Q66HF1	NDUS1_RAT	1, ., 6, ., 9, 9, ., 3	0.5066	0.9847	0.7083	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5.3	0.946
3rd Layer	1.6.99	0.963
3rd Layer	1.6.99.3	0.946
3rd Layer	1.6.5	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_IV3721	hypothetical protein (737 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0635000201	hypothetical protein (190 aa)	•	•	•	•	•	•	0.972
	estExt_fgenesh4_pm.C_LG_V0527	hypothetical protein (254 aa)	•	•	•	•	•	•	0.954
	estExt_Genewise1_v1.C_LG_II0234	hypothetical protein (254 aa)	•	•	•	•	•	•	0.953
	estExt_fgenesh4_pg.C_LG_X0463	hypothetical protein (485 aa)	•	•	•	•	•	•	0.948
	estExt_fgenesh4_pm.C_LG_IX0254	hypothetical protein (222 aa)	•	•	•	•	•	•	0.935
	fgenesh4_kg.C_LG_IV000054	hypothetical protein (222 aa)	•	•	•	•	•	•	0.924
	gw1.8947.1.1	Predicted protein (324 aa)	•	•		•	•	•	0.921
	gw1.5262.1.1	annotation not avaliable (234 aa)	•				•	•	0.868
	eugene3.00061644	SubName- Full=Putative uncharacterized protein; (214 aa)	•	•	•	•	•	•	0.834
	ndhE	NADH-plastoquinone oxidoreductase chain 4L ; NDH shuttles electrons from NAD(P)H-plastoquinone, [...] (101 aa)	•		•		•	•	0.832

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		523
PRK09130		687	PRK09130, PRK09130, NADH dehydrogenase subunit G;	0.0
cd02773		375	cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Na	0.0
TIGR01973		603	TIGR01973, NuoG, NADH-quinone oxidoreductase, chai	1e-168
COG1034		693	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone	1e-150
cd02768		386	cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG	1e-149
pfam00384		358	pfam00384, Molybdopterin, Molybdopterin oxidoreduc	1e-119
cd02774		366	cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_	7e-95
PRK09129		776	PRK09129, PRK09129, NADH dehydrogenase subunit G;	9e-90
cd00368		374	cd00368, Molybdopterin-Binding, Molybdopterin-Bind	1e-67
cd02772		414	cd02772, MopB_NDH-1_NuoG2, MopB_NDH-1_NuoG2: The s	6e-41
PRK07860		797	PRK07860, PRK07860, NADH dehydrogenase subunit G;	1e-37
PRK08166		791	PRK08166, PRK08166, NADH dehydrogenase subunit G;	1e-35
cd02771		472	cd02771, MopB_NDH-1_NuoG2-N7, MopB_NDH-1_NuoG2-N7:	1e-32
cd02753		512	cd02753, MopB_Formate-Dh-H, Formate dehydrogenase	3e-28
COG3383		978	COG3383, COG3383, Uncharacterized anaerobic dehydr	4e-18
TIGR01591		671	TIGR01591, Fdh-alpha, formate dehydrogenase, alpha	7e-17
pfam09326		48	pfam09326, DUF1982, Domain of unknown function (DU	7e-13
COG3383		978	COG3383, COG3383, Uncharacterized anaerobic dehydr	6e-11
cd02754		565	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reducta	8e-09
COG0243		765	COG0243, BisC, Anaerobic dehydrogenases, typically	3e-07
cd02754		565	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reducta	2e-05
cd02767		574	cd02767, MopB_ydeP, The MopB_ydeP CD includes a gr	2e-04
COG0243		765	COG0243, BisC, Anaerobic dehydrogenases, typically	3e-04
TIGR02512		374	TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, grou	3e-04
PRK08493		819	PRK08493, PRK08493, NADH dehydrogenase subunit G;	3e-04
PTZ00305		297	PTZ00305, PTZ00305, NADH:ubiquinone oxidoreductase	0.001
TIGR01701		743	TIGR01701, Fdhalpha-like, oxidoreductase alpha (mo	0.002
TIGR01706		830	TIGR01706, NAPA, periplasmic nitrate reductase, la	0.003

>gnl\|CDD\|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

 Score =  725 bits (1874), Expect = 0.0
 Identities = 262/529 (49%), Positives = 354/529 (66%), Gaps = 11/529 (2%)

Query: 2   CVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR 61
           CVRFATEVAGV +LG +GRG   EI TY+E+ +TSELSGNVID+CPVGALTSKP+AF AR
Sbjct: 153 CVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTAR 212

Query: 62  NWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQR 121
            WELK TE+IDV DAVGSNIR+D+RG EVMRILPR+NE++NEEWISDKTRF +DGLK QR
Sbjct: 213 PWELKKTESIDVMDAVGSNIRVDTRGREVMRILPRVNEEVNEEWISDKTRFSWDGLKRQR 272

Query: 122 LNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRM 181
           L+ P +R  +G+    +W +A A +A  +     E+I  IAG L+D ESM ALKD + ++
Sbjct: 273 LDRPYVRK-NGKLVPASWDEAFAAIAAKIKGTPGEKIAAIAGDLADVESMFALKDLMQKL 331

Query: 182 GSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR 241
           GS+N+ C   GA+ +  LR+ Y+ NT+I+G+E+AD  LL+G  PR EA ++NARIRK  R
Sbjct: 332 GSSNLDCRQDGAKLDPSLRASYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRWR 391

Query: 242 ANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFER 301
           A   K+  IG   DL Y +++LG GP TL ++A G+H F   +  AK P+IIVG G   R
Sbjct: 392 AGGFKIAVIGEQADLTYPYEYLGAGPDTLADLASGKHEFADVLKAAKRPMIIVGQGALAR 451

Query: 302 KDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSN-------SIE 354
            D  A+ +    +A+K   +R  WNG NVL   A++   LDLG VP              
Sbjct: 452 ADGAAVLALAAKLAEKVGAVRDGWNGFNVLHTAASRVGGLDLGFVPGEGGKDAAEMLESG 511

Query: 355 SAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGC 414
           +   +YL+GAD++D+ K  + AFV+YQGHHGD G +RA+VILP +A++EK GTY NTEG 
Sbjct: 512 ALDVLYLLGADEIDISKGKS-AFVIYQGHHGDRGAHRADVILPGAAYTEKSGTYVNTEGR 570

Query: 415 TQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPA 474
            Q    AV   G+A++DW I+RALS+V G  LPYD++  +R+++    P+   +D+  P+
Sbjct: 571 VQLANRAVFPPGEAKEDWAILRALSDVLGKTLPYDSLAQLRAKLAAAYPHFAAIDQITPS 630

Query: 475 TLGPSLKPEIKS--EMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLL 521
                L        ++   PF S V++FY+T+ I RAS TMA+CSA+  
Sbjct: 631 KDAKDLAALASKKGKLSKAPFTSPVKDFYLTNPIARASATMAECSALAS 679

Length = 687

>gnl\|CDD\|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

>gnl\|CDD\|233662 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>gnl\|CDD\|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|239169 cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)	Back alignment and domain information

>gnl\|CDD\|215888 pfam00384, Molybdopterin, Molybdopterin oxidoreductase	Back alignment and domain information

>gnl\|CDD\|239175 cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists	Back alignment and domain information

>gnl\|CDD\|236386 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|238218 cd00368, Molybdopterin-Binding, Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor	Back alignment and domain information

>gnl\|CDD\|239173 cd02772, MopB_NDH-1_NuoG2, MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria	Back alignment and domain information

>gnl\|CDD\|236118 PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|239172 cd02771, MopB_NDH-1_NuoG2-N7, MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria	Back alignment and domain information

>gnl\|CDD\|239154 cd02753, MopB_Formate-Dh-H, Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons	Back alignment and domain information

>gnl\|CDD\|225918 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|130652 TIGR01591, Fdh-alpha, formate dehydrogenase, alpha subunit, archaeal-type	Back alignment and domain information

>gnl\|CDD\|204199 pfam09326, DUF1982, Domain of unknown function (DUF1982)	Back alignment and domain information

>gnl\|CDD\|225918 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|239155 cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	Back alignment and domain information

>gnl\|CDD\|223321 COG0243, BisC, Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|239155 cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	Back alignment and domain information

>gnl\|CDD\|239168 cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	Back alignment and domain information

>gnl\|CDD\|223321 COG0243, BisC, Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A	Back alignment and domain information

>gnl\|CDD\|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|140326 PTZ00305, PTZ00305, NADH:ubiquinone oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|233538 TIGR01701, Fdhalpha-like, oxidoreductase alpha (molybdopterin) subunit	Back alignment and domain information

