Citrus Sinensis ID: 009868
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | 2.2.26 [Sep-21-2011] | |||||||
| O69664 | 517 | Glycerol kinase OS=Mycoba | yes | no | 0.952 | 0.963 | 0.510 | 1e-145 | |
| A5U920 | 517 | Glycerol kinase OS=Mycoba | yes | no | 0.952 | 0.963 | 0.510 | 1e-145 | |
| A5CS23 | 505 | Glycerol kinase OS=Clavib | yes | no | 0.952 | 0.986 | 0.503 | 1e-145 | |
| C5C1C4 | 505 | Glycerol kinase OS=Beuten | yes | no | 0.942 | 0.976 | 0.512 | 1e-145 | |
| Q63060 | 524 | Glycerol kinase OS=Rattus | yes | no | 0.956 | 0.954 | 0.504 | 1e-145 | |
| Q64516 | 559 | Glycerol kinase OS=Mus mu | yes | no | 0.956 | 0.894 | 0.502 | 1e-144 | |
| Q14409 | 553 | Putative glycerol kinase | yes | no | 0.944 | 0.893 | 0.516 | 1e-142 | |
| B8GC51 | 498 | Glycerol kinase OS=Chloro | yes | no | 0.936 | 0.983 | 0.523 | 1e-142 | |
| A9WS93 | 504 | Glycerol kinase OS=Reniba | yes | no | 0.942 | 0.978 | 0.506 | 1e-142 | |
| P32189 | 559 | Glycerol kinase OS=Homo s | yes | no | 0.944 | 0.883 | 0.504 | 1e-142 |
| >sp|O69664|GLPK_MYCTU Glycerol kinase OS=Mycobacterium tuberculosis GN=glpK PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/519 (51%), Positives = 348/519 (67%), Gaps = 21/519 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
FI AIDQGTTSTR +I+DH + HQ+E Q P AGWVEH P+EI E + L
Sbjct: 16 FIAAIDQGTTSTRCMIFDHHGAEVARHQLEHEQILPRAGWVEHNPVEIWERTASVLISVL 75
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+ ++ A+G+TNQRETT++W++ TG P YNAIVW D RT + L+++
Sbjct: 76 NATNLSPKDI----AALGITNQRETTLVWNRHTGRPYYNAIVWQDTRTDRIASALDRD-- 129
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G GLP +TYFS KL W++ENVD V+ A + GDALFGT DTW++WNLTGG
Sbjct: 130 GRGNLIRRKAGLPPATYFSGGKLQWILENVDGVRAAAENGDALFGTPDTWVLWNLTGGPR 189
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSN--SEIIGKIGKGWPI 245
GG+HVTDV+NASRTMLM+L+TLDWD L IP +LP+I S+ SE G P+
Sbjct: 190 GGVHVTDVTNASRTMLMDLETLDWDDELLSLFSIPRAMLPEIASSAPSEPYGVTLATGPV 249
Query: 246 TG-IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
G +PI+G LGDQHAAM+GQ C GEAK+TYGTG F+L+NTGE +V+S +GLL+T+ ++
Sbjct: 250 GGEVPITGVLGDQHAAMVGQVCLAPGEAKNTYGTGNFLLLNTGETIVRSNNGLLTTVCYQ 309
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL 363
G P YALEGSIA+ G+AVQWLRD LGIIS A++ E LA QV GG+YFVPAF+GL
Sbjct: 310 FGNAKPV-YALEGSIAVTGSAVQWLRDQLGIISGAAQSEALARQVPDNGGMYFVPAFSGL 368
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
FAP+WR DARG +G++RF + AH+ARA LE++C+Q +DV+D+M+ D+ GV
Sbjct: 369 FAPYWRSDARGAIVGLSRFNTNAHLARATLEAICYQSRDVVDAMEADS---GVRLQ---- 421
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSG 483
+L+VDGG T N+L MQIQAD+LG V+RP ETTALG A+AAGLA+G + +
Sbjct: 422 -VLKVDGGITGNDLCMQIQADVLGVDVVRPVVAETTALGVAYAAGLAVGFWAAPSDLRAN 480
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLS 522
R T P +++ R W +AV+RT + D+S
Sbjct: 481 WREDKRWT--PTWDDDERAAGYAGWRKAVQRTLDWVDVS 517
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Key enzyme in the regulation of glycerol uptake and metabolism. Mycobacterium tuberculosis (taxid: 1773) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 0 |
| >sp|A5U920|GLPK_MYCTA Glycerol kinase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/519 (51%), Positives = 348/519 (67%), Gaps = 21/519 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
FI AIDQGTTSTR +I+DH + HQ+E Q P AGWVEH P+EI E + L
Sbjct: 16 FIAAIDQGTTSTRCMIFDHHGAEVARHQLEHEQILPRAGWVEHNPVEIWERTASVLISVL 75
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+ ++ A+G+TNQRETT++W++ TG P YNAIVW D RT + L+++
Sbjct: 76 NATNLSPKDI----AALGITNQRETTLVWNRHTGRPYYNAIVWQDTRTDRIASALDRD-- 129
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G GLP +TYFS KL W++ENVD V+ A + GDALFGT DTW++WNLTGG
Sbjct: 130 GRGNLIRRKAGLPPATYFSGGKLQWILENVDGVRAAAENGDALFGTPDTWVLWNLTGGPR 189
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSN--SEIIGKIGKGWPI 245
GG+HVTDV+NASRTMLM+L+TLDWD L IP +LP+I S+ SE G P+
Sbjct: 190 GGVHVTDVTNASRTMLMDLETLDWDDELLSLFSIPRAMLPEIASSAPSEPYGVTLATGPV 249
Query: 246 TG-IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
G +PI+G LGDQHAAM+GQ C GEAK+TYGTG F+L+NTGE +V+S +GLL+T+ ++
Sbjct: 250 GGEVPITGVLGDQHAAMVGQVCLAPGEAKNTYGTGNFLLLNTGETIVRSNNGLLTTVCYQ 309
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL 363
G P YALEGSIA+ G+AVQWLRD LGIIS A++ E LA QV GG+YFVPAF+GL
Sbjct: 310 FGNAKPV-YALEGSIAVTGSAVQWLRDQLGIISGAAQSEALARQVPDNGGMYFVPAFSGL 368
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
FAP+WR DARG +G++RF + AH+ARA LE++C+Q +DV+D+M+ D+ GV
Sbjct: 369 FAPYWRSDARGAIVGLSRFNTNAHLARATLEAICYQSRDVVDAMEADS---GVRLQ---- 421
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSG 483
+L+VDGG T N+L MQIQAD+LG V+RP ETTALG A+AAGLA+G + +
Sbjct: 422 -VLKVDGGITGNDLCMQIQADVLGVDVVRPVVAETTALGVAYAAGLAVGFWAAPSDLRAN 480
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLS 522
R T P +++ R W +AV+RT + D+S
Sbjct: 481 WREDKRWT--PTWDDDERAAGYAGWRKAVQRTLDWVDVS 517
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Key enzyme in the regulation of glycerol uptake and metabolism. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|A5CS23|GLPK_CLAM3 Glycerol kinase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/516 (50%), Positives = 365/516 (70%), Gaps = 18/516 (3%)
Query: 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65
E +I AIDQGTTSTR I++DH + + Q+E Q +P AGWVEH+PMEI + R + +
Sbjct: 3 EKYIVAIDQGTTSTRAIVFDHSGSIVSTGQLEHEQIFPRAGWVEHDPMEIWRNTREVIGQ 62
Query: 66 ALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKE 125
AL KA H+V +A+G+TNQRET V+W ++TG P+YNAIVW D RT + +L +
Sbjct: 63 ALSKADITRHDV----EAVGITNQRETAVVWDRTTGKPVYNAIVWQDTRTQKIVDRLAAD 118
Query: 126 LPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGG 185
GG F VGLP++TYFS K++W++ENVD +E + G+ +FGT DTW++WNLTGG
Sbjct: 119 --GGVERFKPTVGLPLATYFSGTKIVWILENVDGAREKAEAGELMFGTTDTWVLWNLTGG 176
Query: 186 VNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
+GG+HVTDV+NASRT+ M+L+TL WD L+ +P +LP+I S+SE+ G++ +
Sbjct: 177 TDGGVHVTDVTNASRTLFMDLETLQWDDEILKAFDVPRSMLPEIKSSSEVYGQVESSSLL 236
Query: 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
+PI+G LGDQ AA GQA +GE+K+TYGTG F++ NTG +++ S++GLL+TL +KL
Sbjct: 237 REVPIAGILGDQQAATFGQAAFDQGESKNTYGTGNFLIFNTGTDIIHSQNGLLTTLGYKL 296
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
G + P +YALEGSIA+ G+ VQW+RD+LG++SSA+EIE LA V GGVYFVPAF+GLF
Sbjct: 297 GDQEP-HYALEGSIAVTGSLVQWMRDNLGLVSSAAEIETLAATVEDNGGVYFVPAFSGLF 355
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
AP+WR DARG +G+TR+ +K HIARA LE+ FQ ++VLD++ D+ GV D
Sbjct: 356 APYWRSDARGALVGLTRYVNKGHIARAALEATAFQTREVLDAVNADS---GV--DLTE-- 408
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGE 484
L+VDGG NNLLMQ QAD+LG PV+RP ETTALGAA+AAGLA+G +K ++ D +
Sbjct: 409 -LKVDGGMIANNLLMQFQADILGVPVVRPVVAETTALGAAYAAGLAVGFWK--DLDDLRQ 465
Query: 485 RTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520
+ + + P +++ R+++ W +AV +TF+ D
Sbjct: 466 NWQEDSRWTPDMDDAERERQLRLWKKAVTKTFDWVD 501
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Key enzyme in the regulation of glycerol uptake and metabolism. Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) (taxid: 443906) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|C5C1C4|GLPK_BEUC1 Glycerol kinase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/517 (51%), Positives = 358/517 (69%), Gaps = 24/517 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ AIDQGTTS+R II+DH + + Q E Q +P AGWVEH+P EI +VR + +AL
Sbjct: 4 YVLAIDQGTTSSRAIIFDHSGTIVATGQKEHEQIFPRAGWVEHDPEEIWTNVRDVVGQAL 63
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+A+ N+ AIG+TNQRET V+W ++TG P+YNAIVW D RT +++ +EL
Sbjct: 64 GRASVRASNI----AAIGITNQRETAVVWDRTTGKPVYNAIVWQDTRT----QRIVEELG 115
Query: 128 G--GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGG 185
G G + VGLP++TYFS K+ W+++NVD +EA ++GD LFG DTW++WN+TGG
Sbjct: 116 GSEGAEKYKARVGLPLATYFSGPKIKWILDNVDGAREAAERGDLLFGNTDTWVLWNMTGG 175
Query: 186 VNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
VNGG+HVTDV+NASRTMLM+L TL W+ +GIP +LP+I S+SE+ GK + +
Sbjct: 176 VNGGVHVTDVTNASRTMLMDLDTLSWNPDIAADMGIPVSMLPEIRSSSEVYGKDREEGLL 235
Query: 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
G+PI+G LGDQ AA GQAC + G AK+TYGTG F+LMNTG E V S++GLL+T+ +K+
Sbjct: 236 AGVPIAGILGDQQAATFGQACFEIGMAKNTYGTGNFMLMNTGTEQVASENGLLTTVCYKI 295
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
G + P YALEGSIA+ G+ VQWLRD+L +IS+A EIE LAL V GG YFVPAF+GLF
Sbjct: 296 GDQ-PQVYALEGSIAVTGSLVQWLRDNLKVISTAPEIENLALTVEDNGGAYFVPAFSGLF 354
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
AP+WR DARG +G+TR+ S HIARA LE+ FQ +VLD+M+ D+ GV D
Sbjct: 355 APYWRADARGALVGLTRYVSLGHIARAALEATAFQSAEVLDAMKADS---GV--DLTE-- 407
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFK-EEEIFDSG 483
L+VDGG N +LMQ QAD+LG V+RP ETTALGAA+AAG+A+G + E+++ D+
Sbjct: 408 -LKVDGGMVANEVLMQFQADILGVDVVRPKVAETTALGAAYAAGIAVGFWNGEQDVIDNW 466
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520
K T P ++ R + +W +AV +TF+ D
Sbjct: 467 AEDKRWT---PQMDRGDRDRLYRNWKKAVTKTFDWVD 500
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Key enzyme in the regulation of glycerol uptake and metabolism. Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) (taxid: 471853) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|Q63060|GLPK_RAT Glycerol kinase OS=Rattus norvegicus GN=Gk PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 266/527 (50%), Positives = 366/527 (69%), Gaps = 27/527 (5%)
Query: 1 MAKAKEV----FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEI 55
MA AK+ +GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EI
Sbjct: 1 MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEI 60
Query: 56 LESVRVCMAKALDKATADGHNVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDAR 114
L+SV C+ K +K N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D R
Sbjct: 61 LQSVYECIEKTCEKLGQ--LNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLR 118
Query: 115 TSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTI 174
T S KL K +PG GLP+STYFSAVKL W+++NV V+EA+++ ALFGTI
Sbjct: 119 TQSTVEKLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTI 178
Query: 175 DTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSE 234
D+WLIW+LTGG+NGG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+SE
Sbjct: 179 DSWLIWSLTGGINGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSSE 238
Query: 235 IIGKIGKGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSK 293
I G + G + G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG + V S+
Sbjct: 239 IYGLMKAG-ALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGHKCVFSE 297
Query: 294 HGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGG 353
HGLL+T+A+KLG P YALEGS+AIAGA ++WLRD+LGII S+ EIE+LA +V ++ G
Sbjct: 298 HGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVGTSYG 357
Query: 354 VYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVE 413
YFVPAF+ L+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M +D
Sbjct: 358 CYFVPAFSALYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDC-- 415
Query: 414 KGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETT----ALGAAFAAGL 469
G+ L+VDGG T N +LMQ+QAD+L PV++P+ ETT A+ A A G+
Sbjct: 416 -GIPLSH-----LQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGV 469
Query: 470 AIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTF 516
+ + E++ T F+P +N E + + +W +AV ++
Sbjct: 470 GVWSLEPEDL-----SAVTMERFEPQINAEESEIRYSTWKKAVMKSI 511
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Key enzyme in the regulation of glycerol uptake and metabolism (By similarity). Increases the binding of activated glucocorticoid-receptor to nuclei in the presence of ATP. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|Q64516|GLPK_MOUSE Glycerol kinase OS=Mus musculus GN=Gk PE=2 SV=2 | Back alignment and function description |
|---|
Score = 510 bits (1314), Expect = e-144, Method: Compositional matrix adjust.
Identities = 267/531 (50%), Positives = 367/531 (69%), Gaps = 31/531 (5%)
Query: 1 MAKAKEV----FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEI 55
MA AK+ +GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EI
Sbjct: 1 MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEI 60
Query: 56 LESVRVCMAKALDKATADGHNVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDAR 114
L+SV C+ K +K N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D R
Sbjct: 61 LQSVYECIEKTCEKLGQ--LNIDISNIKAIGVSNQRETTVVWDKVTGEPLYNAVVWLDLR 118
Query: 115 TSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTI 174
T S L K +PG GLP+STYFSAVKL W+++NV V+EA+++ ALFGTI
Sbjct: 119 TQSTVENLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTI 178
Query: 175 DTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSE 234
D+WLIW+LTGG++GG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+SE
Sbjct: 179 DSWLIWSLTGGIHGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSSE 238
Query: 235 IIG--KIG---KGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEE 288
I G KI K + G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG +
Sbjct: 239 IYGLMKISHSLKAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGHK 298
Query: 289 VVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQV 348
V S+HGLL+T+A+KLG P YALEGS+AIAGA ++WLRD+LGII S+ EIE+LA +V
Sbjct: 299 CVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEV 358
Query: 349 NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQ 408
++ G YFVPAF+GL+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M
Sbjct: 359 GTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMN 418
Query: 409 KDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETT----ALGAA 464
+D G+ L+VDGG T N +LMQ+QAD+L PV++P+ ETT A+ A
Sbjct: 419 RDC---GIPLSH-----LQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAG 470
Query: 465 FAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
A G+ + + E++ T F+P +N E + + +W +AV ++
Sbjct: 471 AAEGVGVWSLEPEDL-----SAVTMERFEPQINAEESEIRYSTWKKAVMKS 516
|
Key enzyme in the regulation of glycerol uptake and metabolism. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|Q14409|GLPK3_HUMAN Putative glycerol kinase 3 OS=Homo sapiens GN=GK3P PE=5 SV=2 | Back alignment and function description |
|---|
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 266/515 (51%), Positives = 360/515 (69%), Gaps = 21/515 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKA 66
+GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EIL SV C+ K
Sbjct: 12 LVGAVDQGTSSTRFLVFNSRTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEKT 71
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
+K + S +KAIG++NQRETTV+W K TG PLYNA+VW+D RT S L K +
Sbjct: 72 CEKLGQLNIGI-SNIKAIGVSNQRETTVVWDKITGEPLYNAVVWLDLRTQSTVESLSKRI 130
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
PG GLP+STYFSAVKL W+++NV V++A+++ ALFGTID+WLIW+LTGGV
Sbjct: 131 PGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEKRALFGTIDSWLIWSLTGGV 190
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPIT 246
NGG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+SEI G + G +
Sbjct: 191 NGGVHCTDVTNASRTMLFNIHSLEWDKQLCEFFGIPMEILPHVRSSSEIYGLMKAG-ALE 249
Query: 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG + V S HGLL+T+A+KLG
Sbjct: 250 GVPISGCLGDQSAALVGQMCFQIGQAKNTYGTGCFLLCNTGHKCVFSDHGLLTTVAYKLG 309
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
P YALEGS+AIAGA ++WLRD+LGII ++ EIE+LA +V ++ G YFVPAF+GL+A
Sbjct: 310 RDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVGTSYGCYFVPAFSGLYA 369
Query: 366 PWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL 425
P+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M +D G+
Sbjct: 370 PYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDC---GIPLSH----- 421
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGV----FKEEEIFD 481
L+VDGG T N +LMQ+QAD+L PV++P ETTALGAA AAG A GV + E++
Sbjct: 422 LQVDGGMTSNKILMQLQADILYIPVVKPLMPETTALGAAMAAGAAEGVDVWSLEPEDL-- 479
Query: 482 SGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTF 516
T F+P +N E + + +W +AV ++
Sbjct: 480 ---SAVTMERFEPQINAEESEIRYSTWKKAVMKSM 511
|
Key enzyme in the regulation of glycerol uptake and metabolism. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|B8GC51|GLPK_CHLAD Glycerol kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/512 (52%), Positives = 357/512 (69%), Gaps = 22/512 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+ AIDQGTTSTR +I+DH I Q E Q YP GWVEH P EI E + + AL
Sbjct: 4 YAAAIDQGTTSTRCMIFDHSGNVICYDQKEHEQIYPRPGWVEHSPDEIWERTQSVIRGAL 63
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
K G S + A+G+TNQRETTV+W++ TG P+YNAIVW D RT +C +L +
Sbjct: 64 SK----GGLSASDIVAVGITNQRETTVVWNRKTGRPVYNAIVWQDTRTDQICNELAAD-- 117
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
GG+ F VGLP++TYFS K+ W+++NV +EA + GD +FG IDT+L W LTGG N
Sbjct: 118 GGQDRFRAKVGLPLATYFSGPKIRWILDNVPDAREAAEAGDVVFGNIDTFLTWWLTGGPN 177
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGK-IGKGWPIT 246
GG+HVTDV+NASRTMLMNL+TLDWD L +GIP ++LPKIV +S + G +G+ +
Sbjct: 178 GGVHVTDVTNASRTMLMNLETLDWDDEILSVMGIPRQMLPKIVPSSMVYGTAVGE---LA 234
Query: 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
G+P++G LGDQ AAM+GQ C GEAK+TYGTG+F+L+NTG ++V SK GLL+T+ +K G
Sbjct: 235 GVPVAGILGDQQAAMVGQTCFDVGEAKNTYGTGSFMLLNTGTKIVPSKSGLLTTVCYKFG 294
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
+ P YALEGSIAI GA VQWLRD+LG+I++++E+E LA V GG+YFVPAF+GLFA
Sbjct: 295 DQ-PAVYALEGSIAITGALVQWLRDNLGLITTSAEVEALANLVEDNGGIYFVPAFSGLFA 353
Query: 366 PWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL 425
P+WR DARGV +G+TR+ +K H+ARAVLE+ +Q ++VLD+M++D+ GV A
Sbjct: 354 PYWRSDARGVIVGLTRYVNKGHLARAVLEATAYQTREVLDAMEQDS---GVKLTA----- 405
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485
L+VDGG NN LMQ QAD+LG PVIRP ETT+LGAA+AAGLA+G + + +
Sbjct: 406 LKVDGGMVYNNTLMQFQADILGVPVIRPKVAETTSLGAAYAAGLAVGFWSNTDEMRA--N 463
Query: 486 TKTSTTFKPVLNEEFRKKKAESWCRAVERTFN 517
T+ P ++E R++ W +AV RTF+
Sbjct: 464 WGVDHTWTPQMDEATRERLYRGWKKAVTRTFD 495
|
Key enzyme in the regulation of glycerol uptake and metabolism. Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|A9WS93|GLPK_RENSM Glycerol kinase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 262/517 (50%), Positives = 354/517 (68%), Gaps = 24/517 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ AIDQGTTS+R II+DH + + Q+E Q +P+AGWVEH EI + R + AL
Sbjct: 4 YVIAIDQGTTSSRAIIFDHDGNIVSTGQLEHEQIFPKAGWVEHNATEIWNNTREVIGTAL 63
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA H++ A+G+TNQRET V+W K+TG P+YNAIVW D RT S+ +L +
Sbjct: 64 SKANLTRHDI----AAVGITNQRETAVVWDKTTGEPVYNAIVWQDTRTQSIVDELA--VG 117
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
GG F + VGLP++TYFS K+ W+++NVD +E GD LFG D+W+ WNLTGGV+
Sbjct: 118 GGVERFKDKVGLPLATYFSGTKIKWILDNVDGARERAAAGDLLFGNTDSWVTWNLTGGVD 177
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
GG+H+TDV+NASRTM M+L TL WD+ L+ G+PA +LP I S+SE+ G + +
Sbjct: 178 GGVHITDVTNASRTMFMDLATLSWDQEILDAFGVPASMLPTIKSSSEVYGTVHTSQLLRE 237
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
+P++G LGDQ AA GQA GEAK+TYGTG F++ NTGEE+V SK+GLL+T+ +KLG
Sbjct: 238 VPVAGILGDQQAATFGQAAFNTGEAKNTYGTGCFLIFNTGEEIVHSKNGLLTTVGYKLG- 296
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
APT+YALEGSIA+AG+ +QWLRD+LG+ISSA E+EELA V GGVY VPAF+GLFAP
Sbjct: 297 DAPTHYALEGSIAVAGSLIQWLRDTLGMISSAPEVEELAASVEDNGGVYIVPAFSGLFAP 356
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
+WR DARG +G+TR+ ++ HIARA LE+ FQ ++VLD++ D+ GV L
Sbjct: 357 YWRSDARGAIVGMTRYVNRNHIARAALEATAFQTREVLDAVNADS---GVPLTE-----L 408
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERT 486
+VDGG N+ LMQ QAD+LG PVIRP ETTALGAA+AAGLA+G + D GE +
Sbjct: 409 KVDGGMVANDALMQFQADILGVPVIRPKVTETTALGAAYAAGLAVGFWN-----DLGELS 463
Query: 487 KT---STTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520
++P + E+ R ++ W +AV ++ + D
Sbjct: 464 SNWAEDKRWEPAMEEDERARQLRLWKKAVTKSMDWVD 500
|
Key enzyme in the regulation of glycerol uptake and metabolism. Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) (taxid: 288705) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|P32189|GLPK_HUMAN Glycerol kinase OS=Homo sapiens GN=GK PE=1 SV=3 | Back alignment and function description |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 263/521 (50%), Positives = 360/521 (69%), Gaps = 27/521 (5%)
Query: 8 FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKA 66
+GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EIL SV C+ K
Sbjct: 12 LVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEKT 71
Query: 67 LDKATADGHNVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKE 125
+K N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D RT S L K
Sbjct: 72 CEKLGQ--LNIDISNIKAIGVSNQRETTVVWDKITGEPLYNAVVWLDLRTQSTVESLSKR 129
Query: 126 LPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGG 185
+PG GLP+STYFSAVKL W+++NV V++A+++ ALFGTID+WLIW+LTGG
Sbjct: 130 IPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEKRALFGTIDSWLIWSLTGG 189
Query: 186 VNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG--KIG--- 240
VNGG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+SEI G KI
Sbjct: 190 VNGGVHCTDVTNASRTMLFNIHSLEWDKQLCEFFGIPMEILPNVRSSSEIYGLMKISHSV 249
Query: 241 KGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLST 299
K + G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG + V S HGLL+T
Sbjct: 250 KAGALEGVPISGCLGDQSAALVGQMCFQIGQAKNTYGTGCFLLCNTGHKCVFSDHGLLTT 309
Query: 300 LAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPA 359
+A+KLG P YALEGS+AIAGA ++WLRD+LGII ++ EIE+LA +V ++ G YFVPA
Sbjct: 310 VAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVGTSYGCYFVPA 369
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
F+GL+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M +D G+
Sbjct: 370 FSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDC---GIPLS 426
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETT----ALGAAFAAGLAIGVFK 475
L+VDGG T N +LMQ+QAD+L PV++P+ ETT A+ A A G+ + +
Sbjct: 427 H-----LQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGVGVWSLE 481
Query: 476 EEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTF 516
E++ T F+P +N E + + +W +AV ++
Sbjct: 482 PEDL-----SAVTMERFEPQINAEESEIRYSTWKKAVMKSM 517
|
Key enzyme in the regulation of glycerol uptake and metabolism. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | ||||||
| 449436162 | 523 | PREDICTED: glycerol kinase-like [Cucumis | 1.0 | 1.0 | 0.864 | 0.0 | |
| 225463623 | 522 | PREDICTED: probable glycerol kinase isof | 0.998 | 1.0 | 0.841 | 0.0 | |
| 147837886 | 522 | hypothetical protein VITISV_037711 [Viti | 0.998 | 1.0 | 0.839 | 0.0 | |
| 117168061 | 522 | At1g80460 [Arabidopsis thaliana] | 0.986 | 0.988 | 0.819 | 0.0 | |
| 255553277 | 521 | glycerol kinase, putative [Ricinus commu | 0.996 | 1.0 | 0.831 | 0.0 | |
| 224134466 | 519 | predicted protein [Populus trichocarpa] | 0.990 | 0.998 | 0.824 | 0.0 | |
| 15220142 | 522 | glycerol kinase [Arabidopsis thaliana] g | 0.986 | 0.988 | 0.821 | 0.0 | |
| 297839893 | 522 | At1g80460 [Arabidopsis lyrata subsp. lyr | 0.986 | 0.988 | 0.821 | 0.0 | |
| 351724137 | 519 | glycerol kinase [Glycine max] gi|4045726 | 0.986 | 0.994 | 0.805 | 0.0 | |
| 357468137 | 519 | Glycerol kinase [Medicago truncatula] gi | 0.986 | 0.994 | 0.786 | 0.0 |
| >gi|449436162|ref|XP_004135863.1| PREDICTED: glycerol kinase-like [Cucumis sativus] gi|449509293|ref|XP_004163547.1| PREDICTED: glycerol kinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/523 (86%), Positives = 498/523 (95%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
MAKA++VF+G+IDQGTTS+RFIIYD +RPIGSHQ EFTQFYPEAGWVEH+P+EILESV+
Sbjct: 1 MAKAEDVFVGSIDQGTTSSRFIIYDRHSRPIGSHQAEFTQFYPEAGWVEHDPVEILESVK 60
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
VCMAKALDKATA G+NVD+GLKAIGLTNQRETT++WSKSTG PL++AIVWMDARTSS+CR
Sbjct: 61 VCMAKALDKATAAGYNVDNGLKAIGLTNQRETTLVWSKSTGFPLHHAIVWMDARTSSICR 120
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
KLEKEL GG+THF++ GLPISTYFSAVKL+W+MENV+AV+E+IKK DALFGTIDTWLIW
Sbjct: 121 KLEKELSGGRTHFVDTCGLPISTYFSAVKLIWLMENVEAVRESIKKEDALFGTIDTWLIW 180
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240
NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA+ILPKIVSNSE+IGKI
Sbjct: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAQILPKIVSNSEVIGKIS 240
Query: 241 KGWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTL 300
+GWPITG+PISGCLGDQHAAMLGQAC+KGEAKSTYGTGAFIL+NTGEEVV+SKHGLL+TL
Sbjct: 241 QGWPITGVPISGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEEVVQSKHGLLTTL 300
Query: 301 AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAF 360
AFKLGP APTNYALEGSIAIAGAAVQWLRDSLGIISSA EIE+LA QV STGGVYFVPAF
Sbjct: 301 AFKLGPDAPTNYALEGSIAIAGAAVQWLRDSLGIISSAQEIEKLASQVQSTGGVYFVPAF 360
Query: 361 NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDA 420
NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSM KDAVEKG +K+
Sbjct: 361 NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMHKDAVEKGEVKNE 420
Query: 421 KSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIF 480
K EFLLRVDGGATVNNLLMQIQADLLGSPV+RPADIETTALGAA+AAGLA+G++ ++EIF
Sbjct: 421 KGEFLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGIWSKDEIF 480
Query: 481 DSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
DSGER K++TTF PVL EE RKKK ESWC+AV RTF+LADLSL
Sbjct: 481 DSGERVKSATTFYPVLEEELRKKKVESWCKAVSRTFDLADLSL 523
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463623|ref|XP_002273367.1| PREDICTED: probable glycerol kinase isoform 1 [Vitis vinifera] gi|297743524|emb|CBI36391.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/523 (84%), Positives = 496/523 (94%), Gaps = 1/523 (0%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
MAK ++VF+G+IDQGTTSTRFIIYD A+P+GSHQVEFTQFYPEAGWVEH+PMEILESVR
Sbjct: 1 MAK-EDVFVGSIDQGTTSTRFIIYDRSAQPVGSHQVEFTQFYPEAGWVEHDPMEILESVR 59
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
VC+ KA+DKATADGHNVDSGLKAIGLTNQRETT++WSKSTG PLY+AIVWMDARTSS+CR
Sbjct: 60 VCIEKAIDKATADGHNVDSGLKAIGLTNQRETTLIWSKSTGLPLYHAIVWMDARTSSICR 119
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
KLEKELPGG+THF+E GLPISTYFSA+KLLW++ENVDAVK+A++ GDALFGTIDTWLIW
Sbjct: 120 KLEKELPGGRTHFVETCGLPISTYFSALKLLWLLENVDAVKKAVEAGDALFGTIDTWLIW 179
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240
N+TGG+NGG+HVTDVSNASRTMLMNLKTLDWDKPTL+TLGI AEILPKIVSN+EIIG +
Sbjct: 180 NMTGGLNGGVHVTDVSNASRTMLMNLKTLDWDKPTLDTLGISAEILPKIVSNAEIIGTVA 239
Query: 241 KGWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTL 300
KGWPI+G+PISGCLGDQHAAMLGQAC+KGEAKSTYGTGAFIL+NTGEEV++SKHGLL+TL
Sbjct: 240 KGWPISGLPISGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEEVIESKHGLLTTL 299
Query: 301 AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAF 360
AFKLG +APTNYALEGSIAIAGAAVQWLRDSLGIIS+ASEIEELA +V+S+GGVYFVPAF
Sbjct: 300 AFKLGREAPTNYALEGSIAIAGAAVQWLRDSLGIISTASEIEELAAKVDSSGGVYFVPAF 359
Query: 361 NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDA 420
NGLFAPWWRDDARGVCIGITRFT+K+HIARAVLESMCFQVKDVLDSM KDA EKG +K+
Sbjct: 360 NGLFAPWWRDDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMHKDAGEKGEVKNE 419
Query: 421 KSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIF 480
K EFLLRVDGGAT+NNLLMQIQADLLG+PV+RPADIETTALGAA+AAGLA+G++ E+EIF
Sbjct: 420 KGEFLLRVDGGATINNLLMQIQADLLGNPVVRPADIETTALGAAYAAGLAVGIWTEDEIF 479
Query: 481 DSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
DSGE+ K +TTF P L+EE R KK ESWC+AV RTF+LADLSL
Sbjct: 480 DSGEKVKLATTFYPALDEERRNKKVESWCKAVSRTFDLADLSL 522
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147837886|emb|CAN76048.1| hypothetical protein VITISV_037711 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/523 (83%), Positives = 494/523 (94%), Gaps = 1/523 (0%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
MAK ++VF+G+IDQGTTSTRFIIYD A+P+GSHQVEFTQFYPEAGWVEH+PMEILESV
Sbjct: 1 MAK-EDVFVGSIDQGTTSTRFIIYDRSAQPVGSHQVEFTQFYPEAGWVEHDPMEILESVX 59
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
VC+ KA+DKATADGHNVDSGLKAIGLTNQRETT++WSKSTG PLY+AIVWMDARTSS+CR
Sbjct: 60 VCIXKAIDKATADGHNVDSGLKAIGLTNQRETTLIWSKSTGLPLYHAIVWMDARTSSICR 119
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
KLEK+LPGG+THF+E GLPISTYFSA+KLLW++ENVDAVK+A++ GDALFGTIDTWLIW
Sbjct: 120 KLEKKLPGGRTHFVETCGLPISTYFSALKLLWLLENVDAVKKAVEAGDALFGTIDTWLIW 179
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240
N+TGG+NGG+HVTDVSNASRTMLMNLKTLDWDKPTL+TLGI AEILPKIVSN+EIIG +
Sbjct: 180 NMTGGLNGGVHVTDVSNASRTMLMNLKTLDWDKPTLDTLGISAEILPKIVSNAEIIGTVA 239
Query: 241 KGWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTL 300
KGWPI G+PISGCLGDQHAAMLGQAC+KGEAKSTYGTGAFIL+NTGEEV++SKHGLL+TL
Sbjct: 240 KGWPIPGLPISGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEEVIESKHGLLTTL 299
Query: 301 AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAF 360
AFKLG +APTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELA +V+S+GGVYFVPAF
Sbjct: 300 AFKLGREAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELAAKVDSSGGVYFVPAF 359
Query: 361 NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDA 420
NGLFAPWWRDDARGVCIGITRFT+K+HIARAVLESMCFQVKDVLDSM KDA EKG +K+
Sbjct: 360 NGLFAPWWRDDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMHKDAGEKGEVKNE 419
Query: 421 KSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIF 480
K EFLLRVDGGAT+NNLLMQIQADLLG+PV+RPADIETTALGAA+AAGLA+G++ E+EIF
Sbjct: 420 KGEFLLRVDGGATINNLLMQIQADLLGNPVVRPADIETTALGAAYAAGLAVGIWTEDEIF 479
Query: 481 DSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
DSGE+ K +TTF P L+EE R KK ESWC+AV RTF+LADLSL
Sbjct: 480 DSGEKVKLATTFYPALDEERRNKKVESWCKAVSRTFDLADLSL 522
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|117168061|gb|ABK32113.1| At1g80460 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/516 (81%), Positives = 475/516 (92%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
FIG+IDQGTTSTRFIIYDH ARP+ SHQVEFTQFYPEAGWVEH+PMEILESV+VC+AKAL
Sbjct: 7 FIGSIDQGTTSTRFIIYDHDARPVASHQVEFTQFYPEAGWVEHDPMEILESVKVCIAKAL 66
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
DKATADGHNVD GLKAIGLT+QRETTV+WSKSTG PL+ AIVWMDARTSS+CR+LEKEL
Sbjct: 67 DKATADGHNVDGGLKAIGLTDQRETTVVWSKSTGLPLHKAIVWMDARTSSICRRLEKELS 126
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
GG++HF+E+ GLPISTYFSA+KLLW+MENVD VK+AIKKGDA+FGTIDTWLIWN+TGG+N
Sbjct: 127 GGRSHFVESCGLPISTYFSAMKLLWLMENVDDVKDAIKKGDAIFGTIDTWLIWNMTGGIN 186
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
GGLHVTDV+NASRTMLMNLKTL WD+ TL+TLGIPAEILPKIVSNSE+IG+I KGWPI G
Sbjct: 187 GGLHVTDVTNASRTMLMNLKTLSWDQDTLKTLGIPAEILPKIVSNSEVIGEICKGWPIPG 246
Query: 248 IPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPK 307
I I+GCLGDQHAAMLGQAC+KGEAKSTYGTGAFIL+NTGE +KS HGLL+TLA+KLGP+
Sbjct: 247 IKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVPIKSGHGLLTTLAYKLGPQ 306
Query: 308 APTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPW 367
A TNYALEGSIAIAGAAVQWLRDSLGII SASEIE+LA V+STGGVYFVPAFNGLFAPW
Sbjct: 307 AQTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVDSTGGVYFVPAFNGLFAPW 366
Query: 368 WRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLR 427
WR+DARGVCIGITRFT+K+HIARAVLESMCFQVKDVLDSM KDA EKG + + K EFLLR
Sbjct: 367 WREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNKDAGEKGSLNNGKGEFLLR 426
Query: 428 VDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTK 487
VDGGAT NNLLMQIQADL+GSPV+RP DIETTALGAA+AA LA+G +KE +IF+SGE+ K
Sbjct: 427 VDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAARLAVGFWKEADIFESGEKAK 486
Query: 488 TSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
S F+P + E RKKK SWC+AVERTF+LADLS+
Sbjct: 487 NSKVFRPAMEEGIRKKKVASWCKAVERTFDLADLSI 522
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553277|ref|XP_002517681.1| glycerol kinase, putative [Ricinus communis] gi|223543313|gb|EEF44845.1| glycerol kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/523 (83%), Positives = 480/523 (91%), Gaps = 2/523 (0%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
MAK + FIGAIDQGTTSTRFIIY+ A IGSHQVEFTQFYP+AGWVEH+ MEILESV+
Sbjct: 1 MAKQEPAFIGAIDQGTTSTRFIIYNRHANSIGSHQVEFTQFYPQAGWVEHDAMEILESVK 60
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
VCMAKA+DKATADGHNVD LKAIGLTNQRETTV+WSKSTG PLYNAIVWMD RTSS+CR
Sbjct: 61 VCMAKAVDKATADGHNVDGLLKAIGLTNQRETTVIWSKSTGVPLYNAIVWMDVRTSSICR 120
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
KLEKELPGG+THF+E GLP+STYFSAVK+LW+MENVDAVKEAIKKGDALFGTID+WLIW
Sbjct: 121 KLEKELPGGRTHFIETCGLPLSTYFSAVKILWLMENVDAVKEAIKKGDALFGTIDSWLIW 180
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240
NLTGGV GGLHVTDVSNASRTMLMN+KTL+WDKPTL TLGIPAEILPKI+SNSE+IGKI
Sbjct: 181 NLTGGVKGGLHVTDVSNASRTMLMNIKTLEWDKPTLNTLGIPAEILPKIISNSEVIGKIA 240
Query: 241 KGWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTL 300
KGWP+TGIPI+GCLGDQHAAM+GQ CK+ EAKSTYGTGAFIL+NTG+ +V SKHGLL+TL
Sbjct: 241 KGWPVTGIPIAGCLGDQHAAMVGQGCKRDEAKSTYGTGAFILLNTGDHIVPSKHGLLTTL 300
Query: 301 AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAF 360
A+KLGPKAPTNYALEGSIAIAGAAVQWLRD L +ISSASEIEELA QV+STGGVYFVPAF
Sbjct: 301 AYKLGPKAPTNYALEGSIAIAGAAVQWLRDGLELISSASEIEELAKQVDSTGGVYFVPAF 360
Query: 361 NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDA 420
NGLFAPWWRDDARGVCIGITR+T+K+HIARAVLESMCFQVKDVLDSM KD EK KD
Sbjct: 361 NGLFAPWWRDDARGVCIGITRYTNKSHIARAVLESMCFQVKDVLDSMHKDREEKH--KDT 418
Query: 421 KSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIF 480
K EFLLRVDGGAT+NNLLMQIQADL+G PV+RP+DIETTALGAA+AAGLA+G++ E+EIF
Sbjct: 419 KREFLLRVDGGATINNLLMQIQADLVGHPVVRPSDIETTALGAAYAAGLAVGIWTEKEIF 478
Query: 481 DSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
SGE+ KT T F P L+EE RKKK ESWC+AVERTF LADLS+
Sbjct: 479 ASGEKAKTDTIFCPKLDEELRKKKVESWCKAVERTFGLADLSI 521
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134466|ref|XP_002327412.1| predicted protein [Populus trichocarpa] gi|222835966|gb|EEE74387.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/524 (82%), Positives = 478/524 (91%), Gaps = 6/524 (1%)
Query: 1 MAKAKEV-FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESV 59
MAK KE FIG+IDQGT+STRFIIYD +R +GSHQVEFTQ YP+AGWVEH+PMEILESV
Sbjct: 1 MAKTKEAAFIGSIDQGTSSTRFIIYDRNSRCVGSHQVEFTQLYPQAGWVEHDPMEILESV 60
Query: 60 RVCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVC 119
+VCMAKA+D A+A+GHNVD+ LKAIGLTNQRETT++WSKSTG PLYNAIVWMD RT+SVC
Sbjct: 61 KVCMAKAVDNASAEGHNVDAALKAIGLTNQRETTLVWSKSTGRPLYNAIVWMDVRTTSVC 120
Query: 120 RKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLI 179
R+LEKE+PGG+THF+E GLPISTYFSA+KL+W+MENVDAVKE IKK DALFGT+D+WLI
Sbjct: 121 RRLEKEMPGGRTHFVETCGLPISTYFSAMKLIWLMENVDAVKEGIKKKDALFGTVDSWLI 180
Query: 180 WNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI 239
WNLTGGV GGLHVTDVSNASRTMLMNLKTL+WDKPTLETL IPAEILPKI+SNSEIIGKI
Sbjct: 181 WNLTGGVKGGLHVTDVSNASRTMLMNLKTLEWDKPTLETLKIPAEILPKIISNSEIIGKI 240
Query: 240 GKGWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLST 299
+GWP+ G PI+GCLGDQHAAM+GQACKKGEAKSTYGTGAFIL NTGEEVV S HGLL+T
Sbjct: 241 TEGWPLVGFPIAGCLGDQHAAMVGQACKKGEAKSTYGTGAFILRNTGEEVVNSTHGLLTT 300
Query: 300 LAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPA 359
LAFKLG KAP NYALEGSIAIAGAAVQWLRDSLG+I SA EIEELA QV++TGGVYFVPA
Sbjct: 301 LAFKLGSKAPANYALEGSIAIAGAAVQWLRDSLGVIKSAGEIEELASQVDTTGGVYFVPA 360
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSM KDA
Sbjct: 361 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMHKDAA-----GS 415
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEI 479
+ EFLLRVDGGATVNNLLMQIQADLLGSPV+RPADIETTALGAA+AAGLA+GV+ EEEI
Sbjct: 416 EEGEFLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVWTEEEI 475
Query: 480 FDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
F SGE++K+ TTF+P LNEE RKKK +SW +AVERTF+LADLS+
Sbjct: 476 FASGEKSKSDTTFRPKLNEELRKKKVDSWFKAVERTFDLADLSI 519
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220142|ref|NP_178161.1| glycerol kinase [Arabidopsis thaliana] gi|6730733|gb|AAF27123.1|AC018849_11 putative glycerol kinase; 69575-71670 [Arabidopsis thaliana] gi|30314022|gb|AAO61418.1| glycerol kinase [Arabidopsis thaliana] gi|222423040|dbj|BAH19502.1| AT1G80460 [Arabidopsis thaliana] gi|332198286|gb|AEE36407.1| glycerol kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/516 (82%), Positives = 476/516 (92%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
FIG+IDQGTTSTRFIIYDH ARP+ SHQVEFTQFYPEAGWVEH+PMEILESV+VC+AKAL
Sbjct: 7 FIGSIDQGTTSTRFIIYDHDARPVASHQVEFTQFYPEAGWVEHDPMEILESVKVCIAKAL 66
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
DKATADGHNVD GLKAIGLT+QRETTV+WSKSTG PL+ AIVWMDARTSS+CR+LEKEL
Sbjct: 67 DKATADGHNVDGGLKAIGLTDQRETTVVWSKSTGLPLHKAIVWMDARTSSICRRLEKELS 126
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
GG++HF+E+ GLPISTYFSA+KLLW+MENVD VK+AIKKGDA+FGTIDTWLIWN+TGG+N
Sbjct: 127 GGRSHFVESCGLPISTYFSAMKLLWLMENVDDVKDAIKKGDAIFGTIDTWLIWNMTGGIN 186
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
GGLHVTDV+NASRTMLMNLKTL WD+ TL+TLGIPAEILPKIVSNSE+IG+I KGWPI G
Sbjct: 187 GGLHVTDVTNASRTMLMNLKTLSWDQDTLKTLGIPAEILPKIVSNSEVIGEICKGWPIPG 246
Query: 248 IPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPK 307
I I+GCLGDQHAAMLGQAC+KGEAKSTYGTGAFIL+NTGE +KS HGLL+TLA+KLGP+
Sbjct: 247 IKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVPIKSGHGLLTTLAYKLGPQ 306
Query: 308 APTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPW 367
A TNYALEGSIAIAGAAVQWLRDSLGII SASEIE+LA V+STGGVYFVPAFNGLFAPW
Sbjct: 307 AQTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVDSTGGVYFVPAFNGLFAPW 366
Query: 368 WRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLR 427
WR+DARGVCIGITRFT+K+HIARAVLESMCFQVKDVLDSM KDA EKG + + K EFLLR
Sbjct: 367 WREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNKDAGEKGSLNNGKGEFLLR 426
Query: 428 VDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTK 487
VDGGAT NNLLMQIQADL+GSPV+RP DIETTALGAA+AAGLA+G +KE +IF+SGE+ K
Sbjct: 427 VDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFWKEADIFESGEKAK 486
Query: 488 TSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
S F+P + E RKKK SWC+AVERTF+LADLS+
Sbjct: 487 NSKVFRPAMEEGIRKKKVASWCKAVERTFDLADLSI 522
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839893|ref|XP_002887828.1| At1g80460 [Arabidopsis lyrata subsp. lyrata] gi|297333669|gb|EFH64087.1| At1g80460 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/516 (82%), Positives = 477/516 (92%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
FIG+IDQGTTSTRFIIYDH AR + SHQVEFTQFYPEAGWVEH+PMEILESV+VC+AKAL
Sbjct: 7 FIGSIDQGTTSTRFIIYDHHARAVASHQVEFTQFYPEAGWVEHDPMEILESVKVCIAKAL 66
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
DKATADGHNVD GLKAIGLT+QRETTV+WSKSTG PL+ AIVWMDARTSS+CR+LEKEL
Sbjct: 67 DKATADGHNVDGGLKAIGLTDQRETTVVWSKSTGLPLHKAIVWMDARTSSICRRLEKELS 126
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
GG++HF+E+ GLPISTYFSA+KLLW+MENVD VK+AIKKGDA+FGTIDTWLIWN+TGGV+
Sbjct: 127 GGRSHFVESCGLPISTYFSAMKLLWLMENVDDVKDAIKKGDAIFGTIDTWLIWNMTGGVD 186
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
GGLHVTDV+NASRTMLMNLKTL+WD+ TL+TLGIPAEILPKIVSNSE+IG+I KGWPI G
Sbjct: 187 GGLHVTDVTNASRTMLMNLKTLNWDQDTLKTLGIPAEILPKIVSNSEVIGEICKGWPIPG 246
Query: 248 IPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPK 307
I I+GCLGDQHAAMLGQAC+KGEAKSTYGTGAFIL+NTGE +KS HGLL+TLA+KLGP+