>gnl\|CDD\|130767 TIGR01706, NAPA, periplasmic nitrate reductase, large subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		523
PRK09130		687	NADH dehydrogenase subunit G; Validated	100.0
KOG2282		708	consensus NADH-ubiquinone oxidoreductase, NDUFS1/7	100.0
COG3383		978	Uncharacterized anaerobic dehydrogenase [General f	100.0
TIGR01973		603	NuoG NADH-quinone oxidoreductase, chain G. This mo	100.0
PRK09129		776	NADH dehydrogenase subunit G; Validated	100.0
PRK07860		797	NADH dehydrogenase subunit G; Validated	100.0
PRK08166		847	NADH dehydrogenase subunit G; Validated	100.0
COG1034		693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	100.0
cd02773		375	MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The s	100.0
cd02774		366	MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: M	100.0
cd02752		649	MopB_Formate-Dh-Na-like Formate dehydrogenase N, a	100.0
cd02754		565	MopB_Nitrate-R-NapA-like Nitrate reductases, NapA	100.0
cd02753		512	MopB_Formate-Dh-H Formate dehydrogenase H (Formate	100.0
TIGR03479		912	DMSO_red_II_alp DMSO reductase family type II enzy	100.0
TIGR01553		1009	formate-DH-alph formate dehydrogenase, alpha subun	100.0
TIGR01591		671	Fdh-alpha formate dehydrogenase, alpha subunit, ar	100.0
cd02766		501	MopB_3 The MopB_3 CD includes a group of related u	100.0
cd02771		472	MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The secon	100.0
cd02768		386	MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo	100.0
cd02750		461	MopB_Nitrate-R-NarG-like Respiratory nitrate reduc	100.0
cd02772		414	MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second doma	100.0
cd02759		477	MopB_Acetylene-hydratase The MopB_Acetylene-hydrat	100.0
cd02762		539	MopB_1 The MopB_1 CD includes a group of related u	100.0
cd02755		454	MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik	100.0
TIGR01706		830	NAPA periplasmic nitrate reductase, large subunit.	100.0
PRK13532		830	nitrate reductase catalytic subunit; Provisional	100.0
cd02763		679	MopB_2 The MopB_2 CD includes a group of related u	100.0
cd02770		617	MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the D	100.0
cd02764		524	MopB_PHLH The MopB_PHLH CD includes a group of rel	100.0
cd00368		374	Molybdopterin-Binding Molybdopterin-Binding (MopB)	100.0
PRK15488		759	thiosulfate reductase PhsA; Provisional	100.0
cd02765		567	MopB_4 The MopB_4 CD includes a group of related u	100.0
cd02757		523	MopB_Arsenate-R This CD includes the respiratory a	100.0
cd02751		609	MopB_DMSOR-like The MopB_DMSOR-like CD contains di	100.0
cd02756		676	MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) ox	100.0
cd02758		735	MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD	100.0
TIGR02166		797	dmsA_ynfE anaerobic dimethyl sulfoxide reductase,	100.0
PRK08493		819	NADH dehydrogenase subunit G; Validated	100.0
cd02760		760	MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA	100.0
PRK14990		814	anaerobic dimethyl sulfoxide reductase subunit A;	100.0
cd02769		609	MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD	100.0
COG0243		765	BisC Anaerobic dehydrogenases, typically selenocys	100.0
TIGR02693		806	arsenite_ox_L arsenite oxidase, large subunit. Thi	100.0
TIGR03129		421	one_C_dehyd_B formylmethanofuran dehydrogenase sub	100.0
PRK09939		759	putative oxidoreductase; Provisional	100.0
TIGR01701		743	Fdhalpha-like oxidoreductase alpha (molybdopterin)	100.0
PRK14991		1031	tetrathionate reductase subunit A; Provisional	100.0
cd02761		415	MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the	100.0
TIGR00509		770	bisC_fam molybdopterin guanine dinucleotide-contai	100.0
TIGR02164		822	torA trimethylamine-N-oxide reductase TorA. This v	100.0
cd02767		574	MopB_ydeP The MopB_ydeP CD includes a group of rel	100.0
PRK15102		825	trimethylamine N-oxide reductase I catalytic subun	100.0
TIGR01580		1235	narG respiratory nitrate reductase, alpha subunit.	100.0
PF00384		432	Molybdopterin: Molybdopterin oxidoreductase; Inter	100.0
COG1029		429	FwdB Formylmethanofuran dehydrogenase subunit B [E	100.0
COG5013		1227	NarG Nitrate reductase alpha subunit [Energy produ	99.96
PF04879		55	Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4	99.52
PTZ00305		297	NADH:ubiquinone oxidoreductase; Provisional	99.44
PF09326		49	DUF1982: Domain of unknown function (DUF1982); Int	98.66
PRK07569		234	bidirectional hydrogenase complex protein HoxU; Va	98.14
PRK05113		191	electron transport complex protein RnfB; Provision	97.35
PF12798		15	Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450	96.84
COG1029		429	FwdB Formylmethanofuran dehydrogenase subunit B [E	96.49
TIGR02512		374	Fe_only_hydrog hydrogenases, Fe-only. This model d	96.14
COG1143		172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	95.94
COG3862		117	Uncharacterized protein with conserved CXXC pairs	95.86
PF00037		24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	95.47
PF12838		52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	95.04
PF13187		55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	95.02
PLN00071		81	photosystem I subunit VII; Provisional	94.63
COG2221		317	DsrA Dissimilatory sulfite reductase (desulfovirid	94.55
TIGR00403		183	ndhI NADH-plastoquinone oxidoreductase subunit I p	94.45
TIGR00315		162	cdhB CO dehydrogenase/acetyl-CoA synthase complex,	94.3
TIGR00402		101	napF ferredoxin-type protein NapF. The gene codes	94.27
TIGR03048		80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	94.15
PRK05888		164	NADH dehydrogenase subunit I; Provisional	94.07
PRK06991		270	ferredoxin; Provisional	93.89
PRK00945		171	acetyl-CoA decarbonylase/synthase complex subunit	93.76
PRK10194		163	ferredoxin-type protein; Provisional	93.73
PF12837		24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	93.26
PRK02651		81	photosystem I subunit VII; Provisional	93.21
PF14697		59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	93.19
KOG3256		212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	92.88
TIGR01971		122	NuoI NADH-quinone oxidoreductase, chain I. This mo	92.82
CHL00014		167	ndhI NADH dehydrogenase subunit I	92.48
PRK08348		120	NADH-plastoquinone oxidoreductase subunit; Provisi	92.1
PF13484		67	Fer4_16: 4Fe-4S double cluster binding domain	92.08
PF12838		52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	91.83
TIGR02912		314	sulfite_red_C sulfite reductase, subunit C. Member	91.57
TIGR02176		1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	90.47
PRK09476		254	napG quinol dehydrogenase periplasmic component; P	90.16
CHL00065		81	psaC photosystem I subunit VII	89.11
TIGR00397		213	mauM_napG MauM/NapG family ferredoxin-type protein	88.92
TIGR02936		91	fdxN_nitrog ferredoxin III, nif-specific. Members	88.91
PRK09853		1019	putative selenate reductase subunit YgfK; Provisio	88.71
TIGR03224		411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	88.59
PRK08318		420	dihydropyrimidine dehydrogenase subunit B; Validat	88.06
PRK06273		165	ferredoxin; Provisional	87.85
PRK12387		180	formate hydrogenlyase complex iron-sulfur subunit;	87.79
PRK08222		181	hydrogenase 4 subunit H; Validated	86.69
PRK09626		103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	85.99
TIGR00315		162	cdhB CO dehydrogenase/acetyl-CoA synthase complex,	85.95
PRK13984		604	putative oxidoreductase; Provisional	85.9
PF13187		55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	85.12
PRK07418		616	acetolactate synthase 3 catalytic subunit; Reviewe	84.87
PRK12769		654	putative oxidoreductase Fe-S binding subunit; Revi	84.69
PRK08322		547	acetolactate synthase; Reviewed	84.61
PRK09477		271	napH quinol dehydrogenase membrane component; Prov	84.43
COG0028		550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	84.41
TIGR03129		421	one_C_dehyd_B formylmethanofuran dehydrogenase sub	84.29
cd02761		415	MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the	84.14
TIGR02486		314	RDH reductive dehalogenase. This model represents	83.45
PRK06965		587	acetolactate synthase 3 catalytic subunit; Validat	83.41
PRK00945		171	acetyl-CoA decarbonylase/synthase complex subunit	83.16
TIGR01971		122	NuoI NADH-quinone oxidoreductase, chain I. This mo	82.89
TIGR03048		80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	82.84
PRK09107		595	acetolactate synthase 3 catalytic subunit; Validat	82.79
PRK02651		81	photosystem I subunit VII; Provisional	82.25
COG1145		99	NapF Ferredoxin [Energy production and conversion]	82.01
PRK09624		105	porD pyuvate ferredoxin oxidoreductase subunit del	81.79
cd02752		649	MopB_Formate-Dh-Na-like Formate dehydrogenase N, a	81.63
COG1146		68	Ferredoxin [Energy production and conversion]	81.62
PRK07979		574	acetolactate synthase 3 catalytic subunit; Validat	81.45
PRK08764		135	ferredoxin; Provisional	81.43
TIGR01944		165	rnfB electron transport complex, RnfABCDGE type, B	81.07
PRK09623		105	vorD 2-ketoisovalerate ferredoxin oxidoreductase s	80.93
TIGR00276		282	iron-sulfur cluster binding protein, putative. Thi	80.81
PRK06048		561	acetolactate synthase 3 catalytic subunit; Reviewe	80.62
CHL00099		585	ilvB acetohydroxyacid synthase large subunit	80.61
PLN02470		585	acetolactate synthase	80.59

>PRK09130 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

Probab=100.00  E-value=3.6e-114  Score=940.01  Aligned_cols=520  Identities=51%  Similarity=0.871  Sum_probs=471.6

Q ss_pred             CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859            1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN   80 (523)
Q Consensus         1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~   80 (523)
                      ||||||+||+|..+||+++||.+++|+||.+++++|++||||||||||||||+|||+|++||||+++++|+|++|++||+
T Consensus       152 rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~~~~~~r~w~l~~~~sic~~c~vGC~  231 (687)
T PRK09130        152 RCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSN  231 (687)
T ss_pred             HHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccccccccCcceeeeccccCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEEE
Q 009859           81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVG  160 (523)
Q Consensus        81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~  160 (523)
                      |.|++|+|+|+||+|++++++|++|||+||||+|++++++||++||+|+ +|+|+++||||||+.|+++|+++.++++++
T Consensus       232 i~v~~r~~~V~ri~pr~n~~vN~g~iC~KgRf~~d~l~~~RL~~PliR~-~G~~~~iSWdEAl~~iA~kL~~~~~~~ia~  310 (687)
T PRK09130        232 IRVDTRGREVMRILPRVNEEVNEEWISDKTRFSWDGLKRQRLDRPYVRK-NGKLVPASWDEAFAAIAAKIKGTPGEKIAA  310 (687)
T ss_pred             eEEEEeCCEEEEEeCCCCCCCCCcccccccccccccccccccCCccEec-CCceeecCHHHHHHHHHHHHHhcCCCeEEE
Confidence            9999999999999999999999999999999999999999999999998 899999999999999999999998889999


Q ss_pred             EeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHH
Q 009859          161 IAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTV  240 (523)
Q Consensus       161 ~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~  240 (523)
                      ++|+..++|+++++++|++.+|++|+++......+.......+.++.++.|+++||+||+||+||++++|+++.|+|+++
T Consensus       311 i~g~~~~~E~~~~lkkl~~~lGs~nid~~~~~~~~~~~~~~~~~~~~si~dIe~AD~IlliG~Np~~eaPvl~~rirka~  390 (687)
T PRK09130        311 IAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRW  390 (687)
T ss_pred             EECCCCCHHHHHHHHHHHHHcCCCccccccchhhhhhhhhccCCCCCCHHHHHhCCEEEEEccCcccccHHHHHHHHHHH
Confidence            99999999999999999999999998865432111111233445677899999999999999999999999999999998


Q ss_pred             HhCCCeEEEEcCCCCCCcchhccCCCHHHHHHHHcCcHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCC
Q 009859          241 RANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV  320 (523)
Q Consensus       241 ~~~g~klv~idp~~~~t~~~a~~g~~~~~l~~~~~gi~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~  320 (523)
                      +++++||++|||+.+.|+..+++|+++..+.+++.|.+++|+.|+++++++|++|.|+.++.+|..++.++.+|+.++|+
T Consensus       391 ~~g~~kIivIdpr~~~t~~~~~lg~~~~~l~~l~~g~~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G~  470 (687)
T PRK09130        391 RAGGFKIAVIGEQADLTYPYEYLGAGPDTLADLASGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGA  470 (687)
T ss_pred             HcCCCeEEEEcCccccCccccccCCCHHHHHHHHHhHHHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhCC
Confidence            74446999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeecchhhHHhhHHhcCCCCCccc-------cccCccEEEEEcCCCCCCCCCCCCceEEEEcccCCcccCcce
Q 009859          321 IRPDWNGLNVLLLNAAQAAALDLGLVPESSN-------SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRAN  393 (523)
Q Consensus       321 ~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~-------~~~~i~~l~~~g~n~~~~~~l~~~~fvV~~d~~~t~ta~~AD  393 (523)
                      ++++|+|+++++..+|.+|+.++|+.|....       ..+++|++|++|+||+....+ +.+|+|+||+|+|+|+++||
T Consensus       471 ~~~~~~G~~~L~~~an~~ga~dlG~~p~~~g~~~~~ll~~g~ik~l~llgadp~~~~~~-~~~fvV~qd~~~t~ta~~AD  549 (687)
T PRK09130        471 VRDGWNGFNVLHTAASRVGGLDLGFVPGEGGKDAAEMLESGALDVLYLLGADEIDISKG-KSAFVIYQGHHGDRGAHRAD  549 (687)
T ss_pred             ccCCCCCeEecCCchHHHHHHHhcCCCCcccccHHHHHhCCCcCEEEEecCChhhcccc-cCCEEEEecccCCccHhhCC
Confidence            9999999999999999999999998875421       258899999999999854333 24699999999999999999


Q ss_pred             EEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCC
Q 009859          394 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREP  473 (523)
Q Consensus       394 vvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~  473 (523)
                      ||||+++|+|++|+|+|+|||+|+++++++|+|++|+||+||++|+++||.+++|++.+++++++.+..|.|..++.+++
T Consensus       550 VVLP~a~~~Ek~Gt~~n~egrvq~~~~av~p~gear~dw~Il~~La~~lg~~~~~~~~~~l~~~l~~~~p~~~~i~~~~~  629 (687)
T PRK09130        550 VILPGAAYTEKSGTYVNTEGRVQLANRAVFPPGEAKEDWAILRALSDVLGKTLPYDSLAQLRAKLAAAYPHFAAIDQITP  629 (687)
T ss_pred             EEEcCCCccccCCeEECCCCceEEeccccCCCcccchHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCccccCccccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988887776


Q ss_pred             CCCCCCC--CcccccccCCCCcccccccccCCchhhhccHHHHHHHHHHhc
Q 009859          474 ATLGPSL--KPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK  522 (523)
Q Consensus       474 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~d~~~r~s~~~~~~~~~~~~  522 (523)
                      ..+....  ...........+|.+.+.|||+||+|+|+|++|++|+++..+
T Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~t~~i~r~s~~m~~~~~~~~~  680 (687)
T PRK09130        630 SKDAKDLAALASKKGKLSKAPFTSPVKDFYLTNPIARASATMAECSALASG  680 (687)
T ss_pred             ccchhhhhhhhcccccccccccccccccceeccHHHHhhHHHHHHHHHHHh
Confidence            5431100  000011234457889999999999999999999999998754

>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]	Back alignment and domain information

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>PRK09129 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>PRK07860 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>PRK08166 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists	Back alignment and domain information

>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E	Back alignment and domain information

>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	Back alignment and domain information

>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons	Back alignment and domain information

>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit	Back alignment and domain information

>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type	Back alignment and domain information

>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type	Back alignment and domain information

>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria	Back alignment and domain information

>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)	Back alignment and domain information

>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins	Back alignment and domain information

>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria	Back alignment and domain information

>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins	Back alignment and domain information

>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins	Back alignment and domain information

>TIGR01706 NAPA periplasmic nitrate reductase, large subunit	Back alignment and domain information

>PRK13532 nitrate reductase catalytic subunit; Provisional	Back alignment and domain information

>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes	Back alignment and domain information

>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins	Back alignment and domain information

>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor	Back alignment and domain information

>PRK15488 thiosulfate reductase PhsA; Provisional	Back alignment and domain information

>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins	Back alignment and domain information

>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins	Back alignment and domain information

>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin	Back alignment and domain information

>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins	Back alignment and domain information