Sbjct: 247 IKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVPIKSGHGLLTTLAYKLGPQ 306
Query: 308 APTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPW 367
A TNYALEGSIAIAGAAVQWLRDSLGII SASEIE+LA V+STGGVYFVPAFNGLFAPW
Sbjct: 307 AHTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVDSTGGVYFVPAFNGLFAPW 366
Query: 368 WRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLR 427
WR+DARGVCIGITRFT+K+HIARAVLESMCFQVKDVLDSM KDA EKG + + K EFLLR
Sbjct: 367 WREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNKDAGEKGSLDNEKGEFLLR 426
Query: 428 VDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTK 487
VDGGAT NNLLMQIQADL+GSPV+RP DIETTALGAA+AAGLA+G +KE +IF+SGE+ K
Sbjct: 427 VDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFWKEADIFESGEKAK 486
Query: 488 TSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
S F+P + EE RKKK SWC+AVERTF+LADLS+
Sbjct: 487 NSKVFRPAMEEETRKKKVASWCKAVERTFDLADLSI 522
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351724137|ref|NP_001237303.1| glycerol kinase [Glycine max] gi|40457263|gb|AAR86687.1| glycerol kinase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/519 (80%), Positives = 476/519 (91%), Gaps = 3/519 (0%)
Query: 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMA 64
++VF+GAIDQGT+S+RFIIYD + +G H VEFTQFYP+AGWVEH+PMEILESV+VC+A
Sbjct: 4 EDVFVGAIDQGTSSSRFIIYDAKTGVVGCHHVEFTQFYPQAGWVEHDPMEILESVKVCVA 63
Query: 65 KALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEK 124
KA+DKATADG NVD GLKAIGLTNQRETT+LWSKSTG PL+NAIVWMDARTSS+CR+LEK
Sbjct: 64 KAVDKATADGFNVDKGLKAIGLTNQRETTLLWSKSTGLPLHNAIVWMDARTSSICRRLEK 123
Query: 125 ELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTG 184
EL GG+ HF+E+ GLPISTYFSA+KLLW+MENVDAVKEAIKK DALFGTIDTWLIWNLTG
Sbjct: 124 ELSGGRNHFVESCGLPISTYFSALKLLWLMENVDAVKEAIKKKDALFGTIDTWLIWNLTG 183
Query: 185 GVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWP 244
GVNGGLHVTDVSNASRTMLMNLKTLDWD TL+TL IPAEILP IVSN+EIIG++G GWP
Sbjct: 184 GVNGGLHVTDVSNASRTMLMNLKTLDWDASTLKTLNIPAEILPNIVSNAEIIGEVGSGWP 243
Query: 245 ITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
I G+PI+GCLGDQHAAMLGQ+C+KGEAKSTYGTGAFIL+NTGE +++SKHGLLST+AFKL
Sbjct: 244 IAGVPIAGCLGDQHAAMLGQSCRKGEAKSTYGTGAFILLNTGEGIIQSKHGLLSTIAFKL 303
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
GPKAPTNYALEGS+AIAGAAVQWLRD LGIISSA+EIEE+ALQV STGGVYFVPAFNGLF
Sbjct: 304 GPKAPTNYALEGSVAIAGAAVQWLRDGLGIISSAAEIEEMALQVESTGGVYFVPAFNGLF 363
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
APWWR+DARGVCIGITRFTSK HIARAVLESMCFQVKDVLDSM KD+ E + K+EF
Sbjct: 364 APWWREDARGVCIGITRFTSKGHIARAVLESMCFQVKDVLDSMHKDSGES---ESQKTEF 420
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGE 484
LLRVDGGATVNNLLMQIQADL+G PVIRPADIETTALGAA+AAGLA G++KE+ IF++ E
Sbjct: 421 LLRVDGGATVNNLLMQIQADLVGCPVIRPADIETTALGAAYAAGLATGIWKEDFIFNTEE 480
Query: 485 RTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
+ K + F+PV+ EE RKKK +SWC+AV +TF+LADL++
Sbjct: 481 KLKNARVFRPVMTEEVRKKKVDSWCKAVSKTFDLADLAI 519
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468137|ref|XP_003604353.1| Glycerol kinase [Medicago truncatula] gi|355505408|gb|AES86550.1| Glycerol kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/519 (78%), Positives = 468/519 (90%), Gaps = 3/519 (0%)
Query: 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMA 64
++VFIGAIDQGT+S+RFIIYD A+PIGSHQVEFTQFYP+AGWVEH PMEILESV+VC+
Sbjct: 4 EDVFIGAIDQGTSSSRFIIYDKSAQPIGSHQVEFTQFYPQAGWVEHNPMEILESVKVCIT 63
Query: 65 KALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEK 124
KA+DKATA+G NVD GLKAIGLTNQRETT++WSKSTG PL+NA+VWMD RT+SVCR+LEK
Sbjct: 64 KAVDKATANGFNVDKGLKAIGLTNQRETTLVWSKSTGAPLHNALVWMDVRTTSVCRRLEK 123
Query: 125 ELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTG 184
EL GG+THF+E+ GLPISTYFSA+KLLW+MENVDAVKEAIKK DALFGTIDTWLIWNLTG
Sbjct: 124 ELSGGRTHFVESCGLPISTYFSAMKLLWLMENVDAVKEAIKKKDALFGTIDTWLIWNLTG 183
Query: 185 GVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWP 244
GV GGLHVTD SNASRTMLMNLKTL+WD+ TL+ L IPAEILPKI+SNSEIIG + GWP
Sbjct: 184 GVKGGLHVTDASNASRTMLMNLKTLNWDESTLKALQIPAEILPKIISNSEIIGNVSSGWP 243
Query: 245 ITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
+ GIPI+GCLGDQHAAMLGQAC+KGEAKSTYGTGAFIL+NTGE VVKS HGLLST+A+KL
Sbjct: 244 VAGIPIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEGVVKSNHGLLSTIAYKL 303
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
GP APTNYALEGS+AIAGAAVQWLRD LG+I++A +IE LAL+V S GGVYFVPAFNGLF
Sbjct: 304 GPNAPTNYALEGSVAIAGAAVQWLRDGLGLITTAKDIEALALEVESNGGVYFVPAFNGLF 363
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
APWWRDDARGVCIGITR+TSKAHIARAVLES+CFQVKDV+DSM KD+ G + K EF
Sbjct: 364 APWWRDDARGVCIGITRYTSKAHIARAVLESICFQVKDVIDSMHKDS---GADQSKKDEF 420
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGE 484
LLRVDGGATVNNLLMQ QADLL + VIRPADIETTALGAA+AAGLA+G++KE+ +FDS +
Sbjct: 421 LLRVDGGATVNNLLMQTQADLLATSVIRPADIETTALGAAYAAGLAVGIWKEDFVFDSKD 480
Query: 485 RTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
K ++ F+P++ EE RKKK +SW +AV R+F+LADLSL
Sbjct: 481 LLKNASVFRPLMVEEIRKKKVDSWGKAVSRSFDLADLSL 519
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | ||||||
| TAIR|locus:2198928 | 522 | NHO1 "nonhost resistance to P. | 0.998 | 1.0 | 0.797 | 3.6e-231 | |
| UNIPROTKB|D4A354 | 559 | Gk "Glycerol kinase" [Rattus n | 0.957 | 0.896 | 0.507 | 1.4e-135 | |
| RGD|70893 | 524 | Gk "glycerol kinase" [Rattus n | 0.956 | 0.954 | 0.506 | 1.8e-135 | |
| UNIPROTKB|Q63060 | 524 | Gk "Glycerol kinase" [Rattus n | 0.956 | 0.954 | 0.506 | 1.8e-135 | |
| ZFIN|ZDB-GENE-080204-72 | 534 | zgc:172295 "zgc:172295" [Danio | 0.948 | 0.928 | 0.511 | 1.2e-134 | |
| MGI|MGI:106594 | 559 | Gyk "glycerol kinase" [Mus mus | 0.957 | 0.896 | 0.503 | 1.6e-134 | |
| UNIPROTKB|E2QSE8 | 554 | E2QSE8 "Uncharacterized protei | 0.956 | 0.902 | 0.500 | 3e-133 | |
| UNIPROTKB|E2RNT9 | 524 | GK "Uncharacterized protein" [ | 0.956 | 0.954 | 0.500 | 3e-133 | |
| UNIPROTKB|P32189 | 559 | GK "Glycerol kinase" [Homo sap | 0.942 | 0.881 | 0.507 | 3.8e-133 | |
| DICTYBASE|DDB_G0280371 | 539 | DDB_G0280371 "glycerol kinase" | 0.760 | 0.738 | 0.491 | 9.7e-133 |
| TAIR|locus:2198928 NHO1 "nonhost resistance to P. s. phaseolicola 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2230 (790.1 bits), Expect = 3.6e-231, P = 3.6e-231
Identities = 417/523 (79%), Positives = 469/523 (89%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
MAK + FIG+IDQGTTSTRFIIYDH ARP+ SHQVEFTQFYPEAGWVEH+PMEILESV+
Sbjct: 1 MAK-ENGFIGSIDQGTTSTRFIIYDHDARPVASHQVEFTQFYPEAGWVEHDPMEILESVK 59
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
VC+AKALDKATADGHNVD GLKAIGLT+QRETTV+WSKSTG PL+ AIVWMDARTSS+CR
Sbjct: 60 VCIAKALDKATADGHNVDGGLKAIGLTDQRETTVVWSKSTGLPLHKAIVWMDARTSSICR 119
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
+LEKEL GG++HF+E+ GLPISTYFSA+KLLW+MENVD VK+AIKKGDA+FGTIDTWLIW
Sbjct: 120 RLEKELSGGRSHFVESCGLPISTYFSAMKLLWLMENVDDVKDAIKKGDAIFGTIDTWLIW 179
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240
N+TGG+NGGLHVTDV+NASRTMLMNLKTL WD+ TL+TLGIPAEILPKIVSNSE+IG+I
Sbjct: 180 NMTGGINGGLHVTDVTNASRTMLMNLKTLSWDQDTLKTLGIPAEILPKIVSNSEVIGEIC 239
Query: 241 KGWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTL 300
KGWPI GI I+GCLGDQHAAMLGQAC+KGEAKSTYGTGAFIL+NTGE +KS HGLL+TL
Sbjct: 240 KGWPIPGIKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVPIKSGHGLLTTL 299
Query: 301 AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAF 360
A+KLGP+A TNYALEGSIAIAGAAVQWLRDSLGII SASEIE+LA V+STGGVYFVPAF
Sbjct: 300 AYKLGPQAQTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVDSTGGVYFVPAF 359
Query: 361 NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDA 420
NGLFAPWWR+DARGVCIGITRFT+K+HIARAVLESMCFQVKDVLDSM KDA EKG + +
Sbjct: 360 NGLFAPWWREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNKDAGEKGSLNNG 419
Query: 421 KSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIF 480
K EFLLRVDGGAT NNLLMQIQADL+GSPV+RP DIETT +G +KE +IF
Sbjct: 420 KGEFLLRVDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFWKEADIF 479
Query: 481 DSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
+SGE+ K S F+P + E RKKK SWC+AVERTF+LADLS+
Sbjct: 480 ESGEKAKNSKVFRPAMEEGIRKKKVASWCKAVERTFDLADLSI 522
|
|
| UNIPROTKB|D4A354 Gk "Glycerol kinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
Identities = 269/530 (50%), Positives = 364/530 (68%)
Query: 1 MAKAKEV----FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEI 55
MA AK+ +GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EI
Sbjct: 1 MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEI 60
Query: 56 LESVRVCMAKALDKATADGH-NVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDA 113
L+SV C+ K +K G N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D
Sbjct: 61 LQSVYECIEKTCEKL---GQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDL 117
Query: 114 RTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGT 173
RT S KL K +PG GLP+STYFSAVKL W+++NV V+EA+++ ALFGT
Sbjct: 118 RTQSTVEKLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGT 177
Query: 174 IDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNS 233
ID+WLIW+LTGG+NGG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+S
Sbjct: 178 IDSWLIWSLTGGINGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSS 237
Query: 234 EIIG--KIG---KGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGE 287
EI G KI K + G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG
Sbjct: 238 EIYGLMKISHSLKAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGH 297
Query: 288 EVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQ 347
+ V S+HGLL+T+A+KLG P YALEGS+AIAGA ++WLRD+LGII S+ EIE+LA +
Sbjct: 298 KCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKE 357
Query: 348 VNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSM 407
V ++ G YFVPAF+GL+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M
Sbjct: 358 VGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAM 417
Query: 408 QKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXX 467
+D G+ S L+VDGG T N +LMQ+QAD+L PV++P+ ETT
Sbjct: 418 NRDC---GI---PLSH--LQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAA 469
Query: 468 XXX--IGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
+GV+ E T F+P +N E + + +W +AV ++
Sbjct: 470 GAAEGVGVWSLEP---EDLSAVTMERFEPQINAEESEIRYSTWKKAVMKS 516
|
|
| RGD|70893 Gk "glycerol kinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 266/525 (50%), Positives = 362/525 (68%)
Query: 1 MAKAKEV----FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEI 55
MA AK+ +GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EI
Sbjct: 1 MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEI 60
Query: 56 LESVRVCMAKALDKATADGH-NVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDA 113
L+SV C+ K +K G N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D
Sbjct: 61 LQSVYECIEKTCEKL---GQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDL 117
Query: 114 RTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGT 173
RT S KL K +PG GLP+STYFSAVKL W+++NV V+EA+++ ALFGT
Sbjct: 118 RTQSTVEKLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGT 177
Query: 174 IDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNS 233
ID+WLIW+LTGG+NGG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+S
Sbjct: 178 IDSWLIWSLTGGINGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSS 237
Query: 234 EIIGKIGKGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKS 292
EI G + G + G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG + V S
Sbjct: 238 EIYGLMKAG-ALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGHKCVFS 296
Query: 293 KHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTG 352
+HGLL+T+A+KLG P YALEGS+AIAGA ++WLRD+LGII S+ EIE+LA +V ++
Sbjct: 297 EHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVGTSY 356
Query: 353 GVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAV 412
G YFVPAF+ L+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M +D
Sbjct: 357 GCYFVPAFSALYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDC- 415
Query: 413 EKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXX-- 470
G+ S L+VDGG T N +LMQ+QAD+L PV++P+ ETT
Sbjct: 416 --GI---PLSH--LQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEG 468
Query: 471 IGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
+GV+ E T F+P +N E + + +W +AV ++
Sbjct: 469 VGVWSLEP---EDLSAVTMERFEPQINAEESEIRYSTWKKAVMKS 510
|
|
| UNIPROTKB|Q63060 Gk "Glycerol kinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 266/525 (50%), Positives = 362/525 (68%)
Query: 1 MAKAKEV----FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEI 55
MA AK+ +GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EI
Sbjct: 1 MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEI 60
Query: 56 LESVRVCMAKALDKATADGH-NVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDA 113
L+SV C+ K +K G N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D
Sbjct: 61 LQSVYECIEKTCEKL---GQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDL 117
Query: 114 RTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGT 173
RT S KL K +PG GLP+STYFSAVKL W+++NV V+EA+++ ALFGT
Sbjct: 118 RTQSTVEKLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGT 177
Query: 174 IDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNS 233
ID+WLIW+LTGG+NGG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+S
Sbjct: 178 IDSWLIWSLTGGINGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSS 237
Query: 234 EIIGKIGKGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKS 292
EI G + G + G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG + V S
Sbjct: 238 EIYGLMKAG-ALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGHKCVFS 296
Query: 293 KHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTG 352
+HGLL+T+A+KLG P YALEGS+AIAGA ++WLRD+LGII S+ EIE+LA +V ++
Sbjct: 297 EHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVGTSY 356
Query: 353 GVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAV 412
G YFVPAF+ L+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M +D
Sbjct: 357 GCYFVPAFSALYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDC- 415
Query: 413 EKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXX-- 470
G+ S L+VDGG T N +LMQ+QAD+L PV++P+ ETT
Sbjct: 416 --GI---PLSH--LQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEG 468
Query: 471 IGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
+GV+ E T F+P +N E + + +W +AV ++
Sbjct: 469 VGVWSLEP---EDLSAVTMERFEPQINAEESEIRYSTWKKAVMKS 510
|
|
| ZFIN|ZDB-GENE-080204-72 zgc:172295 "zgc:172295" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 263/514 (51%), Positives = 358/514 (69%)
Query: 9 IGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+ AIDQGT+STRF++++ + A + HQVE Q +P+ GWVE +P EIL+SV CM +
Sbjct: 18 VAAIDQGTSSTRFLVFNAKTAELLSHHQVEIKQSFPKEGWVEEDPKEILQSVYECMDRTC 77
Query: 68 DKATADGHNVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
+K T N+D S +KA+G+TNQRETT++W K TG PLYNAIVW+D RT S +L +
Sbjct: 78 EKLTQ--LNIDVSNIKAVGVTNQRETTLVWDKQTGEPLYNAIVWLDLRTQSTVERLINKT 135
Query: 127 PG-GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGG 185
PG K H + GLPISTYFSAVKL W+M+NV+ V EA+ A+FGT+D+WLIW LTGG
Sbjct: 136 PGKNKNHLKDKTGLPISTYFSAVKLRWLMDNVEKVHEAVLSHRAMFGTVDSWLIWCLTGG 195
Query: 186 VNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
NGG+H TDV+NASRTML N+ T+DWD IP ILPK+ S+SEI G + G P+
Sbjct: 196 KNGGVHCTDVTNASRTMLFNIHTMDWDPELCIYFDIPMGILPKVRSSSEIYGLMKSG-PL 254
Query: 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
TG+PISGCLGDQ AA++GQ C K G+AK+TYGTG F+L N G + V S HGLL+T+A+KL
Sbjct: 255 TGVPISGCLGDQSAALVGQMCFKDGQAKNTYGTGCFLLKNVGTKPVMSDHGLLTTVAYKL 314
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
G P YALEGS+AIAGA V+WL+D+LGII +++E+E+LA V ++ G YFVPAF+GL+
Sbjct: 315 GRDKPACYALEGSVAIAGAVVRWLKDNLGIIQTSTELEKLAADVGTSYGCYFVPAFSGLY 374
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
AP+W ARG+ G+T+FT+++H+A A LE++CFQ +++LD+M +D+ G+ S+
Sbjct: 375 APYWEPSARGIICGLTQFTNRSHLAFAALEAVCFQTREILDAMNQDS---GI---NLSQ- 427
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFDSGE 484
L+VDGG T N LLMQ+QAD+L PV++P+ ETT GV + +
Sbjct: 428 -LQVDGGMTSNRLLMQLQADILCIPVVKPSMPETTALGAAMAAGAAEGVSVWS--LNPED 484
Query: 485 RTK-TSTTFKPVLNEEFRKKKAESWCRAVERTFN 517
T+ TS F+P +N E + + W +AV+R N
Sbjct: 485 LTEVTSEKFEPQINPEESELRYARWKKAVQRAMN 518
|
|
| MGI|MGI:106594 Gyk "glycerol kinase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1318 (469.0 bits), Expect = 1.6e-134, P = 1.6e-134
Identities = 267/530 (50%), Positives = 363/530 (68%)
Query: 1 MAKAKEV----FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEI 55
MA AK+ +GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EI
Sbjct: 1 MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEI 60
Query: 56 LESVRVCMAKALDKATADGH-NVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDA 113
L+SV C+ K +K G N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D
Sbjct: 61 LQSVYECIEKTCEKL---GQLNIDISNIKAIGVSNQRETTVVWDKVTGEPLYNAVVWLDL 117
Query: 114 RTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGT 173
RT S L K +PG GLP+STYFSAVKL W+++NV V+EA+++ ALFGT
Sbjct: 118 RTQSTVENLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGT 177
Query: 174 IDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNS 233
ID+WLIW+LTGG++GG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+S
Sbjct: 178 IDSWLIWSLTGGIHGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSS 237
Query: 234 EIIG--KIG---KGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGE 287
EI G KI K + G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG
Sbjct: 238 EIYGLMKISHSLKAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGH 297
Query: 288 EVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQ 347
+ V S+HGLL+T+A+KLG P YALEGS+AIAGA ++WLRD+LGII S+ EIE+LA +
Sbjct: 298 KCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKE 357
Query: 348 VNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSM 407
V ++ G YFVPAF+GL+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M
Sbjct: 358 VGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAM 417
Query: 408 QKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXX 467
+D G+ S L+VDGG T N +LMQ+QAD+L PV++P+ ETT
Sbjct: 418 NRDC---GI---PLSH--LQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAA 469
Query: 468 XXX--IGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
+GV+ E T F+P +N E + + +W +AV ++
Sbjct: 470 GAAEGVGVWSLEP---EDLSAVTMERFEPQINAEESEIRYSTWKKAVMKS 516
|
|
| UNIPROTKB|E2QSE8 E2QSE8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
Identities = 263/525 (50%), Positives = 360/525 (68%)
Query: 1 MAKAKEV----FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEI 55
MA AK+ +GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EI
Sbjct: 1 MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSRTAELLSHHQVEIKQEFPREGWVEQDPKEI 60
Query: 56 LESVRVCMAKALDKATADGH-NVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDA 113
L+SV C+ K +K G N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D
Sbjct: 61 LQSVYECIEKTCEKL---GQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDL 117
Query: 114 RTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGT 173
RT S L K +PG GLP+STYFSAVKL W+++NV V++A+++ ALFGT
Sbjct: 118 RTQSTVENLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEDRALFGT 177
Query: 174 IDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNS 233
ID+WLIW+LTGG NGG+H TDV+NASRTML N+ +L+WDK E IP +ILP + S+S
Sbjct: 178 IDSWLIWSLTGGANGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFEIPMKILPNVRSSS 237
Query: 234 EIIGKIGKGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKS 292
EI G + G + G+PISGCLGDQ AA++GQ C + GEAK+TYGTG F+L NTG + V S
Sbjct: 238 EIYGLMKAG-ALEGVPISGCLGDQSAALVGQMCFQDGEAKNTYGTGCFLLCNTGRKCVFS 296
Query: 293 KHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTG 352
+HGLL+T+A+KLG P YALEGS+AIAGA ++WLRD+LGII ++ EIE+LA +V ++
Sbjct: 297 EHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVGTSY 356
Query: 353 GVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAV 412
G YFVPAF+GL+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M +D
Sbjct: 357 GCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDC- 415
Query: 413 EKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXX-- 470
G+ S L+VDGG T N +LMQ+QAD+L PV++P+ ETT
Sbjct: 416 --GI---PLSH--LQVDGGMTNNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEG 468
Query: 471 IGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
+GV+ E T F+P +N E + + +W +AV ++
Sbjct: 469 VGVWSLEP---EDLSAVTMERFEPQINAEESEIRYSTWKKAVMKS 510
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| UNIPROTKB|E2RNT9 GK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
Identities = 263/525 (50%), Positives = 360/525 (68%)
Query: 1 MAKAKEV----FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEI 55
MA AK+ +GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EI
Sbjct: 1 MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSRTAELLSHHQVEIKQEFPREGWVEQDPKEI 60
Query: 56 LESVRVCMAKALDKATADGH-NVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDA 113
L+SV C+ K +K G N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D
Sbjct: 61 LQSVYECIEKTCEKL---GQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDL 117
Query: 114 RTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGT 173
RT S L K +PG GLP+STYFSAVKL W+++NV V++A+++ ALFGT
Sbjct: 118 RTQSTVENLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEDRALFGT 177
Query: 174 IDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNS 233
ID+WLIW+LTGG NGG+H TDV+NASRTML N+ +L+WDK E IP +ILP + S+S
Sbjct: 178 IDSWLIWSLTGGANGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFEIPMKILPNVRSSS 237
Query: 234 EIIGKIGKGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKS 292
EI G + G + G+PISGCLGDQ AA++GQ C + GEAK+TYGTG F+L NTG + V S
Sbjct: 238 EIYGLMKAG-ALEGVPISGCLGDQSAALVGQMCFQDGEAKNTYGTGCFLLCNTGRKCVFS 296
Query: 293 KHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTG 352
+HGLL+T+A+KLG P YALEGS+AIAGA ++WLRD+LGII ++ EIE+LA +V ++
Sbjct: 297 EHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVGTSY 356
Query: 353 GVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAV 412
G YFVPAF+GL+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M +D
Sbjct: 357 GCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDC- 415
Query: 413 EKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXX-- 470
G+ S L+VDGG T N +LMQ+QAD+L PV++P+ ETT
Sbjct: 416 --GI---PLSH--LQVDGGMTNNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEG 468
Query: 471 IGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
+GV+ E T F+P +N E + + +W +AV ++
Sbjct: 469 VGVWSLEP---EDLSAVTMERFEPQINAEESEIRYSTWKKAVMKS 510
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| UNIPROTKB|P32189 GK "Glycerol kinase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 263/518 (50%), Positives = 356/518 (68%)
Query: 9 IGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+GA+DQGT+STRF++++ + A + HQVE Q +P GWVE +P EIL SV C+ K
Sbjct: 13 VGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEKTC 72
Query: 68 DKATADGH-NVD-SGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKE 125
+K G N+D S +KAIG++NQRETTV+W K TG PLYNA+VW+D RT S L K
Sbjct: 73 EKL---GQLNIDISNIKAIGVSNQRETTVVWDKITGEPLYNAVVWLDLRTQSTVESLSKR 129
Query: 126 LPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGG 185
+PG GLP+STYFSAVKL W+++NV V++A+++ ALFGTID+WLIW+LTGG
Sbjct: 130 IPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEKRALFGTIDSWLIWSLTGG 189
Query: 186 VNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG--KIG--- 240
VNGG+H TDV+NASRTML N+ +L+WDK E GIP EILP + S+SEI G KI
Sbjct: 190 VNGGVHCTDVTNASRTMLFNIHSLEWDKQLCEFFGIPMEILPNVRSSSEIYGLMKISHSV 249
Query: 241 KGWPITGIPISGCLGDQHAAMLGQACKK-GEAKSTYGTGAFILMNTGEEVVKSKHGLLST 299
K + G+PISGCLGDQ AA++GQ C + G+AK+TYGTG F+L NTG + V S HGLL+T
Sbjct: 250 KAGALEGVPISGCLGDQSAALVGQMCFQIGQAKNTYGTGCFLLCNTGHKCVFSDHGLLTT 309
Query: 300 LAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPA 359
+A+KLG P YALEGS+AIAGA ++WLRD+LGII ++ EIE+LA +V ++ G YFVPA
Sbjct: 310 VAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVGTSYGCYFVPA 369
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
F+GL+AP+W ARG+ G+T+FT+K HIA A LE++CFQ +++LD+M +D G+
Sbjct: 370 FSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDC---GI--- 423
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTXXXXXXXXXXX--IGVFKEE 477
S L+VDGG T N +LMQ+QAD+L PV++P+ ETT +GV+ E
Sbjct: 424 PLSH--LQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGVGVWSLE 481
Query: 478 EIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
T F+P +N E + + +W +AV ++
Sbjct: 482 P---EDLSAVTMERFEPQINAEESEIRYSTWKKAVMKS 516
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| DICTYBASE|DDB_G0280371 DDB_G0280371 "glycerol kinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1023 (365.2 bits), Expect = 9.7e-133, Sum P(2) = 9.7e-133
Identities = 209/425 (49%), Positives = 286/425 (67%)
Query: 106 NAIVWMDARTSSVCRKLEKELP-GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164
N I+ ++++++V + E K + E GLP+S+YFS +KL W+ +N ++V+EA
Sbjct: 129 NNIIDNNSKSTTVVDGAQGECKLESKNYLREKCGLPLSSYFSGLKLKWLFDNCESVREAY 188
Query: 165 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAE 224
+GD L GTID+WL+WNLTGG H+TDV+NASRTMLMNLKTL WDK + L +P E
Sbjct: 189 GRGDCLMGTIDSWLVWNLTGGK---CHITDVTNASRTMLMNLKTLSWDKELCDFLEVPIE 245
Query: 225 ILPKIVSNSEIIGKIGKG--------WPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTY 275
ILP I S+SEI G + G P+ GIPI+G LGDQ AAM+GQ C +KG+AK+TY
Sbjct: 246 ILPNIHSSSEIYGHVTMGDDEQQQQQHPLHGIPIAGVLGDQQAAMVGQMCFEKGQAKNTY 305
Query: 276 GTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGII 335
GTG F+L NTG ++V S++GLL+T+ ++ G +P YALEG +A+AG+ V+WL D++GI
Sbjct: 306 GTGCFLLYNTGNDIVHSRNGLLTTVCYQFGKDSPPIYALEGGVAVAGSGVRWLIDNMGIA 365
Query: 336 SSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLES 395
S+ EIE+LA V TGG+YFVPAF+GLFAP+WRDDARGV +G+T T++ HIAR+VLES
Sbjct: 366 ESSQEIEDLAKSVQDTGGMYFVPAFSGLFAPYWRDDARGVMVGLTHHTNRCHIARSVLES 425
Query: 396 MCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD 455
C Q +VLD+MQKD+ K V E LRVDGG NNLL+QIQ+DLLG PV++P
Sbjct: 426 TCLQTFEVLDAMQKDSGNKLV------E--LRVDGGMAKNNLLLQIQSDLLGLPVVKPIS 477
Query: 456 IETTXXXXXXXXXXXIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
+ETT GV+KE F G + F P L+E + +K + W +A+ ++
Sbjct: 478 LETTCFGAAFAAGIATGVWKETMQFKIGGK------FTPQLDENHKTQKLKEWKKAISKS 531
Query: 516 FNLAD 520
+ D
Sbjct: 532 LDWID 536
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A4FNR2 | GLPK_SACEN | 2, ., 7, ., 1, ., 3, 0 | 0.5166 | 0.9426 | 0.986 | yes | no |
| A8I8V7 | GLPK_AZOC5 | 2, ., 7, ., 1, ., 3, 0 | 0.5165 | 0.9426 | 0.9899 | yes | no |
| A5U920 | GLPK_MYCTA | 2, ., 7, ., 1, ., 3, 0 | 0.5105 | 0.9521 | 0.9632 | yes | no |
| B1MFT1 | GLPK_MYCA9 | 2, ., 7, ., 1, ., 3, 0 | 0.5038 | 0.9502 | 0.9861 | yes | no |
| A9WS93 | GLPK_RENSM | 2, ., 7, ., 1, ., 3, 0 | 0.5067 | 0.9426 | 0.9781 | yes | no |
| Q6AGR0 | GLPK_LEIXX | 2, ., 7, ., 1, ., 3, 0 | 0.5077 | 0.9483 | 0.9802 | yes | no |
| Q4ZPI7 | GLPK_PSEU2 | 2, ., 7, ., 1, ., 3, 0 | 0.4911 | 0.9216 | 0.9620 | yes | no |
| B8GC51 | GLPK_CHLAD | 2, ., 7, ., 1, ., 3, 0 | 0.5234 | 0.9369 | 0.9839 | yes | no |
| C5C1C4 | GLPK_BEUC1 | 2, ., 7, ., 1, ., 3, 0 | 0.5125 | 0.9426 | 0.9762 | yes | no |
| A1R6X6 | GLPK_ARTAT | 2, ., 7, ., 1, ., 3, 0 | 0.5029 | 0.9426 | 0.9781 | yes | no |
| Q48F01 | GLPK_PSE14 | 2, ., 7, ., 1, ., 3, 0 | 0.4911 | 0.9216 | 0.9620 | yes | no |
| A9WJ21 | GLPK_CHLAA | 2, ., 7, ., 1, ., 3, 0 | 0.5244 | 0.9388 | 0.9859 | yes | no |
| Q9CB81 | GLPK_MYCLE | 2, ., 7, ., 1, ., 3, 0 | 0.5019 | 0.9636 | 0.9921 | yes | no |
| O69664 | GLPK_MYCTU | 2, ., 7, ., 1, ., 3, 0 | 0.5105 | 0.9521 | 0.9632 | yes | no |
| Q828K5 | GLPK1_STRAW | 2, ., 7, ., 1, ., 3, 0 | 0.5107 | 0.9407 | 0.9609 | yes | no |
| B8H8T1 | GLPK_ARTCA | 2, ., 7, ., 1, ., 3, 0 | 0.5048 | 0.9426 | 0.9781 | yes | no |
| A4SPA7 | GLPK_AERS4 | 2, ., 7, ., 1, ., 3, 0 | 0.4710 | 0.9464 | 0.99 | yes | no |
| B7KN92 | GLPK_METC4 | 2, ., 7, ., 1, ., 3, 0 | 0.5127 | 0.9349 | 0.9760 | yes | no |
| A4T5Y1 | GLPK_MYCGI | 2, ., 7, ., 1, ., 3, 0 | 0.5143 | 0.9445 | 0.9782 | yes | no |
| Q8R8J4 | GLPK_THETN | 2, ., 7, ., 1, ., 3, 0 | 0.5 | 0.9407 | 0.9899 | yes | no |
| A5G146 | GLPK_ACICJ | 2, ., 7, ., 1, ., 3, 0 | 0.5155 | 0.9464 | 0.9919 | yes | no |
| Q14409 | GLPK3_HUMAN | 2, ., 7, ., 1, ., 3, 0 | 0.5165 | 0.9445 | 0.8933 | yes | no |
| Q5Z175 | GLPK_NOCFA | 2, ., 7, ., 1, ., 3, 0 | 0.4922 | 0.9311 | 0.9759 | yes | no |
| Q9X1E4 | GLPK2_THEMA | 2, ., 7, ., 1, ., 3, 0 | 0.5068 | 0.9311 | 0.9818 | yes | no |
| Q64516 | GLPK_MOUSE | 2, ., 7, ., 1, ., 3, 0 | 0.5028 | 0.9560 | 0.8944 | yes | no |
| B8DL62 | GLPK_DESVM | 2, ., 7, ., 1, ., 3, 0 | 0.5098 | 0.9292 | 0.9778 | yes | no |
| B0K643 | GLPK_THEPX | 2, ., 7, ., 1, ., 3, 0 | 0.4912 | 0.9388 | 0.9879 | yes | no |
| A0KIT3 | GLPK_AERHH | 2, ., 7, ., 1, ., 3, 0 | 0.4729 | 0.9464 | 0.99 | yes | no |
| A5VE44 | GLPK_SPHWW | 2, ., 7, ., 1, ., 3, 0 | 0.5048 | 0.9445 | 0.9705 | yes | no |
| B9LD34 | GLPK_CHLSY | 2, ., 7, ., 1, ., 3, 0 | 0.5244 | 0.9388 | 0.9859 | yes | no |
| A5CS23 | GLPK_CLAM3 | 2, ., 7, ., 1, ., 3, 0 | 0.5038 | 0.9521 | 0.9861 | yes | no |
| Q01V13 | GLPK_SOLUE | 2, ., 7, ., 1, ., 3, 0 | 0.5107 | 0.9330 | 0.9878 | yes | no |
| P32189 | GLPK_HUMAN | 2, ., 7, ., 1, ., 3, 0 | 0.5047 | 0.9445 | 0.8837 | yes | no |
| Q63060 | GLPK_RAT | 2, ., 7, ., 1, ., 3, 0 | 0.5047 | 0.9560 | 0.9541 | yes | no |
| B1ZGW7 | GLPK_METPB | 2, ., 7, ., 1, ., 3, 0 | 0.5186 | 0.9349 | 0.9760 | yes | no |
| A5UU55 | GLPK_ROSS1 | 2, ., 7, ., 1, ., 3, 0 | 0.5116 | 0.9445 | 0.9919 | yes | no |
| Q0IID9 | GLPK_BOVIN | 2, ., 7, ., 1, ., 3, 0 | 0.4962 | 0.9579 | 0.8962 | yes | no |
| A1TGD7 | GLPK_MYCVP | 2, ., 7, ., 1, ., 3, 0 | 0.5163 | 0.9521 | 0.9861 | yes | no |
| B2IE09 | GLPK_BEII9 | 2, ., 7, ., 1, ., 3, 0 | 0.5 | 0.9521 | 0.9822 | yes | no |
| B1LWN6 | GLPK_METRJ | 2, ., 7, ., 1, ., 3, 0 | 0.5117 | 0.9369 | 0.9780 | yes | no |
| Q9ADA7 | GLPK1_STRCO | 2, ., 7, ., 1, ., 3, 0 | 0.5068 | 0.9407 | 0.9609 | yes | no |
| Q87XL0 | GLPK_PSESM | 2, ., 7, ., 1, ., 3, 0 | 0.4911 | 0.9216 | 0.9620 | yes | no |
| A9W8T7 | GLPK_METEP | 2, ., 7, ., 1, ., 3, 0 | 0.5108 | 0.9349 | 0.9760 | yes | no |
| A6WXV2 | GLPK_OCHA4 | 2, ., 7, ., 1, ., 3, 0 | 0.5322 | 0.9369 | 0.9819 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1.30 | 0.946 |
| 3rd Layer | 2.7.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00003297001 | SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (522 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00018147001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (616 aa) | • | • | • | • | • | 0.995 | |||
 | GSVIVG00007751001 | SubName- Full=Chromosome undetermined scaffold_200, whole genome shotgun sequence; (518 aa) | • | • | 0.931 | ||||||
 | GSVIVG00036209001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (376 aa) | • | 0.915 | |||||||
 | GSVIVG00015673001 | SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (332 aa) | • | • | 0.908 | ||||||
 | GSVIVG00028143001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (523 aa) | • | 0.899 | |||||||
 | GSVIVG00026883001 | SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (469 aa) | • | 0.899 | |||||||
 | GSVIVG00021481001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (499 aa) | • | 0.899 | |||||||
 | GSVIVG00018448001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (487 aa) | • | 0.899 | |||||||
 | GSVIVG00000431001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa) | • | 0.792 | |||||||
 | GSVIVG00035815001 | SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (262 aa) | • | • | • | 0.783 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 523 | |||
| PLN02295 | 512 | PLN02295, PLN02295, glycerol kinase | 0.0 | |
| cd07796 | 503 | cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel | 0.0 | |
| TIGR01311 | 493 | TIGR01311, glycerol_kin, glycerol kinase | 0.0 | |
| cd07769 | 484 | cd07769, FGGY_GK, Glycerol kinases; a subfamily of | 0.0 | |
| PRK00047 | 498 | PRK00047, glpK, glycerol kinase; Provisional | 0.0 | |
| cd07786 | 486 | cd07786, FGGY_EcGK_like, Escherichia coli glycerol | 0.0 | |
| cd07792 | 504 | cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin | 0.0 | |
| PTZ00294 | 504 | PTZ00294, PTZ00294, glycerol kinase-like protein; | 0.0 | |
| COG0554 | 499 | COG0554, GlpK, Glycerol kinase [Energy production | 0.0 | |
| cd07789 | 495 | cd07789, FGGY_CsGK_like, Cellulomonas sp | 0.0 | |
| cd07795 | 496 | cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi | 0.0 | |
| cd10427 | 487 | cd10427, FGGY_GK_1, Uncharacterized subgroup; belo | 0.0 | |
| cd07791 | 484 | cd07791, FGGY_GK2_bacteria, bacterial glycerol kin | 1e-133 | |
| cd07793 | 504 | cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas | 1e-127 | |
| cd00366 | 435 | cd00366, FGGY, FGGY family of carbohydrate kinases | 1e-113 | |
| cd07794 | 470 | cd07794, FGGY_GK_like_proteobact, Proteobacterial | 1e-106 | |
| COG1070 | 502 | COG1070, XylB, Sugar (pentulose and hexulose) kina | 6e-84 | |
| cd07804 | 492 | cd07804, FGGY_XK_like_1, uncharacterized xylulose | 3e-83 | |
| pfam00370 | 245 | pfam00370, FGGY_N, FGGY family of carbohydrate kin | 1e-77 | |
| cd07808 | 482 | cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl | 7e-69 | |
| cd07803 | 482 | cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup | 1e-61 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 6e-58 | |
| cd07802 | 447 | cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil | 9e-54 | |
| cd07770 | 440 | cd07770, FGGY_GntK, Gluconate kinases; a subfamily | 1e-53 | |
| cd07805 | 514 | cd07805, FGGY_XK_like_2, uncharacterized xylulose | 3e-53 | |
| cd07779 | 488 | cd07779, FGGY_ygcE_like, uncharacterized ygcE-like | 6e-51 | |
| cd07774 | 430 | cd07774, FGGY_1, uncharacterized subgroup; belongs | 7e-51 | |
| pfam02782 | 193 | pfam02782, FGGY_C, FGGY family of carbohydrate kin | 2e-40 | |
| TIGR01314 | 505 | TIGR01314, gntK_FGGY, gluconate kinase, FGGY type | 6e-37 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 2e-35 | |
| cd07811 | 493 | cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup | 1e-34 | |
| cd07773 | 448 | cd07773, FGGY_FK, L-fuculose kinases; a subfamily | 3e-29 | |
| cd07783 | 484 | cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase | 6e-29 | |
| PRK10331 | 470 | PRK10331, PRK10331, L-fuculokinase; Provisional | 2e-27 | |
| cd07768 | 465 | cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd | 5e-27 | |
| cd07777 | 448 | cd07777, FGGY_SHK_like, sedoheptulokinase-like pro | 4e-24 | |
| PRK15027 | 484 | PRK15027, PRK15027, xylulokinase; Provisional | 9e-24 | |
| TIGR02628 | 465 | TIGR02628, fuculo_kin_coli, L-fuculokinase | 1e-23 | |
| cd07775 | 452 | cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf | 2e-23 | |
| COG1069 | 544 | COG1069, AraB, Ribulose kinase [Energy production | 5e-22 | |
| cd07810 | 490 | cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup | 5e-20 | |
| TIGR01315 | 541 | TIGR01315, 5C_CHO_kinase, FGGY-family pentulose ki | 4e-18 | |
| PRK10939 | 520 | PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P | 1e-13 | |
| cd07781 | 498 | cd07781, FGGY_RBK, Ribulokinases; belongs to the F | 4e-12 | |
| cd07782 | 536 | cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu | 6e-10 | |
| cd07771 | 440 | cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfam | 2e-09 | |
| cd07798 | 437 | cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-lik | 1e-08 | |
| PRK10939 | 520 | PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P | 3e-07 | |
| PRK04123 | 548 | PRK04123, PRK04123, ribulokinase; Provisional | 4e-06 | |
| TIGR01234 | 536 | TIGR01234, L-ribulokinase, L-ribulokinase | 2e-05 | |
| TIGR02627 | 454 | TIGR02627, rhamnulo_kin, rhamnulokinase | 2e-05 | |
| cd07782 | 536 | cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu | 4e-05 | |
| PRK10640 | 471 | PRK10640, rhaB, rhamnulokinase; Provisional | 0.002 |
| >gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase | Back alignment and domain information |
|---|
Score = 993 bits (2569), Expect = 0.0
Identities = 414/516 (80%), Positives = 464/516 (89%), Gaps = 4/516 (0%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
F+GAIDQGTTSTRFIIYD ARP+ SHQVEFTQ YP+AGWVEH+PMEILESV C+AKAL
Sbjct: 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKAL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+KA A GHNVDSGLKAIG+TNQRETTV WSKSTG PLYNAIVWMD+RTSS+CR+LEKEL
Sbjct: 61 EKAAAKGHNVDSGLKAIGITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKELS 120
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
GG+ HF+E GLPISTYFSA KLLW++ENVDAVKEA+K GDALFGTID+WLIWNLTGG +
Sbjct: 121 GGRKHFVETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGGAS 180
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
GG+HVTDV+NASRTMLMNLKTLDWDKPTLE LGIPAEILPKIVSNSE+IG I KGWP+ G
Sbjct: 181 GGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKGWPLAG 240
Query: 248 IPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPK 307
+PI+GCLGDQHAAMLGQ C+ GEAKSTYGTG FIL+NTGEEVV SKHGLL+T+A+KLGP
Sbjct: 241 VPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPD 300
Query: 308 APTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPW 367
APTNYALEGS+AIAGAAVQWLRD+LGII SASEIE LA V+ TGGVYFVPAF+GLFAP
Sbjct: 301 APTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPR 360
Query: 368 WRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLR 427
WRDDARGVC+GITRFT+KAHIARAVLESMCFQVKDVLD+M+KDA G K K FLLR
Sbjct: 361 WRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKDA---GEEKSHKGLFLLR 417
Query: 428 VDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTK 487
VDGGAT NNLLMQIQADLLGSPV+RPADIETTALGAA+AAGLA+G++ EEEIF S E+ K
Sbjct: 418 VDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFAS-EKWK 476
Query: 488 TSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523
+TTF+P L+EE R K+ SWC+AVER+F+LADLS+
Sbjct: 477 NTTTFRPKLDEEERAKRYASWCKAVERSFDLADLSI 512
|
Length = 512 |
| >gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 912 bits (2359), Expect = 0.0
Identities = 375/504 (74%), Positives = 432/504 (85%), Gaps = 3/504 (0%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+IG+IDQGTTSTRFIIYD A+ + SHQVEFTQ YP+AGWVEH+PMEILE+V+ CM AL
Sbjct: 1 YIGSIDQGTTSTRFIIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCMEGAL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA A G +V GLKAIG+TNQRETTV+WS+STG PLYNAIVWMDARTSS+CR+LEKELP
Sbjct: 61 AKAKAKGLDVLDGLKAIGITNQRETTVVWSRSTGLPLYNAIVWMDARTSSICRRLEKELP 120
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G HF+E GLPISTYFSA KLLW+ME+VD VK A+K GDALFGTIDTWLIWNLTGG+N
Sbjct: 121 EGGRHFVETCGLPISTYFSATKLLWLMEHVDEVKAAVKSGDALFGTIDTWLIWNLTGGIN 180
Query: 188 G--GLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
G G+HVTD +NA+RTMLM+LKTL W +PTL+ LGIP ILPKI+SN E+IG+I +GWP
Sbjct: 181 GEEGVHVTDCTNAARTMLMDLKTLQWHEPTLKDLGIPRSILPKIISNVEVIGEISEGWPF 240
Query: 246 TGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
GI ++GCLGDQHAAMLGQ C+KGEAKSTYGTG FIL+NTGE+++ S HGLL+T+A+KLG
Sbjct: 241 AGIQLAGCLGDQHAAMLGQQCRKGEAKSTYGTGCFILLNTGEQIIPSNHGLLTTIAYKLG 300
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
P APTNYALEGSIAIAGAAVQWLRDSLGII SASEIE LA VN+TGGVYFVPAFNGLFA
Sbjct: 301 PDAPTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIESLAKTVNNTGGVYFVPAFNGLFA 360
Query: 366 PWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL 425
PWWRDDARGVCIGITR+T+KAHIARAVLESMCFQVK+VL SM+ DA EFL
Sbjct: 361 PWWRDDARGVCIGITRYTNKAHIARAVLESMCFQVKEVLTSMKADAGNIEANT-VGGEFL 419
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485
LRVDGGATVNNLLMQIQADL+GSPV+RP DIETTALGAA+AAGLA+GV+ EE+IF+SG +
Sbjct: 420 LRVDGGATVNNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGVWTEEQIFESGAK 479
Query: 486 TKTSTTFKPVLNEEFRKKKAESWC 509
+ T F P + ++ RKK+ SWC
Sbjct: 480 QEAPTVFHPQITDDERKKRCLSWC 503
|
This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503 |
| >gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase | Back alignment and domain information |
|---|
Score = 804 bits (2079), Expect = 0.0
Identities = 291/512 (56%), Positives = 362/512 (70%), Gaps = 23/512 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I AIDQGTTS+R I++D + HQ EFTQ +P+ GWVEH+PMEI ESV C+A+AL
Sbjct: 2 YILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEAL 61
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA ++ AIG+TNQRETTV+W K+TG PLYNAIVW D RT+S+C +L+ E
Sbjct: 62 AKAGIKPDDI----AAIGITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGY 117
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G E GLP+ YFSA KL W+++NV V+EA ++G+ LFGTIDTWLIWNLTGG
Sbjct: 118 G--EFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGG-- 173
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
+HVTDV+NASRTML N+ TLDWD LE GIP EILP++ S+SE+ G G
Sbjct: 174 -KVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGAE 232
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
IPI+G LGDQ AA+ GQAC K G+AK+TYGTG F+LMNTGE+ V SKHGLL+T+A++LG
Sbjct: 233 IPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGG 292
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
K P YALEGS+ +AGAAVQWLRD+L +I A+E E LA V GGVYFVPAF GL AP
Sbjct: 293 KKP-VYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAP 351
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
+W DARG G+TR T+KAHIARA LE++ FQ +DVL++M+KDA + L
Sbjct: 352 YWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITK--------L 403
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFK-EEEIFDSGER 485
RVDGG T NNLLMQ QAD+LG PV+RP ETTALGAA+AAGLA+G +K EEI
Sbjct: 404 RVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEIEALWRV 463
Query: 486 TKTSTTFKPVLNEEFRKKKAESWCRAVERTFN 517
K TF+P ++EE R+ + W AV+R+
Sbjct: 464 EK---TFEPEMDEEEREARYAGWKEAVKRSLG 492
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493 |
| >gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 766 bits (1981), Expect = 0.0
Identities = 291/504 (57%), Positives = 359/504 (71%), Gaps = 22/504 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I AIDQGTTSTRFII+D + SHQVE Q YP+ GWVEH+P EI +V C+ +AL
Sbjct: 1 YILAIDQGTTSTRFIIFDRDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEAL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
K + KAIG+TNQRETTV W K TG PLYNAIVW D RTS + +L+ +
Sbjct: 61 KKLRISPEQI----KAIGITNQRETTVAWDKETGKPLYNAIVWQDTRTSEIVEELKAD-- 114
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G +F E GLPIS YFSA+KL W++ENV V+EAI++G LFGTIDTWLIWNLTGG
Sbjct: 115 GNADYFREKTGLPISPYFSALKLRWLLENVPEVREAIEEGTLLFGTIDTWLIWNLTGGKV 174
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKG-WPIT 246
HVTDV+NASRTMLMNL TL WD+ LE GIP+E LP+I S+SE+ G +G
Sbjct: 175 ---HVTDVTNASRTMLMNLHTLQWDEELLELFGIPSECLPEIRSSSEVYGYTNEGGLLGE 231
Query: 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
GIPI+GCLGDQ AA+ GQ C + G+AK TYGTG F+LMNTGE+ V S+HGLL+T+A+KLG
Sbjct: 232 GIPIAGCLGDQQAALFGQGCFEAGDAKCTYGTGCFLLMNTGEKPVISEHGLLTTIAYKLG 291
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
P YALEGSIA+AG+AVQWLRD+L IISSASE+EELA V TGGVYFVPAF+GLFA
Sbjct: 292 P-GKPVYALEGSIAVAGSAVQWLRDNLKIISSASEVEELAASVEDTGGVYFVPAFSGLFA 350
Query: 366 PWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL 425
P+W DARG +G+TR T++AHI RA LE++ FQ +DVLD+M+KD+ K +
Sbjct: 351 PYWDPDARGTILGLTRGTTRAHIVRAALEAIAFQTRDVLDAMEKDSGIKL--------SV 402
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485
LRVDGG T NNLLMQ QAD+LG PV RP ETTALGAA+ AGLA+G + + + +
Sbjct: 403 LRVDGGLTKNNLLMQFQADILGVPVERPETAETTALGAAYLAGLAVGFWSDLD--ELQAL 460
Query: 486 TKTSTTFKPVLNEEFRKKKAESWC 509
K+ F P ++ R+K+ + W
Sbjct: 461 RKSDRVFSPTMDASEREKRYKGWK 484
|
This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484 |
| >gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional | Back alignment and domain information |
|---|
Score = 735 bits (1900), Expect = 0.0
Identities = 266/520 (51%), Positives = 347/520 (66%), Gaps = 27/520 (5%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
M K +I A+DQGTTS+R II+DH + Q EFTQ +P+ GWVEH+P EI S
Sbjct: 1 MMMKK--YILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQL 58
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
+A+AL KA + AIG+TNQRETTV+W K TG P+YNAIVW D RT+ +C
Sbjct: 59 SVIAEALAKAGISPDQI----AAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICE 114
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
+L+++ G + + E GL I YFS K+ W+++NV+ +E +KG+ LFGTIDTWL+W
Sbjct: 115 ELKRD--GYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVW 172
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240
LTGG +HVTD +NASRTML N+ TLDWD LE L IP +LP++ +SE+ GK
Sbjct: 173 KLTGG---KVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTN 229
Query: 241 KGWPITG-IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLS 298
G +PI+G GDQ AA+ GQ C + G AK+TYGTG F+LMNTGE+ VKS++GLL+
Sbjct: 230 PYGFFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLT 289
Query: 299 TLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVP 358
T+A+ + K YALEGSI +AG+A+QWLRD L IIS AS+ E LA +V GVY VP
Sbjct: 290 TIAWGIDGKV--VYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVEDNDGVYVVP 347
Query: 359 AFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIK 418
AF GL AP+W DARG G+TR T+K HI RA LES+ +Q +DVLD+MQ D+ + +K
Sbjct: 348 AFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQADSGIR--LK 405
Query: 419 DAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKE-E 477
LRVDGGA NN LMQ QAD+LG PV RP ETTALGAA+ AGLA+G +K+ +
Sbjct: 406 ------ELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLD 459
Query: 478 EIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFN 517
E+ E+ K F+P ++EE R+K W +AV+RT
Sbjct: 460 EL---KEQWKIDRRFEPQMDEEEREKLYAGWKKAVKRTLA 496
|
Length = 498 |
| >gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 718 bits (1855), Expect = 0.0
Identities = 261/507 (51%), Positives = 342/507 (67%), Gaps = 22/507 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I AIDQGTTS+R I++DH + Q EFTQ YP+ GWVEH+P EI ES +AL
Sbjct: 1 YILAIDQGTTSSRAILFDHDGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREAL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA ++ AIG+TNQRETTV+W + TG P+YNAIVW D RT+ +C +L+ E
Sbjct: 61 AKAGIRASDI----AAIGITNQRETTVVWDRETGKPVYNAIVWQDRRTADICEELKAE-- 114
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + E GL + YFSA K+ W+++NV +E ++G+ FGTID+WLIW LTGG
Sbjct: 115 GHEEMIREKTGLVLDPYFSATKIRWILDNVPGARERAERGELAFGTIDSWLIWKLTGG-- 172
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
+H TDV+NASRTML N+ TL+WD LE GIPA +LP++ +SE+ G
Sbjct: 173 -KVHATDVTNASRTMLFNIHTLEWDDELLELFGIPASMLPEVKPSSEVFGYTDPDLLGAE 231
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
IPI+G GDQ AA+ GQAC + G AK+TYGTG F+LMNTGE+ V+SK+GLL+T+A++LG
Sbjct: 232 IPIAGIAGDQQAALFGQACFEPGMAKNTYGTGCFMLMNTGEKPVRSKNGLLTTIAWQLGG 291
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
K YALEGSI IAGAAVQWLRD LG+I SA+E E LA V GGVYFVPAF GL AP
Sbjct: 292 K--VTYALEGSIFIAGAAVQWLRDGLGLIESAAETEALARSVPDNGGVYFVPAFTGLGAP 349
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
+W DARG G+TR T++AHIARA LES+ +Q +D+L++M+ D+ K L
Sbjct: 350 YWDPDARGAIFGLTRGTTRAHIARAALESIAYQTRDLLEAMEADSG-----IPLKE---L 401
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERT 486
RVDGGA+ N+ LMQ QAD+LG PV RP ETTALGAA+ AGLA+G++K + + +
Sbjct: 402 RVDGGASANDFLMQFQADILGVPVERPKVTETTALGAAYLAGLAVGLWKSLD--ELAKLW 459
Query: 487 KTSTTFKPVLNEEFRKKKAESWCRAVE 513
+ F+P ++EE R+ W +AV+
Sbjct: 460 QVDRRFEPSMSEEEREALYAGWKKAVK 486
|
This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486 |
| >gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 712 bits (1841), Expect = 0.0
Identities = 289/514 (56%), Positives = 380/514 (73%), Gaps = 16/514 (3%)
Query: 8 FIGAIDQGTTSTRFIIYD-HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKA 66
+GAIDQGT+STRF++++ A + SHQVE Q +P+ GWVE +P EIL SV C+ K
Sbjct: 2 LVGAIDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWVEQDPKEILNSVYECIEKT 61
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
K +V +KAIG+TNQRETTV+W K TG PLYNAIVW+D RT S KL ++
Sbjct: 62 CKKLKELNIDVSD-IKAIGITNQRETTVVWDKYTGEPLYNAIVWLDIRTQSTVDKLLAKI 120
Query: 127 PGGKTHFLEAV-GLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGG 185
P ++L+++ GLPISTYFSAVKL W+++NV V++A+++ LFGT+D+WLIWNLTGG
Sbjct: 121 PDKNKNYLKSICGLPISTYFSAVKLRWLLDNVPEVRKAVEEKRCLFGTVDSWLIWNLTGG 180
Query: 186 VNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245
NGG+H+TDV+NASRTMLMN++TL+WD + GIP EILP+I S+SEI G I +G P+
Sbjct: 181 PNGGVHITDVTNASRTMLMNIETLEWDPELCKFFGIPMEILPEIRSSSEIYGYIKEG-PL 239
Query: 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
GIPISG LGDQ AA++GQ C KKG+AK+TYGTG F+L NTG + V S HGLL+T+A+KL
Sbjct: 240 EGIPISGILGDQQAALVGQMCFKKGQAKNTYGTGCFLLYNTGTKPVFSTHGLLTTVAYKL 299
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF 364
GP PT YALEGS+AIAGAA++WLRD+LGII ++S+IE+LA +V ++G VYFVPAF+GL+
Sbjct: 300 GPDKPTIYALEGSVAIAGAAIRWLRDNLGIIKTSSDIEKLASEVGTSGDVYFVPAFSGLY 359
Query: 365 APWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424
AP+WR DARG+ G+T+FT+K HIARA LE++CFQ +++L++M KD I +K
Sbjct: 360 APYWRKDARGIICGLTQFTTKNHIARAALEAVCFQTREILEAMNKDC----GIPLSK--- 412
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGE 484
L+VDGG T NNLLMQ+QAD+LG PV+RP+ ETTALGAA AAG A GV E + +
Sbjct: 413 -LQVDGGMTSNNLLMQLQADILGIPVVRPSMPETTALGAAMAAGAAKGV--EVWSLEPED 469
Query: 485 RTK-TSTTFKPVLNEEFRKKKAESWCRAVERTFN 517
+ T TF P + EE R + W AV+R+
Sbjct: 470 LSAVTFETFLPSITEEERNIRYAKWKMAVQRSLG 503
|
This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504 |
| >gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 703 bits (1816), Expect = 0.0
Identities = 289/516 (56%), Positives = 362/516 (70%), Gaps = 18/516 (3%)
Query: 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALD 68
IG+IDQGTTSTRFII+D + + SHQ+ Q P GW+EH+P EIL +V CM +A+
Sbjct: 4 IGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIK 63
Query: 69 KATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPG 128
K G + +KAIG+TNQRET V W K TG PLYNAIVW+D RT + +L K+ G
Sbjct: 64 KLREKGPSFK--IKAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKY-G 120
Query: 129 GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNG 188
G F + GLPISTYFSA K+ WM+ENV AVK+A+K+G LFGTIDTWLIWNLTGG
Sbjct: 121 GSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTGG--- 177
Query: 189 GLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI--GKGWPIT 246
HVTDV+NASRT LMN+KTL WD+ L GIP E LP+I S+SE G I +
Sbjct: 178 KSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAVPLLE 237
Query: 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
G+PI+GC+GDQ AA++G C +KG+AK+TYGTG F+LMNTG E+V SKHGLL+T+ ++LG
Sbjct: 238 GVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLG 297
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
P PT YALEGSIA+AGA V+WLRD++G+IS SEIE+LA V TGGV FVPAF+GLFA
Sbjct: 298 PNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFA 357
Query: 366 PWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL 425
P+WR DARG +G+T T++AHI RA LE++ Q DV++SM+KDA G+ ++
Sbjct: 358 PYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEKDA---GIELNS----- 409
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485
LRVDGG T N LLMQ QAD+LG ++ P ETTALGAA AGLA+GV+K E R
Sbjct: 410 LRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVKKLIR 469
Query: 486 TKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADL 521
S TF P ++ E RK + W +AVER+ A L
Sbjct: 470 RSNS-TFSPQMSAEERKAIYKEWNKAVERSLKWAKL 504
|
Length = 504 |
| >gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 693 bits (1791), Expect = 0.0
Identities = 266/510 (52%), Positives = 347/510 (68%), Gaps = 24/510 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I AIDQGTTS+R I++D + Q EFTQ YP+ GWVEH+P+EI SVR + +AL
Sbjct: 6 YILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEAL 65
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA + AIG+TNQRETTV+W K TG P+YNAIVW D RT+ +C +L+ +
Sbjct: 66 AKAGIKPGEIA----AIGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD-- 119
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + E GL + YFSA K+ W+++NV +E +KG+ LFGTIDTWLIW LTGG
Sbjct: 120 GYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWKLTGG-- 177
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
+HVTD SNASRTML N+ +L+WD LE LGIP +LP++ +SEI G G G+
Sbjct: 178 -KVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLGAE 236
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
+PI+G GDQ AA+ GQ C + G AK+TYGTG F+LMNTGE+ V+S++GLL+T+A+ L
Sbjct: 237 VPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDG 296
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
K YALEGSI +AGAAVQWLRD LG+I AS+ EELA V GGVYFVPAF GL AP
Sbjct: 297 K--VTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAP 354
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDA-VEKGVIKDAKSEFL 425
+W DARG G+TR T+KAHIARA LES+ +Q +DVL++M+KD+ ++
Sbjct: 355 YWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTR--------- 405
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485
LRVDGGA+ NN LMQ QAD+LG PV RP +ETTALGAA+ AGLA+G +K+ +
Sbjct: 406 LRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELAELWP 465
Query: 486 TKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
F+P ++EE R++ W +AV+R+
Sbjct: 466 LD--KEFEPGMDEEEREELYAGWKKAVKRS 493
|
Length = 499 |
| >gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp | Back alignment and domain information |
|---|
Score = 682 bits (1761), Expect = 0.0
Identities = 270/511 (52%), Positives = 358/511 (70%), Gaps = 18/511 (3%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ AIDQGTTSTR I++DH R + Q E Q +P GWVEH+P EI E+ R ++ AL
Sbjct: 1 YVAAIDQGTTSTRCIVFDHHGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGAL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA + A+G+TNQRETTV+W ++TG P+YNAIVW D RT +CR+L +
Sbjct: 61 AKAGLTPE----DIAAVGITNQRETTVVWDRATGRPVYNAIVWQDTRTDEICRELAAD-- 114
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G+ F GLP++TYFS K+ W+++NV +E +KGD LFGT+DTWL+WNLTGG
Sbjct: 115 EGQQRFRARTGLPLATYFSGPKIRWILDNVPGARERAEKGDLLFGTMDTWLLWNLTGGPR 174
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
GG+HVTDV+NASRTMLM+L+TLDWD L GIP +LP+I +SE+ G + + G
Sbjct: 175 GGVHVTDVTNASRTMLMDLETLDWDPELLAAFGIPRSMLPEIRPSSEVYGTVRGRGILAG 234
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
+PI+G LGDQ AA+ GQ C + GEAK+TYGTG F+L+NTG E V+SKHGLL+T+A++ G
Sbjct: 235 VPIAGVLGDQQAALFGQTCFEAGEAKNTYGTGCFLLLNTGTEPVRSKHGLLTTVAYQFG- 293
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
P YALEGSIA+ G+ VQWLRD+LG+I +A+EIE LA V GGVYFVPAF+GLFAP
Sbjct: 294 GQPAVYALEGSIAVTGSLVQWLRDNLGLIKTAAEIETLARTVEDNGGVYFVPAFSGLFAP 353
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
+WR DARGV +G+TR+ +K HIARAVLE+ FQ ++V+D+M D+ GV +S L
Sbjct: 354 YWRSDARGVIVGLTRYVNKGHIARAVLEATAFQTREVVDAMNADS---GV--ALES---L 405
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERT 486
RVDGG N LLMQ QAD+LG PV+RP ETTALGAA+AAGLA+G +K+ + +
Sbjct: 406 RVDGGMVANELLMQFQADILGVPVVRPKVAETTALGAAYAAGLAVGFWKDTD--ELRSNW 463
Query: 487 KTSTTFKPVLNEEFRKKKAESWCRAVERTFN 517
T+ P ++ R++ + W +AV RTF+
Sbjct: 464 SEDKTWTPSMDPAERERLYDGWKKAVTRTFD 494
|
glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495 |
| >gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 650 bits (1679), Expect = 0.0
Identities = 275/503 (54%), Positives = 356/503 (70%), Gaps = 13/503 (2%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+G+IDQGTTSTRFI+++ +P+ SHQ+EF+Q YP GW EH+P EI+ SV C+A AL
Sbjct: 3 LVGSIDQGTTSTRFILFNRDGQPVASHQIEFSQIYPHPGWHEHDPEEIVSSVVQCIASAL 62
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
G + +K IG+TNQRETTV+W + TG PLYNAIVW D RT+S R+LE +L
Sbjct: 63 KSLETSGFSKYD-VKVIGITNQRETTVVWDRETGKPLYNAIVWNDTRTTSTVRELESKLK 121
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G E GLP+STYFS+VKL WM++NV VK+A GD FGT+D+WLI+NLTGG
Sbjct: 122 KGAEALREICGLPLSTYFSSVKLRWMLDNVPEVKKAYDDGDLAFGTVDSWLIYNLTGGPK 181
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI-PAEILPKIVSNSEIIGKIGKGWPIT 246
+HVTDV+NASRTM MNL TL +D+ L+ GI ILP+IVS+SE+ G I G P+
Sbjct: 182 TKVHVTDVTNASRTMFMNLATLKYDQKLLDFFGIDKKIILPEIVSSSEVYGNIAYG-PLE 240
Query: 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
G+PI+GCLGDQ AA++GQ GEAK+TYGTG F+L NTGE+ V SKHGLL+T+A++ G
Sbjct: 241 GVPIAGCLGDQSAALVGQKAFTPGEAKNTYGTGCFLLYNTGEKPVISKHGLLTTVAYQFG 300
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
P A YALEGSIA+AG+AV+WLRD+LG+IS A +I ELA QV +GGV FV AF+GLFA
Sbjct: 301 PGAKPVYALEGSIAVAGSAVKWLRDNLGLISKAEDIGELASQVPDSGGVVFVTAFSGLFA 360
Query: 366 PWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL 425
P+W DDARG GIT++T+K+HIARA LE++CFQ + +LD+M KD+
Sbjct: 361 PYWDDDARGTIFGITQYTTKSHIARAALEAVCFQTRAILDAMSKDSGS------PLKA-- 412
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485
L VDGG + +++ MQIQAD+LG PV RP E+TALGAA AAG A+G+F +
Sbjct: 413 LAVDGGMSNSDVAMQIQADILGIPVERPEMRESTALGAAIAAGFAVGLFGWDLTL-KDIN 471
Query: 486 TKTSTTFKPVLNEEFRKKKAESW 508
T+ +T FKP ++E R K + W
Sbjct: 472 TEGNTVFKPKTDDEERAKMWKQW 494
|
This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496 |
| >gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 520 bits (1341), Expect = 0.0
Identities = 229/510 (44%), Positives = 312/510 (61%), Gaps = 25/510 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I AIDQ T T+ +++D + + Q YPE GWVEH+P EI E+ + L
Sbjct: 1 YILAIDQSTQGTKALLFDEKGELLARADKSHRQIYPENGWVEHDPEEIYENTLQAVKDLL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
++ D + + +G+TNQRETTV W K TG PLYNAIVW R ++C +L++E
Sbjct: 61 EEFGIDPAEI----EGLGITNQRETTVAWDKRTGKPLYNAIVWQCQRGKAICERLKEE-- 114
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + GL I YFSA K+ W++ENV+ V+EA KGD FGTID+WLI+ LT G +
Sbjct: 115 GYAELIKQKTGLKIDPYFSASKMAWLLENVEGVREAASKGDLAFGTIDSWLIYKLTNGKS 174
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG-KGWPIT 246
TD SNASRT L N+ TLDWD+ E GIP +ILP+++ + + G G
Sbjct: 175 ---FKTDYSNASRTQLFNIHTLDWDEELCELFGIPRKILPEVLDSDSVFGYTDLNGILPH 231
Query: 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
IPI G LGD HAA+ GQ C + G K TYGTG+ ++MN GE+ V S HGL+++LA+ +G
Sbjct: 232 PIPIHGVLGDSHAALFGQGCFEPGMIKVTYGTGSSVMMNIGEKPVLSDHGLVTSLAWSVG 291
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
K Y LEG+I GA + WL+D LG+I +E EELAL N GVY VPAF GL A
Sbjct: 292 GKV--TYVLEGNINYTGATITWLKDKLGLIQDPAETEELALSANPNDGVYLVPAFTGLGA 349
Query: 366 PWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL 425
P+W+ DA+ +G+TR T KA + RA LES+ +Q+ DV+D+M++D+ SE
Sbjct: 350 PYWKSDAKAAIVGMTRTTGKAELVRAALESIAYQINDVIDAMEEDS------GIEISE-- 401
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485
LRVDGG T N LMQ QAD+L +PV E +ALGAA+AAGLA+G++ +E + R
Sbjct: 402 LRVDGGPTRNRYLMQFQADILNAPVKVSNIEELSALGAAYAAGLALGLYNQEFLEAKEYR 461
Query: 486 TKTSTTFKPVLNEEFRKKKAESWCRAVERT 515
TK ++P ++EE R +K W AV +
Sbjct: 462 TK----YEPCMDEEVRNRKYSGWKEAVRKV 487
|
This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487 |
| >gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 395 bits (1017), Expect = e-133
Identities = 195/509 (38%), Positives = 276/509 (54%), Gaps = 27/509 (5%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
FI AID+GTT+ + ++ D + S YP+ GWVE + I +V+ +A L
Sbjct: 1 FILAIDEGTTNAKAVLVDRDGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQQAIADCL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+ + + AI ++NQRE+ V+W + TG PL + W RT++ C L
Sbjct: 61 A------GVLAAEVAAIAISNQRESVVIWDRQTGAPLGPVLSWQCRRTAAACAALR--AE 112
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + GLPI FSA K+ W+++ VD +G GT+D+WL+WNLTGG
Sbjct: 113 GHEPMVAARTGLPIDPMFSASKMRWLLDRVDDGPARAAQGRLCLGTVDSWLLWNLTGG-- 170
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI-T 246
+ TD SNA+RT L++L WD L+ GIP LP +++++ G +
Sbjct: 171 -AVFATDASNAARTQLLDLHGGQWDPQLLDLFGIPRAALPDVLASAGDFGHTRGLGGLPD 229
Query: 247 GIPISGCLGDQHAAMLGQACKK-GEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
G+PI +GD HAA+ G GE K+TYGTG+ +M + + HGL +T+A+ G
Sbjct: 230 GVPILAMIGDSHAALFGHGAFAPGEVKATYGTGS-SVMTPLRQAIAPSHGLSTTIAWHDG 288
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFA 365
+ YALEG+I + GAAV W+ D LG+ + + ELA + GGVYFVPA GL A
Sbjct: 289 GE--PTYALEGNITVTGAAVAWMADLLGL-PDPAALSELAATASDNGGVYFVPALTGLGA 345
Query: 366 PWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL 425
PWW DARG+ G+T T +AH+ARA LES+ FQ+ DV ++MQ+ A E
Sbjct: 346 PWWDRDARGLISGLTLGTGRAHLARAALESIAFQIADVFEAMQQAA-------GGPLE-R 397
Query: 426 LRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485
L VDGGAT N LMQ+QADLLG PVIR E +ALGAA AG A+G + + +
Sbjct: 398 LSVDGGATRNRFLMQLQADLLGRPVIRSDTPEVSALGAALLAGKALGWWSDLADLTALPD 457
Query: 486 TKTSTTFKPVLNEEFRKKKAESWCRAVER 514
+ T PV++ R W +A+ R
Sbjct: 458 GR--RTIAPVIDAAARAGARNLWKKAIAR 484
|
This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484 |
| >gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 379 bits (975), Expect = e-127
Identities = 191/531 (35%), Positives = 285/531 (53%), Gaps = 50/531 (9%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQF-YPEAGWVEHEPMEILESVRVCMAKA 66
++ A+D GTT+ R IYD QA +GS + + YPE G+VE +P ++ + + +A
Sbjct: 1 YVLALDVGTTTIRCFIYDRQAEVVGS-SYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEA 59
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
+ A + +G++ QR + + W+KSTG P +N I W D R + ++ L
Sbjct: 60 VKDANLTAKQI----AGLGISTQRGSFLTWNKSTGKPYHNFITWKDLRADELVKEWNNSL 115
Query: 127 ------PGGK--------THFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFG 172
K FL A L ++LLW+++N +K+A+K+G+ LFG
Sbjct: 116 LMKAIRVASKVLHLLTRSKRFLAASVLKFMNQHVTLRLLWVLQNNPELKKALKEGNVLFG 175
Query: 173 TIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSN 232
TIDTWL++ LTGG HVTDVSNAS T L + T++W L GIP+ ILPK+V
Sbjct: 176 TIDTWLLYKLTGGK---EHVTDVSNASATGLFDPFTMEWSSWALSLFGIPSSILPKVVDT 232
Query: 233 SEIIGKIGK---GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEE 288
S G G PI PI +GDQ AA+ G C ++G+ K T GTGAF+ +NTG +
Sbjct: 233 SGDFGSTDPELFGVPI---PIRASVGDQQAALFGSCCFERGDVKITMGTGAFVNINTGPK 289
Query: 289 VVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQV 348
S GL + +K+G + Y EG+ G A+ W + S+G+ + +E ++A V
Sbjct: 290 PHASVKGLYPLVGWKIGNE--VVYLAEGASNDTGTAIDWAQ-SIGLFTDPAETSDMANSV 346
Query: 349 NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQ 408
+ GVYF+PAF+GL P A IG+ T+K H+ RA+LES+ F++K + ++++
Sbjct: 347 PDSEGVYFIPAFSGLQPPINDPRACAGFIGLKPSTTKEHLVRALLESIAFRIKQLYETIK 406
Query: 409 KDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAG 468
K+ + IK +RVDGG + N+ + Q+ ADL G PV R E +ALGAA+ AG
Sbjct: 407 KETGQP--IKK------IRVDGGVSNNDFICQLLADLTGLPVERADSTEMSALGAAYLAG 458
Query: 469 LAIGVFKE-EEIFDSGERTKTSTTFKPVLNEEFRKKKAES---WCRAVERT 515
LA+G++K EE+ K F+P RKK W RAV+R
Sbjct: 459 LAVGLWKNKEELKK---LRKVEKIFEP--KPNIRKKYLPIMKKWERAVKRF 504
|
This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504 |
| >gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-113
Identities = 154/468 (32%), Positives = 229/468 (48%), Gaps = 41/468 (8%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I +D GTTS + +++D Q + E+ YP+ GWVE +P EI +++ + +A
Sbjct: 1 YILGLDVGTTSVKAVLFDEQGNILAEASREYEVSYPKPGWVEQDPEEIWQALCEVLREAA 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+A G + AIG+++Q E +L + G PL AI+W D+RT+ C +LE+
Sbjct: 61 AQA--SGGQI----AAIGVSSQGEGVILV-DANGRPLTPAILWQDSRTAEECERLEE--Q 111
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G E GL FS KLLW+ E+ + K T+ +L + LTG
Sbjct: 112 IGADEIYERTGLRPHPMFSGPKLLWLKEHRPEIYSKADK----ILTVADYLAYRLTG--- 164
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI-----GKG 242
V D SNASRTML +++T DWD LE GIP E+LP++V E+ G I
Sbjct: 165 --EFVIDYSNASRTMLFDIQTRDWDPELLEAAGIPRELLPEVVPPGEVAGAISAEAAALL 222
Query: 243 WPITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLA 301
G P+ DQ A LG A +G+A + GT I + E + LL A
Sbjct: 223 GLPPGTPVVAGGHDQQCAALGAGAVDEGDAALSAGTSEVITAVSEPEPATDEG-LLCYPA 281
Query: 302 FKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQV--NSTGGVYFVPA 359
P Y E S GA ++W RD G+ S+ E A + + G+ +P
Sbjct: 282 -----AIPGKYVTEASFFTGGALLRWFRDEFGLREDGSDYEAAAQEAPNSGPNGLLILPH 336
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
F+G P+W ARG G+T T++A I RA+LE + ++++D LD+++ ++ I
Sbjct: 337 FSGSGTPYWDPAARGAIFGLTLGTTRADIYRALLEGIAYELRDNLDALEAAGIKIDRI-- 394
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAA 467
RV GG + ++L +QI AD+ G PV P E ALGAA A
Sbjct: 395 -------RVTGGGSRSDLWLQILADIFGLPVETPEVREAGALGAALLA 435
|
This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435 |
| >gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 325 bits (834), Expect = e-106
Identities = 174/504 (34%), Positives = 253/504 (50%), Gaps = 41/504 (8%)
Query: 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALD 68
I AIDQGTTSTR ++ + + Q YP GWVEH+P+E+L ++R C+ A
Sbjct: 3 IAAIDQGTTSTRVLVAGEDGKAFILLALRHKQHYPNPGWVEHDPLELLANLRACLEAAGV 62
Query: 69 KATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPG 128
+ AIGL NQ E+ + W +G PL IVW D RT SV +L E G
Sbjct: 63 ------------VDAIGLANQGESCLAWDARSGEPLSPVIVWQDNRTESVLERLRAE--G 108
Query: 129 GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNG 188
+ GLP+ YFSA KL W++ N+ AV+ A ++G GT D + + LT
Sbjct: 109 AEAMVRARTGLPLDAYFSASKLGWILRNLPAVRRAHRRGRLRLGTTDAFFLDRLT----- 163
Query: 189 GLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITGI 248
G VTDV+ ASRT LMNL+TL WD G+P E LP+I +G G I
Sbjct: 164 GTFVTDVTTASRTSLMNLETLQWDPELCRLFGVPIECLPEIRPT---VGDFGD---IGCT 217
Query: 249 PISGCLGDQHAAMLGQACKK-GEAKSTYGTGAFILMNTGEEVVKS-KHGLLSTLAFKLGP 306
P++ + DQ A++ G C++ G+AK T+GTGAF L TGE + ++ GLL T+A+++G
Sbjct: 218 PLTASIVDQQASLYGHGCRQPGDAKITFGTGAFALAITGEVIPRAPGSGLLPTVAWQIG- 276
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
P YAL+G + A AAV+W + LG+ S E+ G+ FVPA +GL P
Sbjct: 277 -EPPVYALDGGVYDAAAAVEWAK-RLGLFSDFEELAAFPAPPAIARGLAFVPALSGLACP 334
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
W A G+ +G++ T++ + +A+LE + + +V+ +M +
Sbjct: 335 HWDRSAAGLWLGMSLATTRQDMCQALLEGVAMRSAEVIYAMDGVRPVGDRLS-------- 386
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAA--GLAIGVFKEEEIFDSGE 484
+DGG T N Q AD+L ++ P+ E TALG A A GL + + S +
Sbjct: 387 -IDGGLTRNPYFCQFLADVLQREIVTPSFDELTALGCAALAARGLGNALPSPAPMAVSTQ 445
Query: 485 RTKTSTTFKPVLNEEFRKKKAESW 508
T + L F + W
Sbjct: 446 PVITPGAARAWLRFSFAVARTRGW 469
|
This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470 |
| >gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 6e-84
Identities = 142/471 (30%), Positives = 221/471 (46%), Gaps = 40/471 (8%)
Query: 11 AIDQGTTSTRFIIYD-HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69
ID GTTS + +++D + + + E P+ GW E +P E+ +++ + + L++
Sbjct: 8 GIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE 67
Query: 70 ATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGG 129
+ D + AIG++ Q VL + G PL AI+W D R + +LE+ L G
Sbjct: 68 SKIDPDAI----AAIGISGQGHGLVLLDAN-GEPLRPAILWNDTRAAEEVEELEERLGGE 122
Query: 130 KTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGG 189
GL F+A KLLW+ EN + K I +L + LTG
Sbjct: 123 A--LYARTGLQAMPGFTAPKLLWLKENEPDLFAKAAK----ILLIKDYLRYRLTGEF--- 173
Query: 190 LHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA-EILPKIVSNSEIIGKIGKGWPI--- 245
T++S+AS T L++++T WD L LG+P ++LP +V E++G +
Sbjct: 174 --ATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAAEELG 231
Query: 246 --TGIPISGCLGDQHAAMLG-QACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAF 302
G P+ GD AA LG A G+ S+ GT + T + + + S F
Sbjct: 232 LPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRG---SIYTF 288
Query: 303 KLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN---STGGVYFVPA 359
LG P + + G+ G ++WLR+ G+ S E+ E AL V G+ F+P
Sbjct: 289 CLG--LPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPY 346
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
+G P ARG +G+T ++AH+ARAVLE + F + D L+++++
Sbjct: 347 LSGERGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELG-------- 398
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLA 470
K +RV GG + L +QI AD LG PV+ P E ALG A A A
Sbjct: 399 GKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA 449
|
Length = 502 |
| >gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 3e-83
Identities = 146/487 (29%), Positives = 240/487 (49%), Gaps = 50/487 (10%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+G ID GT+ST+ +++D + E+ P+ GW E +P ++V + + +
Sbjct: 2 LLG-IDIGTSSTKAVLFDLDGEVLAQASREYELSTPQPGWAEQDPEVWWDAVCEIIRELV 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA D + KAIG++ Q T V K G PL AI++MD R +L++ +
Sbjct: 61 AKAGVDPSEI----KAIGVSGQGPTVVPVDKD-GRPLRPAIIYMDRRAKEEVEELKERIG 115
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
+ E G P+ + + A K+LW N V E +K F ++++++ LTG +
Sbjct: 116 EEE--IFERTGNPLDSQYVAPKILWFKRNEPEVWERTRK----FLQSNSYIVYKLTGEL- 168
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241
D S+AS + L +++ +W + L+ LGIP ++LPK+V +I+G + +
Sbjct: 169 ----AVDHSSASGSGLYDIRKGEWSEELLDLLGIPEDLLPKLVRPGDIVGTVTEEAAEET 224
Query: 242 GWPITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTL 300
G P G P+ D AA LG + G+A GT I++ T K L+S+
Sbjct: 225 GLP-AGTPVVAGGADAAAAALGAGVVEPGDAMEMLGTSGVIIVVTDRP--KFDPRLISS- 280
Query: 301 AFKLGPKA-PTNYALEGSIAIAGAAVQWLRDSLGII------SSASEIEELALQVNS-TG 352
P P Y L G ++ GAA++W RD+ G + E+EE A +V
Sbjct: 281 -----PHVVPGTYLLNGGMSTGGAALRWFRDNFGPEETEGGLDAYDELEEEAEKVPPGAD 335
Query: 353 GVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAV 412
G+ F+P G P W DARGV G+T ++AH+ RAVLE + + ++ +L+
Sbjct: 336 GLLFLPYLAGERTPIWDPDARGVFFGLTLGHTRAHLYRAVLEGVAYALRHILEIA----- 390
Query: 413 EKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIG 472
E+ +K ++ + GG + L MQI+AD+LG PV+ P + +LG A A +A+G
Sbjct: 391 EEAGVKVSR----VVAVGGGAKSRLWMQIKADVLGLPVVTPENTVGASLGDALLAAVAVG 446
Query: 473 VFKEEEI 479
V+ + E
Sbjct: 447 VYDDLEE 453
|
This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492 |
| >gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 1e-77
Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 21/261 (8%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ ID GTTST+ I+++ Q + + S + P+ GW E +P EI +++ + K L
Sbjct: 1 YVLGIDCGTTSTKAIVFNKQGKVVASASAPYALISPKPGWAEQDPEEIWQALAQAIRKIL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
++ + K IG++ Q VL K+ PLY AI+W D RT+ + L++E
Sbjct: 61 QQSGISPKQI----KGIGISGQGHGLVLLDKNDK-PLYPAILWNDTRTAEIVENLKEE-- 113
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
GG E G I F+ KL W+ E+ + E +K F I +L W LT
Sbjct: 114 GGADKLYEITGNTIWPGFTLSKLRWLKEHEPEIFERARK----FLLIHDYLRWRLT---- 165
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI----GKGW 243
G TD S+AS TM+ N+KTL+WD+ L LGIP ++LP +V +SEI G + +
Sbjct: 166 -GQFTTDYSDASGTMMFNIKTLEWDEELLAILGIPPDLLPPLVESSEIYGTLNPEHAALF 224
Query: 244 PI-TGIPISGCLGDQHAAMLG 263
+ GIP+ G GD AA LG
Sbjct: 225 GLDEGIPVVGGGGDNQAAALG 245
|
This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245 |
| >gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 7e-69
Identities = 144/485 (29%), Positives = 224/485 (46%), Gaps = 49/485 (10%)
Query: 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKA 66
++G ID GT+ + ++ D + S E+ P+ GW E +P + E+ + + +
Sbjct: 1 YYLG-IDLGTSGVKALLVDEDGEVVASASAEYPLSQPKPGWSEQDPEDWWEATKAAIREL 59
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
L K+ G V + IGL+ Q VL K G L AI+W D RT++ C ++ + +
Sbjct: 60 LAKSGIAGGEV----RGIGLSGQMHGLVLLDK-DGKVLRPAILWNDQRTTAECEEITERV 114
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKK----GDALFGTIDTWLIWNL 182
G +E G P F+A KLLW+ E+ I K D +L + L
Sbjct: 115 GG---ELIEITGNPALPGFTAPKLLWLREHEPENFAKIAKVLLPKD--------YLRYRL 163
Query: 183 TGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK- 241
TG TDVS+AS T+L+++ DW L+ LGI ILP++ +SE+ G +
Sbjct: 164 TGE-----IATDVSDASGTLLLDVAKRDWSDELLDALGIDRAILPELYESSEVTGTLTAE 218
Query: 242 -----GWPITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKHG 295
G P G P+ GD A +G + G+A + GT + + + G
Sbjct: 219 AAAELGLP-AGTPVVAGGGDNAAGAVGNGVVRPGDAFVSLGTSGVVFAVS-DSPAPDPEG 276
Query: 296 LLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNS-TGGV 354
+ T + P + L G AG +++W RD+ G S E+ A QV + G+
Sbjct: 277 RVHTFCHAV----PGRWYLMGVTLSAGGSLKWFRDTFGPDDSYEELLAEAEQVPPGSEGL 332
Query: 355 YFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEK 414
F+P +G P +ARG IG+T ++AH+ RAVLE + F ++D L+ +++ V
Sbjct: 333 LFLPYLSGERTPHNDPNARGAFIGLTLSHTRAHLTRAVLEGVAFSLRDSLEILRELGVP- 391
Query: 415 GVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVF 474
I + GG + L +QIQAD+LG PV E ALGAA A + G +
Sbjct: 392 --IDR------IIAIGGGARSPLWLQIQADVLGLPVDTLKGEEGPALGAAILAAVGAGWY 443
Query: 475 KEEEI 479
E
Sbjct: 444 PSVEE 448
|
This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482 |
| >gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 1e-61
Identities = 133/489 (27%), Positives = 208/489 (42%), Gaps = 45/489 (9%)
Query: 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKA 70
ID GT+S + + + + E+T P GW E +P + ++V+ + LD
Sbjct: 4 GIDIGTSSVKASLVNLDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEALLD-- 61
Query: 71 TADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGK 130
+ + AIG+T Q VL + G L AI+W D R++ +L+ L
Sbjct: 62 --QAGDSAEDIAAIGVTGQMHGAVLLDQQ-GRVLRPAILWNDTRSAPEVTELKARLGAE- 117
Query: 131 THFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGL 190
G + ++ KLLW+ EN E ++ + D ++ LTG
Sbjct: 118 --IFSITGNIPTPGWTLPKLLWLKENE---PEVFRRIARVLLPKD-YIRLRLTG-----E 166
Query: 191 HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWP-----I 245
TD S+AS T+L + + +W GIP ++LP + SEI G +
Sbjct: 167 LATDRSDASGTLLFDAASREWSDDLCALYGIPEDLLPPLHEPSEIAGAVTPEAARKTGLK 226
Query: 246 TGIPISGCLGDQHAAMLG-QACKKGEAKSTYGTGAFILMNTGEEVVKSK---HGLLSTLA 301
G P+ GD AA LG G+A + GT + + + V K +
Sbjct: 227 AGTPVVAGAGDNAAAALGAGVVDPGQASLSLGTSGVVAVVSEGPVPDPKGAVITFAHAVP 286
Query: 302 FKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSAS-EIEELALQVN-STGGVYFVPA 359
+ TN A G+A++W RD LG + E+ ELA QV G+ F+P
Sbjct: 287 GRWYQVTCTNSA--------GSALRWARDLLGPADVSYAEMAELAAQVPVGANGLLFLPY 338
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
NG P+ +ARG G+T ++ H+ARAVLE + F ++D L+ +
Sbjct: 339 LNGERTPYNDPNARGAFFGLTLSHTRGHLARAVLEGVAFSLRDCLEVLH--------GMG 390
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEI 479
+ + + GGA + L QI AD+LG PV PA+ E ++GAA A + G F +
Sbjct: 391 TAPQRIKLIGGGAK-SELWRQILADVLGVPVELPANAEGASVGAALLAAVGAGDFADLNE 449
Query: 480 FDSGERTKT 488
R
Sbjct: 450 AARTVRQLP 458
|
This subfamily is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. XKs do not have any known allosteric regulators, and they may have weak but significant activity in the absence of substrate. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 482 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 6e-58
Identities = 139/474 (29%), Positives = 211/474 (44%), Gaps = 43/474 (9%)
Query: 12 IDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKAT 71
ID GT+ + ++ D Q I S T P GW E +P + ++ + + L++A+
Sbjct: 3 IDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQAS 62
Query: 72 ADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKT 131
G ++ K IG++ Q VL + G L AI+W D RT+ C +LE EL G
Sbjct: 63 EMGQDI----KGIGISGQMHGLVLLDAN-GEVLRPAILWNDTRTAQECEELEAEL--GDE 115
Query: 132 HFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLH 191
LE G F+A KLLW+ ++ V I K +L + LTG +
Sbjct: 116 RVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAK----VMLPKDYLRYRLTGE-----Y 166
Query: 192 VTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGK----IGKGWPI-T 246
VT+ S+AS T ++ W K L+ L +P LP+++ +SE G + +
Sbjct: 167 VTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSA 226
Query: 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSK---HGLLSTLAF 302
G+P++ GD A +G G+A + GT + T + + HG L
Sbjct: 227 GVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHAL-- 284
Query: 303 KLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFN 361
P + G A ++++W R+ G + ELA Q GV F+P N
Sbjct: 285 ------PGGWLPMGVTLSATSSLEWFRELFGKEDVE-ALNELAEQSPPGAEGVTFLPYLN 337
Query: 362 GLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAK 421
G P ARG IG+T T++A + RAVLE + F ++D LD + E G I
Sbjct: 338 GERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDIL----REAGGIPIQS 393
Query: 422 SEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFK 475
+R+ GG + Q+ AD+ G+PV P E ALGAA A A+G
Sbjct: 394 ----IRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGEKD 443
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 9e-54
Identities = 123/484 (25%), Positives = 210/484 (43%), Gaps = 57/484 (11%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+G ID GTT T+ +++D R I P+ G+VE + E+ E+V + + L
Sbjct: 2 LLG-IDAGTTVTKAVLFDLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIRELL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+KA D ++ IG+T Q + L K G P+ I+ +D+R + + + +++
Sbjct: 61 EKAGVDAEDI----AGIGVTGQGDGLWLVDKE-GKPVGPGILSLDSRAAELVERWQED-G 114
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
F E G + + L W+ E+ E + + + D W+ + LTG
Sbjct: 115 TEDAIF-ELTGQGLWAGQPSSLLAWLKEHE---PERLARAGTVLFCKD-WIRFRLTGEA- 168
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP--AEILPKIVSNSEIIGKIGK---- 241
TD ++AS + L++L+T +D L+ LG+ ++LP IV +++I+G +
Sbjct: 169 ----ATDPTDASGSSLLDLRTGQYDDELLDLLGLEEIRDLLPPIVDSADIVGTLTAEAAA 224
Query: 242 --GWPITGIPISGCLGDQHAAMLG-QACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLS 298
G P G P+ G L D A LG +G+ S GT + +N EV+ S +
Sbjct: 225 LTGLPA-GTPVVGGLFDVVACALGSGLVDEGDLCSIAGTWS---IN---EVL-SDDPVPE 276
Query: 299 TLAFKLGPKAPTNYALEGSIAIAGAA-VQWLRDSLGIISSAS--------EIEELALQVN 349
F P Y L + A+ + W +L +A + L
Sbjct: 277 AEPFGYSLYLPPGYYLVEESSPTSASNLDWFLRTLLEDEAAKASGGSLYALLNRLVAAAP 336
Query: 350 ST-GGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQ 408
F P L +AR G++ + ++A + RAV E + F +D L++++
Sbjct: 337 PEYHPYLFEP---FLRGSNVDPNARAGFFGLSAWHTRADLVRAVYEGVAFAHRDHLEALR 393
Query: 409 KDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAG 468
+ +R+ GGA + + Q+ AD+LG PV E ALGAA AA
Sbjct: 394 ATGLPG----------EIRLTGGAARSPVWAQMFADVLGLPVEVVEGEELGALGAAIAAA 443
Query: 469 LAIG 472
+A+G
Sbjct: 444 VALG 447
|
This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 447 |
| >gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-53