>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	Back alignment and domain information

>PRK08493 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins	Back alignment and domain information

>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional	Back alignment and domain information

>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins	Back alignment and domain information

>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]	Back alignment and domain information

>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit	Back alignment and domain information

>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B	Back alignment and domain information

>PRK09939 putative oxidoreductase; Provisional	Back alignment and domain information

>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit	Back alignment and domain information

>PRK14991 tetrathionate reductase subunit A; Provisional	Back alignment and domain information

>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins	Back alignment and domain information

>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases	Back alignment and domain information

>TIGR02164 torA trimethylamine-N-oxide reductase TorA	Back alignment and domain information

>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	Back alignment and domain information

>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional	Back alignment and domain information

>TIGR01580 narG respiratory nitrate reductase, alpha subunit	Back alignment and domain information

>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit	Back alignment and domain information

>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]	Back alignment and domain information

>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]	Back alignment and domain information

>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain []	Back alignment and domain information

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional	Back alignment and domain information

>PF09326 DUF1982: Domain of unknown function (DUF1982); InterPro: IPR015405 This C-terminal domain is functionally uncharacterised and is found in various prokaryotic NADH dehydrogenases including NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated	Back alignment and domain information

>PRK05113 electron transport complex protein RnfB; Provisional	Back alignment and domain information

>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]	Back alignment and domain information

>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only	Back alignment and domain information

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	Back alignment and domain information

>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]	Back alignment and domain information

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J	Back alignment and domain information

>PLN00071 photosystem I subunit VII; Provisional	Back alignment and domain information

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein	Back alignment and domain information

>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit	Back alignment and domain information

>TIGR00402 napF ferredoxin-type protein NapF	Back alignment and domain information

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC	Back alignment and domain information

>PRK05888 NADH dehydrogenase subunit I; Provisional	Back alignment and domain information

>PRK06991 ferredoxin; Provisional	Back alignment and domain information

>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional	Back alignment and domain information

>PRK10194 ferredoxin-type protein; Provisional	Back alignment and domain information

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PRK02651 photosystem I subunit VII; Provisional	Back alignment and domain information

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B	Back alignment and domain information

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]	Back alignment and domain information

>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I	Back alignment and domain information

>CHL00014 ndhI NADH dehydrogenase subunit I	Back alignment and domain information

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional	Back alignment and domain information

>PF13484 Fer4_16: 4Fe-4S double cluster binding domain	Back alignment and domain information

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>TIGR02912 sulfite_red_C sulfite reductase, subunit C	Back alignment and domain information

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	Back alignment and domain information

>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional	Back alignment and domain information

>CHL00065 psaC photosystem I subunit VII	Back alignment and domain information

>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein	Back alignment and domain information

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific	Back alignment and domain information

>PRK09853 putative selenate reductase subunit YgfK; Provisional	Back alignment and domain information

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein	Back alignment and domain information

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated	Back alignment and domain information

>PRK06273 ferredoxin; Provisional	Back alignment and domain information

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK08222 hydrogenase 4 subunit H; Validated	Back alignment and domain information

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed	Back alignment and domain information

>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit	Back alignment and domain information

>PRK13984 putative oxidoreductase; Provisional	Back alignment and domain information

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J	Back alignment and domain information

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed	Back alignment and domain information

>PRK08322 acetolactate synthase; Reviewed	Back alignment and domain information

>PRK09477 napH quinol dehydrogenase membrane component; Provisional	Back alignment and domain information

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B	Back alignment and domain information

>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins	Back alignment and domain information

>TIGR02486 RDH reductive dehalogenase	Back alignment and domain information

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional	Back alignment and domain information

>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I	Back alignment and domain information

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC	Back alignment and domain information

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK02651 photosystem I subunit VII; Provisional	Back alignment and domain information

>COG1145 NapF Ferredoxin [Energy production and conversion]	Back alignment and domain information

>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E	Back alignment and domain information

>COG1146 Ferredoxin [Energy production and conversion]	Back alignment and domain information

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK08764 ferredoxin; Provisional	Back alignment and domain information

>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit	Back alignment and domain information

>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>TIGR00276 iron-sulfur cluster binding protein, putative	Back alignment and domain information

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>CHL00099 ilvB acetohydroxyacid synthase large subunit	Back alignment and domain information

>PLN02470 acetolactate synthase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		523
2fug_3		783	Crystal Structure Of The Hydrophilic Domain Of Resp		3e-28
2iv2_X		715	Reinterpretation Of Reduced Form Of Formate Dehydro		3e-04

>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 783

Back alignment and structure

Iteration: 1

Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 128/485 (26%), Positives = 189/485 (38%), Gaps = 55/485 (11%) Query: 2 CVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR 61 CVR+ EV G + L + RG IGT ++ + S SGN+ DICPVGAL F+AR Sbjct: 187 CVRYFEEVPGDEVLDFIERGVHTFIGT-MDFGLPSGFSGNITDICPVGALLDLTARFRAR 245 Query: 62 NWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQR 121 NWE++ T T VG I D+R E++RI R ++NE WI D RF ++ R Sbjct: 246 NWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNR 305 Query: 122 LNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRM 181 L P++R +GR W +A + E + +A+ EE+ + E + + + Sbjct: 306 LKTPLVR-KEGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKAL 364 Query: 182 GSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR 241 + ++ +G A + S+ L +AD F LV P EA +++ R+ + VR Sbjct: 365 KTPHLDFQGRTAAP-----ASLFPPASLEDLLQAD-FALVLGDPTEEAPILHLRLSEFVR 418 Query: 242 --ANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFS----------------- 282 + + P DL + K L A R P Sbjct: 419 DLKPPHRYNHGTPFADLQIKERMPRRTDKMAL-FAPYRAPLMKWAAIHEVHRPGEEREIL 477 Query: 283 ------------------AISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPD 324 A AKNPV+I+GAG+ + TV A + R Sbjct: 478 LALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQ--------DTVAAERARLLAERKG 529 Query: 325 WNXXXXXXXXXXXXXXXXXXXXPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHH 384 S + +Y E L FVV H Sbjct: 530 AKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSH 589 Query: 385 GDHGVYR-ANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 443 R A+V+LPA F EK G N EG PA G+A +++ L+E G Sbjct: 590 LHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALG 649 Query: 444 MRLPY 448 +R P+ Sbjct: 650 VRPPF 654

PyMOL of 2fug

>pdb|2IV2|X Chain X, Reinterpretation Of Reduced Form Of Formate Dehydrogenase H From E. Coli Length = 715

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		523
3i9v_3		783	NADH-quinone oxidoreductase subunit 3; electron tr	1e-180
2iv2_X		715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	1e-13
2iv2_X		715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	9e-08
2nap_A		723	Protein (periplasmic nitrate reductase); nitrogeno	5e-13
2nap_A		723	Protein (periplasmic nitrate reductase); nitrogeno	2e-06
3ml1_A		802	NAPA, periplasmic nitrate reductase; heterodimer,	7e-13
3ml1_A		802	NAPA, periplasmic nitrate reductase; heterodimer,	1e-07
2e7z_A		727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	3e-12
2e7z_A		727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	2e-10
1g8k_A		825	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	7e-12
1g8k_A		825	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	3e-05
2vpz_A		765	Thiosulfate reductase; oxidoreductase, molybdopter	4e-10
2vpz_A		765	Thiosulfate reductase; oxidoreductase, molybdopter	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1kqf_A		1015	FDH-N alpha, formate dehydrogenase, nitrate-induci	2e-09
1kqf_A		1015	FDH-N alpha, formate dehydrogenase, nitrate-induci	3e-07
1h0h_A		977	Formate dehydrogenase (large subunit); tungsten se	1e-08
1h0h_A		977	Formate dehydrogenase (large subunit); tungsten se	2e-07
1ti6_A		875	Pyrogallol hydroxytransferase large subunit; molyb	8e-07
1ti6_A		875	Pyrogallol hydroxytransferase large subunit; molyb	3e-05
2ivf_A		976	Ethylbenzene dehydrogenase alpha-subunit; anaerobi	2e-05
1tmo_A		829	TMAO reductase, trimethylamine N-oxide reductase;	6e-05
1eu1_A		780	Dimethyl sulfoxide reductase; molybdenum, molybden	1e-04

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* Length = 783	Back alignment and structure

 Score =  525 bits (1355), Expect = e-180
 Identities = 125/555 (22%), Positives = 208/555 (37%), Gaps = 69/555 (12%)

Query: 2   CVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKAR 61
           CVR+  EV G + L  + RG    IGT  +  + S  SGN+ DICPVGAL      F+AR
Sbjct: 187 CVRYFEEVPGDEVLDFIERGVHTFIGTM-DFGLPSGFSGNITDICPVGALLDLTARFRAR 245

Query: 62  NWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQR 121
           NWE++ T T      VG  I  D+R  E++RI  R   ++NE WI D  RF ++     R
Sbjct: 246 NWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNR 305

Query: 122 LNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRM 181
           L  P++R  +GR     W +A   + E + +A+ EE+       +  E  +   +    +
Sbjct: 306 LKTPLVRK-EGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKAL 364

Query: 182 GSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR 241
            + ++  +           +      S+  L +AD  L++G  P  EA +++ R+ + VR
Sbjct: 365 KTPHLDFQ-----GRTAAPASLFPPASLEDLLQADFALVLGD-PTEEAPILHLRLSEFVR 418

Query: 242 AN------------------------NAKVGYIGP------ATDLNYDHQHLGTGPKTLL 271
                                       K+    P           ++    G   + LL
Sbjct: 419 DLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILL 478

Query: 272 EIAEGRHP------FFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDW 325
            +   +           A   AKNPV+I+GAG+ +          +              
Sbjct: 479 ALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAE---------RKG 529

Query: 326 NGLNVLLLNAAQAAALDLGLVPESSN-SIESAKFVYLMGADDVDLEKLPNDAFVVYQ-GH 383
             +  +   A       +G++P +   S +    +Y         E L    FVV    H
Sbjct: 530 AKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSH 589

Query: 384 HGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 443
                   A+V+LPA  F EK G   N EG      PA    G+A    +++  L+E  G
Sbjct: 590 LHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALG 649

Query: 444 MRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMT 503
           +R P+      +  ++              A   P     +   +           FY+ 
Sbjct: 650 VRPPFRLHLEAQKALK--------------ARKVPEAMGRLSFRLKELRPKERKGAFYLR 695

Query: 504 DSITRASKTMAQCSA 518
            ++ +A + + +   
Sbjct: 696 PTMWKAHQAVGKAQE 710

PyMOL of 3i9v

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A* Length = 715	Back alignment and structure

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A* Length = 715	Back alignment and structure

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A* Length = 723	Back alignment and structure

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A* Length = 723	Back alignment and structure

>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A* Length = 802	Back alignment and structure

>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A* Length = 802	Back alignment and structure

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} Length = 727	Back alignment and structure

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} Length = 727	Back alignment and structure

>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A* Length = 825	Back alignment and structure

>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A* Length = 825	Back alignment and structure

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* Length = 765	Back alignment and structure

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* Length = 765	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A* Length = 1015	Back alignment and structure

>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A* Length = 1015	Back alignment and structure

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1 Length = 977	Back alignment and structure

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1 Length = 977	Back alignment and structure

>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M* Length = 875	Back alignment and structure

>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M* Length = 875	Back alignment and structure

>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} Length = 976	Back alignment and structure

>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1 Length = 829	Back alignment and structure

>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A* Length = 780	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		523
3i9v_3		783	NADH-quinone oxidoreductase subunit 3; electron tr	100.0
2iv2_X		715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	100.0
2nap_A		723	Protein (periplasmic nitrate reductase); nitrogeno	100.0
3ml1_A		802	NAPA, periplasmic nitrate reductase; heterodimer,	100.0
1h0h_A		977	Formate dehydrogenase (large subunit); tungsten se	100.0
1kqf_A		1015	FDH-N alpha, formate dehydrogenase, nitrate-induci	100.0
2e7z_A		727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	100.0
2vpz_A		765	Thiosulfate reductase; oxidoreductase, molybdopter	100.0
1g8k_A		825	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	100.0
4aay_A		845	AROA; oxidoreductase, rieske, iron sulfur, molybdo	100.0
2ivf_A		976	Ethylbenzene dehydrogenase alpha-subunit; anaerobi	100.0
1q16_A		1247	Respiratory nitrate reductase 1 alpha chain; membr	100.0
1ti6_A		875	Pyrogallol hydroxytransferase large subunit; molyb	100.0
1eu1_A		780	Dimethyl sulfoxide reductase; molybdenum, molybden	100.0
1tmo_A		829	TMAO reductase, trimethylamine N-oxide reductase;	100.0
3c8y_A		574	Iron hydrogenase 1; dithiomethylether, H-cluster,	97.58
1jb0_C		80	Photosystem I iron-sulfur center; membrane protein	96.04
1dwl_A		59	Ferredoxin I; electron transfer, model, heteronucl	94.36
3cf4_G		170	Acetyl-COA decarboxylase/synthase epsilon subunit;	94.24
1f2g_A		58	Ferredoxin II; electron transport, FDII desulfovib	93.81
1rof_A		60	Ferredoxin; electron transport, iron-sulfur; NMR {	93.02
1dax_A		64	Ferredoxin I; electron transport, electron-transfe	91.96
1hfe_L		421	Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg	91.66
2c42_A		1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	91.52
1xer_A		103	Ferredoxin; electron transport, iron-sulfur, dupli	91.42
1sj1_A		66	Ferredoxin; thermostability, iron-sulfur cluster,	90.81
2fdn_A		55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	88.08
1iqz_A		81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	87.29
1h98_A		78	Ferredoxin; electron transport, thermophilic, iron	86.94
1bc6_A		77	7-Fe ferredoxin; electron transport, iron-sulfur;	86.85
7fd1_A		106	FD1, protein (7-Fe ferredoxin I); electron transpo	86.63
2wdq_B		238	Succinate dehydrogenase iron-sulfur subunit; succi	86.43
2v2k_A		105	Ferredoxin; iron, transport, iron-sulfur, mycobact	85.83
2fgo_A		82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	85.11
3i9v_9		182	NADH-quinone oxidoreductase subunit 9; electron tr	85.06
1bc6_A		77	7-Fe ferredoxin; electron transport, iron-sulfur;	83.74
2zvs_A		85	Uncharacterized ferredoxin-like protein YFHL; elec	83.3
1rgv_A		80	Ferredoxin; electron transport; 2.90A {Thauera aro	83.3
2fdn_A		55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	82.37
3eun_A		82	Ferredoxin; electron transport, [4Fe-4S] cluster,	81.96
1rgv_A		80	Ferredoxin; electron transport; 2.90A {Thauera aro	81.24
1jnr_B		150	Adenylylsulfate reductase; oxidoreductase; HET: FA	80.23

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*	Back alignment and structure

Probab=100.00  E-value=5.7e-87  Score=743.42  Aligned_cols=441  Identities=28%  Similarity=0.398  Sum_probs=397.7

Q ss_pred             CeeeecccccccceeeeecCCCCceEecCCCCCcCcccccccccccccCcccccccccccccccceeeeeeeccCCCCCc
Q 009859            1 MCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSN   80 (523)
Q Consensus         1 RCvRf~~e~~g~~~lg~~~rg~~~~i~~~~~~~~~~~~~Gn~idvCPvGAlt~k~~~~~aR~Wel~~~~siC~~C~~gC~   80 (523)
                      ||||+|.|++|..+|++.+||.+++|++. +..+.|.+||||+++||||||++|+|+|++|+|++++++|+|++|+.||+
T Consensus       186 ~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~-~~~~~C~~CG~Cv~vCP~gAl~~~~~~~~~r~w~~~~~~s~C~~C~~gC~  264 (783)
T 3i9v_3          186 RCVRYFEEVPGDEVLDFIERGVHTFIGTM-DFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCG  264 (783)
T ss_dssp             HHHHHHHHTTCCCCCEECSCTTSCCEECS-STTCCSTTTTTHHHHCSSSSEEEGGGTTSCCTTTSEEEEEECCSSSSCCE
T ss_pred             HHHHHhhhhcCCceeeeecCCCccEEccC-CCCCCCccchhHHhhcccCceeccccccccccccceEEEEeCCCCCCccc
Confidence            69999999999999999999999999984 45679999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCEEEEEecCCCCCCCccccccccccccCCCCCCCCCCcEEeCCCCCeeEcCHHHHHHHHHHHHHhcCCCCEEE
Q 009859           81 IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVG  160 (523)
Q Consensus        81 i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~~~Rl~~Pl~R~g~g~~~~isWdeAl~~ia~~L~~~~~~~i~~  160 (523)
                      +.+++++|+|+||+|++++++|++|+|+||||+++++|.+||++||+|+ +|+|++|||||||++||++|++++++++++
T Consensus       265 i~v~v~~g~v~rv~~~~~~p~n~g~lC~kGr~~~~~~~~dRL~~Pl~R~-~G~~~~iSWdeAl~~ia~~L~~i~~~~i~~  343 (783)
T 3i9v_3          265 ITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRK-EGRLVEATWEEAFLALKEGLKEARGEEVGL  343 (783)
T ss_dssp             EEEEEETBEEEEEEECCCTTSSCSCCCHHHHHTTTTTTTSCCCSCEEES-SSSEEECCHHHHHHHHHHHHHTCCTTSEEE
T ss_pred             ceeeeECCEEEeccCCCCCCCCCCccChhhhhHhhhhhhccccCceEcc-CCceeEeCHHHHHHHHHHHHHhhccCCEEE
Confidence            9999999999999999999999999999999999999779999999998 799999999999999999999998889999