Identities = 125/484 (25%), Positives = 200/484 (41%), Gaps = 63/484 (13%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I +D GTTST+ +++D R + + P G E +P EI ++V + + +
Sbjct: 1 YILGVDIGTTSTKAVLFDEDGRIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEVV 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
KA + A+ ++ + + + G PL I W D R + +L++ L
Sbjct: 61 AKALGG--RIA----AVSFSSAMHSLIALDED-GEPLTPVITWADTRAAEYAEELKERLD 113
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMEN-VDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
G + G P+ + KLLW+ E + +A K F +I ++++ L G
Sbjct: 114 GR--ELYQRTGCPLHPMYPLAKLLWLKEERPELFAKAAK-----FVSIKEYVLYRLFG-- 164
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKG-WPI 245
V D S AS T L+N+ TLDWD+ LE GI E LP++V +E + + P
Sbjct: 165 ---ELVVDYSIASGTGLLNIHTLDWDEEALEIAGISEEQLPELVPTTEQLRGLKAERAPK 221
Query: 246 TGIP-----ISGCLGDQHAAMLG-QACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLST 299
G+P + G D + LG A G A T GT I + + V L
Sbjct: 222 LGLPEDTPFVLG-ASDGALSNLGVGAVDPGVAAITIGTSGAIRVVLDQPVTDPPGRL--- 277
Query: 300 LAFKLGPKAPTNYALEGSIAIAGAAV-------QWLRDSLGIISSASEIEELALQVNS-- 350
Y L+ + G AV +WLRD+L + E E L ++
Sbjct: 278 ----------FCYRLDKGRWVLGGAVNNGGIVLRWLRDTLAL---PEEEEAEELGIDPYD 324
Query: 351 --TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQ 408
T G+ F+PA G P W R G+TR + I A +E + +++ +L+ +
Sbjct: 325 GLTRGLEFLPAGAGERFPPWLSGERAPLWGLTRAARGSFIGLAAMEGVAHRLRAILEGI- 383
Query: 409 KDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAG 468
+ + A L+ GGAT + AD L ++ E GAA A
Sbjct: 384 ---IFNLSVGLA----LVEASGGATESRAWGGFLADALWRQILADIFEEAPLRGAALLAL 436
Query: 469 LAIG 472
A+G
Sbjct: 437 SALG 440
|
This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440 |
| >gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 3e-53
Identities = 130/515 (25%), Positives = 210/515 (40%), Gaps = 58/515 (11%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ AID GT+ + + R + S + Y G E +P + ++V + L
Sbjct: 1 YVLAIDLGTSGVKAALVSPDGRLVASATEAYETHYLPGGGAEQDPEDWWDAVVRATRRLL 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+ + + V I + Q + V + G PL AI+WMD R + +L + L
Sbjct: 61 EDSGVNPRRVA----GISFSGQMQGVVPVDED-GRPLRPAIIWMDQRAAPEAERLMEGLG 115
Query: 128 G-------GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
G P S K+LW+ +N V K F +L
Sbjct: 116 KVAGYGLKLLKWLRLTGGAPKSGKDPLAKILWLRDNEPDVYAKTYK----FLDAKDYLNL 171
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLD--WDKPTLETLGIPAEILPKIVSNSEIIGK 238
LTG TD +AS T L + + W + L GI E LP++V +++++G
Sbjct: 172 RLTGR-----FATDPDDASLTWLTDNRDGRIRWSEELLAAAGIDREKLPELVPSTDVVGT 226
Query: 239 IGK------GWPITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVK 291
+ G P G P+ GD AA +G A G+A GT ++I +
Sbjct: 227 VLPEAARELGLP-EGTPVVAGGGDASAAAVGAGAVADGDAHLYLGTSSWIATHVPFPKTD 285
Query: 292 SKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI----------ISSASEI 341
+H + S L P Y + AG A++WL+D L S +
Sbjct: 286 VRHRIFS-----LPHAIPGKYLVVAEQETAGGALEWLKDLLLQDEDGLADEEGRSVYERL 340
Query: 342 EELALQVNS-TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQV 400
+ELA + G+ F+P +G +P +ARG ++ T++A + RAVLE + +
Sbjct: 341 DELAASAPPGSNGLIFLPWLHGERSPVEDPNARGGFFNLSLETTRADLLRAVLEGVALNL 400
Query: 401 KDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD-IETT 459
+ +AVE+ + + LR GG ++L QI AD+LG P+ R D E
Sbjct: 401 R-----WLLEAVERFLGRRLG---ELRFVGGGARSDLWCQIIADVLGRPIRRVEDPEEAG 452
Query: 460 ALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKP 494
A GAA A + +G+ + + TF+P
Sbjct: 453 ARGAAAIAAVGLGLLSFFDAAGQ--LVRVDRTFEP 485
|
This subgroup is composed of uncharacterized proteins with similarity to bacterial D-Xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 514 |
| >gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 6e-51
Identities = 135/512 (26%), Positives = 209/512 (40%), Gaps = 67/512 (13%)
Query: 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFY-PEAGWVEHEPMEILESVRVCMAKALDK 69
AID GT S R +++D Q + QV +Y P+ GW E +P +++ + ++
Sbjct: 4 AIDCGTQSVRALLFDRQGNLVAKGQVPIEPYYSPKPGWAEQDPDYYWQALCEACRELWEQ 63
Query: 70 ATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGG 129
D + + LT QRET VL K G PL AI+W+D R + L
Sbjct: 64 IPVDPGRI----AGVALTTQRETFVLLDKD-GKPLRPAILWLDQRAAEQLPPL----AWW 114
Query: 130 KTHFLEAVGLPIS--TYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
+ +G P + + K W+ EN + I A F + +L + LTG
Sbjct: 115 IRLLFKLIGKPETIDVIPAEAKANWIREN----EPEIWAKTAKFLLLSGYLTYKLTG--- 167
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTL---ETLGIPAEILPKIVSNSEIIGKIGK--- 241
V V++ + + K W K + I E LP++V ++IG I
Sbjct: 168 --RFVDSVASQVGYIPFDYKKRRWAKKEDLKWQGFPIEPEQLPELVPPGKLIGTITAEAA 225
Query: 242 ---GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLL 297
G P G P+ D+ LG + G A + GT A +N S
Sbjct: 226 EATGLP-EGTPVIAGGSDKACETLGAGALEPGIACLSLGTTA--TVNGT-----SSRYFE 277
Query: 298 STLAFKLGPKA-PTNYALEGSIAIAGA-AVQWLRDSLGII---------SSASEIEELAL 346
F P P Y E I G V W ++ G + + + AL
Sbjct: 278 PDRFFPAYPAVIPGGYNPEIEI-FRGYWLVSWFKEEFGQKEVQEAEELGIAPEALLDEAL 336
Query: 347 QVNSTG--GVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVL 404
+ G G+ P + P W +ARG IG ++AH+ RA++E + + +++ L
Sbjct: 337 KEIPPGSDGLMLQPYWGPG-MPHWDPEARGAIIGFGDVHTRAHLYRAIIEGIAYALREGL 395
Query: 405 DSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAA 464
+ ++K K IK LRV GG + ++L+ QI AD+ G PV RP E + LGAA
Sbjct: 396 ERIEKRTGVK--IK------KLRVSGGGSQSDLICQITADIFGLPVERPHTYEASGLGAA 447
Query: 465 FAAGLAIGVFKEEEIFDS--GERTKTSTTFKP 494
AA + G + + F + TF+P
Sbjct: 448 IAAAVGAGWYPD---FAEAVAAMVRVGKTFEP 476
|
This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488 |
| >gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 7e-51
Identities = 131/470 (27%), Positives = 203/470 (43%), Gaps = 56/470 (11%)
Query: 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKA 70
ID GTT+T+ +++D I + + T G +P E+ ++ + +AL A
Sbjct: 4 GIDVGTTNTKVVVFDDDGTIIAIRKFK-TPKNVSDGGPYFDPDELWRAIEKVICQALAAA 62
Query: 71 TADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGK 130
+ AI +T+ E+ VL G PLY AI W D RT +L K+ PG
Sbjct: 63 PDP-------IAAISITSVGESGVLVDAD-GEPLYPAIAWYDRRTEEEAEELRKQDPGLA 114
Query: 131 THFLEAVGLPISTYFSAVKLLWMME-NVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGG 189
E GLP +S K+LW+ E + K A K I ++++ LTG
Sbjct: 115 --IYEITGLPPDPIYSLFKILWLREHRPEVWKRAYKWLH-----IPDYILFRLTGRP--- 164
Query: 190 LHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKG-WPITGI 248
VTD + ASRT+L +++ +W + LE GIP + LP++V + IIG++ K G+
Sbjct: 165 --VTDFTLASRTLLFDIRAREWSEELLEMFGIPPDALPELVPSGTIIGEVSKDAAESLGL 222
Query: 249 P------ISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAF 302
+ G H +G A M T E ++ L
Sbjct: 223 STGTPVVLGG-----HDHPVGSYA----AGVIDPGDILDSMGTAEALLAIASAKLKETLT 273
Query: 303 KLG-----PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFV 357
+ G P Y L + G A++WLR+ LG +S+ +E L F
Sbjct: 274 REGVAFGVYAEPDRYYLIAGLPSGGFAIEWLRNILGGEASSKRAQEKLL----DSAALFY 329
Query: 358 PAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVI 417
P G +P + A G G+T TS+ I R+VLE + F+ + L+ ++K E
Sbjct: 330 PYSRGSGSPIRSEIAGGAFYGLTDTTSQEDITRSVLEGLTFEARSTLECLEKLGFEGS-- 387
Query: 418 KDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAA 467
+ V GG + N L +Q++A +LG P+ + E ALGAA A
Sbjct: 388 -------RIVVIGGGSRNKLWLQLKASVLGKPIEVLDEAELVALGAALLA 430
|
This subfamily is composed of uncharacterized carbohydrate kinases. They are sequence homologous to bacterial glycerol kinase and have been classified as members of the FGGY family of carbohydrate kinases. The monomers of FGGY proteins contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 430 |
| >gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal domain | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-40
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 24/208 (11%)
Query: 271 AKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRD 330
A + GT +F+L+ T E V+ S HG+ + + LEG + AG+ + WL
Sbjct: 1 AAVSLGTSSFVLVETSEPVL-SVHGVWGPYTNE------GGWGLEGGQSAAGSLLGWLLQ 53
Query: 331 SLGI---ISSASEIEELAL-----QVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRF 382
+L + A +E LAL GG+ F+P F+G AP ARG G++
Sbjct: 54 TLRAREELRDAGLVESLALLLALAADAPAGGLLFLPDFSGERAPGADPHARGAITGLSSP 113
Query: 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQ 442
T+ A++ RA+LE + ++ +L+++ + I GG + N LL+Q+
Sbjct: 114 TTLANLYRALLEGLALALRQILEALAELGAPIDRI---------IASGGGSRNPLLLQLL 164
Query: 443 ADLLGSPVIRPADIETTALGAAFAAGLA 470
AD LG PV P E TALGAA A +A
Sbjct: 165 ADALGRPVEVPETAEATALGAALLAAVA 192
|
This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. Length = 193 |
| >gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-37
Identities = 116/479 (24%), Positives = 201/479 (41%), Gaps = 50/479 (10%)
Query: 12 IDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKAT 71
+D GTTST+ ++++ + + + + + P +G E P EI E+V V + +
Sbjct: 5 VDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSIN-- 62
Query: 72 ADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKT 131
+ + + + Q + + + ++ PL I W D R ++++ G
Sbjct: 63 ---LEDEDEILFVSFSTQMHSLIAFDENWQ-PLTRLITWADNRAVKYAEQIKESKNGFDI 118
Query: 132 HFLEAVGLPISTYFSAVKLLWMM-ENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGL 190
+ G PI K++W+ E+ D ++A K + I ++ L G
Sbjct: 119 Y--RRTGTPIHPMAPLSKIIWLEAEHPDIYQKAAK-----YLEIKGYIFQRLFG-----T 166
Query: 191 HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI-TGI- 248
+ D S AS T + NL LDWDK LE GI LPK+V +EI + + GI
Sbjct: 167 YKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMGIQ 226
Query: 249 ---PISGCLGDQHAAMLG-QACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKL 304
P D + LG A KKGEA T GT I + K + L
Sbjct: 227 SSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKG---RIFCYAL 283
Query: 305 GPKAPTNYALEGSIAIAGAAVQWLRDSL--GIISSAS--------EIEELALQVN-STGG 353
+ ++ + G + G ++W RD + I +A+ + E+A +V+ G
Sbjct: 284 TKE---HWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADG 340
Query: 354 VYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVE 413
+ F P G AP W +ARG G+T K H+ RA LE + + + V ++ + V
Sbjct: 341 LLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTVALALVE--VM 398
Query: 414 KGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIG 472
+ +++ GG + + Q+ +D+ ++ P E++ LGA A+G
Sbjct: 399 GDPLN------MIQATGGFASSEVWRQMMSDIFEQEIVVPESYESSCLGACILGLKALG 451
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway [Energy metabolism, Sugars]. Length = 505 |
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-35
Identities = 120/472 (25%), Positives = 205/472 (43%), Gaps = 46/472 (9%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPI-GSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKA 66
++G +D GT ST+ I+ D + + G E +P ++++ +A
Sbjct: 2 YLG-VDCGTQSTKVIVLDAETGEVLAEGSAPHELISGSNGRREQQPQWWIDALVEAFRQA 60
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
L A D V +AIG++ Q+ V G L A +W D T+ +L ++L
Sbjct: 61 LADAGIDPKEV----RAIGVSGQQHGLVPLDAQ-GEVLRPAKLWCDTETAPENAELIEKL 115
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
GG ++E +G T ++A KLLW+ E+ E K + D +L + LTG
Sbjct: 116 -GGAKAWIERLGNAPLTGYTASKLLWLKEH---EPENFAKIATILLPHD-YLNFWLTGR- 169
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLG---IPAEILPKIVSNSEIIGK----I 239
+VT+ +AS T +++T +W + L+ + A+ LP ++S E G
Sbjct: 170 ----YVTEYGDASGTGYFDVRTREWSEEVLDAIDPALDLADALPTLLSPDEPAGTVRPEA 225
Query: 240 GKGWPI-TGIPISGCLGDQHAAMLGQA-CKKGEAKSTYGTGAFILMNTGEEVVKSKHGLL 297
+ + + ++ GD +G K G + GT + + + VV G +
Sbjct: 226 AEALGLSGDVLVASGGGDNMMGAIGTGNVKPGVVTMSLGTSGTLYAYSDKPVV-DPQGEV 284
Query: 298 STLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN-STGGVYF 356
+ G P L ++ + A Q +R+ LG+ E+ LA Q G+
Sbjct: 285 AGFCSSTGGWLP----LICTMNVTVATEQ-VRNLLGL--DIEELNALAAQAPPGAEGLTL 337
Query: 357 VPAFNGLFAPWWRDDARGVCIGIT-RFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKG 415
+P FNG P +ARG G+T T++A++ARA +E F ++ LD ++ ++
Sbjct: 338 LPFFNGERTP-NLPNARGSLHGLTSANTTRANLARAAVEGATFGLRYGLDLLRALGLKST 396
Query: 416 VIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAA 467
I R+ GG + QI AD++ + V+ P E ALGAA A
Sbjct: 397 EI---------RLIGGGAKSPAWRQIIADIMNAEVVVPDTEEAAALGAAIQA 439
|
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487 |
| >gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 1e-34
Identities = 123/473 (26%), Positives = 193/473 (40%), Gaps = 43/473 (9%)
Query: 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKA 70
AID GT STR + + E Q P+ GW E P++ + C+ + L +
Sbjct: 4 AIDVGTGSTRAALVRIDGAIVAFAAREHEQTVPQFGWSEQRPLDWWQGACDCIREVLARV 63
Query: 71 TADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGK 130
+ IG Q TVL + A +W D RT E G
Sbjct: 64 PGAAERI----AVIGACGQMHGTVLLDDAGELTRDTAPLWNDKRTQPQVDAFEAR--NGW 117
Query: 131 THFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGL 190
+L + P + + A KL W EN D +A + + D ++ + LTG +
Sbjct: 118 EKYLAHLANPPAPAWPAFKLAWWREN-DP--QAYSRLAKVLMPKD-YINFMLTGAM---- 169
Query: 191 HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------GWP 244
TD + AS + LM+ T W ET+G+ ++LP + +IIG++ + G P
Sbjct: 170 -ATDRTEASCSFLMDPATRSWSSQACETMGLDVDLLPPLRLPLDIIGQVTQPAADLTGLP 228
Query: 245 ITGIPISGCLGDQHAAMLGQA-CKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
GIP+ D A+LG C+ G + GT + + ++ H +S L
Sbjct: 229 -AGIPVLVGASDYAMALLGSGVCEPGMGSDSTGTSTIVTLVADRPLL---HPEVSNLHTA 284
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSL--GIISSASEIEELALQVNSTGGVYFVPAFN 361
G G G AV+W R +L +S A + E A + G+ F+P
Sbjct: 285 EGAWGAFTLLDAG-----GDAVRWARRALHDNQLSYAQLVAEAAAAPAGSEGLLFLPYLT 339
Query: 362 GLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAK 421
G R ++R G+ + H+ RAVLE + F V L +QK +
Sbjct: 340 GERLGEHR-NSRAQFFGLGAKHGRGHLHRAVLEGVAFAVWRHLRQLQKCQ--------GR 390
Query: 422 SEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVF 474
E ++ GGA L ++I+A + G P++ P + E +G A A +A G F
Sbjct: 391 PERMIASGGGAR-TALWLKIKASVYGLPILVPREQECGVVGCAAMAAVATGRF 442
|
This subgroup is composed of proteobacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 493 |
| >gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-29
Identities = 119/477 (24%), Positives = 191/477 (40%), Gaps = 50/477 (10%)
Query: 12 IDQGTTSTRFIIYDHQARPIGSHQV--EFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69
+D G T+ R I + Q + + S + Q + + EI + + C + L +
Sbjct: 5 LDCGATNVRAIAVNEQGQIVASASLPNATKQGIENNDYHIWDFDEIWQKLVECATQVLSQ 64
Query: 70 ATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGG 129
A + AI +T K G LY I W RT+ V + +E E+
Sbjct: 65 LNAKQ------IVAITVTTFGVDGAPVDKQ-GNQLYPIISWKCPRTAPVMKNIENEIDRL 117
Query: 130 KTHFLEAVG-LPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNG 188
+ + VG +T + KL+W+ EN + E + K F I + L LTG
Sbjct: 118 SLYQINGVGAYSFNTLY---KLVWLKENHPQLLEKMHK----FVFISSMLTHRLTG---- 166
Query: 189 GLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGK----IGKGWP 244
TD + A +M+ +L + +W L LG+ E+ P +V E IG +
Sbjct: 167 -EFTTDRTMAGTSMMTDLTSGNWSPSILAYLGLSRELFPPLVDAGEKIGLLTTEAAQLLG 225
Query: 245 I-TGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
+ GIP+ D A+ G ++ + + GT ILM + + L L +
Sbjct: 226 LPAGIPVISAGHDTQFALFGSGAEQNQPVLSSGTWE-ILMARSAQAELDRESLEQGLTVE 284
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASE------IEELALQVNSTGGVYFV 357
L A + + ++W+ S IEE GV F
Sbjct: 285 L--DAQSGLYNPAIQWLGSGVIEWVGKLFFSAEYGSGELYQTMIEEAEKAGPGADGVNFE 342
Query: 358 PAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVI 417
P F L D G G++ T++ HI RA LE + Q+K LD +++ +
Sbjct: 343 PDFLQL------GDGNGSIEGLSLHTTRGHIYRAALEGLTNQLKRNLDYLEQ-------V 389
Query: 418 KDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVF 474
K++ L+ V GG + N L QI+AD L P+ E+T LGAA A +G++
Sbjct: 390 GQFKAKPLILV-GGGSKNTLWNQIRADALQIPLKVVDQAESTVLGAAMFAFAGVGIY 445
|
This subfamily is composed of bacterial L-fuculose kinases (FK, also known as fuculokinase, EC 2.7.1.51), which catalyze the ATP-dependent phosphorylation of L-fuculose to produce L-fuculose-1-phosphate and ADP. The presence of Mg2+ or Mn2+ is required for enzymatic activity. FKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448 |
| >gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 6e-29
Identities = 120/502 (23%), Positives = 199/502 (39%), Gaps = 83/502 (16%)
Query: 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65
+G ID GT S R ++D RP+GS + +P GW E P + E++ + +
Sbjct: 1 PYVLG-IDGGTESVRAGLFDTTGRPLGSAAAPYGTTHPRPGWAEQNPEDWWEALGAAVRE 59
Query: 66 ALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKE 125
AL +A +V A+ T V + G PL AI+WMD R +
Sbjct: 60 ALAEAGIAAPDV----AALCCDTTCCTVVALDAA-GTPLRPAILWMDVRAA--------- 105
Query: 126 LPGGKTHFLEAVGLPISTYFSAV----------KLLWMMEN-VDAVKEAIKKGDALFGTI 174
+ + A G + K +W+ +N D A +A
Sbjct: 106 ---EEAARVLATGDDALRLNGSGGGVSAEWMVPKAMWLKKNEPDVYARAATICEAQ---- 158
Query: 175 DTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPT--LETLGIP--AEILPK-I 229
+L + LTG G L +NA + N TL+ P LG+P + LP+ +
Sbjct: 159 -DYLNFRLTGRWCGSL-----NNA--AVRWNYDTLNGGPPEDLYAALGMPDLLDKLPQRV 210
Query: 230 VSNSEIIGKIGK------GWPITGIPISGCLGDQHAAMLG-QACKKGEAKSTYGTGAFIL 282
++ E++G + G P G P++ D M+G + G+ G+ L
Sbjct: 211 LAVGEVVGSLTDEAAAHLGLP-GGTPVAQGGADAFVGMIGLGVIEPGQMALITGSSHLHL 269
Query: 283 MNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLG--------- 333
T E G+ T + P + +EG G+ ++W +D +G
Sbjct: 270 GVTDREF--HAPGVWGTYPDAV---YPGTWLVEGGQTSTGSVLKWFKDLIGGGDDNGYDE 324
Query: 334 IISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVL 393
+ A+ + + G+ + F G P+ ARG G+T ++AH+ RA+L
Sbjct: 325 LNEEAAAVPP------GSEGLVVLDYFQGNRTPYTDPLARGAIWGLTLGHTRAHVYRAIL 378
Query: 394 ESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRP 453
E + + + + D+M+ E I A GGAT + L +QI AD++G P
Sbjct: 379 EGVAYGTRHIFDAMEAAGYEVSEIVAA---------GGATRSRLWLQIHADVIGVPFELT 429
Query: 454 ADIETTALGAAFAAGLAIGVFK 475
+ + LG A A + G+F
Sbjct: 430 EETDAPLLGCAILAAVGAGIFA 451
|
This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484 |
| >gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 117/488 (23%), Positives = 189/488 (38%), Gaps = 72/488 (14%)
Query: 13 DQGTTSTRFIIYDHQARPIGS-HQVEFTQFYPE-AGWVEHEPMEILESVRVCMAKALDKA 70
D G T+ R I D Q + + + E + W + IL+ C + +
Sbjct: 8 DCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67
Query: 71 TADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGK 130
T ++ I +T L K G LY I W RT++V +E+ + +
Sbjct: 68 TECH------IRGITVTTFGVDGALVDKQ-GNLLYPIISWKCPRTAAVMENIERYISAQQ 120
Query: 131 THFLEAVG-LPISTYFSAVKLLWMMENVDAVKEAIKKGDA-LFGTIDTWLIWNLTGGVNG 188
+ VG +T + KL+W+ EN + +++ A LF I + + LTG
Sbjct: 121 LQQISGVGAFSFNTLY---KLVWLKENH---PQLLEQAHAWLF--ISSLINHRLTG---- 168
Query: 189 GLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------G 242
TD++ A + +++++ D+ L+ G+ + P++V E IG + G
Sbjct: 169 -EFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAAALLG 227
Query: 243 WPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAF 302
P GIP+ D A+ G + + + GT ILM V+S S L+
Sbjct: 228 LP-VGIPVISAGHDTQFALFGSGAGQNQPVLSSGTWE-ILM------VRSAQVDTSLLSQ 279
Query: 303 KLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIIS-------SASE-----IEELALQVNS 350
G L+ + +QWL + G++ +A IEE
Sbjct: 280 YAGSTC----ELDSQSGLYNPGMQWL--ASGVLEWVRKLFWTAETPYQTMIEEARAIPPG 333
Query: 351 TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKD 410
GV G+T T++ H RA LE + Q+K L ++K
Sbjct: 334 ADGVKMQCDLLAC--------QNAGWQGVTLNTTRGHFYRAALEGLTAQLKRNLQVLEK- 384
Query: 411 AVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLA 470
I K+ LL V GG + N L QI+A++L P+ D ETT GAA
Sbjct: 385 ------IGHFKASELLLV-GGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYG 437
Query: 471 IGVFKEEE 478
+G F E
Sbjct: 438 VGEFSSPE 445
|
Length = 470 |
| >gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-27
Identities = 115/489 (23%), Positives = 181/489 (37%), Gaps = 54/489 (11%)
Query: 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPE-AGWVEHEPMEILESVRVCMA 64
+ IG +D GT S R ++D R + S + P AGW E +P + +VR +
Sbjct: 1 KYVIG-VDVGTESVRAGVFDLNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVR 59
Query: 65 KALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEK 124
A+ A D + A+G+ T V G PL A++W D R +
Sbjct: 60 AAVAAAGVDP----DQVAALGVDATSCTVVPLDAE-GQPLTPALLWDDHRAADQAN---- 110
Query: 125 ELPGGKTHFLE-AVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLT 183
+ L G +S + K+LW+++ + D D WL W LT
Sbjct: 111 AINEVGGPALWDYGGKIVSPEWMLPKVLWLLQEAPDTW---NRADHFLEAPD-WLGWRLT 166
Query: 184 GGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP---AEILPKIVSNSEIIGKIG 240
G T + A + +W + LG P A LP +V+ G +
Sbjct: 167 GKR---PVATCSAVAKWGYDA--REGEWANSVFDKLGDPRLTAAKLPAVVAPLTRAGGLL 221
Query: 241 K------GWPITGIPISGCLGDQHAAMLG-QACKKGEAKSTYGTGAFILMNTGEEVVKSK 293
G P G ++ + D HA + G GT + E
Sbjct: 222 PEAAEKTGLP-PGTAVAVGMTDAHAGQIAVGVVTPGRFVLVLGTSIVHKGVSEELHEDEM 280
Query: 294 HGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDS-------LGIISSASEIEELAL 346
G + + P + LEG + G W D ++ A
Sbjct: 281 CGAVYSAIL------PGYWWLEGGQSATGGIFLWFVDVGRLAATFDEAQEKGVALDAAAA 334
Query: 347 QVNSTG-GVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLD 405
+ G+ + FNG +P+ + RG +G+T T +A I RA+LE++ F + +++
Sbjct: 335 ERGPQLRGLLALDRFNGNRSPFVDPELRGFLLGLTLPTDRADIYRALLEAVAFGTRLIVE 394
Query: 406 SMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAF 465
+ L GG ++L MQI AD+ G PV A+ E ALGAA
Sbjct: 395 AFHGLGYP--------EVGPLYAAGGGARSHLWMQIHADVTGRPVRLAAEKEAPALGAAL 446
Query: 466 AAGLAIGVF 474
A +A G +
Sbjct: 447 LAAVAAGHY 455
|
This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465 |
| >gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 109/491 (22%), Positives = 178/491 (36%), Gaps = 83/491 (16%)
Query: 12 IDQGTTSTRFIIYDHQARPI-----GSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKA 66
ID GTTS + + D + + + P E + +IL ++ C+ +
Sbjct: 6 IDIGTTSVKACLLDSETKEVLASQSKPTSANVPSDGPLGS--EQDVDKILSTLDSCLKRL 63
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGC--------------PLYNAIVWMD 112
+ +KAIG+T Q VLW + C LY W D
Sbjct: 64 -------PKELLKKVKAIGVTGQMHGIVLWKQDQSCEDGDLISITNTPVSNLYT---WQD 113
Query: 113 ARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFG 172
R S K LP ++H LPI T F L W+ +N E ++ D G
Sbjct: 114 GRCS---EDFLKSLPKPQSH------LPIHTGFGCATLFWLQKNGP---EFLESFDHC-G 160
Query: 173 TIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSN 232
TI +++ L G V NA+ +L+T W+ L+ G P +LP++V
Sbjct: 161 TIQDFVVAMLCGLSRP---VMSPHNAASWGYFDLETNAWNSEILQAAGFPVHLLPEVVPP 217
Query: 233 SEIIGKIGKGWP--ITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVV 290
I G +G W G P+ LGD ++L ++ +A GT A + +
Sbjct: 218 GTIAGTLGGDWYGIPKGTPVGVALGDLQCSVLACLQEETDAVLNIGTSAQLSFLPVFKPE 277
Query: 291 KSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAV---------QWLRDSLGIISSASE- 340
+ N+ L + ++ G V W+ + LG E
Sbjct: 278 TVPPASPEYRPY------FKNHYLAVAASLNGGNVLAAFVKMLQSWVEE-LGFSVPQDEV 330
Query: 341 ---IEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFT-SKAHIARAVLESM 396
+ LAL + + P G D R IT + HI RA+ + +
Sbjct: 331 YDRLIALALAESDP-PLKIDPTLFG---ERHDPDLRASVSNITLSNLTLGHITRALCQGI 386
Query: 397 CFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADI 456
V+++ + ++ ++K A E ++ N +L + G P+ +
Sbjct: 387 ---VENLHEMFPRE-----LLKSAGIERIVGSGSALRRNPVLRDEVEKVFGLPL-VLSKG 437
Query: 457 ETTALGAAFAA 467
E ALGAA A
Sbjct: 438 EDAALGAALAM 448
|
This subfamily is predominantly composed of uncharacterized bacterial and eukaryotic proteins with similarity to human sedoheptulokinase (SHK, also known as D-altro-heptulose or heptulokinase, EC 2.7.1.14) encoded by the carbohydrate kinase-like (CARKL/SHPK) gene. SHK catalyzes the ATP-dependent phosphorylation of sedoheptulose to produce sedoheptulose 7-phosphate and ADP. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448 |
| >gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-24
Identities = 116/479 (24%), Positives = 194/479 (40%), Gaps = 55/479 (11%)
Query: 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKA 66
++IG ID GT+ + I+ + Q + S + T P W E +P + ++ M
Sbjct: 1 MYIG-IDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAM--- 56
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
KA D H++ +KA+G+ Q L L AI+W D R + C LE +
Sbjct: 57 --KALGDQHSL-QDVKALGIAGQMHGATLLDAQQRV-LRPAILWNDGRCAQECALLEARV 112
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
P + G + F+A KLLW+ + + I K L +L +TG
Sbjct: 113 PQSR----VITGNLMMPGFTAPKLLWVQRHEPEIFRQIDK--VLLPK--DYLRLRMTGEF 164
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG----KIGKG 242
+D+S+A+ TM +++ DW L+ + + +P + SEI G ++ K
Sbjct: 165 -----ASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKA 219
Query: 243 WPITGIPISGCLGDQHAAMLGQA-CKKGEAKSTYGT-GAFILMNTG-----EEVVKS-KH 294
W + +P+ GD A +G +A + GT G + ++ G E V S H
Sbjct: 220 WGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCH 279
Query: 295 GLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGV 354
L P + L + A + + W G+ + + I S V
Sbjct: 280 AL------------PQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPV 327
Query: 355 YFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEK 414
+F+P +G P A+GV G+T +ARAVLE + + + D +D + ++
Sbjct: 328 WFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKP 387
Query: 415 GVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPV-IRPADIETTALGAAFAAGLAIG 472
+ + GG + Q+ AD+ G + R ALGAA A +A
Sbjct: 388 QSVT---------LIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAAN 437
|
Length = 484 |
| >gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 113/489 (23%), Positives = 188/489 (38%), Gaps = 67/489 (13%)
Query: 12 IDQGTTSTRFIIYDHQARPIGSHQV--EFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69
+D G T+ R I + Q + + S Q + + I + + C
Sbjct: 6 LDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADC------- 58
Query: 70 ATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCP-------LYNAIVWMDARTSSVCRKL 122
++S + + R V G P LY I W RT+ V +
Sbjct: 59 ----CQQINSE---LTEKHIRGIAVTTFGVDGAPFDKQGNQLYPIISWKCPRTAPVMDNI 111
Query: 123 EKELPGGKTHFLEAVG-LPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWN 181
E+ L + + + +G +T + KL+W+ E+ + E + K F I + +
Sbjct: 112 ERLLDAQRLYAINGIGAYSFNTLY---KLVWLKEHHPQLFERMHK----FVFISSMITHR 164
Query: 182 LTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGK--- 238
LTG TD++ A +M+ +L +W L+ LG+ + P +V E IG
Sbjct: 165 LTG-----EFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQN 219
Query: 239 -IGKGWPI-TGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGL 296
+ G+P+ D A+ G ++ + + GT ILM ++V S
Sbjct: 220 SAAAMLGLPVGVPVISAGHDTQFALFGSGAEQNQPVLSSGTWE-ILMARSQQVDTSLLSQ 278
Query: 297 LSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASE------IEELALQVN- 349
+ +L +A +A ++W+R + S+ IEE L N
Sbjct: 279 YAGSTCELDSQA--GLYNPAMQWLASGVLEWVRKLFFTAETPSDHYYQMMIEEARLIANG 336
Query: 350 STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQK 409
+ G V F + G+T T++ HI RA LE + Q+K L +++
Sbjct: 337 ADGVVNFQCDLLSCGQGGIQ--------GLTLNTTRGHIYRAALEGLTAQLKRNLQMLEQ 388
Query: 410 DAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGL 469
I K+ LL V GG + N L QI+A++L PV D ETT GAA
Sbjct: 389 -------IGQFKASELLLV-GGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFY 440
Query: 470 AIGVFKEEE 478
+G + E
Sbjct: 441 GVGEYNSPE 449
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon [Energy metabolism, Sugars]. Length = 465 |
| >gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 116/489 (23%), Positives = 191/489 (39%), Gaps = 71/489 (14%)
Query: 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQF----YPEAGWVEHEPMEILESVRVCMAKA 66
A D GT S R +I+D I Q E+ YP G ++ +P + V C+ +A
Sbjct: 4 AFDAGTGSVRAVIFDLTGNQIAVSQEEWEHLAEPRYP--GSMDFDPQVNWKLVCRCIRQA 61
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
L ++ + A+ T+ RE VL+ + G ++ A +DAR + R+L++
Sbjct: 62 LARSGIA----PIDIAAVSATSMREGIVLYDQ-NGNEIW-ACANVDARAAEEVRELKEWE 115
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
P + + G + +LLW+ ++ + E I W+++ L+G +
Sbjct: 116 PDLEKEIYRSSG-QTFALGALPRLLWLKQHRPDIYEKTAS----VTMISDWILYKLSGVL 170
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK----- 241
+ SNA T L +LKT DW L+ +G+ +I P +V +IG +
Sbjct: 171 -----AVEPSNAGTTGLFDLKTRDWSPEMLDIVGLRDDIFPPVVETGTVIGTVTNEAASE 225
Query: 242 -GWPITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLST 299
G G P+ GD LG + G+ GT ++N E V K +
Sbjct: 226 TGLAA-GTPVVAGGGDVQLGALGLGVVRPGDTAVLGGTFWQQVVNITEPVTDPKMNI--- 281
Query: 300 LAFKLGPKAPTNYALEGSIA-IAGAAVQWLRDSLGIISS---------ASEIEELALQVN 349
++ P +I+ G ++W RD+ E+ E
Sbjct: 282 ---RVNPHVVPGLWQAETISFFTGLVMRWFRDAFCAEEKLEAERLGIDTYELLEEMASRV 338
Query: 350 STGGVYFVPAFN--------GLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401
G +P F+ AP + + + + + +A + RA+ E+
Sbjct: 339 PVGSYGIIPIFSDVMNYGTWYHAAPSFLNLS----LDPEKC-GRATLFRALEENAAIVSA 393
Query: 402 DVLDSMQKDAVEKGVIKDAKSEFLLRV--DGGATVNNLLMQIQADLLGSPVIRPADIETT 459
LD I D + GGA+ + L QI AD+ G PV+ P E T
Sbjct: 394 WNLDI----------ITDFTGFEPDYLVFAGGASKSKLWSQILADVTGKPVVVPVVKEAT 443
Query: 460 ALGAAFAAG 468
ALGAA AAG
Sbjct: 444 ALGAAIAAG 452
|
This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452 |
| >gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 5e-22
Identities = 112/512 (21%), Positives = 180/512 (35%), Gaps = 76/512 (14%)
Query: 7 VFIGAIDQGTTSTRFIIYDHQA-RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65
IG +D GT S R ++D Q + + + P + E + E+V +
Sbjct: 4 YVIG-VDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRD 62
Query: 66 ALDKATADGHNVDSGLKAIG-------LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSV 118
+ KA D +V IG + R+ L N I+WMD R
Sbjct: 63 VVAKAGVDPADV----VGIGVDATCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEE 118
Query: 119 CRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWL 178
++ L+ G IS KL+W+ AV E + +F D WL
Sbjct: 119 AEEINA----TCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWE---RAAHIFDLAD-WL 170
Query: 179 IWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEI-----LPK-IVSN 232
W LTG + + + + + W + +G+ LP+ IV
Sbjct: 171 TWKLTGSIARSR----CTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPA 226
Query: 233 SEIIGKIGKGWP-----ITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGA-FILMNT 285
E +G + G +S + D HA +G + G GT +L++
Sbjct: 227 GEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSE 286
Query: 286 GEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLG------------ 333
V G P + EG + G + L +
Sbjct: 287 KPRFVPGVWGPYDGAV------LPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKD 340
Query: 334 -------IISSASEIEELALQVNS-TGGVYFVPAFNGLFAPWWRDDARGVCIGI---TRF 382
+ + E A + G++ + FNG +P +GV G+ T
Sbjct: 341 GEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSP 400
Query: 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQ 442
S A + RA+LE+ F + ++++ + + I L GG N LLMQ+
Sbjct: 401 ESLALLYRALLEATAFGTRAIIETFEDQGIA---IDT------LFASGGIRKNPLLMQLY 451
Query: 443 ADLLGSPVIRPADIETTALGAAFAAGLAIGVF 474
AD+ G PV+ PA + LGAA A +A GV
Sbjct: 452 ADVTGRPVVIPASDQAVLLGAAMFAAVAAGVH 483
|
Length = 544 |
| >gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 5e-20
Identities = 140/510 (27%), Positives = 205/510 (40%), Gaps = 73/510 (14%)
Query: 8 FIGAIDQGTTSTRFIIYDHQA-RPIGSHQV---EFTQFYPEAGWVEHEPMEILESVRVCM 63
F+G D G++S + + D + + + S E P+ GW E +P +
Sbjct: 2 FLG-YDIGSSSIKAALVDAETGKSLASVSYPEQEMEILSPQPGWAEQDPEIWWDYTCAAT 60
Query: 64 AKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLE 123
+ +++ D N+ +AIG++ Q VL K G L AI+W D+R S+ K
Sbjct: 61 KQLINQGKEDLSNI----QAIGISYQMHGLVLVDKQ-GNVLRPAIIWCDSRAVSIGEKAF 115
Query: 124 KELPGGKT--HFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKK----GDALFGTIDTW 177
+EL H L + G F+A KL W+ EN V + I K GD +
Sbjct: 116 QELGEDFCLSHLLNSPG-----NFTASKLAWVKENEPEVFDRIAKIMLPGD--------Y 162
Query: 178 LIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG 237
+ LTG V T S S ML + K + LE LG+ ++P IV N G
Sbjct: 163 IAMKLTGEVT-----TTKSGLSEGMLWDFKKNEVAVELLEYLGLDRSLIPDIVPNFSEQG 217
Query: 238 KIGK------GWPITGIPISGCLGDQ--HAAMLGQACKKGEAKSTYGTGAFILMNTGEEV 289
+ G GIPI+ GDQ +A L GE +T GT I T +
Sbjct: 218 TVTSEIAAELGLS-EGIPITYRAGDQPNNALSLN-VLNPGEVAATAGTSGVIYGVTDQPA 275
Query: 290 VKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQ--WLRDSLG-IISSASEIEELAL 346
+ + + L P P N L + I G + WLR +LG S +E+ LA
Sbjct: 276 YDPQSRVNTFLHVNNTPAQPRNGVL---LCINGTGILYSWLRKTLGTADLSYAEMNALAA 332
Query: 347 QVN-STGGVYFVPAFNG---LFAPWWRDDARGVCIGITRFT--SKAHIARAVLESMCFQV 400
QV + G+ +P NG +F + G I F KAH+ RA E + F
Sbjct: 333 QVPIGSEGLVVLPFGNGAERMF----NNKLIGASIQNLNFNRHGKAHLVRAAQEGIVFAF 388
Query: 401 KDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETT- 459
L+ M+ VI+ K+ L + L A++ G+ V T
Sbjct: 389 AYGLEIMRNMGASITVIRAGKANLFL--------SPLFSDTFANVTGTTV---ELYNTDG 437
Query: 460 ALGAAFAAGLAIGVFKE-EEIFDSGERTKT 488
A GAA AG+ G +K E F E+ T
Sbjct: 438 AEGAARGAGVGSGYYKSLNEAFQGLEKLST 467
|
This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 490 |
| >gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 4e-18
Identities = 117/549 (21%), Positives = 197/549 (35%), Gaps = 98/549 (17%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFY-PEAGWVEHEPMEILESVRVCMAKA 66
+IG +D GT S R I D I + + + + P +G + I +++ C+ +
Sbjct: 2 YIG-VDVGTGSARACIIDSTGD-ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQV 59
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPL-------YNAIVWMDARTSSVC 119
L ++ D ++V K IG VL P+ N I+WMD R +
Sbjct: 60 LAESKVDPNSV----KGIGFDATCSLVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEA 115
Query: 120 RKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLI 179
K+ + L VG +S K+LW+ N+ A K F + +L
Sbjct: 116 EKINAT----NHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCK----FFDLTDFLT 167
Query: 180 WNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI 239
W TG V + ++ W + ET+G L ++V+++ I ++
Sbjct: 168 WRATG--KEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIG-----LGELVTDNFI--RM 218
Query: 240 GKGWPITGIPISGCLGDQHAAMLGQACKKGEAKST---------YGT-GAFILMNTGEEV 289
G W G + G L + A LG G A + GT GA + N
Sbjct: 219 GGSWMSPGELVGGGLTAEAAQELGLP--AGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQ 276
Query: 290 VKSKHGLLS-----TLAFKLGPK-------------APTNYALEGSIAIAGAAVQWLRDS 331
++ ++ +A GP P + EG + AG + + ++
Sbjct: 277 AFTRLAAVAGTSTCHMAMTKGPVFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLET 336
Query: 332 LGIISSASE----------------IEELALQVNS------TGGVYFVPAFNGLFAPWWR 369
+ ++E+A + N+ + P G +P
Sbjct: 337 HVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIAD 396
Query: 370 DDARGVCIGITRFTSKAHIARAVLESMCF---QVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
+ RGV IG++ SK +A +M F + ++++M IK +
Sbjct: 397 PNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKS------I 447
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKE-EEIFDSGER 485
+ GG N LLMQ+ AD PV+ P E GAA A G + + D
Sbjct: 448 FMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDR--M 505
Query: 486 TKTSTTFKP 494
+K T P
Sbjct: 506 SKPGKTVWP 514
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PMID:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. Length = 541 |
| >gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 54/251 (21%)
Query: 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFT-----------QFYPEAGWVEHEPMEILESV 59
A+D GT S R +I+D I Q E+ +F E W +
Sbjct: 7 ALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNW---------QLA 57
Query: 60 RVCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVC 119
C+ +AL KA S + A+ T+ RE VL+ ++ G ++ A +DAR S
Sbjct: 58 CQCIRQALQKAGIPA----SDIAAVSATSMREGIVLYDRN-GTEIW-ACANVDARASREV 111
Query: 120 RKLEKELPG---------GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDAL 170
+L++ G+T L A LP +LLW+ + +
Sbjct: 112 SELKELHNNFEEEVYRCSGQTLALGA--LP--------RLLWLAHHRPDIYRQAHT---- 157
Query: 171 FGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIV 230
I W+ + L+G + D SNA T L++L T DWD LE G+ A+ILP +
Sbjct: 158 ITMISDWIAYMLSGEL-----AVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVK 212
Query: 231 SNSEIIGKIGK 241
++G +
Sbjct: 213 ETGTVLGHVTA 223
|
Length = 520 |
| >gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 4e-12
Identities = 114/530 (21%), Positives = 182/530 (34%), Gaps = 107/530 (20%)
Query: 9 IGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQ-------FYPEAGWVEHEPMEILESVR 60
IG +D GT S R ++ D + + S VE+ P + +E +
Sbjct: 4 IG-LDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLE 62
Query: 61 VCMAKALDKATADGHNVDSGLKAIGL-TNQRETTVLWSKSTGCPLY---------NAIV- 109
+ + L +A D +V IG+ T +T + G PL +A V
Sbjct: 63 TAIPEVLKEAGVDPDDV----VGIGVDTTG--STPIPVDEDGTPLCLLPEFKNNPHAYVK 116
Query: 110 -WMDARTSSVCRKLEKELPGGKTHFLEAVGLPIST--YFSAVKLLWMMENVDAVKEAIKK 166
W D ++ +L G S+ ++ K+L ++ V EA
Sbjct: 117 LWKDHTAQKEADRITALAHERGEDYLRYYGGVYSSEWFWP--KILHVLREAPEVYEAA-- 172
Query: 167 GDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMN-----------LKTLDWDKPT 215
D+ D W+ LTG + A + + L LD P
Sbjct: 173 -DSWVEACD-WIPAQLTGTTDPKKLKRSRCAAGHKAMWHEEWGGLPSDEFLSALD---PK 227
Query: 216 LETLGIPAEILPKIVSNSEIIGKIGKGWPI-----TGIPISGCLGDQHAAMLGQACKKGE 270
L G+ ++ I ++ E G + W GI ++ D H +G + G
Sbjct: 228 LA--GVRDKLSGPIYTSGEKAGGLSPEWAARLGLPEGIAVAVGAFDAHMGAVGAGAEPGT 285
Query: 271 AKSTYGTGAFILMNTGEE--------VVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAG 322
GT +M + VV G P E + G
Sbjct: 286 LVKVIGTSTCDIMLAEKVGDVPGICGVVD-------------GSIIPGYIGYEAGQSAVG 332
Query: 323 AAVQWLRDSLGIISSASEIEELALQVNSTGGVYFV-------PAFNGLFA-PWW------ 368
W ++L S EE A + P +GL A WW
Sbjct: 333 DIFAWFVENLV----PSLYEEEAKRRGDEVLPLLSEKAAKLPPGESGLLALDWWNGNRTV 388
Query: 369 --RDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
G+ +G+T T I RA++E+ F + +++ ++ V ++ +
Sbjct: 389 LVDQRLTGLILGLTLQTKAEEIYRALIEATAFGARAIIERFEEQGVP---VER------V 439
Query: 427 RVDGG-ATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFK 475
GG A N LLMQI AD+L P+ A +T ALGAA A +A GV+
Sbjct: 440 IAAGGIAQKNPLLMQIYADVLNRPIKVVASEQTCALGAAIFAAVAAGVYP 489
|
This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498 |
| >gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 6e-10
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 341 IEELALQVNS----TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIAR---AVL 393
+EELA + S T ++ +P F+G +P + RGV G+T TS +AR A L
Sbjct: 360 LEELAAEKGSVAYLTRDLHVLPDFHGNRSPLADPNLRGVISGLTLDTSLDDLARLYLATL 419
Query: 394 ESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRP 453
+++ + + ++++M + I L GG + N L +Q+ AD G PV+ P
Sbjct: 420 QAIAYGTRHIIEAMNAAGHK---IDT------LFACGGLSKNPLFVQLHADATGLPVVLP 470
Query: 454 ADIETTALGAAFAAGLAIGVFK 475
+ E LGAA +A G F
Sbjct: 471 KEEEAVLLGAAMLGAVAAGDFP 492
|
This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536 |
| >gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 112 DARTSSVCRKLEKELPGGKTHFLEAVG---LPISTYFSAVKLLWMMENVDAVKEAIKKGD 168
D RT V ++ + +P K E G +P +T + +L + + + E K
Sbjct: 98 DPRTDGVMEEVFERIP--KEELYERTGIQFMPFNTLY---QLYALKKEGPELLEKADK-- 150
Query: 169 ALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPK 228
L I L + LTG V + +NAS T L++ +T DWD LE LGIP E+ P
Sbjct: 151 LLM--IPDLLNYLLTGVK-----VNEYTNASTTQLLDPRTRDWDTELLEKLGIPEELFPP 203
Query: 229 IVSNSEIIGKI 239
+V ++G +
Sbjct: 204 LVEPGTVLGPL 214
|
This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 440 |