Q ss_pred             EeCCCCcHHHHHHHHHHHHHcCCCccccCCCccchhhhhhcCcccCCCccccccCCEEEEEcCCCCcchhhHHHHHHHHH
Q 009859          161 IAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTV  240 (523)
Q Consensus       161 ~~g~~~~~e~~~~~~~l~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~  240 (523)
                      ++|+..++|+.+++++|++.+|++|+++..+.|....     ...+.++.|+++||+||+|| ||.+++|+++.|+|+++
T Consensus       344 ~~s~~~t~E~~~~~~kl~~~lGt~n~d~~~~~~~~~~-----~~~~~~~~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~  417 (783)
T 3i9v_3          344 YLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPAS-----LFPPASLEDLLQADFALVLG-DPTEEAPILHLRLSEFV  417 (783)
T ss_dssp             EECTTCCTTHHHHHHHHHHHTTCSCEEETTCCSSCGG-----GSCBCCHHHHHHCSCEEEES-CHHHHSTHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHhCCCcccCCchhhhhhc-----cCCCCCHHHHhhCCEEEEeC-ChhHhCcHHHHHHHHHH
Confidence            9999999999999999999999999998876654321     12346899999999999999 99999999999999986


Q ss_pred             H------------------------hCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHHHcC------cHHHHHHH
Q 009859          241 R------------------------ANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIAEG------RHPFFSAI  284 (523)
Q Consensus       241 ~------------------------~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~~g------i~~~a~~l  284 (523)
                      +                        ++|+||++|||+.+.++..++      ||+|.+.+..++..      |+++|+.|
T Consensus       418 ~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~l~i~PGtD~all~al~~~li~~e~i~~~A~~l  497 (783)
T 3i9v_3          418 RDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAW  497 (783)
T ss_dssp             TTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEEEECCSSCHHHHHHHHHTSSCCCHHHHHHHHHH
T ss_pred             HhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcceEecCCCcHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3                        578999999999999988775      79999988887643      57899999


Q ss_pred             hcCCCcEEEEcCCcccccCHHHHHHHHHHHHHHcCCCCCCCCceeecchhhHHhhHHhcCCCCCccc----cccCccEEE
Q 009859          285 SNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSN----SIESAKFVY  360 (523)
Q Consensus       285 ~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~~----~~~~i~~l~  360 (523)
                      +++++++|++|+++.+|.++..+     +++ ++|++|   .|++++++++|.+|+.++|..|....    ..+ +|++|
T Consensus       498 a~a~~~~I~~G~g~~~~~~~~~~-----~~~-l~g~~G---~g~~~l~~~~N~~Ga~~~G~~p~~~g~~~~~~g-ikal~  567 (783)
T 3i9v_3          498 EKAKNPVLILGAGVLQDTVAAER-----ARL-LAERKG---AKVLAMTPAANARGLEAMGVLPGAKGASWDEPG-ALYAY  567 (783)
T ss_dssp             HHCSSCEEEECSHHHHCHHHHHH-----HHH-HHHHTT---CCEEECCSSTTHHHHHHHTCSCCSSCCCTTSCC-CSEEE
T ss_pred             HhCCCcEEEECchhhhcHHHHHH-----HHH-HhcccC---CCeeeccCcchhhhhhhcCCCCCchhhhhhcCC-CeEEE
Confidence            99999999999999988766432     222 555553   68888999999999999998885421    134 99999


Q ss_pred             EEcCCCCCCCCCCCCceEEEEcccCCccc-CcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCccHHHHHHHHH
Q 009859          361 LMGADDVDLEKLPNDAFVVYQGHHGDHGV-YRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALS  439 (523)
Q Consensus       361 ~~g~n~~~~~~l~~~~fvV~~d~~~t~ta-~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~d~~Il~~La  439 (523)
                      ++|.||+.  .|++++|+|++|+|+|+|+ ++||||||+++|+|++|||+|+||++|+++++++|+||+|+||+||++||
T Consensus       568 v~g~np~~--~L~~~~fvVv~d~~~t~ta~~~ADvvLP~a~~~E~~gt~~n~eg~~~~~~~~v~p~ge~r~d~~il~~La  645 (783)
T 3i9v_3          568 YGFVPPEE--ALKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLA  645 (783)
T ss_dssp             ESSCCCHH--HHTTCSEEEECCSSCCTTTTTTCSEECCCCCGGGCCEEEECTTSBEEEECCCCBCCCSCCCHHHHHHHHH
T ss_pred             EeCCCHHH--HHhhCCEEEEEeCcCCchhhhCCcEEecCCcccccCCeEEccCCcEEEeccccCCCCCCccHHHHHHHHH
Confidence            99999964  3889999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHh
Q 009859          440 EVAGMRLPYDTIGGIRSRIRTV  461 (523)
Q Consensus       440 ~~lg~~~~~~~~~~i~~~~~~~  461 (523)
                      ++||++.+|.+.+++++++.+.
T Consensus       646 ~~lG~~~~~~~~~~~~~~l~~~  667 (783)
T 3i9v_3          646 EALGVRPPFRLHLEAQKALKAR  667 (783)
T ss_dssp             HTTSSCCSCCSHHHHHHHHHHH
T ss_pred             HHhCCCCCCCCHHHHHHHHHhc
Confidence            9999999998888887777665

PyMOL of 3i9v

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*	Back alignment and structure

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*	Back alignment and structure

>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*	Back alignment and structure

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1	Back alignment and structure

>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*	Back alignment and structure

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}	Back alignment and structure

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*	Back alignment and structure

>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*	Back alignment and structure

>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}	Back alignment and structure

>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}	Back alignment and structure

>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*	Back alignment and structure

>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*	Back alignment and structure

>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1	Back alignment and structure

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*	Back alignment and structure

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*	Back alignment and structure

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1	Back alignment and structure

>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}	Back alignment and structure

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A	Back alignment and structure

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A	Back alignment and structure

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A	Back alignment and structure

>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*	Back alignment and structure

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*	Back alignment and structure

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A	Back alignment and structure

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A	Back alignment and structure

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A	Back alignment and structure

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*	Back alignment and structure

>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2	Back alignment and structure

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A	Back alignment and structure

>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...	Back alignment and structure

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*	Back alignment and structure

>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}	Back alignment and structure

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}	Back alignment and structure

>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*	Back alignment and structure

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A	Back alignment and structure

>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}	Back alignment and structure

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1	Back alignment and structure

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A	Back alignment and structure

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A	Back alignment and structure

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1	Back alignment and structure

>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		523
d2fug32		439	c.81.1.1 (3:247-685) NADH-quinone oxidoreductase c	6e-71
d2iv2x2		564	c.81.1.1 (X:1-564) Formate dehydrogenase H {Escher	9e-21
d2iv2x2		564	c.81.1.1 (X:1-564) Formate dehydrogenase H {Escher	2e-14
d2fug34		151	d.58.1.5 (3:96-246) NADH-quinone oxidoreductase ch	1e-19
d1ogya2		670	c.81.1.1 (A:12-681) Periplasmic nitrate reductase	2e-18
d1ogya2		670	c.81.1.1 (A:12-681) Periplasmic nitrate reductase	2e-10
d2jioa2		597	c.81.1.1 (A:4-600) Periplasmic nitrate reductase a	2e-16
d2jioa2		597	c.81.1.1 (A:4-600) Periplasmic nitrate reductase a	4e-08
d1h0ha2		812	c.81.1.1 (A:1-812) Tungsten containing formate deh	1e-12
d1h0ha2		812	c.81.1.1 (A:1-812) Tungsten containing formate deh	5e-09
d1g8ka2		679	c.81.1.1 (A:4-682) Arsenite oxidase large subunit	2e-12
d1g8ka2		679	c.81.1.1 (A:4-682) Arsenite oxidase large subunit	3e-10
d1kqfa2		817	c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha	1e-10
d1kqfa2		817	c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha	9e-09
d1y5ia2		1074	c.81.1.1 (A:1-1074) Respiratory nitrate reductase	1e-09
d1y5ia2		1074	c.81.1.1 (A:1-1074) Respiratory nitrate reductase	7e-09
d3c8ya3		83	d.58.1.5 (A:127-209) Fe-only hydrogenase, second d	4e-08
d1vlfm2		728	c.81.1.1 (M:1-728) Transhydroxylase alpha subunit,	6e-06
d1vlfm2		728	c.81.1.1 (M:1-728) Transhydroxylase alpha subunit,	0.001
d1eu1a2		622	c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DM	8e-06
d1eu1a2		622	c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DM	7e-05
d1tmoa2		627	c.81.1.1 (A:5-631) Trimethylamine N-oxide reductas	6e-05
d1tmoa2		627	c.81.1.1 (A:5-631) Trimethylamine N-oxide reductas	0.004