| >gnl|CDD|198369 cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 86/396 (21%), Positives = 145/396 (36%), Gaps = 45/396 (11%)
Query: 81 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLP 140
+ I T+QR+ VL +K G + + +D R R+ E + + E G
Sbjct: 70 VIGITSTSQRQGIVLINK-VGKA-FLGLPNIDNRG----REWEAGIED-REEIYEKTGRL 122
Query: 141 ISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASR 200
+ FSA KL+ + + ++ I K +I W+ L+G + V + S A
Sbjct: 123 PTALFSAAKLMGLKKRQPSLWAGIAK----ITSISDWVTEMLSGIL-----VYEPSQACE 173
Query: 201 TMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------GWPITGIPISGCL 254
T+L ++++ +W + GI +ILP++V +GKI K G I+G
Sbjct: 174 TLLFDVESKEWSERLCGIFGISMDILPELVRAGTSLGKIKKEMADELGLSEDAEVIAGG- 232
Query: 255 GDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYAL 314
GD A+ G+ GT I T + + G + +
Sbjct: 233 GDTQLALKSVGAGVGDIVIVSGTTTPITKITDYKYYDKQERAWLNCHTGGG-----TWLV 287
Query: 315 EGSIAIAGAAVQWLRDSLGIISSASEIE-ELALQVNSTGGVYFVPAFNGLFAPWWRDDAR 373
E + + G Q L+ S +E E+A + A + +
Sbjct: 288 ETNPGVTGLNYQKLKAIFYPNESYEVMEEEIAKLQKTDHAC--TAALGSYLSSEKNALKK 345
Query: 374 GVCIGITRFT---SKAHIARAVLESMCFQVKDVLDSM-QKDAVEKGVIKDAKSEFLLRVD 429
G + + +AH A L + F +K S+ + EK + V
Sbjct: 346 GGFVFDAPLSTTLKRAHFVWAALAEIAFSIKWNYRSLTEVTGFEKDYVL---------VC 396
Query: 430 GGATVNNLLMQIQADLLGSPV-IRPADIETTALGAA 464
GG + L Q ADLL + IR + + GAA
Sbjct: 397 GGGFQSKALTQHLADLLQKKLYIREGFSQASINGAA 432
|
This subgroup consists of uncharacterized hypothetical bacterial proteins with similarity to bacterial autoinducer-2 (AI-2) kinases, which catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, leading to the inactivation of lsrR, the repressor of the lsr operon. Members of this subgroup belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 437 |
| >gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 430 GGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER-TKT 488
GG + L QI AD+ G PV P E TALG A AAG+ G++ + ++GER +
Sbjct: 417 GGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIY--SSLAETGERLVRW 474
Query: 489 STTFKPVL-NEEFRKKKAESWCRAVERTFNLADLSL 523
TF+P N E ++ E W L D L
Sbjct: 475 ERTFEPNPENHELYQEAKEKWQAVYADQLGLVDHGL 510
|
Length = 520 |
| >gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 373 RGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVE-KGVIKDAKSEFLLRVDGG 431
+GV G+T T I RA++E+ F + +++ + V + VI GG
Sbjct: 398 KGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFEDQGVPVEEVI----------AAGG 447
Query: 432 -ATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVF 474
A N +LMQI AD+L P+ A + ALGAA A +A G +
Sbjct: 448 IARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAY 491
|
Length = 548 |
| >gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
FNG +P +GV G+T T + RA++E+ F + ++++ V
Sbjct: 382 FNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTDSGV------- 434
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEI 479
E L+ G A N ++MQI AD+ P+ A + ALGAA A +A GV+ +
Sbjct: 435 -PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPS 493
Query: 480 FDSGERTKTSTTFKP 494
+ + T P
Sbjct: 494 AQAKMGSAVEKTLTP 508
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli [Energy metabolism, Sugars]. Length = 536 |
| >gnl|CDD|233955 TIGR02627, rhamnulo_kin, rhamnulokinase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 94/419 (22%), Positives = 165/419 (39%), Gaps = 73/419 (17%)
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
L+K A+G DS IG+ VL ++ G + + + + D+RT V +++ EL
Sbjct: 58 LNKVDAEGIAPDS----IGIDTWGVDFVLLDQN-GQRVGDPVSYRDSRTDGVMAQVQSEL 112
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
GK + G+ + + +L + E + E + F I +L + LTG
Sbjct: 113 --GKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVAH----FLLIPDYLNYRLTGKK 166
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPIT 246
+ +NA+ T L+N+ T DWD+ L LG+PA + +IG W
Sbjct: 167 V-----WEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGL----WECP 217
Query: 247 GIP----ISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAF 302
++ D +A++ A +GE + +G + LM +S+ + + A
Sbjct: 218 QGNQIPVVAVATHDTASAVVA-APLQGENAAYLSSGTWSLMG-----FESQTPITNEQAL 271
Query: 303 KLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI-----ISSASEIEELALQVNSTGGVYFV 357
N EG A + L++ +G+ + +I +L + +
Sbjct: 272 A------ANITNEGG---ADGRYRVLKNIMGLWLLQRVCRERDINDLPALIEQAQA---L 319
Query: 358 PAFNGLFAPWWRDDAR-----GVCIGITRF---------TSKAHIARAVLESMCFQVKDV 403
PAF + P +D R +C I + S A +AR + +S+ + V
Sbjct: 320 PAFKSIINP---NDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIFDSLALLYRQV 376
Query: 404 LDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALG 462
L + ++ L V GG+ N L Q+ AD G VI +E + LG
Sbjct: 377 LLEL-------AELRGKPISQLHIVGGGSQ-NAFLNQLCADACGIRVI-AGPVEASTLG 426
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. Length = 454 |
| >gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 26/187 (13%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+IG +D GT S R ++D + R + ++P+ +VE +I ++V + A+
Sbjct: 3 YIG-VDVGTGSARAGLFDAKGRLLARAVRPIQIWHPQPDFVEQSSDDIWQAVCQAVKAAI 61
Query: 68 DKATADGHNVDSGLKAIG---------LTNQ-RETTVLWSKSTGCPLYNAIVWMDARTSS 117
A D V K IG L + + +V +G N IVWMD R S
Sbjct: 62 AGAGVDPEQV----KGIGFDATCSLVVLDKEGQPLSVSP---SGDNEQNIIVWMDHRAIS 114
Query: 118 VCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTW 177
++ L+ VG IS KLLW+ EN + E + F D +
Sbjct: 115 EAERINA----TGHPVLKYVGGVISPEMETPKLLWLKEN---LPETWSRAGKFFDLPD-F 166
Query: 178 LIWNLTG 184
L W TG
Sbjct: 167 LTWRATG 173
|
This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536 |
| >gnl|CDD|182609 PRK10640, rhaB, rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 31/167 (18%)
Query: 112 DARTSSVCRKLEKELPGGKTHFLEAVG---LPISTYFSAVKLLWMMENVDAVKEAIKK-G 167
D+RT V + +++L GK G LP +T + L + E I +
Sbjct: 86 DSRTDGVMAQAQQQL--GKRDIYRRSGIQFLPFNTLYQLRAL------TEQQPELIAQVA 137
Query: 168 DALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILP 227
AL I + + LTG +N + +NA+ T L+N+ + DWD+ L G P
Sbjct: 138 HALL--IPDYFSYRLTGKMN-----WEYTNATTTQLVNINSDDWDESLLAWSGAPKAWFG 190
Query: 228 KIVSNSEIIGK----IGKGWPITGIP--------ISGCLGDQHAAML 262
+ +IG G P+ + I+ L D AA L
Sbjct: 191 RPTHPGNVIGHWICPQGNEIPVVAVASHDTASAVIASPLNDSDAAYL 237
|
Length = 471 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 100.0 | |
| PLN02295 | 512 | glycerol kinase | 100.0 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 100.0 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 100.0 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 100.0 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 100.0 | |
| PRK15027 | 484 | xylulokinase; Provisional | 100.0 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 100.0 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 100.0 | |
| PRK04123 | 548 | ribulokinase; Provisional | 100.0 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 100.0 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 100.0 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 100.0 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 100.0 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 100.0 | |
| PLN02669 | 556 | xylulokinase | 100.0 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 100.0 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 100.0 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 100.0 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 100.0 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 100.0 | |
| KOG2531 | 545 | consensus Sugar (pentulose and hexulose) kinases [ | 100.0 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 100.0 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 99.45 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 98.75 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 98.25 | |
| COG1940 | 314 | NagC Transcriptional regulator/sugar kinase [Trans | 97.95 | |
| PRK13311 | 256 | N-acetyl-D-glucosamine kinase; Provisional | 97.92 | |
| PRK09698 | 302 | D-allose kinase; Provisional | 97.89 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 97.86 | |
| PRK09557 | 301 | fructokinase; Reviewed | 97.84 | |
| PRK13310 | 303 | N-acetyl-D-glucosamine kinase; Provisional | 97.81 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 97.74 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.73 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 97.7 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.65 | |
| PF00480 | 179 | ROK: ROK family; InterPro: IPR000600 A family of b | 97.62 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 97.54 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 97.5 | |
| PRK05082 | 291 | N-acetylmannosamine kinase; Provisional | 97.29 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.15 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 97.14 | |
| smart00732 | 99 | YqgFc Likely ribonuclease with RNase H fold. YqgF | 97.14 | |
| PF05378 | 176 | Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r | 97.06 | |
| COG2971 | 301 | Predicted N-acetylglucosamine kinase [Carbohydrate | 97.06 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 97.04 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 96.98 | |
| PRK00292 | 316 | glk glucokinase; Provisional | 96.8 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 96.8 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 96.75 | |
| PLN02920 | 398 | pantothenate kinase 1 | 96.74 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 96.74 | |
| PRK12408 | 336 | glucokinase; Provisional | 96.73 | |
| PRK13318 | 258 | pantothenate kinase; Reviewed | 96.7 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 96.68 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 96.56 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 96.51 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 96.49 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 96.41 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 96.37 | |
| PRK14101 | 638 | bifunctional glucokinase/RpiR family transcription | 96.34 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 96.21 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 96.12 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 96.08 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 96.08 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 95.97 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 95.94 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 95.91 | |
| COG0533 | 342 | QRI7 Metal-dependent proteases with possible chape | 95.88 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 95.79 | |
| PRK11678 | 450 | putative chaperone; Provisional | 95.67 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 95.66 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 95.52 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 95.26 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 95.22 | |
| PF03630 | 341 | Fumble: Fumble ; InterPro: IPR004567 Pantothenate | 95.21 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 95.1 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 95.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 94.93 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 94.89 | |
| PF00349 | 206 | Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo | 94.69 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 94.69 | |
| PLN02902 | 876 | pantothenate kinase | 94.62 | |
| TIGR02707 | 351 | butyr_kinase butyrate kinase. This model represent | 94.56 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 94.46 | |
| KOG0103 | 727 | consensus Molecular chaperones HSP105/HSP110/SSE1, | 94.22 | |
| TIGR00143 | 711 | hypF [NiFe] hydrogenase maturation protein HypF. A | 94.2 | |
| PRK09604 | 332 | UGMP family protein; Validated | 93.83 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 93.77 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 93.72 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 93.44 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 93.17 | |
| TIGR00749 | 316 | glk glucokinase, proteobacterial type. This model | 93.06 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 92.99 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 92.77 | |
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 92.63 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 92.57 | |
| KOG1794 | 336 | consensus N-Acetylglucosamine kinase [Carbohydrate | 92.42 | |
| PTZ00288 | 405 | glucokinase 1; Provisional | 91.93 | |
| PF13941 | 457 | MutL: MutL protein | 91.73 | |
| PRK13331 | 251 | pantothenate kinase; Reviewed | 91.27 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 91.14 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 91.07 | |
| PLN02914 | 490 | hexokinase | 91.0 | |
| TIGR03723 | 314 | bact_gcp putative glycoprotease GCP. This model re | 90.96 | |
| PRK13324 | 258 | pantothenate kinase; Reviewed | 90.71 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 90.66 | |
| PTZ00340 | 345 | O-sialoglycoprotein endopeptidase-like protein; Pr | 90.6 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 90.58 | |
| TIGR03722 | 322 | arch_KAE1 universal archaeal protein Kae1. This fa | 90.35 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 89.95 | |
| COG2377 | 371 | Predicted molecular chaperone distantly related to | 89.57 | |
| COG2192 | 555 | Predicted carbamoyl transferase, NodU family [Post | 89.45 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 89.19 | |
| PLN02405 | 497 | hexokinase | 89.09 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 88.83 | |
| PLN02666 | 1275 | 5-oxoprolinase | 88.71 | |
| PLN02362 | 509 | hexokinase | 88.13 | |
| TIGR00329 | 305 | gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami | 87.97 | |
| PLN02596 | 490 | hexokinase-like | 87.82 | |
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 87.67 | |
| KOG0101 | 620 | consensus Molecular chaperones HSP70/HSC70, HSP70 | 87.59 | |
| PRK13326 | 262 | pantothenate kinase; Reviewed | 87.39 | |
| PTZ00107 | 464 | hexokinase; Provisional | 87.29 | |
| TIGR03123 | 318 | one_C_unchar_1 probable H4MPT-linked C1 transfer p | 87.18 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 86.08 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 85.79 | |
| PRK13320 | 244 | pantothenate kinase; Reviewed | 85.62 | |
| PTZ00340 | 345 | O-sialoglycoprotein endopeptidase-like protein; Pr | 85.13 | |
| COG0145 | 674 | HyuA N-methylhydantoinase A/acetone carboxylase, b | 84.74 | |
| TIGR00671 | 243 | baf pantothenate kinase, type III. This model desc | 84.41 | |
| KOG1794 | 336 | consensus N-Acetylglucosamine kinase [Carbohydrate | 84.28 | |
| KOG2201 | 371 | consensus Pantothenate kinase PanK and related pro | 83.96 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 83.77 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 83.62 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 83.56 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 83.53 | |
| COG0068 | 750 | HypF Hydrogenase maturation factor [Posttranslatio | 83.3 | |
| KOG0102 | 640 | consensus Molecular chaperones mortalin/PBP74/GRP7 | 83.23 | |
| PRK09604 | 332 | UGMP family protein; Validated | 83.18 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 83.09 | |
| COG3734 | 306 | DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate | 82.74 | |
| COG5026 | 466 | Hexokinase [Carbohydrate transport and metabolism] | 82.52 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 82.01 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 81.58 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 81.52 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 80.39 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 80.26 |
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-105 Score=797.57 Aligned_cols=493 Identities=54% Similarity=0.900 Sum_probs=468.1
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++|+++||.||||+|+++||.+|++++.++.+++.++|+|||+||||.++|.++..++++++.+ .++.+.+ |.+||
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~-iaaIG 79 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGE-IAAIG 79 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccc-eEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999988 6888999 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
|+.|++|.++||+++|+|++|+|.|+|.|+.+.++++++. +..+.+.++||.+++|+|+..|+.|+.+|.|...+|+.
T Consensus 80 ITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~--g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae 157 (499)
T COG0554 80 ITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD--GYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAE 157 (499)
T ss_pred eeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc--chhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhh
Confidence 9999999999999999999999999999999999999987 45678899999999999999999999999999999999
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCC
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~ 245 (523)
++.++|++++.||.|+|||+. .++||+||||+|+|||+++.+||+++|+.||||.+.||+++++.++.|.+..+++.
T Consensus 158 ~Gel~fGTiDtWLiw~LTgg~---~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t~~~~~g 234 (499)
T COG0554 158 KGELLFGTIDTWLIWKLTGGK---VHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLG 234 (499)
T ss_pred cCCeEEecchhhheeeccCCc---eeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccccccccC
Confidence 999999999999999999973 89999999999999999999999999999999999999999999999998765456
Q ss_pred CCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHH
Q 009868 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAA 324 (523)
Q Consensus 246 ~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 324 (523)
..+||....||||||++|.|| +||++..+.||+++++++++++++.++++++++++|.+++ .-.|.+||++..+|.+
T Consensus 235 ~~vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~g--k~~YALEGsif~aGaa 312 (499)
T COG0554 235 AEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDG--KVTYALEGSIFVAGAA 312 (499)
T ss_pred CceeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccCC--eEEEEEecceeehhhH
Confidence 779999999999999999999 9999999999999999999988898889999999998743 4589999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHH
Q 009868 325 VQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVL 404 (523)
Q Consensus 325 l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l 404 (523)
++|++|.++..++..+.+.+|.+++.++|++|+|.|.|.++||||+++||.|+||+..++++||+||++|+|||+.|+++
T Consensus 313 vqWLrd~L~~i~~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~ 392 (499)
T COG0554 313 VQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVL 392 (499)
T ss_pred HHHHHHhcCccCchhHHHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888889999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhccc
Q 009868 405 DSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGE 484 (523)
Q Consensus 405 ~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~ 484 (523)
+.|++..+.+ ++++++.||+++|+++||++||+||.||+++...|.||+|||++|+.++|.|+|.+|.++.+
T Consensus 393 ~aM~~d~~~~--------~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~~~~ 464 (499)
T COG0554 393 EAMEKDSGIK--------LTRLRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELAELW 464 (499)
T ss_pred HHHHHhcCCC--------ceeEEEcCccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHHhhh
Confidence 9999988877 89999999999999999999999999999999999999999999999999999999985443
Q ss_pred CCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchh
Q 009868 485 RTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLA 519 (523)
Q Consensus 485 ~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~ 519 (523)
+..++|+|..+..++.++|..|++++++.+.|.
T Consensus 465 --~~~~~f~p~m~~~~r~~~y~~W~~AV~rs~~~~ 497 (499)
T COG0554 465 --PLDKEFEPGMDEEEREELYAGWKKAVKRSLGWR 497 (499)
T ss_pred --cccceeCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 478999999998888999999999999999884
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-98 Score=802.40 Aligned_cols=503 Identities=80% Similarity=1.271 Sum_probs=441.0
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCccc---CceEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDS---GLKAI 84 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~I~aI 84 (523)
|+||||+|||++|++|||.+|+++++.+.+++..+|.+||+||||++||++++++++++++++ +.++++ .|.+|
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~---~~~~~~i~~~i~aI 77 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKA---AAKGHNVDSGLKAI 77 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHc---CCCccccccceEEE
Confidence 589999999999999999999999999999998899999999999999999999999999873 344433 06999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|+|+|++++++||+++|+||+|+|+|+|.|+.++++++.+.+++..+.++++||+++++.++++||+||++|+||+|+++
T Consensus 78 g~s~q~~~~v~~dd~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~ 157 (512)
T PLN02295 78 GITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVKEAV 157 (512)
T ss_pred EEecCcceEEEEECCCCCCcccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHHHhh
Confidence 99999999999964489999999999999999999999986411234567999999999999999999999999999988
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCC
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWP 244 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l 244 (523)
+++..+|++++|||.|+|||+....++++|+|+||+|++||+++++|++++++.+||+.++||+++++++++|+|+.+ .
T Consensus 158 ~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~-~ 236 (512)
T PLN02295 158 KSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKG-W 236 (512)
T ss_pred hcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCccceeccccc-c
Confidence 655667999999999999993000037999999999999999999999999999999999999999999999999887 4
Q ss_pred C-CCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhH
Q 009868 245 I-TGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGA 323 (523)
Q Consensus 245 ~-~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (523)
. .|+||++|++|++|+++|+|+++|++.+++|||+++.+.+...+..++.+....++|..+...|+.|.++++++++|.
T Consensus 237 a~~g~pV~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~ 316 (512)
T PLN02295 237 PLAGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGA 316 (512)
T ss_pred ccCCCcEEEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHH
Confidence 4 499999999999999999999889999999999886655543334444555555666543333789999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHH
Q 009868 324 AVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDV 403 (523)
Q Consensus 324 ~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~ 403 (523)
+++|+++.++...++++++++++++++++|++|+|||.|+|+|+||+++||+|+||+..|+++||+||++|||||.+|++
T Consensus 317 ~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~ 396 (512)
T PLN02295 317 AVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDV 396 (512)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998875445778888887778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh-----ccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChh
Q 009868 404 LDSMQKDA-----VEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEE 478 (523)
Q Consensus 404 l~~l~~~~-----g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~ 478 (523)
++.|++.. +.+ +++|+++||+++|++|+||+||+||+||+++...|++++|||++|++++|.|++++
T Consensus 397 l~~l~~~~~~~~~~~~--------~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~ 468 (512)
T PLN02295 397 LDAMRKDAGEEKSHKG--------LFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEE 468 (512)
T ss_pred HHHHHhhhcccccCCC--------cceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHH
Confidence 99998641 335 78999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcccCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchhcccC
Q 009868 479 IFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADLSL 523 (523)
Q Consensus 479 ~a~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 523 (523)
++.++++ +..++|+|+++++++.++|++|+++|++++.|.++|+
T Consensus 469 ~~~~~~~-~~~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~~~~~~ 512 (512)
T PLN02295 469 IFASEKW-KNTTTFRPKLDEEERAKRYASWCKAVERSFDLADLSI 512 (512)
T ss_pred HHHHhcc-CCCeEECCCCCHHHHHHHHHHHHHHHHHHhcchhcCC
Confidence 7644665 5778999999998944679999999999999877763
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-97 Score=796.73 Aligned_cols=492 Identities=53% Similarity=0.865 Sum_probs=441.3
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
|+.|+||||+|||++|++|||.+|++++..+.+++..+|.+||+||||++||+++++++++++++ .+.++++ |.+|
T Consensus 3 m~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~-I~~I 78 (498)
T PRK00047 3 MKKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQ-IAAI 78 (498)
T ss_pred ccCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhH-eeEE
Confidence 34689999999999999999999999999999999889999999999999999999999999977 4666778 9999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|+|+|+++++++|+++|+|++|+|+|+|.|+.++++++.+. +..++++++||+++++.++++||+|+++|+||+|+++
T Consensus 79 gis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~ 156 (498)
T PRK00047 79 GITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRD--GYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERA 156 (498)
T ss_pred EEecCcceEEEEECCCCcCCcccceecccchHHHHHHHHhc--cchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHHHH
Confidence 99999999999996369999999999999999999999876 2345699999999999999999999999999999999
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCce-eEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCC
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGL-HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGW 243 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~ 243 (523)
.+...+|++++|||.|+|||+ + +++|+|+||+|++||+++++|++++|+.+||+.++||+|+++++++|+|+...
T Consensus 157 ~~~~~~~~~~~dyl~~~LTG~----~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~ 232 (498)
T PRK00047 157 EKGELLFGTIDTWLVWKLTGG----KVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYG 232 (498)
T ss_pred hcCCeEEeChHHhHhhhhcCC----CeeEeechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCccccccccccc
Confidence 875667889999999999973 4 89999999999999999999999999999999999999999999999997532
Q ss_pred -CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhch
Q 009868 244 -PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIA 321 (523)
Q Consensus 244 -l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (523)
+.+||||++|++|++|+++|+|+ ++|++.+++|||+++.+.+.+.|..++.+....+++.+. ....|.+++++.++
T Consensus 233 ~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~ 310 (498)
T PRK00047 233 FFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGID--GKVVYALEGSIFVA 310 (498)
T ss_pred cCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEEcC--CCcEEEEEeeHhhH
Confidence 66899999999999999999999 999999999999886665544566655555555555431 12279999999999
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHH
Q 009868 322 GAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401 (523)
Q Consensus 322 G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r 401 (523)
|.+++|+++.++....+++++++++..|++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.+|
T Consensus 311 g~~l~W~~~~~~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~r 390 (498)
T PRK00047 311 GSAIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTR 390 (498)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999988654456778888877888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHh
Q 009868 402 DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFD 481 (523)
Q Consensus 402 ~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~ 481 (523)
++++.|++..|.+ +++|+++||++||++|+||+|||||+||++++..|++++|||++|++++|.|++++++
T Consensus 391 ~~~e~l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~- 461 (498)
T PRK00047 391 DVLDAMQADSGIR--------LKELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL- 461 (498)
T ss_pred HHHHHHHHhcCCC--------CceEEEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-
Confidence 9999998645777 8999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhch
Q 009868 482 SGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNL 518 (523)
Q Consensus 482 ~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~ 518 (523)
.++. +..++|+|++++++|.+.|++|+++|+++++|
T Consensus 462 ~~~~-~~~~~~~P~~~~~~y~~~~~~~~~~~~~~~~~ 497 (498)
T PRK00047 462 KEQW-KIDRRFEPQMDEEEREKLYAGWKKAVKRTLAW 497 (498)
T ss_pred Hhhc-CCCeEECCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 5665 57889999999988336799999999998887
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-97 Score=795.55 Aligned_cols=496 Identities=57% Similarity=0.950 Sum_probs=442.9
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcc--cCceEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVD--SGLKAI 84 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~I~aI 84 (523)
.|+||||+|||++|++|||.+|++++..+.+++...|.+||.||||++||++++++++++++++ +..+. + |.+|
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~---~~~~~~~~-I~aI 77 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKL---REKGPSFK-IKAI 77 (504)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHc---CCCCccCc-eEEE
Confidence 3899999999999999999999999999999998889999999999999999999999999874 33444 7 9999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|+|+||++++++|+++|+||+|+|+|+|.|+.++++++.+.+ +..+.++++||+++++.++++||+|+++|+|++|+++
T Consensus 78 gis~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~-~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~ 156 (504)
T PTZ00294 78 GITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKY-GGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAV 156 (504)
T ss_pred EeecCcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhc-CcchHHHHhhCCcCCccchHHHHHHHHhcCHHHHHhh
Confidence 999999999999874699999999999999999999999875 2225677999999999999999999999999999988
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCC-
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGW- 243 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~- 243 (523)
+++..+|++++|||.|+|||+ +++++|+|+||+|++||+++++|++++++.+||+.++||+|+++++++|+|+...
T Consensus 157 ~~~~~~~~~~~dyl~~~LTG~---~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G~l~~~~~ 233 (504)
T PTZ00294 157 KEGTLLFGTIDTWLIWNLTGG---KSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAV 233 (504)
T ss_pred hcCCeEEEcHHHHHHHHhcCC---ceEEEEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccCccchhhc
Confidence 754567889999999999983 2689999999999999999999999999999999999999999999999997422
Q ss_pred -CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhch
Q 009868 244 -PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIA 321 (523)
Q Consensus 244 -l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (523)
+++|+||++|++|++|+++|+|+ ++|++.+++|||+++.+.+.+.+..++.+.+..++|..+...|+.|.+++++.++
T Consensus 234 ~~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (504)
T PTZ00294 234 PLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVA 313 (504)
T ss_pred CCCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhh
Confidence 67899999999999999999999 9999999999998865555444555555555555665422235689999999999
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHH
Q 009868 322 GAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401 (523)
Q Consensus 322 G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r 401 (523)
|.+++|+++.++...+++++++++++++++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.+|
T Consensus 314 g~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r 393 (504)
T PTZ00294 314 GAGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTN 393 (504)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998765568888888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHh
Q 009868 402 DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFD 481 (523)
Q Consensus 402 ~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~ 481 (523)
++++.|++..|.+ +++|+++||+++|++|+||+||++|+||++++..|++++|||++|++++|.|+|++++.
T Consensus 394 ~~~~~l~~~~g~~--------~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~ 465 (504)
T PTZ00294 394 DVIESMEKDAGIE--------LNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVK 465 (504)
T ss_pred HHHHHHHHhhCCC--------cceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHH
Confidence 9999998745777 89999999999999999999999999999999999999999999999999999999874
Q ss_pred cccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhchhc
Q 009868 482 SGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNLAD 520 (523)
Q Consensus 482 ~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~~~ 520 (523)
+++.+..++|+|++++++ | ++|++|+++|+.+.+|.+
T Consensus 466 -~~~~~~~~~~~P~~~~~~-y~~~~~~~~~~~~~~~~~~~ 503 (504)
T PTZ00294 466 -KLIRRSNSTFSPQMSAEE-RKAIYKEWNKAVERSLKWAK 503 (504)
T ss_pred -HhccCCCcEECCCCCHHH-HHHHHHHHHHHHHHHhcccc
Confidence 444235689999999999 7 569999999999998864
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-95 Score=776.35 Aligned_cols=492 Identities=58% Similarity=0.939 Sum_probs=442.8
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+|+||||+|||++|++|||.+|++++..+.+++..+|.+||.|||+++||+++++++++++++ .++.+++ |.+||+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~-i~aIgi 76 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDD-IAAIGI 76 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhh-eeEEEE
Confidence 479999999999999999999999999999999888999999999999999999999999987 4666778 999999
Q ss_pred ccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhc
Q 009868 87 TNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKK 166 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~ 166 (523)
++|+++++++|+++|+||+|+++|+|.|+.++++++.+.+ +.++++++||+++++.++++||+|+++|+||+|+++++
T Consensus 77 s~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~~ 154 (493)
T TIGR01311 77 TNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEG--YGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAER 154 (493)
T ss_pred ecCcceEEEEECCCCcCcccceeecccchHHHHHHHHHhc--chHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhhc
Confidence 9999999999973599999999999999999999999875 44689999999999999999999999999999999975
Q ss_pred CCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCCC
Q 009868 167 GDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPIT 246 (523)
Q Consensus 167 ~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~~ 246 (523)
...+|++++|||.|+|||.. +.++|+|+||+|+|||+++++|++++++.+||++++||+|+++++++|+++...+.+
T Consensus 155 ~~~~~~~~~dyl~~~LtG~~---~~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~v~~~~l~~ 231 (493)
T TIGR01311 155 GELLFGTIDTWLIWNLTGGK---VHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGA 231 (493)
T ss_pred CCeEEECHhHhhhhhccCCc---eEEeccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceecccccccCC
Confidence 55678899999999999921 689999999999999999999999999999999999999999999999997643678
Q ss_pred CCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHH
Q 009868 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAV 325 (523)
Q Consensus 247 g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 325 (523)
|+||++|++|++|+++|+|+ ++|++++++|||+++.+.+.+.+..++.+....++|.++. .+..|.+++++.++|.++
T Consensus 232 g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~g~~~ 310 (493)
T TIGR01311 232 EIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGG-KKPVYALEGSVFVAGAAV 310 (493)
T ss_pred CceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCC-CCceEEEEeehhhhHHHH
Confidence 99999999999999999999 9999999999998865555444555555555555554321 011489999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHH
Q 009868 326 QWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLD 405 (523)
Q Consensus 326 ~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~ 405 (523)
+|+++.++....++++++++++++++++++|+|||.|+|+|+||+++||+|+|++.+|+++||+||++|||||.+|++++
T Consensus 311 ~W~~~~~~~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~ 390 (493)
T TIGR01311 311 QWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLE 390 (493)
T ss_pred HHHHHHhCCCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987555678888888877888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccC
Q 009868 406 SMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485 (523)
Q Consensus 406 ~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~ 485 (523)
.|++..|.+ +++|+++||++||++|+||+||++|+||++++..|++++|||++|++++|.|+|++++ ++++
T Consensus 391 ~l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~ 461 (493)
T TIGR01311 391 AMEKDAGVE--------ITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALW 461 (493)
T ss_pred HHHHhcCCC--------CceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhc
Confidence 998644777 8999999999999999999999999999999999999999999999999999999987 7775
Q ss_pred CCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhch
Q 009868 486 TKTSTTFKPVLNEEFRKKKAESWCRAVERTFNL 518 (523)
Q Consensus 486 ~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~ 518 (523)
+..++|+|+++++++.++|++|+++++++++|
T Consensus 462 -~~~~~~~P~~~~~~y~~~~~~~~~~~~~~~~~ 493 (493)
T TIGR01311 462 -RVEKTFEPEMDEEEREARYAGWKEAVKRSLGW 493 (493)
T ss_pred -CCCcEECCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 57789999999988446799999999999887
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-94 Score=771.49 Aligned_cols=477 Identities=24% Similarity=0.395 Sum_probs=431.7
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|+||||+|||++|++++|.+|++++..+.+++...+.+|+.|||+++||+++++++++++++ .+.. ++ |.+|||+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~-~~-I~~Igis 75 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSIN---LEDE-DE-ILFVSFS 75 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh---CCCc-Cc-eEEEEEe
Confidence 58999999999999999999999999999998778899999999999999999999999886 3333 67 9999999
Q ss_pred cccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcC
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKG 167 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 167 (523)
+||+++++||+ +|+||+|+|+|+|.|+.++++++.+.+ +.++++++||+++++.++++||+|+++|+|++|+++++
T Consensus 76 ~~~~~~v~~D~-~g~pl~~~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~- 151 (505)
T TIGR01314 76 TQMHSLIAFDE-NWQPLTRLITWADNRAVKYAEQIKESK--NGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAAK- 151 (505)
T ss_pred cccceeEEECC-CcCCcccceeccccchHHHHHHHHhhc--CHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhcE-
Confidence 99999999998 899999999999999999999999875 45789999999999999999999999999999999986
Q ss_pred CceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------
Q 009868 168 DALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241 (523)
Q Consensus 168 ~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------ 241 (523)
|++++|||.|+||| ++++|+|+||+|++||+++++|++++++.+||++++||+++++++++|+|+.
T Consensus 152 ---~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~~~a~~~ 223 (505)
T TIGR01314 152 ---YLEIKGYIFQRLFG-----TYKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKM 223 (505)
T ss_pred ---EECHHHHHHHHHcC-----CceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCHHHHHHh
Confidence 99999999999999 8999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhc
Q 009868 242 GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAI 320 (523)
Q Consensus 242 ~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
| |++||||++|++|++|+++|+|+ +||++++++|||+++...+ ++|..++.+.. ++|.+ .++.|.+++++++
T Consensus 224 G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~ 296 (505)
T TIGR01314 224 G-IQSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVI-DKPKTDEKGRI--FCYAL---TKEHWVIGGPVNN 296 (505)
T ss_pred C-CCCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhheeeecc-CcCccCCCCce--EEEEe---cCCcEEEEeeecc
Confidence 5 88999999999999999999999 9999999999999876554 34555444432 33332 2467999999999
Q ss_pred hhHHHHHHHHHcCC----------CCCHHHHHHHHHhcC-CCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHH
Q 009868 321 AGAAVQWLRDSLGI----------ISSASEIEELALQVN-STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIA 389 (523)
Q Consensus 321 ~G~~l~w~~~~~~~----------~~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~ 389 (523)
+|.+++|+++.+.. .+.|+.|+++++++| ++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+
T Consensus 297 ~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~ 376 (505)
T TIGR01314 297 GGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMI 376 (505)
T ss_pred hHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCCCHHHHH
Confidence 99999999987642 135788999888775 7889999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHH
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGL 469 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~ 469 (523)
||++|||||.+|++++.+++..|.+ +++|+++||++||++|+||+||+||+||++++..|++++|||++|++
T Consensus 377 rAvlEgia~~~~~~~~~~~~~~g~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~ 448 (505)
T TIGR01314 377 RAALEGVIYNLYTVALALVEVMGDP--------LNMIQATGGFASSEVWRQMMSDIFEQEIVVPESYESSCLGACILGLK 448 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--------CcEEEEecCcccCHHHHHHHHHHcCCeeEecCCCCcchHHHHHHHHH
Confidence 9999999999999999997755766 89999999999999999999999999999999999999999999999
Q ss_pred hccccCChhHHhcccCCCCCcEEeCCCCHHHHHH-HHHHHHHHHHHHhch
Q 009868 470 AIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKK-KAESWCRAVERTFNL 518 (523)
Q Consensus 470 ~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~-~y~~~~~~~~~~~~~ 518 (523)
++|.+++++++ ..+. +..++|+|++++++.|+ .|++|+++++++...
T Consensus 449 ~~G~~~~~~~~-~~~~-~~~~~~~P~~~~~~~Y~~~y~~y~~~~~~~~~~ 496 (505)
T TIGR01314 449 ALGLIEDFSEV-STMV-GTTETHTPIEKNFEIYREISPIFINLSRSLLAE 496 (505)
T ss_pred hcCccCCHHHH-HHhc-CCCceECcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 6665 57889999999998874 699999999988753
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-94 Score=764.40 Aligned_cols=472 Identities=23% Similarity=0.334 Sum_probs=422.3
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
++||||+|||++|++|||.+|++++..+.+++..+|.+||.||||++||+++++++++++++. ..++ |.+||||
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~-----~~~~-I~aI~is 74 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH-----SLQD-VKALGIA 74 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC-----Cccc-eeEEEEe
Confidence 479999999999999999999999999999998889999999999999999999999998762 3467 9999999
Q ss_pred cccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcC
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKG 167 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 167 (523)
+|+|+++++|+ +|+|++|+++|+|.|+.++++++.+.. + .++++||+++++.++++||+|+++|+||+|+|+++
T Consensus 75 ~q~~~~v~~D~-~g~~l~p~i~w~D~R~~~~~~~l~~~~--~--~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~- 148 (484)
T PRK15027 75 GQMHGATLLDA-QQRVLRPAILWNDGRCAQECALLEARV--P--QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDK- 148 (484)
T ss_pred cCCCceEEECC-CcCCccccccccCccHHHHHHHHHHhc--c--hhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhh-
Confidence 99999999999 999999999999999999999999874 2 46789999999999999999999999999999986
Q ss_pred CceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------
Q 009868 168 DALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241 (523)
Q Consensus 168 ~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------ 241 (523)
|++++|||.|+||| ++++|+|+|++|++||+++++|++++++.+||+.++||+++++++++|+|+.
T Consensus 149 ---~~~~~dyl~~~LTG-----~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~~~a~~~ 220 (484)
T PRK15027 149 ---VLLPKDYLRLRMTG-----EFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAW 220 (484)
T ss_pred ---hcChHHHHHhhhcC-----CccccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccHHHHHHh
Confidence 89999999999999 8899999999999999999999999999999999999999999999999974
Q ss_pred CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhc
Q 009868 242 GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAI 320 (523)
Q Consensus 242 ~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
| |+ +|||++|++|++|+++|+|+ ++|++.+++|||+++...+ +++..++.+....+++ ..|+.|.+++.+.+
T Consensus 221 G-L~-~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 293 (484)
T PRK15027 221 G-MA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVS-EGFLSKPESAVHSFCH----ALPQRWHLMSVMLS 293 (484)
T ss_pred C-CC-CCeEEecccHHHHHHhccCcccCCcEEEEecCceEEEEec-CCcccCchhceeecce----ecCCceEEEEEehh
Confidence 4 65 69999999999999999999 9999999999998766544 3444443333223333 24778999999999
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQV-NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQ 399 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~-~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~ 399 (523)
+|.+++|+++.++. ..++++.+.++++ |++++++|+|||.|+|+|+|||++||+|+||+.+|+++||+||++|||||.
T Consensus 294 ~g~~~~W~~~~~~~-~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~ 372 (484)
T PRK15027 294 AASCLDWAAKLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYA 372 (484)
T ss_pred hHHHHHHHHHHhCC-ccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999998864 3477777777776 588899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHHhccccCChh
Q 009868 400 VKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGLAIGVFKEEE 478 (523)
Q Consensus 400 ~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~~~G~~~~~~ 478 (523)
+|++++.+++ .|.+ +++|+++||++||++|+||+||++|+||++.. ..+++++|||++|++++|.++|++
T Consensus 373 ~~~~~~~l~~-~g~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~ 443 (484)
T PRK15027 373 LADGMDVVHA-CGIK--------PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLI 443 (484)
T ss_pred HHHHHHHHHH-cCCC--------ccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHH
Confidence 9999999986 4777 89999999999999999999999999997765 445889999999999999999999
Q ss_pred HHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 479 IFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 479 ~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
++. ++. +..++|+|++++++.| +.|++|+++|.+++.+
T Consensus 444 ~~~-~~~-~~~~~~~P~~~~~~~Y~~~~~~y~~~y~~~~~~ 482 (484)
T PRK15027 444 ELL-PQL-PLEQSHLPDAQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_pred HHH-hhc-CCCceECCCHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 874 433 5678999999999887 5699999999987653
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-90 Score=746.64 Aligned_cols=481 Identities=25% Similarity=0.338 Sum_probs=421.3
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeec--cCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQF--YPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
|+|+||||+|||++|+++||.+|++++..+.+++.. .+.+||+||||++||+++++++++++++ .+..+++ |.+
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~-I~a 77 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASD-IAA 77 (520)
T ss_pred CcEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccc-eEE
Confidence 359999999999999999999999999998887644 4678999999999999999999999977 4556678 999
Q ss_pred EEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHH
Q 009868 84 IGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEA 163 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~ 163 (523)
||+|+|++++++||+ +|+|+.+ +.|.|.|+.++++++++.++...++++++||.++ +.++++||+|+++|+||+|+|
T Consensus 78 I~~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~~~~ 154 (520)
T PRK10939 78 VSATSMREGIVLYDR-NGTEIWA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDIYRQ 154 (520)
T ss_pred EEEECCcccEEEECC-CCCEeeC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHHHHH
Confidence 999999999999999 8999965 6799999999999999874111367899999875 678999999999999999999
Q ss_pred HhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc--
Q 009868 164 IKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK-- 241 (523)
Q Consensus 164 ~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~-- 241 (523)
+++ |++++|||.|+||| ++++|+|+||+|+|||+++++|++++++.+||+.++||+|+++++++|+|+.
T Consensus 155 ~~~----~~~~~dyl~~~LTG-----~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G~v~~~~ 225 (520)
T PRK10939 155 AHT----ITMISDWIAYMLSG-----ELAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGHVTAKA 225 (520)
T ss_pred hhe----EechhHhhhheeeC-----ceeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceeeeecHHH
Confidence 986 99999999999999 8999999999999999999999999999999999999999999999999963
Q ss_pred ----CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEecc
Q 009868 242 ----GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEG 316 (523)
Q Consensus 242 ----~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (523)
| |++|+||++|++|++|+++|+|+ ++|++++++|||+++...+.. +..++.+.....++ ..++.|.+++
T Consensus 226 A~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~ 299 (520)
T PRK10939 226 AAETG-LRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPA-PVTDPNMNIRINPH----VIPGMVQAES 299 (520)
T ss_pred HHhhC-CCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccc-cccCccccceecee----eeCCcceEee
Confidence 5 78899999999999999999999 999999999999886655543 44443322212222 2467899999
Q ss_pred chhchhHHHHHHHHHcCCC----------CCHHHHHHHHHhcC-CCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCC--
Q 009868 317 SIAIAGAAVQWLRDSLGII----------SSASEIEELALQVN-STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFT-- 383 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~----------~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~-- 383 (523)
.+.++|.+++||+++|+.. +.|++|++++++.| +++++ +|||.|++.|.+++++||+|+||+.+|
T Consensus 300 ~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~ 377 (520)
T PRK10939 300 ISFFTGLTMRWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEK 377 (520)
T ss_pred eeccceeeeehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCccc
Confidence 9999999999999987531 34788999888875 77777 599999987555568999999999987
Q ss_pred -CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHH
Q 009868 384 -SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALG 462 (523)
Q Consensus 384 -~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alG 462 (523)
+++||+||++|||||.+|++++.+++..|.+ +++|+++||+++|++|+||+|||+|+||++++..|++++|
T Consensus 378 ~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alG 449 (520)
T PRK10939 378 CNKATLFRALEENAAIVSACNLQQIAAFSGVF--------PSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALG 449 (520)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHH
Confidence 9999999999999999999999998744777 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhchh
Q 009868 463 AAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNLA 519 (523)
Q Consensus 463 aA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~~ 519 (523)
||++|++++|+|+|++++.+.+. +..++|+|++++++.| +.|++|+++|++++.+.
T Consensus 450 aA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~~ 506 (520)
T PRK10939 450 CAIAAGVGAGIYSSLAETGERLV-RWERTFEPNPENHELYQEAKEKWQAVYADQLGLV 506 (520)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHc-ccCceECcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998866665 4688999999998877 56999999998877653
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-91 Score=750.30 Aligned_cols=475 Identities=23% Similarity=0.304 Sum_probs=415.4
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
++||||+|||++|++|||.+|+++++.+.+++..+|.+||.||||++||+++++++++++++ .+.+.++ |.+|||+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~-I~~Igis 76 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNS-VKGIGFD 76 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhh-eEEEEec
Confidence 37899999999999999999999999999999889999999999999999999999999987 4556678 9999999
Q ss_pred cccceeEEeeCCCCccc---------cccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcCh
Q 009868 88 NQRETTVLWSKSTGCPL---------YNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVD 158 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l---------~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p 158 (523)
+| ++++++|+ +|+|| +|+|+|+|.|+.++++++++. . ++++++||+++++.++++||+|+++|+|
T Consensus 77 ~~-~s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~---~-~~~~~~tG~~~~~~~~~~kl~Wl~~~~P 150 (541)
T TIGR01315 77 AT-CSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAEAEKINAT---N-HNLLRYVGGKMSVEMEIPKVLWLKNNMP 150 (541)
T ss_pred cc-ccceEEcC-CCCeeecCCCCCcccceeEeecCcHHHHHHHHHHH---H-HHHHHHhCCeeCcchhHHHHHHHHHhCh
Confidence 99 89999998 89999 899999999999999999865 2 4788999999999999999999999999
Q ss_pred HHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhccccccc---CCCCCCCHHHHhhcCCCC---CCC----CC
Q 009868 159 AVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMN---LKTLDWDKPTLETLGIPA---EIL----PK 228 (523)
Q Consensus 159 e~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d---~~~~~W~~~ll~~~gi~~---~~L----P~ 228 (523)
|+|+++++ |++++|||.|+||| +.++|+++++.+++|| +++++||+++++.+||+. ++| |+
T Consensus 151 e~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~ 221 (541)
T TIGR01315 151 PELFARCK----FFDLTDFLTWRATG-----KEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGS 221 (541)
T ss_pred HHHHHhhh----hcchhhhheeeeec-----chhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCc
Confidence 99999986 99999999999999 8899999999989998 699999999999999984 234 99
Q ss_pred cccCCccccc-ccc------CCCCCCCcEEEeccchhhhhhcCC---C-CCC-------CeEEEecCceeeeeecCcccc
Q 009868 229 IVSNSEIIGK-IGK------GWPITGIPISGCLGDQHAAMLGQA---C-KKG-------EAKSTYGTGAFILMNTGEEVV 290 (523)
Q Consensus 229 i~~~~~~~G~-v~~------~~l~~g~pV~~g~gD~~aa~~g~g---~-~~g-------~~~~~~GTs~~~~~~~~~~~~ 290 (523)
++++++++|+ |+. | |++||||++|++|++|+++|+| + ++| ++.+++|||+++.... +.|.
T Consensus 222 i~~~~~~~G~~v~~~~A~~~G-L~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~-~~~~ 299 (541)
T TIGR01315 222 WMSPGELVGGGLTAEAAQELG-LPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMT-KGPV 299 (541)
T ss_pred ccCCCcccccccCHHHHHHhC-CCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEec-CCCc
Confidence 9999999999 863 5 8899999999999999999995 4 666 8889999998765444 3444
Q ss_pred ccCCCceeee-eeecCCCCCceeEeccchhchhHHHHHHHHHcCCC------------CCHHHHHH----HHHhcC-C--
Q 009868 291 KSKHGLLSTL-AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGII------------SSASEIEE----LALQVN-S-- 350 (523)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~------------~~~~~l~~----~a~~~~-~-- 350 (523)
.++ +.+..+ ++ ..++.|.++++++++|.+++|+++.+... +.|+.|++ ++++.+ +
T Consensus 300 ~~~-~~~~~~~~~----~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 374 (541)
T TIGR01315 300 FVP-GVWGPYRDA----LIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSI 374 (541)
T ss_pred cCC-ceeecccCc----cCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCcc
Confidence 433 322111 11 24678999999999999999999876411 23544444 344443 3
Q ss_pred ---CCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCH---HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCcc
Q 009868 351 ---TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSK---AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF 424 (523)
Q Consensus 351 ---~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~---~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~ 424 (523)
++|++|+|||.|+|+|+|||++||+|+||+.+|++ +||+||++|||||.+|++++.|++ .|.+ ++
T Consensus 375 ~~~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~-~g~~--------~~ 445 (541)
T TIGR01315 375 SYLVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNT-AGHT--------IK 445 (541)
T ss_pred ccCCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------cc
Confidence 37999999999999999999999999999999999 999999999999999999999987 4777 89
Q ss_pred EEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHH-HHH-
Q 009868 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEE-FRK- 502 (523)
Q Consensus 425 ~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~-~~~- 502 (523)
+|+++||++||++|+||+|||||+||+++...|++++|||++|++++|.|+|++++.+.|+ +..++|+|+++++ +.|
T Consensus 446 ~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~Y~ 524 (541)
T TIGR01315 446 SIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMS-KPGKTVWPRGDPAKKLHD 524 (541)
T ss_pred EEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhc-cCCcEEcCCcchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988866765 5678999999998 877
Q ss_pred HHHHHHHHHHHHHhch
Q 009868 503 KKAESWCRAVERTFNL 518 (523)
Q Consensus 503 ~~y~~~~~~~~~~~~~ 518 (523)
++|++|+++|++.+.+
T Consensus 525 ~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 525 RKYEIFLQLARTQQEY 540 (541)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5699999999886654
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-89 Score=743.72 Aligned_cols=485 Identities=20% Similarity=0.252 Sum_probs=422.6
Q ss_pred CceEEEEecCCCCceEEEEcC-CCCEEEEEEeeeeec------cCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 009868 6 EVFIGAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQF------YPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVD 78 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~------~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 78 (523)
+.|+||||+|||++|++|||. +|+++++.+.+++.. +|.+||+||||++||+++++++++++++ .+..+.
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~ 78 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDPA 78 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCChh
Confidence 458999999999999999995 999999999988843 5899999999999999999999999987 455667
Q ss_pred cCceEEEEccccceeEEeeCCCCcccc-----------ccccccccCCHHHHHHHHHhCCCChHHHHHHh-CCCCCccCh
Q 009868 79 SGLKAIGLTNQRETTVLWSKSTGCPLY-----------NAIVWMDARTSSVCRKLEKELPGGKTHFLEAV-GLPISTYFS 146 (523)
Q Consensus 79 ~~I~aIgis~~~~~~v~~d~~~g~~l~-----------~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~t-G~~~~~~~~ 146 (523)
+ |.+||||+|+++++++|+ +|+||+ |+|+|+|.|+.++++++.+......+++++++ |.++++.++
T Consensus 79 ~-I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 156 (548)
T PRK04123 79 A-VVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWF 156 (548)
T ss_pred h-EEEEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchH
Confidence 8 999999999999999999 899998 89999999999999999876410125677655 999999999
Q ss_pred HHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCC-CCCCCHHHHhhcC-----
Q 009868 147 AVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLK-TLDWDKPTLETLG----- 220 (523)
Q Consensus 147 ~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~-~~~W~~~ll~~~g----- 220 (523)
++||+||++|+||+|+++++ |++++|||.|+|||+......++|+++++.+++||++ +..||+++|+.+|
T Consensus 157 ~~kl~Wl~~~~P~~~~~~~~----~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~ 232 (548)
T PRK04123 157 WAKILHVLREDPAVYEAAAS----WVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPLLAR 232 (548)
T ss_pred HHHHHHHHhhCHHHHHHHhH----hccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHhccchhh
Confidence 99999999999999999986 8999999999999942212456899999999999999 5666999999996
Q ss_pred -CCCCCCCCcccCCcccccccc------CCCCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecCccccccC
Q 009868 221 -IPAEILPKIVSNSEIIGKIGK------GWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSK 293 (523)
Q Consensus 221 -i~~~~LP~i~~~~~~~G~v~~------~~l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~ 293 (523)
|+.++||+|+++++++|+|+. | |++|+||++|++|++|+++|+|+++|++++++||++++....+ ++.. .
T Consensus 233 ~i~~~llP~l~~~g~~~G~v~~~~a~~~G-L~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~GTs~~~~~~~~-~~~~-~ 309 (548)
T PRK04123 233 GLRDKLFTETWTAGEPAGTLTAEWAQRLG-LPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCDILLAD-KQRA-V 309 (548)
T ss_pred hhHhhcCCccccCCCcccccCHHHHHHhC-CCCCCeEEecchhhhhhhcccCcCCCcEEEEecCceEEEEecC-Cccc-c
Confidence 888999999999999999964 5 8899999999999999999999988999999999988765443 3322 1
Q ss_pred CCceeeeeeec-CCCCCceeEeccchhchhHHHHHHHHHcCC-----------CCCHHHHHHHHHhcC-CCCceEEEcCC
Q 009868 294 HGLLSTLAFKL-GPKAPTNYALEGSIAIAGAAVQWLRDSLGI-----------ISSASEIEELALQVN-STGGVYFVPAF 360 (523)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~-----------~~~~~~l~~~a~~~~-~~~gl~~~P~l 360 (523)
.+. ++.. ++..++.|.++++++++|.+++||++.++. ...|+++++++++.| ++++++|+|||
T Consensus 310 ~~~----~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l 385 (548)
T PRK04123 310 PGI----CGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWF 385 (548)
T ss_pred Cce----eecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccc
Confidence 222 2211 123467899999999999999999998742 134788888888774 88999999999
Q ss_pred CCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCc-cccHHHH
Q 009868 361 NGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGA-TVNNLLM 439 (523)
Q Consensus 361 ~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~ 439 (523)
.|+|+|+|||++||+|+||+.+|+++||+||++|||+|.+|++++.|++ .|.+ +++|+++||+ +||++|+
T Consensus 386 ~Ger~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~--------~~~i~~~GGg~s~s~~w~ 456 (548)
T PRK04123 386 NGRRTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFED-QGVP--------VEEVIAAGGIARKNPVLM 456 (548)
T ss_pred cCCCCCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------cceEEEeCCCcccCHHHH
Confidence 9999999999999999999999999999999999999999999999987 5767 8999999999 9999999
Q ss_pred HHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHH
Q 009868 440 QIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERT 515 (523)
Q Consensus 440 qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~ 515 (523)
||+||+||+||++++..|++++|||++|++++|.|++++++.+.+.....++|+|+++.++.| ++|++|+++++..
T Consensus 457 Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 457 QIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQPDPENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred HHHHHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEecCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999886666434567899999998877 5699999998876
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-89 Score=737.88 Aligned_cols=481 Identities=19% Similarity=0.229 Sum_probs=422.4
Q ss_pred eEEEEecCCCCceEEEEc-CCCCEEEEEEeeeee-----ccCC------CCeEEeCHHHHHHHHHHHHHHHHHHHhhCCC
Q 009868 8 FIGAIDQGTTSTRFIIYD-HQARPIGSHQVEFTQ-----FYPE------AGWVEHEPMEILESVRVCMAKALDKATADGH 75 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d-~~g~i~~~~~~~~~~-----~~~~------~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~ 75 (523)
|+||||+|||++|++||| .+|++++..+.+++. .+|. +||+||||++||+++++++++++++ .+.
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~~ 78 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE---LGV 78 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH---cCC
Confidence 789999999999999999 899999999999873 4664 8999999999999999999999987 455
Q ss_pred CcccCceEEEEccccceeEEeeCCCCccccc-----------cccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCcc
Q 009868 76 NVDSGLKAIGLTNQRETTVLWSKSTGCPLYN-----------AIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTY 144 (523)
Q Consensus 76 ~~~~~I~aIgis~~~~~~v~~d~~~g~~l~~-----------~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~ 144 (523)
++++ |++||+|+|++|++++|+ +|+||+| +|+|+|.|+.++++++++......+.++++||+++++.
T Consensus 79 ~~~~-I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~ 156 (536)
T TIGR01234 79 DPAD-VVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSE 156 (536)
T ss_pred CHHH-EEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCch
Confidence 6678 999999999999999998 8999983 99999999999999998763102367889999999999
Q ss_pred ChHHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCC---
Q 009868 145 FSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI--- 221 (523)
Q Consensus 145 ~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi--- 221 (523)
++++||+|+++|+||+|+++++ |++++|||.|+||| +.++|+|+++.++++|...+.|++++++.+|+
T Consensus 157 ~~~~kl~Wl~~~~pe~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~ 227 (536)
T TIGR01234 157 WFWAKILQITEEDPAIYQAADR----WIELADWIVAQLSG-----DIRRGRCTAGYKALWHESWGYPSASFFDELNPILN 227 (536)
T ss_pred hHHHHHHHHHhhChHHHHHHhh----hcCHHHHHHHHHhC-----CccccchhcccceeccccccCCCHHHHHHhcchhh
Confidence 9999999999999999999986 89999999999999 88999999999998877666669999999985
Q ss_pred ---CCCCCCCcccCCcccccccc------CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccc
Q 009868 222 ---PAEILPKIVSNSEIIGKIGK------GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVK 291 (523)
Q Consensus 222 ---~~~~LP~i~~~~~~~G~v~~------~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~ 291 (523)
++++||+|+++++++|+|+. | |++|+||++|++|++|+++|+|+ ++|++++++|||.++.... +++..
T Consensus 228 ~~lp~~~~p~i~~~g~~~G~v~~~~A~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~ 305 (536)
T TIGR01234 228 RHLPDKLFTDIWTAGEPAGTLTPEWAQRTG-LPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIG-DKQRA 305 (536)
T ss_pred hhhhhhcCCceecCCCcccccCHHHHHHhC-CCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEec-Ccccc
Confidence 78899999999999999963 5 88999999999999999999999 9999999999998865443 33332
Q ss_pred cCCCceeeeeeec-CCCCCceeEeccchhchhHHHHHHHHHcCCC-----------CCHHHHHHHHHhcC-CCCceEEEc
Q 009868 292 SKHGLLSTLAFKL-GPKAPTNYALEGSIAIAGAAVQWLRDSLGII-----------SSASEIEELALQVN-STGGVYFVP 358 (523)
Q Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~-----------~~~~~l~~~a~~~~-~~~gl~~~P 358 (523)
..+ +++.+ ++..++.|.++++++++|.+++|+++.+... +.|+.|++.+++.| ++++|+|+|
T Consensus 306 -~~~----~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP 380 (536)
T TIGR01234 306 -VPG----MCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALD 380 (536)
T ss_pred -CCc----eeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecc
Confidence 122 22221 1124678999999999999999999987421 23788888877764 889999999
Q ss_pred CCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCc-cccHH
Q 009868 359 AFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGA-TVNNL 437 (523)
Q Consensus 359 ~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~ 437 (523)
||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.+|++++.|++ .|.+ +++|+++||+ ++|++
T Consensus 381 ~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~--------~~~i~~~GGg~a~s~~ 451 (536)
T TIGR01234 381 WFNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTD-SGVP--------VEELMAAGGIARKNPV 451 (536)
T ss_pred hhccCCCCCCCCcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--------cceEEEeCCccccCHH
Confidence 999999999999999999999999999999999999999999999999987 5777 8999999999 99999
Q ss_pred HHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHh
Q 009868 438 LMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTF 516 (523)
Q Consensus 438 ~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~ 516 (523)
|+||+||+||+||++++..|++++|||++|++++|.|++++++.+.+.....++|+|++++++.| ++|++|+++|++.-
T Consensus 452 w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~ 531 (536)
T TIGR01234 452 IMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTPCSENAQRYEQLYARYQELAMSFG 531 (536)
T ss_pred HHHHHHHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECCChhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998886666424578999999998877 57999999998866
Q ss_pred ch
Q 009868 517 NL 518 (523)
Q Consensus 517 ~~ 518 (523)
++
T Consensus 532 ~~ 533 (536)
T TIGR01234 532 QY 533 (536)
T ss_pred hc
Confidence 55
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=727.13 Aligned_cols=471 Identities=29% Similarity=0.452 Sum_probs=429.0
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
||||+|||++|++|+|.+|+++++.+.+++..++.+||.+||+++||+.+++++++++++ .+.++.+ |.+||+++|
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~-I~gIgvs~~ 76 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQD-IKGIGISGQ 76 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCccc-EEEEEEecC
Confidence 589999999999999999999999999999888999999999999999999999999987 4566678 999999999
Q ss_pred cceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCc
Q 009868 90 RETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDA 169 (523)
Q Consensus 90 ~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~ 169 (523)
++|+++||+ +|++++|++.|+|.|..++++++.+.+ +.+.+++.+|+...+.++++||+|+++|+|++|+++++
T Consensus 77 ~~g~v~~d~-~g~~l~~~i~W~D~r~~~~~~~l~~~~--~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~--- 150 (481)
T TIGR01312 77 MHGLVLLDA-NGEVLRPAILWNDTRTAQECEELEAEL--GDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAK--- 150 (481)
T ss_pred CceeEEECC-CcCCCccchhhhccchHHHHHHHHHhc--CHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhhe---
Confidence 999999997 899999999999999999999998875 45678899999999999999999999999999999986
Q ss_pred eeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------CC
Q 009868 170 LFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------GW 243 (523)
Q Consensus 170 ~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------~~ 243 (523)
|++++|||.|+||| +.++|+|+||+||+||+++++|++++|+.+||++++||+|+++++++|+++. |
T Consensus 151 -~~~~~~yi~~~LtG-----~~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~a~~~G- 223 (481)
T TIGR01312 151 -VMLPKDYLRYRLTG-----EYVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLG- 223 (481)
T ss_pred -eeCchHHHhhhhcC-----CeeeeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHHHHHhC-
Confidence 89999999999999 8899999999999999999999999999999999999999999999999973 5
Q ss_pred CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchh
Q 009868 244 PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAG 322 (523)
Q Consensus 244 l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 322 (523)
|++|+||++|++|++|+++|+|+ ++|++++++|||+++...+ +++..++.+....+++. .|+.|.+++++.++|
T Consensus 224 l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g 298 (481)
T TIGR01312 224 LSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVT-DKPLPDPAGAVHGFCHA----LPGGWLPMGVTLSAT 298 (481)
T ss_pred CCCCCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEec-CCcccCcccceeeeeee----cCCceEEEeEehhhH
Confidence 78999999999999999999999 9999999999999876554 34555544444444443 367899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHH
Q 009868 323 AAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401 (523)
Q Consensus 323 ~~l~w~~~~~~~~~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r 401 (523)
.+++|+++.++. .+|++|++++++.| ++++++|+|||.|+|.|+||+.+||+|+|++.+|+++|++||++|||||.+|
T Consensus 299 ~~~~w~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~railEgia~~~~ 377 (481)
T TIGR01312 299 SSLEWFRELFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALR 377 (481)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998853 46888999888875 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHh
Q 009868 402 DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFD 481 (523)
Q Consensus 402 ~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~ 481 (523)
++++.|++..|.+ +++|+++||++||++|+|++||++|+||++++..|++++|||++|++++|.|++++++.
T Consensus 378 ~~~~~l~~~~~~~--------~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~ 449 (481)
T TIGR01312 378 DSLDILREAGGIP--------IQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCS 449 (481)
T ss_pred HHHHHHHHhcCCC--------cceEEEeccccCCHHHHHHHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999998744566 89999999999999999999999999999999999999999999999999999999886
Q ss_pred cccCCCCCcEEeCCCCHHHHH-HHHHHHHHHH
Q 009868 482 SGERTKTSTTFKPVLNEEFRK-KKAESWCRAV 512 (523)
Q Consensus 482 ~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~ 512 (523)
+.+. +..++|+|++++++.| ++|++|+++|
T Consensus 450 ~~~~-~~~~~~~P~~~~~~~y~~~~~~~~~~~ 480 (481)
T TIGR01312 450 EAVV-KQTESVLPIAENVEAYEELYERYKKLY 480 (481)
T ss_pred hhcc-CCCceECCCHHHHHHHHHHHHHHHHHh
Confidence 6765 5778999999998877 5699999875
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-88 Score=719.43 Aligned_cols=453 Identities=23% Similarity=0.302 Sum_probs=396.4
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeee--eccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT--QFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
+|+||||+|||++|++|||.+|++++..+.+++ ...|.+||+||||++||+++++++++++++. ...+ |.+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~-----~~~~-I~~I 75 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL-----TECH-IRGI 75 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC-----Cccc-eEEE
Confidence 489999999999999999999999999999876 3467899999999999999999999998762 2357 9999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|||+|+++++++|+ +|+||+|+|+|+|.|+.++++++.+.+ +.++++++||+++.+.++++||+|+++|+||+|+++
T Consensus 76 ~is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~~ 152 (470)
T PRK10331 76 TVTTFGVDGALVDK-QGNLLYPIISWKCPRTAAVMENIERYI--SAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQA 152 (470)
T ss_pred EEeccccceEEECC-CcCCccCceeecCCCcHHHHHHHHHhc--CHHHHHhhhCCCccccchHHHHHHHHHhCHHHHHHh
Confidence 99999999999999 999999999999999999999999875 567899999999999999999999999999999999
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc---
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK--- 241 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~--- 241 (523)
++ |++++|||.||||| ++++|+|+||+|++||+++++|++++++.+||++++||+++++++++|+|+.
T Consensus 153 ~~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~a 223 (470)
T PRK10331 153 HA----WLFISSLINHRLTG-----EFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAA 223 (470)
T ss_pred hh----hcCHHHHHHHhhcC-----ccccchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccccCHHHH
Confidence 86 99999999999999 8999999999999999999999999999999999999999999999999963
Q ss_pred ---CCCCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecCccccccCC----CceeeeeeecCCCCCceeEe
Q 009868 242 ---GWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKH----GLLSTLAFKLGPKAPTNYAL 314 (523)
Q Consensus 242 ---~~l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 314 (523)
| |++|+||++|++|++|+++|+|+.+|++++++|||+++.... ++|..+.. +.... + +..++.|..
T Consensus 224 ~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~-~~~~~~~~~~~~~~~~~--~---~~~~~~~~~ 296 (470)
T PRK10331 224 ALLG-LPVGIPVISAGHDTQFALFGSGAGQNQPVLSSGTWEILMVRS-AQVDTSLLSQYAGSTCE--L---DSQSGLYNP 296 (470)
T ss_pred HHhC-CCCCCeEEEccccHHHHHhCCCCCCCCEEEecchhhhheeec-CCCccccccccccccee--c---cccCceeee
Confidence 4 789999999999999999999997799999999998865444 33433321 21111 1 112456655
Q ss_pred ccchhchhHHHHHHHHHcCC-CCCHHHHHHHHHhc-CCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHH
Q 009868 315 EGSIAIAGAAVQWLRDSLGI-ISSASEIEELALQV-NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAV 392 (523)
Q Consensus 315 ~~~~~~~G~~l~w~~~~~~~-~~~~~~l~~~a~~~-~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv 392 (523)
++... .|.+++|++++|+. ...|++|++++++. |++++++|+|+|.|+| ||+|+||+.+|+++||+||+
T Consensus 297 ~~~~~-~g~~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l~rAv 367 (470)
T PRK10331 297 GMQWL-ASGVLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHFYRAA 367 (470)
T ss_pred chhhH-HHHHHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHHHHHHHH
Confidence 54344 44599999998853 24588999988877 4889999999999887 89999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhcc
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G 472 (523)
+|||||++|++++.|++..+.+ +++|+++||++||++|+||+|||||+||++++..|++++|||++|++++|
T Consensus 368 lEgia~~~~~~~~~l~~~~~~~--------~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 368 LEGLTAQLKRNLQVLEKIGHFK--------ASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--------CceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcC
Confidence 9999999999999998743556 89999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHhcccCCCCCcEEeCCCCHHHHHH
Q 009868 473 VFKEEEIFDSGERTKTSTTFKPVLNEEFRKK 503 (523)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~ 503 (523)
.|+|++++.+.|. +..++|+|++ +++.|+
T Consensus 440 ~~~~~~~a~~~~~-~~~~~~~P~~-~~~~y~ 468 (470)
T PRK10331 440 EFSSPEQARAQMK-YQYRYFYPQT-EPEFIE 468 (470)
T ss_pred CCCCHHHHHHHHh-hcceeECCCc-cHhhhh
Confidence 9999998866765 4568999994 455553
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-86 Score=710.61 Aligned_cols=483 Identities=30% Similarity=0.464 Sum_probs=427.3
Q ss_pred cCCceEEEEecCCCCceEEEEcCC-CCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCce
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLK 82 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~ 82 (523)
|+++|+||||+|||++|+++||.+ |++++..+.+++..+|.+||.||||++||+++++++++++++ ..+++.+ |.
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~-I~ 76 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDA-IA 76 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhh-ce
Confidence 456799999999999999999999 899999999999888999999999999999999999999987 4466778 99
Q ss_pred EEEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHH
Q 009868 83 AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKE 162 (523)
Q Consensus 83 aIgis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~ 162 (523)
|||||+|||+++++|+ +|+||+|+|+|+|.|+.++++++.+.+ +.++.+..||+++.+.++++||+|+++|+||+|+
T Consensus 77 aI~is~~~~g~vllD~-~g~~L~~~i~w~D~R~~~~~~~l~~~~--~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~ 153 (502)
T COG1070 77 AIGISGQGHGLVLLDA-NGEPLRPAILWNDTRAAEEVEELEERL--GGEALYARTGLQAMPGFTAPKLLWLKENEPDLFA 153 (502)
T ss_pred EEEEeccccceEEECC-CCCCccccceecchhhHHHHHHHHhhc--cchhhhhhcCCCcCccccHHHHHHHHhcCcHHHH
Confidence 9999999999999999 999999999999999999999999986 4467778899999999999999999999999999
Q ss_pred HHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCC-CCCCCcccCCcccccccc
Q 009868 163 AIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA-EILPKIVSNSEIIGKIGK 241 (523)
Q Consensus 163 ~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~-~~LP~i~~~~~~~G~v~~ 241 (523)
|+++ |++++|||.|+||| ++++|+|+||+|+|||+++++|+.++|+.+|+++ ++||+++++++++|+|+.
T Consensus 154 k~~~----il~~~dyl~~rLTG-----~~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~~G~l~~ 224 (502)
T COG1070 154 KAAK----ILLIKDYLRYRLTG-----EFATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTP 224 (502)
T ss_pred hhhh----eechHHHHHHHHhC-----CcccccccccccccccccccccCHHHHHHcCCChHHhCCCccCccceeccccH
Confidence 9986 99999999999999 9999999999999999999999999999999995 999999999999999974
Q ss_pred ------CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEe
Q 009868 242 ------GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYAL 314 (523)
Q Consensus 242 ------~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (523)
| |++++||++|++|++++++|+|+ ++|++..++||+.++...+. .+..++.+....+++ ..++.|..
T Consensus 225 e~A~~~G-l~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~ 298 (502)
T COG1070 225 EAAEELG-LPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATD-KPLDDPRGSIYTFCL----GLPGWFIV 298 (502)
T ss_pred HHHHHhC-CCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeecc-ccccCCccceeeecc----cCCCeEEE
Confidence 4 88999999999999999999999 99999999999988765554 355554444333322 24677888
Q ss_pred ccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhc---CCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHH
Q 009868 315 EGSIAIAGAAVQWLRDSLGIISSASEIEELALQV---NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARA 391 (523)
Q Consensus 315 ~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~---~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rA 391 (523)
.+...++|.+++|+++.++...++.++...+... +++.+++|+|||+|||.|.++|.+||.|.|++..|+++|++||
T Consensus 299 ~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~ra 378 (502)
T COG1070 299 MGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARA 378 (502)
T ss_pred EEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHHHH
Confidence 8889999999999999988653454444433332 3678999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhc
Q 009868 392 VLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 392 v~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
++||++|.++..++.|++..|.+ +++|+++||+|||++|+||+||++|+||.++...|++++|+|++++.+.
T Consensus 379 vlEgva~~l~~~~~~l~~~~g~~--------~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 379 VLEGVAFALADGLEALEELGGKP--------PSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAAL 450 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC--------ccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHh
Confidence 99999999999999999877888 8899999999999999999999999999999989999999988888888
Q ss_pred cccC-ChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 472 GVFK-EEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 472 G~~~-~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
+.+. +.+++.+.+. ..+++.|++++.+.| +.|++|++.|+++...
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~y~~~~~~~~~~y~~~~~~ 497 (502)
T COG1070 451 GGIYDSAEGALKAVV--DARRIIPDPERAAAYQELYERYRALYQALLAL 497 (502)
T ss_pred CCCCccHHHHhhccc--cccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7554 4455534432 378999999988777 5678999999998764
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-85 Score=698.49 Aligned_cols=449 Identities=24% Similarity=0.337 Sum_probs=390.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeee--eccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT--QFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++||||+|||++|++|||.+|++++..+.+++ ...|.+||.||||++||+++++++++++.+ ..+++ |.+||
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~-I~aI~ 75 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKH-IRGIA 75 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhc-eEEEE
Confidence 68999999999999999999999999998866 456889999999999999999999999864 23567 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
+++|+++++++|+ +|+||+|+|+|+|+|+.++++++.+.+ +.++++++||+++.+.++++||+|+++|+||+|++++
T Consensus 76 ~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 152 (465)
T TIGR02628 76 VTTFGVDGAPFDK-QGNQLYPIISWKCPRTAPVMDNIERLL--DAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERMH 152 (465)
T ss_pred EeccccceEEECC-CCCCccccccccCcccHHHHHHHHHhh--CHHHHHHHhCCCccccchHHHHHHHHHhChHHHHHHH
Confidence 9999999999999 899999999999999999999999875 5678999999999999999999999999999999998
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc----
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK---- 241 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~---- 241 (523)
+ |++++|||.|+||| ++++|+|+||+|+|||+++++|++++|+.+||++++||+++++++++|+|+.
T Consensus 153 ~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~ 223 (465)
T TIGR02628 153 K----FVFISSMITHRLTG-----EFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAA 223 (465)
T ss_pred H----hhCcHHHHHHHHhC-----CcccchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceeeCHHHHH
Confidence 6 88999999999999 8999999999999999999999999999999999999999999999999973
Q ss_pred --CCCCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchh
Q 009868 242 --GWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIA 319 (523)
Q Consensus 242 --~~l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (523)
| |++|+||++|++|++|+++|+|+.+|++++++|||+++.... +.|..+..+....+.+.. ...++.|.......