>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus thermophilus [TaxId: 274]} Length = 439	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: NADH-quinone oxidoreductase chain 3, Nqo3
species: Thermus thermophilus [TaxId: 274]

 Score =  231 bits (589), Expect = 6e-71
 Identities = 90/435 (20%), Positives = 161/435 (37%), Gaps = 54/435 (12%)

Query: 63  WELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRL 122
           WE++ T T      VG  I  D+R  E++RI  R   ++NE WI D  RF ++     RL
Sbjct: 1   WEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRL 60

Query: 123 NDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMG 182
             P++R  +GR     W +A   + E + +A+ EE+       +  E  +   +    + 
Sbjct: 61  KTPLVRK-EGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALK 119

Query: 183 SNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR- 241
           + ++  +G  A   +          S+  L +AD  L++G     EA +++ R+ + VR 
Sbjct: 120 TPHLDFQGRTAAPAS-----LFPPASLEDLLQADFALVLGDP-TEEAPILHLRLSEFVRD 173

Query: 242 -----------------------ANNAKVGYIGP------ATDLNYDHQHLGTGPKTLLE 272
                                      K+    P           ++    G   + LL 
Sbjct: 174 LKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLA 233

Query: 273 IAEGRHPFFS------AISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWN 326
           +   +           A   AKNPV+I+GAG+ +            A  +   +      
Sbjct: 234 LLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTV---------AAERARLLAERKGA 284

Query: 327 GLNVLLLNAAQAAALDLGLVP--ESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHH 384
            +  +   A       +G++P  + ++  E        G    +         V++  H 
Sbjct: 285 KVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHL 344

Query: 385 GDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM 444
                  A+V+LPA  F EK G   N EG      PA    G+A    +++  L+E  G+
Sbjct: 345 HPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGV 404

Query: 445 RLPYDTIGGIRSRIR 459
           R P+      +  ++
Sbjct: 405 RPPFRLHLEAQKALK 419

PyMOL of d2fug32

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]} Length = 564	Back information, alignment and structure

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]} Length = 564	Back information, alignment and structure

>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]} Length = 151	Back information, alignment and structure

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]} Length = 670	Back information, alignment and structure

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]} Length = 670	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 597	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 597	Back information, alignment and structure

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} Length = 812	Back information, alignment and structure

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} Length = 812	Back information, alignment and structure

>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]} Length = 679	Back information, alignment and structure

>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]} Length = 679	Back information, alignment and structure

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]} Length = 817	Back information, alignment and structure

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]} Length = 817	Back information, alignment and structure

>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]} Length = 1074	Back information, alignment and structure

>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]} Length = 1074	Back information, alignment and structure

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Length = 83	Back information, alignment and structure

>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]} Length = 728	Back information, alignment and structure

>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]} Length = 728	Back information, alignment and structure

>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]} Length = 622	Back information, alignment and structure

>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]} Length = 622	Back information, alignment and structure

>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]} Length = 627	Back information, alignment and structure

>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]} Length = 627	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		523
d2iv2x2		564	Formate dehydrogenase H {Escherichia coli [TaxId:	100.0
d2fug32		439	NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus	100.0
d1h0ha2		812	Tungsten containing formate dehydrogenase, large s	100.0
d1kqfa2		817	Formate dehydrogenase N, alpha subunit {Escherichi	100.0
d1ogya2		670	Periplasmic nitrate reductase alpha chain {Rhodoba	100.0
d2jioa2		597	Periplasmic nitrate reductase alpha chain {Desulfo	100.0
d1g8ka2		679	Arsenite oxidase large subunit {Alcaligenes faecal	100.0
d1y5ia2		1074	Respiratory nitrate reductase 1 alpha chain {Esche	100.0
d1eu1a2		622	Dimethylsulfoxide reductase (DMSO reductase) {Rhod	100.0
d1vlfm2		728	Transhydroxylase alpha subunit, AthL {Pelobacter a	100.0
d1tmoa2		627	Trimethylamine N-oxide reductase {Shewanella massi	100.0
d2fug34		151	NADH-quinone oxidoreductase chain 3, Nqo3, domain	99.74
d3c8ya3		83	Fe-only hydrogenase, second domain {Clostridium pa	98.99
d1jb0c_		80	Photosystem I iron-sulfur protein PsaC {Synechococ	96.64
d2fug91		154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	96.3
d1hfel2		85	Fe-only hydrogenase larger subunit, N-domain {Desu	96.08
d1xera_		103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	95.82
d2ihta1		177	Carboxyethylarginine synthase {Streptomyces clavul	95.23
d1sj1a_		66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	94.98
d1ozha1		179	Catabolic acetolactate synthase {Klebsiella pneumo	94.8
d2ez9a1		183	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	94.2
d2ji7a1		175	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	94.14
d1iqza_		81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	94.14
d1ybha1		179	Acetohydroxyacid synthase catalytic subunit {Thale	94.01
d1dura_		55	Ferredoxin II {Peptostreptococcus asaccharolyticus	93.83
d1fxda_		58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	93.73
d2fdna_		55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	93.45
d1pvda1		179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	93.41
d2fdna_		55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	92.97
d1q6za1		160	Benzoylformate decarboxylase {Pseudomonas putida [	92.65
d1dura_		55	Ferredoxin II {Peptostreptococcus asaccharolyticus	91.65
d1bc6a_		77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	91.36
d1t9ba1		171	Acetohydroxyacid synthase catalytic subunit {Baker	91.33
d1hfel2		85	Fe-only hydrogenase larger subunit, N-domain {Desu	90.46
d1gtea5		173	Dihydropyrimidine dehydrogenase, C-terminal domain	90.33
d1xera_		103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	89.87
d1blua_		80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	89.65
d1rgva_		80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	89.39
d1ytla1		158	Acetyl-CoA decarbonylase/synthase complex epsilon	89.26
d1fxra_		64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	88.78
d1zpda1		175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	88.62
d1rgva_		80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	88.59
d2djia1		177	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	88.27
d1jb0c_		80	Photosystem I iron-sulfur protein PsaC {Synechococ	88.02
d1bc6a_		77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	87.87
d1h98a_		77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	87.7
d2c42a5		117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	87.21
d1vjwa_		59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	87.18
d1ovma1		161	Indole-3-pyruvate decarboxylase {Enterobacter cloa	87.01
d1blua_		80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	86.6
d7fd1a_		106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	86.32
d1h98a_		77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	84.64
d7fd1a_		106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	81.41
d1zpda1		175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	80.83

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Formate dehydrogenase H
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-72  Score=607.00  Aligned_cols=437  Identities=21%  Similarity=0.317  Sum_probs=367.7

Q ss_pred             ceeeeeeeccCCCCCcEEEEEECCEEEEEecCCCCCCCccccccccccccCCCC-CC----CCCCcEEeC-CCCCeeEcC
Q 009859           65 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQ----RLNDPMIRG-ADGRFKAVN  138 (523)
Q Consensus        65 l~~~~siC~~C~~gC~i~v~vr~g~v~rv~~~~~~~~n~~~lC~kGr~~~~~~~-~~----Rl~~Pl~R~-g~g~~~~is  138 (523)
                      ||+++|+|++|+.||+|.|+++||+|+||+|+ ++++|+|++|+|||++++.+| |+    ||++||+|+ ++|+|++||
T Consensus         1 ~k~v~TvC~~C~~~C~i~v~v~~G~v~ri~~~-~~~~n~g~lC~kG~~~~~~~~~p~~~~~Rl~~Pl~R~~~~g~~~~IS   79 (564)
T d2iv2x2           1 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAA-QGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVS   79 (564)
T ss_dssp             CEEEEEECSSBTTCCEEEEEEETTEEEEEEEC-CCTTTTTCCCHHHHHTTGGGGCCCSSSCBCCSCEECCSTTSCCEECC
T ss_pred             CceEEEECCCCccCCCeEEEEECCEEEEEECC-CCCCCCcccChhhhhHHHHhcCCCcCCcccCCCeEecCCCCcEEEcC
Confidence            68999999999999999999999999999995 678999999999999999996 77    999999996 478999999