T Consensus 224 ~~G-l~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ 300 (465)
T TIGR02628 224 MLG-LPVGVPVISAGHDTQFALFGSGAEQNQPVLSSGTWEILMARS-QQVDTSLLSQYAGSTCEL-DSQAGLYNPAMQWL 300 (465)
T ss_pred HhC-CCCCCCEEecCccHHHHHhccCCCCCcEEEeccchhhheecc-CcCCCCcccccccccccc-ccCCceeeehhhhh
Confidence 4 788999999999999999999997799999999998765433 345544443322222211 12255666554444
Q ss_pred chhHHHHHHHHHcCCC----C-CHHHHHHHHHhc-CCCCceE-EEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHH
Q 009868 320 IAGAAVQWLRDSLGII----S-SASEIEELALQV-NSTGGVY-FVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAV 392 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~----~-~~~~l~~~a~~~-~~~~gl~-~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv 392 (523)
++| +++|+++.+... . .|++|++.++++ |++++++ |+|++. |.+||+|+||+.+|+++||+||+
T Consensus 301 ~g~-~~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l~rAv 371 (465)
T TIGR02628 301 ASG-VLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHIYRAA 371 (465)
T ss_pred hhh-HHHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCC--------cccceeEECCCCCCCHHHHHHHH
Confidence 444 899999977421 1 268889888877 5788998 888763 57899999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhcc
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G 472 (523)
+|||||.+|++++.+++..+.+ +++|+++||+++|++|+||+||++|+||++++..|++++|||++|++++|
T Consensus 372 lEgia~~~r~~~e~l~~~~~~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 372 LEGLTAQLKRNLQMLEQIGQFK--------ASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--------cceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcC
Confidence 9999999999999998743456 89999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHhcccCCCCCcEEeCC
Q 009868 473 VFKEEEIFDSGERTKTSTTFKPV 495 (523)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~P~ 495 (523)
.|+|++++.+.+. +..++|+|+
T Consensus 444 ~~~~~~~a~~~~~-~~~~~~~P~ 465 (465)
T TIGR02628 444 EYNSPEEAQAQMH-PQYRYFYPQ 465 (465)
T ss_pred ccCCHHHHHHHhh-ccceeeCCC
Confidence 9999999866765 457789996
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-80 Score=665.95 Aligned_cols=436 Identities=19% Similarity=0.251 Sum_probs=384.3
Q ss_pred cCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeec---cCCCCeEEeCHH----------HHHHHHHHHHHHHHHHH
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQF---YPEAGWVEHEPM----------EILESVRVCMAKALDKA 70 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~---~~~~g~~e~d~~----------~~~~~~~~~l~~~~~~~ 70 (523)
+.+.|+||||+|||++|++|||.+|+++++++++++.. ++.+|++||||+ .||+++..+++++.+
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~-- 82 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK-- 82 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH--
Confidence 34679999999999999999999999999999999844 345678999998 678999999999873
Q ss_pred hhCCCCcccCceEEEEccccceeEEeeCCCCccc-------------------cccccccccCCHHHHHHHHHhCCCChH
Q 009868 71 TADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPL-------------------YNAIVWMDARTSSVCRKLEKELPGGKT 131 (523)
Q Consensus 71 ~~~~~~~~~~I~aIgis~~~~~~v~~d~~~g~~l-------------------~~~i~w~D~R~~~~~~~~~~~~~~~~~ 131 (523)
++.++++ |.||++|+|+|+.|+||++.|+|| +|+++|+|.|+.++++++++.+ ++.+
T Consensus 83 --~~~~~~~-I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~-gg~~ 158 (556)
T PLN02669 83 --EKFPFHK-VVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAV-GGAA 158 (556)
T ss_pred --cCCChhh-EEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHc-CcHH
Confidence 3567788 999999999999999987568776 6899999999999999999886 4457
Q ss_pred HHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCce-eEeecchhcccccccCCCCC
Q 009868 132 HFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGL-HVTDVSNASRTMLMNLKTLD 210 (523)
Q Consensus 132 ~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~ 210 (523)
+++++||++.++.|+.+||+|+++|+||+|+++.+ |+.++|||.|+||| + ..+|+|+||+|+|||+++++
T Consensus 159 ~l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~----i~~~~dyl~~~LtG-----~~~~~D~sdasg~~l~Di~~~~ 229 (556)
T PLN02669 159 ELSKLTGSRAYERFTGPQIRKIYETQPEVYHDTER----ISLVSSFMASLLVG-----DYASIDETDGAGMNLMDIEKRC 229 (556)
T ss_pred HHHHHHCCcccccccHHHHHHHHHhChHHHHHHHh----hccHHHHHHHhhcC-----CCccccchhhhhhhhhccccCC
Confidence 89999999999999999999999999999999986 88999999999999 6 46999999999999999999
Q ss_pred CCHHHHhhcCCC-CCCCCCcccCCccccccccCC-----CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeee
Q 009868 211 WDKPTLETLGIP-AEILPKIVSNSEIIGKIGKGW-----PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILM 283 (523)
Q Consensus 211 W~~~ll~~~gi~-~~~LP~i~~~~~~~G~v~~~~-----l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~ 283 (523)
|++++|+.+++. +++||+++++++++|+|+..+ |++||||++|+||++|+++|+|+ +||++.+++|||+++.+
T Consensus 230 Ws~~ll~~~~~~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~ 309 (556)
T PLN02669 230 WSKAALEATAPGLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFG 309 (556)
T ss_pred cCHHHHHhhCccHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEE
Confidence 999999999544 378999999999999997422 88999999999999999999999 99999999999998766
Q ss_pred ecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCceEEEcCCCC
Q 009868 284 NTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFNG 362 (523)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~-~~~gl~~~P~l~G 362 (523)
.++ .+.+++.+.+ +++. ..|+.|+.+++..++|.+++|+++.++ ..+|+.+++++++.| +++|++++||+.|
T Consensus 310 ~~~-~~~~~~~~~~--~~~~---~~~~~y~~~~~~~ngg~~~~w~r~~~~-~~~~~~~~~~~~~~~~g~~g~l~~~~~~~ 382 (556)
T PLN02669 310 ITR-EPQPSLEGHV--FPNP---VDPESYMVMLCYKNGSLTREDIRNRCA-DGSWDVFNKLLEQTPPLNGGKLGFYYKEH 382 (556)
T ss_pred ecC-CCCCCCCcce--eeCc---cCCCCeEEEEEecchHHHHHHHHHHhc-cCcHHHHHHHHHhCCCCCCCEEEeeccCc
Confidence 553 4555544432 3322 237889999999999999999999885 246888999887774 7889998999999
Q ss_pred CCCCC----CCCCCceeEEcCCCC---------CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEe
Q 009868 363 LFAPW----WRDDARGVCIGITRF---------TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVD 429 (523)
Q Consensus 363 ~r~P~----~~~~arg~~~gl~~~---------~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~ 429 (523)
|+.|+ +++.++|.|+|++.. |+++|++||++||++|++|.+++.|+ .+.+ +++|+++
T Consensus 383 e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~--~~~~--------~~~i~~~ 452 (556)
T PLN02669 383 EILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFG--MPVP--------PKRIIAT 452 (556)
T ss_pred ccCCCCCCccchhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh--CCCC--------CcEEEEE
Confidence 99996 567788999999887 79999999999999999999999995 2455 7999999
Q ss_pred cCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhc
Q 009868 430 GGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 430 GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
||+++|+.|+||+|||||+||++++..|++++|||++|+++.
T Consensus 453 GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~~~~ 494 (556)
T PLN02669 453 GGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAAHGW 494 (556)
T ss_pred cChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999954
|
|
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-80 Score=631.56 Aligned_cols=501 Identities=45% Similarity=0.694 Sum_probs=443.0
Q ss_pred CceEEEEecCCCCceEEEEc-CCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYD-HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d-~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
.++++|||+||||+|++||| .+|+++..+..+++...|.+||+||||.++|+++++||+++.+.+...+..... |.+|
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~-~~~i 83 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVG-ATCI 83 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccc-cEEE
Confidence 67999999999999999999 699999999999999999999999999999999999999999887655555566 8889
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
|++.|+++.++|++.+|+|++++|.|+|.|+..++++++...+.........+|.++++.|+++||+||++|.|++....
T Consensus 84 gv~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~ 163 (516)
T KOG2517|consen 84 GVVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEVLKAK 163 (516)
T ss_pred EEEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHHHHHHH
Confidence 99999999999999999999999999999999999999987521111123679999999999999999999999994444
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCce-eEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccC-
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGL-HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKG- 242 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~- 242 (523)
..+...|.++..|+.++||+.. . +.+|.+|+|++++||..+..||..+++.+||+.+.||++..+++++|.+..+
T Consensus 164 ~~~~~~~~~~~twl~~~~t~~~---~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~~~~~~ 240 (516)
T KOG2517|consen 164 EEGGFDLGTFDTWLATGLTGRS---SCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGTTAAGD 240 (516)
T ss_pred HhcccchhhhhhheeecCCccc---eeccccccccccccccchhhhhhhhhhhhhhCCCcccCCcccccccccccccccc
Confidence 4445556677777777777732 2 6899999999999999999999999999999999999999999999999755
Q ss_pred C-CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhc
Q 009868 243 W-PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAI 320 (523)
Q Consensus 243 ~-l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
+ +++|+||.++.||++|+++|..+ ++|+.+.++||++++..+++..+....+|+++...|..+...+-.|.+++....
T Consensus 241 ~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~ 320 (516)
T KOG2517|consen 241 LGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAF 320 (516)
T ss_pred cccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccch
Confidence 2 77899999999999999999999 999999999999999988887777777899988888875433335899999999
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQV 400 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~ 400 (523)
+|..++|+++.++......++++++..+..+.+++|.|.|+|.|+|+|||++||+|.|++.+++..||.||++|+|+|++
T Consensus 321 ~~~~v~w~~d~~~i~~~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~A~leai~fqt 400 (516)
T KOG2517|consen 321 AGALVQWLRDNLGIIEELNEIEKLAAEVNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLARAALEAIAFQT 400 (516)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999998876555667777787777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccc--cCChh
Q 009868 401 KDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGV--FKEEE 478 (523)
Q Consensus 401 r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~--~~~~~ 478 (523)
|++|+.|++..+.+ +++++++||.++|++++|++||++|+||.++...|++++|||++|+.+.|. |.+.+
T Consensus 401 r~Il~am~~~~~~~--------i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~ 472 (516)
T KOG2517|consen 401 REILEAMERDGGHP--------ISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEE 472 (516)
T ss_pred HHHHHHHHHhcCCC--------cceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHH
Confidence 99999999865456 999999999999999999999999999999999999999999999999999 66666
Q ss_pred HHhcccCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchhcc
Q 009868 479 IFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLADL 521 (523)
Q Consensus 479 ~a~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~~~ 521 (523)
++. + ....++|+|+.+...+..+|+.|++++++.++|...
T Consensus 473 ~~~--~-~~~~~~~~P~~~~~~~~~ky~~w~~ave~~~~~~~~ 512 (516)
T KOG2517|consen 473 KAS--L-TGVGKVFRPNIDDKLLDKKYQIWLKAVERQLGYRRI 512 (516)
T ss_pred HHh--c-CCCcceecCCCCcHHHHHHHHHHHHHHHHHhhHHhh
Confidence 662 2 357899999998745557899999999999999653
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=635.28 Aligned_cols=428 Identities=21% Similarity=0.268 Sum_probs=362.2
Q ss_pred EEEecCCCCceEEEEcCC---CCEE-EEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 10 GAIDQGTTSTRFIIYDHQ---ARPI-GSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~---g~i~-~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++||+|||++|++|+|.+ |+++ .....+++...+++++.|||++.||+++.++++++... ..+ |.+||
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~-i~~Ig 72 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIA-PDSIG 72 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCC-ceEEE
Confidence 589999999999999987 5676 66777777788999999999999999999999998653 246 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
||+|+++++++|+ +|+||+|+|+|+|.|+.++++++.+.+ +.+++|++||+++.+.++++||+|+++|+|++|+|++
T Consensus 73 is~q~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~ 149 (454)
T TIGR02627 73 IDTWGVDFVLLDQ-NGQRVGDPVSYRDSRTDGVMAQVQSEL--GKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVA 149 (454)
T ss_pred EeccceeEEEEcC-CCCCccCceecCCCCCHHHHHHHHhhc--CHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHH
Confidence 9999999999999 999999999999999999999999875 5678999999999999999999999999999999998
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCC
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~ 245 (523)
+ |+.++|||.||||| +.++|+|+||+|+|||+++++|++++++.+||++++||+|+++++++|.+....+
T Consensus 150 ~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~~~~gl- 219 (454)
T TIGR02627 150 H----FLLIPDYLNYRLTG-----KKVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQG- 219 (454)
T ss_pred H----hCCHHHHHHHheeC-----CceeeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEeecccC-
Confidence 6 89999999999999 8899999999999999999999999999999999999999999999999864215
Q ss_pred CCCcEEE-eccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhH
Q 009868 246 TGIPISG-CLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGA 323 (523)
Q Consensus 246 ~g~pV~~-g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (523)
.|+||++ |++|++|+++|+|+ ++|++++++|||+++...+ +.|..++.+....+.+ ....++.|.+.+... ++
T Consensus 220 ~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~- 294 (454)
T TIGR02627 220 NQIPVVAVATHDTASAVVAAPLQGENAAYLSSGTWSLMGFES-QTPITNEQALAANITN--EGGADGRYRVLKNIM-GL- 294 (454)
T ss_pred CCCCEEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccC-CCCCCCHHHHHhcccc--ccccccEEEeecchh-hh-
Confidence 7999998 88999999999999 9999999999998765443 3444443221111111 012355666654443 33
Q ss_pred HHHHHHHHcCC---CCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCC-Cce------eEEcCCCCCCHHHHHHHHH
Q 009868 324 AVQWLRDSLGI---ISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDD-ARG------VCIGITRFTSKAHIARAVL 393 (523)
Q Consensus 324 ~l~w~~~~~~~---~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~-arg------~~~gl~~~~~~~~l~rAv~ 393 (523)
|+++.+.. ...|+++.+.+...|- |.|++.|++.|+|||. +++ .|+||+..|+++||+||++
T Consensus 295 ---W~~~~~~~~~~~~~~~~l~~~a~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l~RAv~ 366 (454)
T TIGR02627 295 ---WLLQRVCRERDINDLPALIEQAQALPA-----FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIF 366 (454)
T ss_pred ---HHHHHHHhhhccccHHHHHHHhcCCCC-----CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 66654431 2346666666654432 2356678899999995 444 4599999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccc
Q 009868 394 ESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 394 Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~ 473 (523)
|||||.+|++++.|++..+.+ +++|+++||+++|++|+||+||+||+||.+.. .|++++|||++|++++|.
T Consensus 367 Egva~~~r~~~e~l~~~~~~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 367 DSLALLYRQVLLELAELRGKP--------ISQLHIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDE 437 (454)
T ss_pred HHHHHHHHHHHHHHHHhhCCC--------cCEEEEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCC
Confidence 999999999999998754666 89999999999999999999999999998765 779999999999999999
Q ss_pred cCChhHH
Q 009868 474 FKEEEIF 480 (523)
Q Consensus 474 ~~~~~~a 480 (523)
|++++++
T Consensus 438 ~~~~~~~ 444 (454)
T TIGR02627 438 INDMAAF 444 (454)
T ss_pred cCCHHHH
Confidence 9999888
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-77 Score=630.72 Aligned_cols=447 Identities=20% Similarity=0.252 Sum_probs=375.1
Q ss_pred EEEcCCCCEEE---EEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccccceeEEeeC
Q 009868 22 IIYDHQARPIG---SHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSK 98 (523)
Q Consensus 22 ~l~d~~g~i~~---~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~~~~~v~~d~ 98 (523)
+-+|.+|+-+. .+++++. .++.+++.+|||+.||+++.++++++... .++ |.+||||+|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~e~~r~~~~-~~~~~~~~~~d~~~~~~~i~~~l~~~~~~-------~~~-I~~Igis~q~~~~v~lD~ 73 (471)
T PRK10640 3 ARYERECRSLTLREIHRFNNG-LHSQDGFDTWDVDSLESAIRLGLNKVCEE-------GIR-IDSIGIDTWGVDYVLLDK 73 (471)
T ss_pred eEEcCCCceEEEEEEEecCCC-CeeeCCeeEECHHHHHHHHHHHHHHHhhc-------CCC-ccEEEEcCCcccEEEECC
Confidence 34555554443 2445444 45789999999999999999999887542 357 999999999999999999
Q ss_pred CCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCceeeChhHHH
Q 009868 99 STGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWL 178 (523)
Q Consensus 99 ~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l 178 (523)
+|+||+|+|+|+|.|+.++++++.+.+ +.+++|++||+++.+.++++||+|+++|+|++|+++++ |++++|||
T Consensus 74 -~G~pL~pai~w~D~Ra~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~----~l~~~dyl 146 (471)
T PRK10640 74 -QGQRVGLPVSYRDSRTDGVMAQAQQQL--GKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAH----ALLIPDYF 146 (471)
T ss_pred -CCCCcCCceeccCCCCHHHHHHHHHhc--CHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhH----eecHHHHH
Confidence 899999999999999999999999885 56789999999999999999999999999999999986 89999999
Q ss_pred HHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCCCCCcEEE-eccch
Q 009868 179 IWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITGIPISG-CLGDQ 257 (523)
Q Consensus 179 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~~g~pV~~-g~gD~ 257 (523)
.|+||| ++++|+|+||+|+|||+++++||+++++.+||+.++||+++++++++|+++.. +..|+||++ |++|+
T Consensus 147 ~~~LTG-----~~~~d~s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~-~g~g~pVv~~g~~D~ 220 (471)
T PRK10640 147 SYRLTG-----KMNWEYTNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICP-QGNEIPVVAVASHDT 220 (471)
T ss_pred HHHHhC-----CcceeecHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeecc-cCCCCCEEEeCCCcH
Confidence 999999 89999999999999999999999999999999999999999999999998765 447899998 58999
Q ss_pred hhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCC--
Q 009868 258 HAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI-- 334 (523)
Q Consensus 258 ~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~-- 334 (523)
+|+++|+|+ ++|++++++|||+++...+ +.|..++.+......+. + ..++.|.+...+. | +|+++.++.
T Consensus 221 ~aa~~g~g~~~~g~~~~s~GT~~~~~~~~-~~p~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~--g---~W~~~~~~~~~ 292 (471)
T PRK10640 221 ASAVIASPLNDSDAAYLSSGTWSLMGFES-QTPFTNDTALAANITNE-G-GAEGRYRVLKNIM--G---LWLLQRVLQER 292 (471)
T ss_pred HHHhhccCCCCCCeEEEEeccHhhhheec-CCCcCCHHHHHhccCcc-C-CCCceEEEecchh--H---HHHHHHHHHHh
Confidence 999999999 9999999999998765444 34554433221111111 1 2356676665332 3 899997642
Q ss_pred -CCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCC-CCceeEEcCCCCC------CHHHHHHHHHhhhhhHHHHHHHH
Q 009868 335 -ISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRD-DARGVCIGITRFT------SKAHIARAVLESMCFQVKDVLDS 406 (523)
Q Consensus 335 -~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~-~arg~~~gl~~~~------~~~~l~rAv~Egia~~~r~~l~~ 406 (523)
..+|+++.+++++.|++++++ +| .|+|. ||| ++||+|+|++..| +++||+||++||+||.+|++++.
T Consensus 293 ~~~~~~~l~~~a~~~~g~~gli-~p--~ger~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~ 367 (471)
T PRK10640 293 QITDLPALIAATAALPACRFLI-NP--NDDRF--INPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHE 367 (471)
T ss_pred ccCCHHHHHHHHHhCCCCCcee-CC--Ccccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 245888888888888888887 58 79994 686 8999998777766 99999999999999999999999
Q ss_pred HHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCC
Q 009868 407 MQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERT 486 (523)
Q Consensus 407 l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~ 486 (523)
|++..+.+ +++|+++||+++|++|+||+||++|+||.+.+. |++++|||++|++++|.|++++++ ++++.
T Consensus 368 l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~ 437 (471)
T PRK10640 368 LAQLRGEP--------FSQLHIVGGGCQNALLNQLCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVS 437 (471)
T ss_pred HHHHhCCC--------cceEEEECChhhhHHHHHHHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHH
Confidence 98754666 899999999999999999999999999988764 899999999999999999999888 56553
Q ss_pred C--CCcEEeCCCCHHHHHHHHHHHHHHHHH
Q 009868 487 K--TSTTFKPVLNEEFRKKKAESWCRAVER 514 (523)
Q Consensus 487 ~--~~~~~~P~~~~~~~~~~y~~~~~~~~~ 514 (523)
. ..++|+|+++ .++.++|.+|+++++.
T Consensus 438 ~~~~~~~~~P~~~-~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 438 TNFPLTTFTPNPD-SEIARHVAQFQSLRQT 466 (471)
T ss_pred hcCCceEEcCCCh-HHHHHHHHHHHHHhcc
Confidence 2 4689999997 4667789999988765
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-73 Score=572.69 Aligned_cols=477 Identities=23% Similarity=0.320 Sum_probs=409.5
Q ss_pred CCceEEEEecCCCCceEEEEcCC-CCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
++.|++|||+||.|.|+++||.. |++++.+.+||+...+.++..||++.++|++++.++++++++ .++++.+ |++
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~-V~g 76 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPAD-VVG 76 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhH-eeE
Confidence 35799999999999999999985 999999999999999999999999999999999999999998 7899999 999
Q ss_pred EEEccccceeEEeeCCCCcccc---------ccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHh
Q 009868 84 IGLTNQRETTVLWSKSTGCPLY---------NAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMM 154 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~---------~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~ 154 (523)
|||+++ +|++++|+ +|+|+. ++|.|+|+|+.+++++++.. ..+++...|..+++.+-.+||+|++
T Consensus 77 IGvDaT-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~----~~~~L~~~GG~~SpEm~~PKlmwl~ 150 (544)
T COG1069 77 IGVDAT-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINAT----CHPVLDYYGGKISPEMMIPKLMWLK 150 (544)
T ss_pred EEEcce-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHHHHHHhh----chHHHHhhCCccChhhhHHHHHHHH
Confidence 999999 99999999 899984 47899999999999999986 2458899999999999999999999
Q ss_pred hcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccC-CCCCCCHHHHhhcCCCC-----CCCC-
Q 009868 155 ENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNL-KTLDWDKPTLETLGIPA-----EILP- 227 (523)
Q Consensus 155 ~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~-~~~~W~~~ll~~~gi~~-----~~LP- 227 (523)
+|.|++|+++.+ |+.+.|||.|+||| ...-...++..-..|.. +++-|++++++.+|++. ++||
T Consensus 151 ~~~p~~~~~a~~----~fdl~D~l~~~ltG-----~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~ 221 (544)
T COG1069 151 REAPAVWERAAH----IFDLADWLTWKLTG-----SIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPE 221 (544)
T ss_pred hhChHHHHHhhh----hhhHHHHHHHHhhc-----chhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCc
Confidence 999999999985 99999999999999 33333334444456777 55569999999999862 3465
Q ss_pred CcccCCcccccccc------CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeee
Q 009868 228 KIVSNSEIIGKIGK------GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTL 300 (523)
Q Consensus 228 ~i~~~~~~~G~v~~------~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~ 300 (523)
++++.|+.+|.+++ | |++|+.|.+|..|.+|+++|++. +|+.+...+|||++.+..++ ++.+ .+|.|..+
T Consensus 222 ~i~~~g~~vg~Lt~e~A~~lG-L~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~-~~~~-v~GvwGpy 298 (544)
T COG1069 222 DIVPAGEPVGGLTPEAAQELG-LPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSE-KPRF-VPGVWGPY 298 (544)
T ss_pred ccccCCccccccCHHHHHHhC-CCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecC-Ccee-cCcccccc
Confidence 77889999999974 4 89999999999999999999998 99999999999988765543 4433 35776543
Q ss_pred eeecCCCCCceeEeccchhchhHHHHHHHHHcCC--------CC----C-------HHHHHHHHHhc-CCCCceEEEcCC
Q 009868 301 AFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI--------IS----S-------ASEIEELALQV-NSTGGVYFVPAF 360 (523)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~--------~~----~-------~~~l~~~a~~~-~~~~gl~~~P~l 360 (523)
. +...|+.|.+||+++.+|..++||.+...- .. - ...|.+.+.+. |..++++++|+|
T Consensus 299 ~---~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f 375 (544)
T COG1069 299 D---GAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWF 375 (544)
T ss_pred c---cccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccc
Confidence 2 234699999999999999999999987421 11 1 12333334444 588999999999
Q ss_pred CCCCCCCCCCCCceeEEcCCCCCCHH---HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHH
Q 009868 361 NGLFAPWWRDDARGVCIGITRFTSKA---HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNL 437 (523)
Q Consensus 361 ~G~r~P~~~~~arg~~~gl~~~~~~~---~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~ 437 (523)
+|.|+|+-||+++|+|+|++++|+++ .+|||.+|+++|..|.++|.+++ .|.. |++|+++||..||++
T Consensus 376 ~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~-~g~~--------Id~l~~sGG~~KN~l 446 (544)
T COG1069 376 NGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFED-QGIA--------IDTLFASGGIRKNPL 446 (544)
T ss_pred cCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH-cCCe--------eeEEEecCCcccCHH
Confidence 99999999999999999999999999 99999999999999999999987 6999 999999999999999
Q ss_pred HHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCC-CHHHHH-HHHHHHHHHHHHH
Q 009868 438 LMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVL-NEEFRK-KKAESWCRAVERT 515 (523)
Q Consensus 438 ~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~-~~~~~~-~~y~~~~~~~~~~ 515 (523)
|+|++||++|+||+++...++.++|+||++++|.|.|.|+.+|+++|.. ...+..|++ +...+| +.|++|++++...
T Consensus 447 lmql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~-~~~~~~~~~~~~~~~y~~lyr~y~~l~~~~ 525 (544)
T COG1069 447 LMQLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSS-AVEKTLPPPPERAARYERLYRRYLQLHDDA 525 (544)
T ss_pred HHHHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhc-ccceecCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888874 444555555 766777 4688888877654
Q ss_pred h
Q 009868 516 F 516 (523)
Q Consensus 516 ~ 516 (523)
.
T Consensus 526 ~ 526 (544)
T COG1069 526 E 526 (544)
T ss_pred h
Confidence 4
|
|
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-52 Score=404.04 Aligned_cols=239 Identities=40% Similarity=0.671 Sum_probs=220.8
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|+||||+|||++|++|+|.+|+++...+.+++...+.+|+.||||++||+.+++++++++++ .+.++++ |.+|+||
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~-I~aI~is 76 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQ-IKAIGIS 76 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGG-EEEEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccce-eEEEEec
Confidence 78999999999999999999999999999999999999999999999999999999999998 4567788 9999999
Q ss_pred cccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcC
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKG 167 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 167 (523)
+|+++++++|+ +|+|++|+++|+|+|+.++++++.+. ...+++++.+|.++++.++++|++||++|+||+|+++++
T Consensus 77 ~~~~~~v~~D~-~~~pl~~~i~w~D~R~~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~- 152 (245)
T PF00370_consen 77 GQGHGLVLLDK-DGKPLRPAILWMDTRAAEEAEELNEE--GSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAAK- 152 (245)
T ss_dssp E-SSEEEEEET-TSSBSSCEE-TT-CTTHHHHHHHHHH--THHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHHE-
T ss_pred cccCCcceecc-ccccccccccccccchhhHHHHHHhh--cCcceeeeeccccccccchHHHHHHHHHhCchhhhhhhh-
Confidence 99999999999 89999999999999999999999987 367899999999999999999999999999999999986
Q ss_pred CceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------
Q 009868 168 DALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241 (523)
Q Consensus 168 ~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------ 241 (523)
|++++|||.|+||| +.++|+|+||+||+||+++++|++++++.+||+.++||+|+++++++|+++.
T Consensus 153 ---~~~~~dyl~~~LtG-----~~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~~~a~~~ 224 (245)
T PF00370_consen 153 ---FLTLSDYLAYKLTG-----RAATDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTPEAAKEL 224 (245)
T ss_dssp ---EEEHHHHHHHHHHS-----C-EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEHHHHHHH
T ss_pred ---cccHHHHHHhhccc-----cccccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECHHHHHHh
Confidence 99999999999999 8999999999999999999999999999999999999999999999999974
Q ss_pred CCCCCCCcEEEeccchhhhhhc
Q 009868 242 GWPITGIPISGCLGDQHAAMLG 263 (523)
Q Consensus 242 ~~l~~g~pV~~g~gD~~aa~~g 263 (523)
| |++|+||++|++|++|+++|
T Consensus 225 G-l~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 225 G-LPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp T-STTTEEEEEEEEHHHHHHHH
T ss_pred C-CCCCCEEEEEchHHHHhhcC
Confidence 5 89999999999999999987
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X .... |
| >KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=370.78 Aligned_cols=479 Identities=21% Similarity=0.263 Sum_probs=365.4
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCC----CC-------eEEeCHH-HHHHHHHHHHHHHHHHHhh
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPE----AG-------WVEHEPM-EILESVRVCMAKALDKATA 72 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~----~g-------~~e~d~~-~~~~~~~~~l~~~~~~~~~ 72 (523)
....+||+|++|+.+|++++|.+.+|+.+..+.+....|+ +| ..-..|- .|++++-- +++++++
T Consensus 7 ~~~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDl----ll~kl~~ 82 (545)
T KOG2531|consen 7 PDRSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDL----LLDKLRE 82 (545)
T ss_pred CCceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHH----HHHHHHH
Confidence 4456899999999999999999999999998888765552 22 2333454 56555543 4444444
Q ss_pred CCCCcccCceEEEEccccceeEEeeCCCCc-cc-------------------cccccccccCCHHHHHHHHHhCCCChHH
Q 009868 73 DGHNVDSGLKAIGLTNQRETTVLWSKSTGC-PL-------------------YNAIVWMDARTSSVCRKLEKELPGGKTH 132 (523)
Q Consensus 73 ~~~~~~~~I~aIgis~~~~~~v~~d~~~g~-~l-------------------~~~i~w~D~R~~~~~~~~~~~~~~~~~~ 132 (523)
++.+..+ |.||+-++|.|+.|.|.+ .++ .| .....|+|..+..++++++..+ |+.++
T Consensus 83 ~~~d~~k-V~aiSGagQQHGsVyWs~-ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~V-GG~~~ 159 (545)
T KOG2531|consen 83 AGFDLSK-VMAISGAGQQHGSVYWSK-GAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAV-GGAQE 159 (545)
T ss_pred cCCCHHH-hhhhcccccccceeeehh-hhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHh-ccHHH
Confidence 6888888 999999999999999976 332 22 2346899999999999999998 79999
Q ss_pred HHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCC
Q 009868 133 FLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWD 212 (523)
Q Consensus 133 ~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~ 212 (523)
+.+.||.+.+..|+.++|+.+.+.+||.|+++.+ +-.+++|++..|-|+ ...+|+|++|++.|+|+++++|+
T Consensus 160 la~LTGSRAy~RFTGpQIrKi~~~~pe~Ye~Ter----ISLVSsFlaSlllG~----~a~id~sDgsGMNL~dIr~k~ws 231 (545)
T KOG2531|consen 160 LAKLTGSRAYERFTGPQIRKIYQQEPEAYEKTER----ISLVSSFLASLLLGS----YAPIDESDGSGMNLLDIRKKKWS 231 (545)
T ss_pred HHHhhcchhhhhcccHHHHHHHHhChHhhhccce----eehHHHHHHHHHhcc----ccceecccccCchHHHHhhhhhh
Confidence 9999999999999999999999999999999986 888999999999995 67799999999999999999999
Q ss_pred HHHHhhcCCC-CCCCCCcccCCccccccccCC-----CCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeeecC
Q 009868 213 KPTLETLGIP-AEILPKIVSNSEIIGKIGKGW-----PITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMNTG 286 (523)
Q Consensus 213 ~~ll~~~gi~-~~~LP~i~~~~~~~G~v~~~~-----l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~ 286 (523)
+++|+.+--+ +++|...+++..+.|+|...+ +++++.|++-.||+.+++.|.-..++++.+|+|||..+.+.+.
T Consensus 232 ~~~L~~~apdL~~KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~ 311 (545)
T KOG2531|consen 232 KALLDACAPDLEEKLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTK 311 (545)
T ss_pred HHHHhhhChhHHHHhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcC
Confidence 9999988533 346778888999999998653 7899999999999999999998877999999999998887775
Q ss_pred ccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCceEEEcCCCCCCC
Q 009868 287 EEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFNGLFA 365 (523)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~ 365 (523)
++.+.+.|- .+|+. ..++.|+..-+..||+.+-+-+|+... ..+|+.+++...+.| |.+|.+=+=|=.+|-.
T Consensus 312 -~~~p~~egH--vf~hP---~~~~~YM~mlCfkNgSL~RE~ir~~~~-~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIv 384 (545)
T KOG2531|consen 312 -EYHPSPEGH--VFCHP---TDPNHYMGMLCFKNGSLTRERIRNESA-NGSWDKFNEILDSTPSGNNGNLGVYFPEREIV 384 (545)
T ss_pred -CCCCCCCcc--eeccC---CCccceEEEEEecCChHHHHHHhhccc-CCCHHHHHHHhccCcCCCCCceeEeccccccc
Confidence 455555543 34432 347789999999999999888887543 468999999777665 6555422211134555
Q ss_pred CC-------CCCCC-ceeE--EcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcccc
Q 009868 366 PW-------WRDDA-RGVC--IGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVN 435 (523)
Q Consensus 366 P~-------~~~~a-rg~~--~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s 435 (523)
|. |+-.- .+.. .++-...+|.+-+||++||-+...|...+.|-- ...+ ..+|+++||.|+|
T Consensus 385 P~~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~--~~~~-------~~rilvtGGAS~N 455 (545)
T KOG2531|consen 385 PSVPKGTLRFIFENKELSAERIEVAKFSDPEIEARALVEGQFLSKRARAEPLGF--KSNP-------PTRILVTGGASRN 455 (545)
T ss_pred CCCCccceEEEecCCccchhhcccccCCCchHHHHHHHHHhHhHhhhhhccccC--CCCC-------CceEEEecCcccc
Confidence 51 11110 0000 133445579999999999999999998887732 2221 7999999999999
Q ss_pred HHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccC-Chh-HHhcc-----cC-CCCCcEEeCCCCHHHHH-HHHH
Q 009868 436 NLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFK-EEE-IFDSG-----ER-TKTSTTFKPVLNEEFRK-KKAE 506 (523)
Q Consensus 436 ~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~-~~~-~a~~~-----~~-~~~~~~~~P~~~~~~~~-~~y~ 506 (523)
+...|++|||||.||++.+..+++++|+|+-|++|.-... ... ..... .. .+..-..+|.+++.+.| .+.+
T Consensus 456 ~~Ilq~iadVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~~~~~~~~~~p~~~~L~~~p~~~~~e~Y~~ll~ 535 (545)
T KOG2531|consen 456 EAILQIIADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFSNKTNYLSLTPSKLELACEPDSANWEIYGPLLK 535 (545)
T ss_pred HHHHHHHHHHhCCCeEeecCCchhhHHHHHHHHHHHHhccccccccceeeccccccCCccceeeecCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999863211 000 00000 00 01223456777766666 3566
Q ss_pred HHHHHHHH
Q 009868 507 SWCRAVER 514 (523)
Q Consensus 507 ~~~~~~~~ 514 (523)
+++++.+.
T Consensus 536 ~~~e~e~~ 543 (545)
T KOG2531|consen 536 RLSELEDT 543 (545)
T ss_pred HHHHHHHh
Confidence 77766554
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=268.77 Aligned_cols=189 Identities=39% Similarity=0.663 Sum_probs=160.4
Q ss_pred eEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCC---CCC----HHHHHH
Q 009868 271 AKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI---ISS----ASEIEE 343 (523)
Q Consensus 271 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~---~~~----~~~l~~ 343 (523)
+++++|||+++.+.. ++|+.+.++++..+... ..++.|.++++.+++|.+++|+++.++. ..+ ++.+..
T Consensus 1 a~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~ 76 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVS-SEPVISPPGFWNPFADH---VIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAE 76 (198)
T ss_dssp EEEEESSSEEEEEEE-TSTTTTSSSSEEEEEEE---TSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHH
T ss_pred CEEEehhhhHHhhEe-CccccCCCeeEEeecCc---CCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHH
Confidence 478999999987744 56776667776554411 2467899999999999999999998643 111 133332
Q ss_pred --HHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhcccccccccc
Q 009868 344 --LALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAK 421 (523)
Q Consensus 344 --~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~ 421 (523)
.....+++++++|+|+|.|+|+|+||++++|+|+|++.+|+++|++||++||++|.+|++++.|++..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~------- 149 (198)
T PF02782_consen 77 LEAAASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIP------- 149 (198)
T ss_dssp HHHHHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-------
T ss_pred HHhhhccCcccceeeeeccccCcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhcccccccc-------
Confidence 22334578899999999999999999999999999999999999999999999999999999999866888
Q ss_pred CccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhc
Q 009868 422 SEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAI 471 (523)
Q Consensus 422 ~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~ 471 (523)
+++|+++||+++|++|+|++||++|+||++++..|++++|||++|++|+
T Consensus 150 -~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 150 -IRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp -ESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred -ceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-12 Score=124.19 Aligned_cols=121 Identities=24% Similarity=0.286 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQV 400 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~ 400 (523)
+|..++=+.+.++. +++++++++.+... |.=.+.++..+- ....+..+....+++++++++++++++.+
T Consensus 126 tg~f~e~~a~~l~~--~~~e~~~~~~~~~~-------~~~~~~~c~vf~--~s~vi~~l~~g~~~~di~~~~~~~va~~i 194 (248)
T TIGR00241 126 TGRFLEVTARRLGV--SVEELGSLAEKADR-------KAKISSMCTVFA--ESELISLLAAGVKKEDILAGVYESIAERV 194 (248)
T ss_pred ccHHHHHHHHHcCC--CHHHHHHHHhcCCC-------CCCcCCEeEEEe--chhHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 56777777777775 57788777654311 111112221110 12233345556789999999999999999
Q ss_pred HHHHHHHHhhhccccccccccCcc-EEEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHHH
Q 009868 401 KDVLDSMQKDAVEKGVIKDAKSEF-LLRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAFA 466 (523)
Q Consensus 401 r~~l~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~l 466 (523)
+..+..+ . ++ +|+++||+++|+.|.|.+++.++.||.+++.++ .+|+|||++
T Consensus 195 ~~~~~~~------~--------~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 195 AEMLQRL------K--------IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHhhc------C--------CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 9765332 2 34 899999999999999999999999999998874 899999974
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-07 Score=93.05 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=88.3
Q ss_pred EeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHH
Q 009868 313 ALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAV 392 (523)
Q Consensus 313 ~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv 392 (523)
++.-|...+|.-++-..+.++. +.+++.+++.+... |.--+.+|-.+-. .-++.=+....+++|++.++
T Consensus 295 MNDKCAAGTGrFLE~mA~~Lgi--~leEl~~lA~~a~~-------pv~ISS~CtVFAE--SEVIslla~G~~reDIaAGL 363 (432)
T TIGR02259 295 MNDRCAAGCGRYLGYIADEMNM--GLHELGPLAMKSSK-------PARINSTCTVFAG--AELRDRLALGDKREDILAGL 363 (432)
T ss_pred ecCcccccchHHHHHHHHHcCC--CHHHHHHHHhcCCC-------CCCcCCcceEEeh--HHHHHHHHCCCCHHHHHHHH
Confidence 3344555678899988888876 56777776654311 1111122211100 00111134467999999999
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc-----CCceeecCCCC-ccHHHHHHH
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-----GSPVIRPADIE-TTALGAAFA 466 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl-----g~pv~~~~~~e-~~alGaA~l 466 (523)
..+|+-.+...+..+. +. -+.|.++||.++|+.+.+.+.+.+ +.+|.+++.++ .+|+|||+.
T Consensus 364 ~~SIA~Rv~s~l~r~~---~i---------~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~ 431 (432)
T TIGR02259 364 HRAIILRAISIISRSG---GI---------TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEF 431 (432)
T ss_pred HHHHHHHHHHHHhccc---CC---------CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHh
Confidence 9999987766654432 22 357999999999999999999999 57788877554 789999987
Q ss_pred H
Q 009868 467 A 467 (523)
Q Consensus 467 A 467 (523)
|
T Consensus 432 a 432 (432)
T TIGR02259 432 A 432 (432)
T ss_pred C
Confidence 5
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-05 Score=76.05 Aligned_cols=138 Identities=19% Similarity=0.082 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEc-----CCCCCCHHHHHHHHHhh
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIG-----ITRFTSKAHIARAVLES 395 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~g-----l~~~~~~~~l~rAv~Eg 395 (523)
||..+.=+.+.+....+++++.+++.+-..+.-=+.+-.+.|...+....+.+.+.|+ +.....++|++++++..
T Consensus 126 GGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIaasl~~~ 205 (277)
T PRK13317 126 GGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDILAGVIGL 205 (277)
T ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhhhhhhhccCCCHHHHHHHHHHH
Confidence 4445544555553336799999998763211111223344443222234566666655 34457899999999999
Q ss_pred hhhHHHHHHHHHHhhhccccccccccCccEEEEec-CccccHHHHHHHHhhc---CCceeecCCC-CccHHHHHHHHH
Q 009868 396 MCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDG-GATVNNLLMQIQADLL---GSPVIRPADI-ETTALGAAFAAG 468 (523)
Q Consensus 396 ia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~G-G~a~s~~~~qi~Advl---g~pv~~~~~~-e~~alGaA~lA~ 468 (523)
++..+-...-.+.+. .. +++|+++| |.++|+.+++.+++.+ +.++.+++.+ -.+|+|||+.|.
T Consensus 206 v~~~I~~lA~~~ar~--~~--------~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 206 VGEVITTLSIQAARE--KN--------IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHh--cC--------CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 988877664433332 23 67899999 6889999999999999 7888888754 488999999864
|
|
| >COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.1e-05 Score=76.22 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=65.3
Q ss_pred ccCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCce
Q 009868 3 KAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLK 82 (523)
Q Consensus 3 ~~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~ 82 (523)
+++..+++|||||.|++|++++|.+|+++...+.+++. ..+.+.+.+.+.+.+++++++ .+ ...+ +.
T Consensus 2 ~~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~---~~-~~~~-~i 68 (314)
T COG1940 2 NPEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPT--------PDPEEAILEAILALVAELLKQ---AQ-GRVA-II 68 (314)
T ss_pred CccCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCC--------CCchhHHHHHHHHHHHHHHHh---cC-CcCc-eE
Confidence 45567899999999999999999999999988888872 233357888888888888776 22 2234 66
Q ss_pred EEEEccccceeEEeeCCCC-ccccccccccc
Q 009868 83 AIGLTNQRETTVLWSKSTG-CPLYNAIVWMD 112 (523)
Q Consensus 83 aIgis~~~~~~v~~d~~~g-~~l~~~i~w~D 112 (523)
+||+++ ++.+|. .. ....|.+.|.+
T Consensus 69 GIgi~~----pg~~~~-~~~~~~~~~~~~~~ 94 (314)
T COG1940 69 GIGIPG----PGDVDN-GTVIVPAPNLGWWN 94 (314)
T ss_pred EEEecc----ceeccC-CcEEeecCCCCccc
Confidence 677766 566665 22 23345556654
|
|
| >PRK13311 N-acetyl-D-glucosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.3e-05 Score=73.82 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=58.1
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.+++.... ... +.+|||+
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~-~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGV-QGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCC-CceEEEE
Confidence 36999999999999999999999987776654 236777777777766665332 123 5678888
Q ss_pred cccceeEEeeCCCCccccccc-cccc
Q 009868 88 NQRETTVLWSKSTGCPLYNAI-VWMD 112 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i-~w~D 112 (523)
. +.++|.++|....+.+ .|.+
T Consensus 64 ~----pG~vd~~~g~i~~~~~~~w~~ 85 (256)
T PRK13311 64 I----PGLPNADDGTVFTANVPSAMG 85 (256)
T ss_pred e----cCcEECCCCEEEccCCCcccC
Confidence 7 3466864565443333 3654
|
|
| >PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.6e-05 Score=74.71 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=60.9
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
+..+++|||+|.|++|++++|.+|+++.+.+.+++. ..+++. .+.+.+.+++++++ .+ .+ |.+|
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~---~~---~~-i~gi 65 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRR---FN---AR-CHGI 65 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHH---cC---CC-eeEE
Confidence 456899999999999999999999999877666541 123444 77778888888765 22 46 9999
Q ss_pred EEccccceeEEeeCCCCcccc-cccc
Q 009868 85 GLTNQRETTVLWSKSTGCPLY-NAIV 109 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~-~~i~ 109 (523)
||+. +.++|.++|..+. +.+.
T Consensus 66 gia~----pG~vd~~~g~i~~~~~~~ 87 (302)
T PRK09698 66 VMGF----PALVSKDRRTVISTPNLP 87 (302)
T ss_pred EEeC----CcceeCCCCEEEecCCCC
Confidence 9998 4467874555443 3344
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00018 Score=70.79 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=83.7
Q ss_pred hchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhh
Q 009868 319 AIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCF 398 (523)
Q Consensus 319 ~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~ 398 (523)
..+|.-|+=..+.++. +.++|.+++..... + |+--+.+|-.+-. .-++.=+.....++|+++++.++++-
T Consensus 159 AGTGrFLE~~A~~Lgi--~leel~~~a~~~~~-~-----p~~Iss~CtVFAe--Sevi~l~~~G~~~edI~aGl~~sia~ 228 (293)
T TIGR03192 159 AGTGRGMEVISDLMQI--PIADLGPRSFDVET-E-----PEAVSSICVVFAK--SEALGLLKAGYTKNMVIAAYCQAMAE 228 (293)
T ss_pred ccccHHHHHHHHHcCC--CHHHHHHHHHhcCC-C-----CCCcCCcceEecc--HhHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3468888888888876 46777776522110 0 1111123221110 00111134467999999999999997
Q ss_pred HHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCcee-ecC-CCCccHHHHHHHHHH
Q 009868 399 QVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVI-RPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 399 ~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~-~~~-~~e~~alGaA~lA~~ 469 (523)
.+...+. + .+.. +.|+++||.++|+.+.+.+.+.|+++|. .+. ..-.+|+|||++|..
T Consensus 229 rv~~~~~---~-~~i~---------~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 229 RVVSLLE---R-IGVE---------EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHhc---c-cCCC---------CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 6544333 2 2333 5699999999999999999999999998 444 345889999999854
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.9e-05 Score=74.56 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=60.7
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+.||||+|.|++|++++|.+|+++.+.+.+++ .++++++.+.+.+.++++... . .. +.+|||+
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~-~~gIgi~ 63 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA---T----GQ-RGTVGVG 63 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh---c----CC-ceEEEec
Confidence 46899999999999999999999987766554 236777888887777776543 1 24 7789998
Q ss_pred cccceeEEeeCCCCcccccccccc
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
. +.++|+++|..+.+...|.
T Consensus 64 ~----pG~vd~~~g~i~~~~~~~~ 83 (301)
T PRK09557 64 I----PGSISPYTGLVKNANSTWL 83 (301)
T ss_pred C----cccCcCCCCeEEecCCccc
Confidence 8 3467865676655444563
|
|
| >PRK13310 N-acetyl-D-glucosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0001 Score=74.27 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=60.2
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.++++... . .. +.+|||+
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~-~~~igia 63 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR---F----GC-KGSVGIG 63 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh---c----CC-cceEEEe
Confidence 36899999999999999999999987766543 235788888888888776543 1 23 5578888
Q ss_pred cccceeEEeeCCCCcccccccc-cccc
Q 009868 88 NQRETTVLWSKSTGCPLYNAIV-WMDA 113 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~-w~D~ 113 (523)
. +.++|.++|....+.+. |.+.