Q ss_pred             HHHHHHHHHHHHHhcCC----CCEEEEeCCC-CcHHHHHHHHHHHH-HcCCCccccCCCccchh------hhhhcCcccC
Q 009859          139 WRDALAVVAEVMLQAKP----EEIVGIAGRL-SDAESMMALKDFLN-RMGSNNVWCEGTGAQSN------ADLRSGYIMN  206 (523)
Q Consensus       139 WdeAl~~ia~~L~~~~~----~~i~~~~g~~-~~~e~~~~~~~l~~-~lG~~~~~~~~~~~~~~------~~~~~~~~~~  206 (523)
                      |||||++||++|+++++    ++|+++.++. +..|..+++++|++ .+|++|++.+.+.|...      ..+|.. ..+
T Consensus        80 WdeAld~ia~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~-~~~  158 (564)
T d2iv2x2          80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVCHGPSVAGLHQSVGNG-AMS  158 (564)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCC-SCS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEEecCCCcccHHHHHHHHHHHHhcCCCCcCCcccccchhHHHHHHhhhcCC-ccc
Confidence            99999999999998753    6888887764 55788888888887 58999998877776432      233322 233


Q ss_pred             CCccccccCCEEEEEcCCCCcchhhHHHHHHHHHHhCCCeEEEEcCCCCCCcchhc------cCCCHHHHHHHH------
Q 009859          207 TSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA------  274 (523)
Q Consensus       207 ~~~~di~~ad~il~~G~n~~~~~p~~~~~lr~a~~~~g~klv~idp~~~~t~~~a~------~g~~~~~l~~~~------  274 (523)
                      .+..|++++|+||+||+|+.+++|....+++++.+ +|+|||+|||+.+.|+..++      ||+|.+.+..++      
T Consensus       159 ~~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~-~G~kvvvidPr~t~ta~~Ad~~l~i~PGtD~al~lal~~~ii~~  237 (564)
T d2iv2x2         159 NAINEIDNTDLVFVFGYNPADSHPIVANHVINAKR-NGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEE  237 (564)
T ss_dssp             SCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHH-TTCEEEEECSSCCHHHHTCSEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             cccceeecCCEEEECCcccccccchHHHHHHHHHH-CCCEEEEECCCCCchHHHhhhhhhcccCcHHHHHhcchhhhhhC
Confidence            57899999999999999999999999999999875 99999999999999988875      788865322111      


Q ss_pred             ---------------------------------cC-----cHHHHHHHhcCCCcEEEEcCCcccccCHHHHHHHHHHHHH
Q 009859          275 ---------------------------------EG-----RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAK  316 (523)
Q Consensus       275 ---------------------------------~g-----i~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~~~~~~L~~  316 (523)
                                                       +|     |+++|++++.+++++|+.|.+..++.++.+..+++..|+.
T Consensus       238 ~~~D~~fv~~~t~gf~~~~~~~~~~tpe~~~~i~gv~~~~I~~~A~~~~~~~~~~i~~g~g~~~~~~~~~~~~a~~~l~~  317 (564)
T d2iv2x2         238 NLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAM  317 (564)
T ss_dssp             TCSCHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHHSSSEEEEEETTGGGSSSHHHHHHHHHHHHH
T ss_pred             CCccHHHHHhhccCcccchhhhhcCCHHHhhhhhcchHHHHHHHHHHhhccCceEEEcccccccccchHHHHHHHHHHHH
Confidence                                             23     6789999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCceeecchhhHHhhHHhcCCCCCcc--------------------------------------ccccCccE
Q 009859          317 KGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESS--------------------------------------NSIESAKF  358 (523)
Q Consensus       317 ~~g~~~~~g~g~~~l~~~~n~~g~~~~g~~p~~~--------------------------------------~~~~~i~~  358 (523)
                      ++|+++++|+|++.+.+..|..++..+|..+...                                      ...+++++
T Consensus       318 l~G~ig~~g~g~~~~~g~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (564)
T d2iv2x2         318 LTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRA  397 (564)
T ss_dssp             HTTCSSSTTCSEEEECSBTTHHHHHHTTCBTTEEGGGEETTCHHHHHHHHHHTTCSCCCCSCCCCGGGHHHHHHTTSCCE
T ss_pred             HhcCCCCCCcccccccCCCCcccccccCcCcccCCcccccCChhhhhhhhhhcccchhhhcccchhhhhhhhhcCCCcee
Confidence            9999999999999998888887777666432210                                      03578999


Q ss_pred             EEEEcCCCCC--------CCCCCCCceEEEEcccCCcccCcceEEecCCCCCCCCceeecCCCceEeecCccCCCCCCcc
Q 009859          359 VYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARD  430 (523)
Q Consensus       359 l~~~g~n~~~--------~~~l~~~~fvV~~d~~~t~ta~~ADvvLP~a~~~E~~gt~~n~eg~~q~~~~~v~p~ge~r~  430 (523)
                      +++++.||+.        .++|++++|+|++|+|+|+|+++||||||+++|+|++|+++|.++++|.++|+|+|+||+|+
T Consensus       398 ~~~~~~np~~~~~~~~~~~~al~kl~fvV~~d~~~teta~~ADiVLP~~~~~E~~g~~~~~~~~~~~~~~~v~P~ge~r~  477 (564)
T d2iv2x2         398 AYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKT  477 (564)
T ss_dssp             EEEESCCHHHHSSSHHHHHHHHHHSSEEEEEESBCCHHHHTCSEEEEBCCBTTBCEEEECTTSEEEEECCCSCCSSSCBC
T ss_pred             EEEEecccccchhhHHHHHHHHhCCCcEEEEecccCCCcccceEeeccCcceeccceEecCCCceEEEeeccCCcccCCC
Confidence            9999999963        24678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCC--CccccCCCCCCCCC----Cccc-c-cccCCCCcc--cccccc
Q 009859          431 DWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLL--HVDEREPATLGPSL----KPEI-K-SEMDLTPFG--SAVENF  500 (523)
Q Consensus       431 d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~~--~~~~~~~~~~~~~~----~~~~-~-~~~~~~~~~--~~~~~~  500 (523)
                      ||+|+++||++||.+++|.+.+|+++++.+..|.+.  +++++.+..+...+    .... . ....+.+|.  +++.+|
T Consensus       478 d~~i~~~La~rlG~~~~~~~~~e~~~~~~~~~~~~~g~t~e~l~~~g~~~~p~~~~~~~~~~~~~~~~~~f~TpsGK~ef  557 (564)
T d2iv2x2         478 DWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQF  557 (564)
T ss_dssp             HHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHCTTTTTCCHHHHTTTCCEESCCCCSSTTCCBCSSSCSSCCSSTTSCEEC
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCcCcCCCCHHHHhcCCCEecCCCCccccCCCcccccCCCCcCCCceEEE
Confidence            999999999999999999999999999999999874  67777765532111    1111 1 111223454  888899


Q ss_pred             cCCc
Q 009859          501 YMTD  504 (523)
Q Consensus       501 y~~d  504 (523)
                      |.+|
T Consensus       558 ~s~~  561 (564)
T d2iv2x2         558 FTCD  561 (564)
T ss_dssp             CCCC
T ss_pred             Eecc
Confidence            9876

PyMOL of d2iv2x2

>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}	Back information, alignment and structure

>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]}	Back information, alignment and structure

>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]}	Back information, alignment and structure

>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}	Back information, alignment and structure

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}	Back information, alignment and structure

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	Back information, alignment and structure

>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}	Back information, alignment and structure

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}	Back information, alignment and structure

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}	Back information, alignment and structure

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}	Back information, alignment and structure

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}	Back information, alignment and structure

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}	Back information, alignment and structure

>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}	Back information, alignment and structure

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	Back information, alignment and structure

>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	Back information, alignment and structure

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	Back information, alignment and structure

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}	Back information, alignment and structure

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}	Back information, alignment and structure

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}	Back information, alignment and structure

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}	Back information, alignment and structure

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	Back information, alignment and structure

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}	Back information, alignment and structure

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	Back information, alignment and structure

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}	Back information, alignment and structure