T Consensus 64 ~----pG~vd~~~g~~~~~~~~~w~~~ 86 (303)
T PRK13310 64 I----PGMPETEDGTLYAANVPAASGK 86 (303)
T ss_pred C----CCcccCCCCEEeccCcccccCC
Confidence 8 34678656665444343 6543
|
|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=73.37 Aligned_cols=86 Identities=14% Similarity=0.260 Sum_probs=64.3
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
+|||+|.|+++++++|.+|+++.+.+.+++ .+++++.+.+.+.+++++++ .+....+ |.+|||+.
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~~~~~~-i~gIgva~- 65 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD----------TTPETIVDAIASAVDSFIQH---IAKVGHE-IVAIGIGA- 65 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHh---cCCCccc-eEEEEEec-
Confidence 589999999999999999999987655432 36788889999999888876 3445567 99999988
Q ss_pred cceeEEeeCCCCcccc-cccccccc
Q 009868 90 RETTVLWSKSTGCPLY-NAIVWMDA 113 (523)
Q Consensus 90 ~~~~v~~d~~~g~~l~-~~i~w~D~ 113 (523)
..++|.++|.... +.+.|.+.
T Consensus 66 ---pG~vd~~~g~~~~~~~~~w~~~ 87 (318)
T TIGR00744 66 ---PGPVNRQRGTVYFAVNLDWKQE 87 (318)
T ss_pred ---cccccCCCCEEEecCCCCCCCC
Confidence 3466864565433 33457654
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=73.06 Aligned_cols=126 Identities=23% Similarity=0.270 Sum_probs=88.3
Q ss_pred eccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEc------CCCCCCHHH
Q 009868 314 LEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIG------ITRFTSKAH 387 (523)
Q Consensus 314 ~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~g------l~~~~~~~~ 387 (523)
++.|...+|.-++-+.+.++. +.+++.+++.....+ +-| +.+| .+|.. +....+++|
T Consensus 257 N~~CAAGtGrFLE~~A~~Lgv--~v~E~~~~A~~~~~~------v~i-~S~C--------aVF~eSevi~~~~~G~~~Ed 319 (396)
T COG1924 257 NDKCAAGTGRFLEVIARRLGV--DVEELGKLALKATPP------VKI-NSRC--------AVFAESEVISALAEGASPED 319 (396)
T ss_pred ccccccccchHHHHHHHHhCC--CHHHHHHHHhcCCCC------ccc-CCee--------EEEehHHHHHHHHcCCCHHH
Confidence 344555679999999998876 678888887654110 111 1121 12211 344578999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccE-EEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHH
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFL-LRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAF 465 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~-i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~ 465 (523)
+..++.++++-++.. .+.+ ..+ ++. |++.||.+.|..+...+.+.+|++|.+++..+ .+|+|||+
T Consensus 320 I~AGl~~Sv~~~v~~---~~~~--~~~--------i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL 386 (396)
T COG1924 320 ILAGLAYSVAENVAE---KVIK--RVD--------IEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAAL 386 (396)
T ss_pred HHHHHHHHHHHHHHH---HHhh--ccC--------CCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHH
Confidence 999999888876544 2222 122 333 99999999999999999999999999988544 78999999
Q ss_pred HHHH
Q 009868 466 AAGL 469 (523)
Q Consensus 466 lA~~ 469 (523)
+|..
T Consensus 387 ~a~~ 390 (396)
T COG1924 387 IAKE 390 (396)
T ss_pred HHhh
Confidence 8753
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.024 Score=59.82 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhh---hccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeec
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKD---AVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRP 453 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~---~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~ 453 (523)
-.+++++-+|.+.-.+++.++.+.+. .+... ..+..|+++||+|+-+.+.++++++|+.||.+.
T Consensus 293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~-----~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~ 359 (420)
T PRK09472 293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKH-----HLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIG 359 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-----cCCCEEEEeCchhccccHHHHHHHHhCCCeEEe
Confidence 45677777778877777777554332 13221 116789999999999999999999999999874
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00036 Score=71.39 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=86.5
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhh
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESM 396 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egi 396 (523)
|...+|..|+-..+.++. +.++|.+++.+... +.+ -+ +.++-.+-. ...+.=+....+++|++.++..+|
T Consensus 272 CAAGTGrFLE~~A~~Lgi--~ieEl~~lA~~~~~-~pv----~I-sS~CtVFae--SevIsll~~G~~~eDIaAGl~~SI 341 (404)
T TIGR03286 272 CAGASGRFLEMTAKRLGV--DITELGKLALKGMP-EKV----RM-NSYCIVFGI--QDLVTALAEGASPEDVAAAACHSV 341 (404)
T ss_pred ccccCcHHHHHHHHHhCC--CHHHHHHHHHhCCC-CCC----Cc-cCccccccc--HhHHHHHHCCCCHHHHHHHHHHHH
Confidence 344578889888888865 67888887754310 000 01 112211100 011111233578999999999999
Q ss_pred hhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHHHH
Q 009868 397 CFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAFAA 467 (523)
Q Consensus 397 a~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~lA 467 (523)
+-++... .+++ .+.. +.|+++||.++|+.+...+.+.+|.++.+++.++ .+|+|||++|
T Consensus 342 a~rv~~~--l~~~-~~i~---------~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 342 AEQVYEQ--QLQE-IDVR---------EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred HHHHHHH--Hhhc-CCCC---------CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence 9887642 1222 2332 5699999999999999999999999999988665 7899999987
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00025 Score=65.38 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=63.8
Q ss_pred EEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcccc
Q 009868 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQR 90 (523)
Q Consensus 11 gIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~~ 90 (523)
|||+|+++++++++|.+|+++.+.+.+++ .+++++.+.+.+.++++..+. .. . +|||+.
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~-------~~-~-gIgi~~-- 59 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP----------TSPEELLDALAELIERLLADY-------GR-S-GIGISV-- 59 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHHH-------TC-E-EEEEEE--
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhhc-------cc-c-cEEEec--
Confidence 79999999999999999999998777664 578899999999999988773 12 3 888887
Q ss_pred ceeEEeeCCCCcccc-ccccccccCC
Q 009868 91 ETTVLWSKSTGCPLY-NAIVWMDART 115 (523)
Q Consensus 91 ~~~v~~d~~~g~~l~-~~i~w~D~R~ 115 (523)
+.++|.++|..+. |...|.+...
T Consensus 60 --pG~v~~~~g~i~~~~~~~~~~~~l 83 (179)
T PF00480_consen 60 --PGIVDSEKGRIISSPNPGWENIPL 83 (179)
T ss_dssp --SSEEETTTTEEEECSSGTGTTCEH
T ss_pred --cccCcCCCCeEEecCCCCcccCCH
Confidence 4578875555553 4466887543
|
This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A .... |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0051 Score=60.51 Aligned_cols=135 Identities=17% Similarity=0.084 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCC--CCCCCCCCceeEEc-C-----CCCCCHHHHHHHH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF--APWWRDDARGVCIG-I-----TRFTSKAHIARAV 392 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r--~P~~~~~arg~~~g-l-----~~~~~~~~l~rAv 392 (523)
||.++-=+...+....+++++.++|++-...+-=+.+-.+.|.. .+--..+..++-+| + .....++|+++++
T Consensus 131 GGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiAaSL 210 (279)
T TIGR00555 131 GGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIAASL 210 (279)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhccccccCCCHHHHHHHH
Confidence 44444345555544568999999987532111112233444421 11123455666667 3 3456799999999
Q ss_pred HhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecC-ccccHHHHHHHHhhcC---CceeecCC-CCccHHHHHH
Q 009868 393 LESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGG-ATVNNLLMQIQADLLG---SPVIRPAD-IETTALGAAF 465 (523)
Q Consensus 393 ~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG-~a~s~~~~qi~Advlg---~pv~~~~~-~e~~alGaA~ 465 (523)
+..|+.++-.+--..... .. +++|++.|| ...++..++.++..+. .....+++ .-.+|+|||+
T Consensus 211 l~mV~~nIg~lA~~~a~~--~~--------~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 211 LGLIGNNIGQIAYLCALR--YN--------IDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHH--cC--------CCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 999999876654332221 22 689999999 5578999999999886 44555664 4478899986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=64.14 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=79.7
Q ss_pred hchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhh
Q 009868 319 AIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCF 398 (523)
Q Consensus 319 ~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~ 398 (523)
..+|.-|+-..+.++. +.++|.+++.+...+ +.+ +.+|..+-. .-++.=+.....++|++.++.++++-
T Consensus 131 AGTG~FLe~~A~~L~i--~leel~~~a~~~~~~------~~i-ss~CtVFae--Sevi~~~~~G~~~edI~aGl~~sia~ 199 (262)
T TIGR02261 131 SGSGQFLENIARYLGI--AQDEIGSLSQQADNP------EKV-SGICAVLAE--TDVINMVSRGISAPNILKGIHESMAD 199 (262)
T ss_pred ccccHHHHHHHHHhCC--CHHHHHHHHhcCCCC------CCc-CCCceEEch--hhHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3468888888888876 567787776543111 011 122211110 00111133457999999999999998
Q ss_pred HHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC-Cc----eeecC-CCCccHHHHHHHH
Q 009868 399 QVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG-SP----VIRPA-DIETTALGAAFAA 467 (523)
Q Consensus 399 ~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg-~p----v~~~~-~~e~~alGaA~lA 467 (523)
.+...+..+ +.. -++|+++||.++|+.+.+.+.+.|+ .+ |.+++ ..-.+|+|||++|
T Consensus 200 r~~~~~~~~----~~~--------~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 200 RLAKLLKSL----GAL--------DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHhcc----CCC--------CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 765554433 222 2469999999999999999999984 23 33333 3347899999864
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PRK05082 N-acetylmannosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=66.30 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=49.6
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
++|||+|.|+++++++|.+|+++.+.+.+++ ...+++++.+.+.+.++++.. + +.+|||+.
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~--------~~~~~~~~~~~i~~~i~~~~~----------~-~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTP--------ASQTPEALRQALSALVSPLQA----------Q-ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCC--------CCCCHHHHHHHHHHHHHHhhh----------c-CcEEEEeC
Confidence 6899999999999999999999987766654 123567777777766665432 4 67788888
Q ss_pred ccceeEEeeC
Q 009868 89 QRETTVLWSK 98 (523)
Q Consensus 89 ~~~~~v~~d~ 98 (523)
. .++|.
T Consensus 64 p----G~vd~ 69 (291)
T PRK05082 64 T----GIIND 69 (291)
T ss_pred c----ccccC
Confidence 3 35564
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=67.04 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=50.1
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
.+.+++|||+|+|++|++++| +++++.....++. ++ .+.+.+++++++++ .|+..++ |..|
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~d-d~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~d-i~~i 202 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVME-DNEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLED-VEAI 202 (404)
T ss_pred cCCEEEEEEcChhheeeEEEc-CCeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccc-eeEE
Confidence 355899999999999999998 5688776544321 22 33456666677665 5666678 9999
Q ss_pred EEccccceeE
Q 009868 85 GLTNQRETTV 94 (523)
Q Consensus 85 gis~~~~~~v 94 (523)
++++.+...+
T Consensus 203 ~~TGyGR~~i 212 (404)
T TIGR03286 203 GTTGYGRFTI 212 (404)
T ss_pred EeeeecHHHH
Confidence 9988655443
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0016 Score=64.12 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=45.3
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
++++|||+|+|++|++|+|. ++++.....++. .+|.+ .+.+++++++++ .|...++ |..+++
T Consensus 32 m~~~GIDiGStt~K~Vlld~-~~i~~~~~~~tg----------~~~~~---~a~~~l~~~l~~---~g~~~~~-v~~~~~ 93 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD-GELYGYNSMRTG----------NNSPD---SAKNALQGIMDK---IGMKLED-INYVVG 93 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC-CEEEEEEeecCC----------CCHHH---HHHHHHHHHHHH---cCCcccc-eEEEEE
Confidence 48899999999999999994 566654443332 23333 455666677666 4555567 888888
Q ss_pred cccc
Q 009868 87 TNQR 90 (523)
Q Consensus 87 s~~~ 90 (523)
++.+
T Consensus 94 TGyG 97 (293)
T TIGR03192 94 TGYG 97 (293)
T ss_pred ECcc
Confidence 7754
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >smart00732 YqgFc Likely ribonuclease with RNase H fold | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0016 Score=53.61 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=26.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeee
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEF 38 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~ 38 (523)
.+||||+|+|.+|++++|.+|+++...+.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~ 32 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLADPLEVIP 32 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEecCEEEEE
Confidence 3789999999999999999999987665543
|
YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions. |
| >PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00064 Score=62.53 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=60.7
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEccc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTNQ 89 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~~ 89 (523)
+|||+|+|++-++++|.+..++...+.++. |++....+.+++++++.+ .+.++.+ |..|.++++
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~-i~~v~~gTT 65 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSD-IDRVRHGTT 65 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhh-CcEEEeccH
Confidence 799999999999999998778887777654 345666788888888776 4566778 999999998
Q ss_pred cceeEEeeCCCCccc
Q 009868 90 RETTVLWSKSTGCPL 104 (523)
Q Consensus 90 ~~~~v~~d~~~g~~l 104 (523)
..+-.++.. +|.++
T Consensus 66 ~~tNAl~e~-~g~~v 79 (176)
T PF05378_consen 66 VATNALLER-KGARV 79 (176)
T ss_pred HHHHHHHhc-cCCCc
Confidence 777666665 56443
|
|
| >COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=63.37 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCH-HHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEP-MEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
++.|+||||-|+|+++++|.|.+|+++......-. ....++ +.-++.+.+++++++.+ .|.++++ |.+
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpA-------N~~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~-i~~ 71 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPA-------NIQLVGKEEAVRNIKDAIREALDE---AGLKPDE-IAA 71 (301)
T ss_pred CccEEEEEccCCcceEEEEEcCCCcEEEEeccCCc-------eecccchHHHHHHHHHHHHHHHHh---cCCCHHH-hCc
Confidence 46799999999999999999999999987543211 123345 78888999999999877 6777777 554
Q ss_pred E
Q 009868 84 I 84 (523)
Q Consensus 84 I 84 (523)
+
T Consensus 72 ~ 72 (301)
T COG2971 72 I 72 (301)
T ss_pred e
Confidence 4
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0013 Score=72.96 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=46.7
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccccCC
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGVFKE 476 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~~~~ 476 (523)
++.|+++||.+|.|.+.++++++||.++.. .+..|+.|+|||+.|+...|.+++
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~ 383 (621)
T CHL00094 329 IDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKD 383 (621)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccc
Confidence 889999999999999999999999987655 346679999999999988775443
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0026 Score=61.81 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=45.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCEE-EEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPI-GSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~-~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+++|||+|+|++|++|+|.+++.+ ......++. . ..+| .+...+++++++++ .++...+ |..|+.
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~----~---~~~~---~~~~~~~l~~~~~~---~g~~~~~-i~~i~~ 67 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRI----R---QRDP---FKLAEDAYDDLLEE---AGLAAAD-VAYCAT 67 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecC----C---CCCH---HHHHHHHHHHHHHH---cCCChhh-eEEEEE
Confidence 689999999999999999655422 222222221 0 1234 23455666677666 5665568 999999
Q ss_pred ccccce
Q 009868 87 TNQRET 92 (523)
Q Consensus 87 s~~~~~ 92 (523)
++.+..
T Consensus 68 TGYGR~ 73 (262)
T TIGR02261 68 TGEGES 73 (262)
T ss_pred ECCchh
Confidence 886553
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PRK00292 glk glucokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0028 Score=64.17 Aligned_cols=79 Identities=13% Similarity=0.044 Sum_probs=48.4
Q ss_pred ceEEEEecCCCCceEEEEcC-CCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
+++||||||+|++|++++|. +++++...+.+++ + ++.+.+.+.+++++. .+ .+ +.+||
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~-----------~----~~~~~~~l~~~l~~~--~~---~~-~~gig 60 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA-----------D----YPSLEDAIRAYLADE--HG---VQ-VRSAC 60 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecC-----------C----CCCHHHHHHHHHHhc--cC---CC-CceEE
Confidence 47899999999999999995 5666665555433 1 112444444554420 11 25 88888
Q ss_pred EccccceeEEeeCCCCccccccccccc
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMD 112 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D 112 (523)
|+. +.++|. + +...+.+.|.+
T Consensus 61 Ig~----pG~vd~-~-~i~~~n~~w~~ 81 (316)
T PRK00292 61 FAI----AGPVDG-D-EVRMTNHHWAF 81 (316)
T ss_pred EEE----eCcccC-C-EEEecCCCccc
Confidence 888 457776 3 33333345754
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0044 Score=69.03 Aligned_cols=53 Identities=26% Similarity=0.265 Sum_probs=45.8
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccccC
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGVFK 475 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~~~ 475 (523)
++.|+++||++|.|.+.+++.++||.++.. .+..|+.|+|||+.|+.-.+..+
T Consensus 329 Id~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~ 382 (668)
T PRK13410 329 IDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELK 382 (668)
T ss_pred CcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccccc
Confidence 889999999999999999999999986544 45778999999999998776443
|
|
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0038 Score=61.19 Aligned_cols=70 Identities=10% Similarity=-0.010 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-+-..++-|.+..+...++.+++..+.+ -.|+++||-+ ++++..+..+..+ .++-...
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~---------~~vi~TGG~a------~~l~~~~~~~~~~--~~~Lvl~ 245 (256)
T PRK13321 183 KSTVSSIQSGLYYGYAGLVEGIVARIKAELGGP---------PRVIATGGFA------SLIAKESRCFDHV--DPDLLLE 245 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCcH------HHHhhcCCCccEE--CCCcHHH
Confidence 467888888999999999999999988765543 4699999965 3344444544443 3556677
Q ss_pred HHHHHHH
Q 009868 462 GAAFAAG 468 (523)
Q Consensus 462 GaA~lA~ 468 (523)
|-..++.
T Consensus 246 GL~~~~~ 252 (256)
T PRK13321 246 GLRILYQ 252 (256)
T ss_pred HHHHHHH
Confidence 7777654
|
|
| >PLN02920 pantothenate kinase 1 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.084 Score=53.97 Aligned_cols=140 Identities=16% Similarity=0.038 Sum_probs=87.0
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCC---CCCCCCCCceeEEc--CCC-----CCCHH
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF---APWWRDDARGVCIG--ITR-----FTSKA 386 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r---~P~~~~~arg~~~g--l~~-----~~~~~ 386 (523)
++.-||..+-=+..++....+|+++-++|.+=.-.+-=+.+-.+.|.. .|--..++.++-|| ... +.+++
T Consensus 192 GTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~e 271 (398)
T PLN02920 192 GTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPE 271 (398)
T ss_pred ccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccccCCCCCCCCCCCccceeeccCcccccccccccCCHH
Confidence 344456665555555555678999999887421111112344455421 12234556666666 321 35699
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccH-HHHHHHHhhc------CCceeecC-CCCc
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNN-LLMQIQADLL------GSPVIRPA-DIET 458 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~-~~~qi~Advl------g~pv~~~~-~~e~ 458 (523)
|++|+++--|++++-++--...+.. . +++|+++|...+++ ..++.++-.. ++....++ ..-.
T Consensus 272 Dia~SLL~mVs~nIgqiA~L~A~~~--~--------ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYl 341 (398)
T PLN02920 272 DVARSLLRMISNNIGQISYLNALRF--G--------LKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFL 341 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--C--------CCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchh
Confidence 9999999999999887654443332 3 78999999999887 6666565554 23333444 4558
Q ss_pred cHHHHHHH
Q 009868 459 TALGAAFA 466 (523)
Q Consensus 459 ~alGaA~l 466 (523)
+|+||++.
T Consensus 342 GAlGAfl~ 349 (398)
T PLN02920 342 GALGAFMS 349 (398)
T ss_pred HHHHHHHh
Confidence 89999764
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0025 Score=63.07 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=49.9
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
||||.|+|++|++|+|.+|+++.+....-. .....+.++..+.+.+++++++++. +..+.+ |..+.++.
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~------n~~~~~~~~~~~~i~~~i~~~~~~~---~~~~~~-i~~~~~g~ 69 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGA------NYNSVGFEEAMENIKEAIEEALSQA---GLSPDD-IAAICIGA 69 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-T------THHHHHHHHHHHHHHHHHHHHHHHH---TTSTTC-CCEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCC------CCCCCCcchhhhHHHHHHHHHHHHc---CCCccc-cceeeeeE
Confidence 699999999999999999998876543221 1112456778888889999998874 555566 76665444
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PRK12408 glucokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0024 Score=65.18 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=45.7
Q ss_pred ceEEEEecCCCCceEEEEcCCCCE------EEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARP------IGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSG 80 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i------~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (523)
.++|++|||+|++|.+++|.+|++ +...+.+++ +. +.+.+.+++++++ ..+
T Consensus 16 ~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~~t~-----------~~----~~~~~~i~~~~~~-------~~~- 72 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCASPDAAKPVELLDYRTYRCA-----------DY----PSLAAILADFLAE-------CAP- 72 (336)
T ss_pred ccEEEEEcChhhhheeEEeccCCccccccccceeEecCC-----------Cc----cCHHHHHHHHHhc-------CCC-
Confidence 347999999999999999988873 333222221 11 1233444455432 125
Q ss_pred ceEEEEccccceeEEeeCCCCcccccccccc
Q 009868 81 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 81 I~aIgis~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
+.+|||+.-+. .++ +|....+.+.|.
T Consensus 73 ~~~igIg~pG~---~~~--~g~v~~~nl~w~ 98 (336)
T PRK12408 73 VRRGVIASAGY---ALD--DGRVITANLPWT 98 (336)
T ss_pred cCEEEEEecCC---ceE--CCEEEecCCCCc
Confidence 77888888432 244 576665555684
|
|
| >PRK13318 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0053 Score=60.25 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-+...++-|.+..+...++++++..+.+ -+|+++||.++ +++..+..+..+ .++-...
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~---------~~vi~TGG~a~------~l~~~~~~~~~~--~~~Lvl~ 245 (258)
T PRK13318 183 KNTVEAMQSGIYYGYVGLVEGIVKRIKEELGKD---------PKVIATGGLAP------LFAEESDTIDIV--DPDLTLK 245 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCchH------HHHhccCCCcEE--CcccHHH
Confidence 467888999999999999999999988765433 46999999863 344455555544 3455666
Q ss_pred HHHHHHH
Q 009868 462 GAAFAAG 468 (523)
Q Consensus 462 GaA~lA~ 468 (523)
|-..++.
T Consensus 246 Gl~~~~~ 252 (258)
T PRK13318 246 GLRLIYE 252 (258)
T ss_pred HHHHHHH
Confidence 7665544
|
|
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.4 Score=49.32 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=47.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC--CceeecC-CC--CccHHH
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG--SPVIRPA-DI--ETTALG 462 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg--~pv~~~~-~~--e~~alG 462 (523)
.++.++|-.++.+...+-.+....+.+ ++.|+++||.+.++.+.+.+.+.+. .||.+.. .. ++.++|
T Consensus 269 ~A~~ald~~~~~lak~I~~l~~~L~gd--------pD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~G 340 (358)
T PRK03011 269 KAKLVYEAMAYQIAKEIGAMAAVLKGK--------VDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEG 340 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHH
Confidence 456678888888887777765443224 7899999999998888777666654 3666643 22 355666
Q ss_pred HHH
Q 009868 463 AAF 465 (523)
Q Consensus 463 aA~ 465 (523)
|+.
T Consensus 341 A~r 343 (358)
T PRK03011 341 ALR 343 (358)
T ss_pred HHH
Confidence 543
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0077 Score=60.51 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=48.2
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
...++||||.|+|.+|++|.++++.++......++ -.|. ..++++++++++ +....+ |.++
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~----------g~p~-----~~~~l~~~le~l---~~~~~~-I~~~ 193 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK----------GRPI-----AEKALKEALEEL---GEKLEE-ILGL 193 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC----------CChh-----HHHHHHHHHHHc---ccChhe-eeee
Confidence 45689999999999999999987766654443332 1222 245566666663 444467 9999
Q ss_pred EEccccceeE
Q 009868 85 GLTNQRETTV 94 (523)
Q Consensus 85 gis~~~~~~v 94 (523)
++++.+...+
T Consensus 194 ~~TGYGR~~v 203 (396)
T COG1924 194 GVTGYGRNLV 203 (396)
T ss_pred eeecccHHHh
Confidence 9999765433
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0039 Score=60.46 Aligned_cols=65 Identities=26% Similarity=0.318 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHH
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAF 465 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~ 465 (523)
++++..++.+.-.++..++ + .+ ++.|+++||+|+.+.+.+.+.+.||.||.++. +.+++|+|||+
T Consensus 173 ~~i~~~~~~i~~~i~~~l~---~---~~--------~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIE---G---QG--------VKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---CC--------CCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 4555555555555554443 1 23 78999999999999999999999999998866 45688999986
|
|
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0059 Score=63.41 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=49.3
Q ss_pred eEEEEecCCCCceEEEEcC-CCCEEEEEEeeeeeccCCCC------eEE-eC-HHHHHHHHHHHHHHHHHHHh-hCCCCc
Q 009868 8 FIGAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQFYPEAG------WVE-HE-PMEILESVRVCMAKALDKAT-ADGHNV 77 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g------~~e-~d-~~~~~~~~~~~l~~~~~~~~-~~~~~~ 77 (523)
|-++||||||.+.+.++|. +|++++..+..+|+...... ++. .+ .+++-+.+.+.+.++++++. +.++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 6789999999999999996 89999999998886532211 111 11 34455555555555555432 257888
Q ss_pred ccCceEEEEcc
Q 009868 78 DSGLKAIGLTN 88 (523)
Q Consensus 78 ~~~I~aIgis~ 88 (523)
++ |..|.|++
T Consensus 82 ~~-I~~i~i~G 91 (412)
T PF14574_consen 82 ED-IYEIVIVG 91 (412)
T ss_dssp GG-EEEEEEEE
T ss_pred HH-eEEEEEEe
Confidence 88 88887766
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0087 Score=66.46 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=44.9
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC-ceeecCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS-PVIRPADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|-|.+.+++.+.|++ |+...+..|+.|+|||+.|+.-.+.
T Consensus 354 Id~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~ 405 (657)
T PTZ00186 354 INDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD 405 (657)
T ss_pred CCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc
Confidence 89999999999999999999999997 4555667899999999999976654
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0077 Score=59.42 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCC-CccHHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADI-ETTALGAA 464 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~-e~~alGaA 464 (523)
.++++..+|-+.-.++..++ + .. ++.|+++||+|+-+-+.+++++.||.||.++..+ .++|+|+|
T Consensus 199 ~~ii~~~~~~i~~~i~~~l~---~---~~--------~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa 264 (267)
T PRK15080 199 FPVVKPVVEKMASIVARHIE---G---QD--------VEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIA 264 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHh---c---CC--------CCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHH
Confidence 45556666555555544433 1 24 7899999999999999999999999999997755 58999999
Q ss_pred HH
Q 009868 465 FA 466 (523)
Q Consensus 465 ~l 466 (523)
+.
T Consensus 265 ~~ 266 (267)
T PRK15080 265 LS 266 (267)
T ss_pred hh
Confidence 74
|
|
| >PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0063 Score=67.73 Aligned_cols=78 Identities=10% Similarity=-0.021 Sum_probs=52.0
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
..+||||||+|++|++++|.+|+++...+.+++. ++.+.+.+++++++ .+. .+ +.+|||
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~---------------~~~~~~~i~~~l~~---~~~--~~-~~~igi 76 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPGEITQIRVYPGAD---------------YPTLTDAIRKYLKD---VKI--GR-VNHAAI 76 (638)
T ss_pred CCEEEEEcCchhheeeeecCCCcccceeEEecCC---------------CCCHHHHHHHHHHh---cCC--CC-cceEEE
Confidence 3589999999999999999999987776655531 12345555666554 221 35 888888
Q ss_pred ccccceeEEeeCCCCcccccccccc
Q 009868 87 TNQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
+. +.++|. +. ...+.+.|.
T Consensus 77 g~----pGpVd~-~~-~~~~nl~w~ 95 (638)
T PRK14101 77 AI----ANPVDG-DQ-VRMTNHDWS 95 (638)
T ss_pred EE----ecCccC-Ce-eeecCCCcE
Confidence 88 567775 32 223344686
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=64.40 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=44.8
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++.+.||.++.. .+..++.|+|||+.|+.-.|.
T Consensus 327 id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~ 378 (627)
T PRK00290 327 IDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD 378 (627)
T ss_pred CcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC
Confidence 899999999999999999999999987654 457789999999999876653
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.017 Score=63.81 Aligned_cols=51 Identities=24% Similarity=0.252 Sum_probs=44.5
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 325 i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~ 376 (595)
T TIGR02350 325 IDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD 376 (595)
T ss_pred CcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999977665 456789999999999876554
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.014 Score=64.46 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=43.6
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|.++||++|.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+.
T Consensus 329 i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 380 (602)
T PF00012_consen 329 IDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGS 380 (602)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTS
T ss_pred cceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccc
Confidence 889999999999999999999999987765 446788999999999876653
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.2 Score=54.95 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHhhhhhHHH----HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceee-cCCCC
Q 009868 383 TSKAHIARAVLESMCFQVK----DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIE 457 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r----~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e 457 (523)
|-..+|.|+-+|.+...+- ...+...+..+.++ -+++.|.++||.+|-|...+.+++.++++... ++..|
T Consensus 271 ~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~-----~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpde 345 (579)
T COG0443 271 DLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEK-----SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDE 345 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-----hhCceEEEccceeccHHHHHHHHHHhCccccccCCccH
Confidence 3455666666666554432 11222212234431 23899999999999999999999999966655 56788
Q ss_pred ccHHHHHHHHHHhccccC
Q 009868 458 TTALGAAFAAGLAIGVFK 475 (523)
Q Consensus 458 ~~alGaA~lA~~~~G~~~ 475 (523)
+.|+|||+.|+.-.|..+
T Consensus 346 ava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 346 AVALGAAIQAAVLSGEVP 363 (579)
T ss_pred HHHHHHHHHHHhhcCccc
Confidence 999999999999877644
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.013 Score=59.94 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCcc-EEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHH
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEF-LLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAA 464 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA 464 (523)
+++...++.+.-.++..++......... .++ .|+++||+|+-+.+.+++++.|+.||.+.. ..++.|+|||
T Consensus 246 eii~~~~~~i~~~i~~~l~~~~~~~~~~-------~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa 318 (336)
T PRK13928 246 EALKEPVSAIVQAVKSVLERTPPELSAD-------IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTG 318 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccHh-------hcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHH
Confidence 4444555555555555554332100011 144 699999999999999999999999998876 6678899999
Q ss_pred HHHHH
Q 009868 465 FAAGL 469 (523)
Q Consensus 465 ~lA~~ 469 (523)
+.+..
T Consensus 319 ~~~~~ 323 (336)
T PRK13928 319 KMLEN 323 (336)
T ss_pred HHHhc
Confidence 98765
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.02 Score=63.01 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=44.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G 472 (523)
++.|+++||.+|.|.+.+++.+.|++++.. .+..++.|+|||+.|+.-.+
T Consensus 309 Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 309 IDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred CcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999987765 45678999999999987543
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.026 Score=62.51 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=44.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++++.||.++.. .+..++.|+|||+.|+.-.+.
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~ 380 (616)
T PRK05183 329 VKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGN 380 (616)
T ss_pred CCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccc
Confidence 889999999999999999999999976543 457789999999999876553
|
|
| >COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.13 Score=51.48 Aligned_cols=133 Identities=21% Similarity=0.197 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHcCCCC-CHHHHHHHHHhcCCCCceEEEcC-CCCCCCCCCCCCCceeEEcCCC----------------
Q 009868 320 IAGAAVQWLRDSLGIIS-SASEIEELALQVNSTGGVYFVPA-FNGLFAPWWRDDARGVCIGITR---------------- 381 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~~-~~~~l~~~a~~~~~~~gl~~~P~-l~G~r~P~~~~~arg~~~gl~~---------------- 381 (523)
..|.+++-+.+.+++.. --..++++|++- ...-+.+|+ .. +.+...=+|.||..
T Consensus 159 A~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G--~~~~~~fP~~~~------~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~ 230 (342)
T COG0533 159 AAGEAFDKVARLLGLGYPGGPAIEKLAKKG--DPDAFEFPRPMV------KGKNLDFSFSGLKTAVLRLLKKLKQKEELN 230 (342)
T ss_pred hhhHHHHHHHHHhCCCCCCcHHHHHHHhcC--CCCceeCCcccc------CCCCcceehHhHHHHHHHHHHhcccccccc
Confidence 46899999999888632 224788888753 222266665 21 11222346666533
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCCCCc
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPADIET 458 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~~e~ 458 (523)
..+++++..+..|.+.-.+.+..++.-+..+ .+++.++||.+.|..+++++..+. |..++.++. +-
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~----------~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~-~l 299 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG----------KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL-EL 299 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh-Hh
Confidence 1247779999888887777776665444333 678999999999999999999977 344666542 22
Q ss_pred cHHHHHHHHHHhc
Q 009868 459 TALGAAFAAGLAI 471 (523)
Q Consensus 459 ~alGaA~lA~~~~ 471 (523)
+.==+||+|..|.
T Consensus 300 CtDNaaMIA~ag~ 312 (342)
T COG0533 300 CTDNAAMIAYAGL 312 (342)
T ss_pred ccchHHHHHHHHH
Confidence 2223456665554
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.034 Score=61.43 Aligned_cols=50 Identities=30% Similarity=0.305 Sum_probs=43.7
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G 472 (523)
++.|+++||+++.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+
T Consensus 313 id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~ 363 (599)
T TIGR01991 313 IKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAG 363 (599)
T ss_pred CCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999976554 45778999999999987654
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.054 Score=57.50 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC-CceeecCCCCc
Q 009868 380 TRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG-SPVIRPADIET 458 (523)
Q Consensus 380 ~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg-~pv~~~~~~e~ 458 (523)
...-++.++-.. ++.+.-.+..+++..-+..+.. ++.|+++||.++.|.+.+++...|+ .|+...+..++
T Consensus 366 ~~~ItR~efe~i-i~~~l~ri~~~i~~~L~~a~~~--------~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~s 436 (450)
T PRK11678 366 ATEISQQGLEEA-ISQPLARILELVQLALDQAQVK--------PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGS 436 (450)
T ss_pred ceeeCHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC--------CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcch
Confidence 344566665433 3445555555555433335666 7899999999999999999999996 68888888889
Q ss_pred cHHHHHHHHHH
Q 009868 459 TALGAAFAAGL 469 (523)
Q Consensus 459 ~alGaA~lA~~ 469 (523)
.|.|+|+.|..
T Consensus 437 Va~Gla~~a~~ 447 (450)
T PRK11678 437 VTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.038 Score=61.80 Aligned_cols=51 Identities=27% Similarity=0.214 Sum_probs=45.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~ 417 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE 417 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC
Confidence 899999999999999999999999987654 567889999999999976654
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.029 Score=62.69 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=44.6
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.++.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+.
T Consensus 368 i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~ 419 (663)
T PTZ00400 368 LNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE 419 (663)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC
Confidence 899999999999999999999999987654 457789999999999876553
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.054 Score=60.41 Aligned_cols=51 Identities=27% Similarity=0.227 Sum_probs=43.6
Q ss_pred ccEEEEecCccccHHHHHHHHhhcC-Cceee-cCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLG-SPVIR-PADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg-~pv~~-~~~~e~~alGaA~lA~~~~G~ 473 (523)
++.|+++||.+|.|.+.+++.+.|+ .++.. .+..++.|+|||+.|+.-.+.
T Consensus 328 id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~ 380 (653)
T PRK13411 328 IDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE 380 (653)
T ss_pred CcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC
Confidence 7899999999999999999999997 55544 467789999999999876553
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.033 Score=56.85 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=40.3
Q ss_pred EEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHH
Q 009868 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 425 ~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
.|+++||+++.+.+.+.+.+.++.||.+.. ..++.|+|||+.+..
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 499999999999999999999999999876 566789999998765
|
|
| >PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.13 Score=52.23 Aligned_cols=140 Identities=19% Similarity=0.076 Sum_probs=78.4
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCC--CCCCCCCCceeEEcC-C------CCCCHHH
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLF--APWWRDDARGVCIGI-T------RFTSKAH 387 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r--~P~~~~~arg~~~gl-~------~~~~~~~ 387 (523)
++..||..+-=+..++....+|+++.++|++=.-.+-=+.+-.+.|.. .+.-.++..++-+|- . ...+++|
T Consensus 183 Gs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~D 262 (341)
T PF03630_consen 183 GSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKED 262 (341)
T ss_dssp EES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHH
T ss_pred ccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHH
Confidence 344455555545555433468999999886421111112233333332 111234455554442 1 1347899
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHH---hhc---CCceeecC-CCCcc
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQA---DLL---GSPVIRPA-DIETT 459 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~A---dvl---g~pv~~~~-~~e~~ 459 (523)
++|+++.-|++++-++.-...+..+ +++|+++|...+ ++..++.++ +-. +.....+. ..-.+
T Consensus 263 ia~sll~mv~~nIg~la~l~A~~~~----------~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~g 332 (341)
T PF03630_consen 263 IAKSLLNMVSNNIGQLAYLHAKIHG----------VKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLG 332 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------------EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhH
Confidence 9999999999999887655544333 789999999986 567788888 433 23334444 55588
Q ss_pred HHHHHHH
Q 009868 460 ALGAAFA 466 (523)
Q Consensus 460 alGaA~l 466 (523)
|+||.+.
T Consensus 333 alGa~l~ 339 (341)
T PF03630_consen 333 ALGAFLK 339 (341)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999764
|
CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D. |
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=51.53 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCC-ceeecCC-----CC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGS-PVIRPAD-----IE 457 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~~-----~e 457 (523)
+++|+++-+.|=.|.++.+.++.+. .+ +++|+++|||++|+.+++.+...+.. +|...+. .-
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~----~~--------~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~ 325 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFP----PQ--------PDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDA 325 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-----TT---------EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcC----CC--------CceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHH
Confidence 5899999999988888877776653 23 68999999999999999999999875 8876531 11
Q ss_pred ccHHHHHHHHHHhc-cccCChhH
Q 009868 458 TTALGAAFAAGLAI-GVFKEEEI 479 (523)
Q Consensus 458 ~~alGaA~lA~~~~-G~~~~~~~ 479 (523)
--|+.=|++|...+ |...++..
T Consensus 326 ~EA~aFA~La~~~~~g~~~~lp~ 348 (364)
T PF03702_consen 326 KEAMAFAWLAYRRLNGLPNNLPS 348 (364)
T ss_dssp HHHHHHHHHHHHHHCT---S-HH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCc
Confidence 23666777777665 33334433
|
It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B. |
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.051 Score=60.67 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=43.5
Q ss_pred ccEEEEecCccccHHHHHHHHhhcC-Cce-eecCCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLG-SPV-IRPADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg-~pv-~~~~~~e~~alGaA~lA~~~~G 472 (523)
++.|.++||.+|.|.+.+++.+.|+ .++ ...+..|+.|+|||+.|+.-.+
T Consensus 333 i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 333 VHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred CcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 8999999999999999999999996 455 4456788999999999987654
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.046 Score=55.77 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=40.1
Q ss_pred EEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHH
Q 009868 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 425 ~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
.|+++||+|+-|.+.+.+++.++.||.+.. +.++.|+|||+++..
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 699999999999999999999999999876 566889999998654
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.04 Score=56.18 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=40.2
Q ss_pred cE-EEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHH
Q 009868 424 FL-LRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 424 ~~-i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
+. |+++||+++-+.+.+.+++.++.|+.+.. ..++.++|||+++..
T Consensus 281 ~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 281 DRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred hCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 44 99999999999999999999999998875 456788999998754
|
|
| >PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P) | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.1 Score=49.28 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=50.6
Q ss_pred eEEEEecCCCCceEEEEcCCCC-EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCC-CcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR-PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGH-NVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~-i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~I~aIg 85 (523)
.+|+||+|+|++|++++...|. .....+..++ .|.. ......+++++.+.+++.+.++. .+. +..+ ..-+|
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~--ip~~-~~~~~~~~lFd~ia~~i~~f~~~---~~~~~~~~-~l~lG 136 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYK--IPEE-LMNGSGEELFDFIADCIAEFLKE---HNLESRDE-KLPLG 136 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----HH-HHTSBHHHHHHHHHHHHHHHHHH---TTTTSTTS-EEEEE
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCceeeecccc--CChH-HhcCCcccHHHHHHHHHHHHHHH---hccccccc-ccceE
Confidence 5789999999999999997554 3333333333 2210 11223488999999999999887 332 2334 55566
Q ss_pred EccccceeEEeeC
Q 009868 86 LTNQRETTVLWSK 98 (523)
Q Consensus 86 is~~~~~~v~~d~ 98 (523)
++- -.+++.
T Consensus 137 fTF----SFP~~q 145 (206)
T PF00349_consen 137 FTF----SFPVEQ 145 (206)
T ss_dssp EEE----ESSEEE
T ss_pred EEE----EEEEEe
Confidence 665 346654
|
The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A .... |
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.12 Score=52.95 Aligned_cols=77 Identities=23% Similarity=0.214 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC--CCcc-
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD--IETT- 459 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~--~e~~- 459 (523)
.+++|+++-+.|=.|.++.+.+..+. .. .++|+++|||++|+.+++.+...+..+|...+. -..-
T Consensus 259 ~s~~D~~aTlt~~TA~sI~~~~~~~~----~~--------~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da 326 (365)
T PRK09585 259 LSPEDVQATLTELTAASIARAVRRLP----PG--------PDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDA 326 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc----CC--------CCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhH
Confidence 47899999998877777776664432 23 578999999999999999999999756665443 1222
Q ss_pred --HHHHHHHHHHhc
Q 009868 460 --ALGAAFAAGLAI 471 (523)
Q Consensus 460 --alGaA~lA~~~~ 471 (523)
|+.-|++|...+
T Consensus 327 ~EA~aFA~La~~~l 340 (365)
T PRK09585 327 KEALAFAWLAVRTL 340 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 455556655443
|
|
| >PLN02902 pantothenate kinase | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.3 Score=49.96 Aligned_cols=141 Identities=13% Similarity=0.012 Sum_probs=86.8
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCC-C--CCCCCCCCceeEEc--CC-----CCCCHH
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL-F--APWWRDDARGVCIG--IT-----RFTSKA 386 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~-r--~P~~~~~arg~~~g--l~-----~~~~~~ 386 (523)
++.-||..+-=+..++-...+|+++-++|.+=..++-=+.+-.+.|. . .+--..++-++-|| .. .+.+++
T Consensus 241 GTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~e 320 (876)
T PLN02902 241 GTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPE 320 (876)
T ss_pred ccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccCeeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHH
Confidence 34445666555555554457899999988652111111334455542 1 11123455555566 21 135799
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhcC------CceeecC-CCCc
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLLG------SPVIRPA-DIET 458 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advlg------~pv~~~~-~~e~ 458 (523)
|++|+++--|++++-++--...+.. . +++|+++|...+ ++.-++.++-.+. +....+. ..-.
T Consensus 321 DiarSLL~mIs~NIGqiA~L~A~~~--~--------ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGyl 390 (876)
T PLN02902 321 DISLSLLRMISYNIGQISYLNALRF--G--------LKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFL 390 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--C--------CCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchh
Confidence 9999999999999988755444433 3 789999999986 5666787776652 3444444 4457
Q ss_pred cHHHHHHHH
Q 009868 459 TALGAAFAA 467 (523)
Q Consensus 459 ~alGaA~lA 467 (523)
+|+||.+..
T Consensus 391 GAlGafl~~ 399 (876)
T PLN02902 391 GALGAFMSY 399 (876)
T ss_pred HHHHHHhcC
Confidence 889997643
|
|
| >TIGR02707 butyr_kinase butyrate kinase | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.093 Score=53.78 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC--CceeecCC
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG--SPVIRPAD 455 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg--~pv~~~~~ 455 (523)
.++.++|-.++.+...+-.+....+-. ++.|+++||.+.|+.+++.+.+-+. .||.+.+.
T Consensus 267 ~A~~a~d~~~~~la~~Ia~l~~~l~g~--------pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGKMAVVLKGK--------VDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 455677777777777666665433224 6899999999988877766666654 78888653
|
This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism. |
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.29 Score=45.37 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=44.5
Q ss_pred EEEEecCCCCceEEEEcC--CC--CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 9 IGAIDQGTTSTRFIIYDH--QA--RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~--~g--~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
++||||||+++|+++... +| ++++....|. .-=..| .-.|.+..-+++.++++++-++ .+...++ ..+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s--~gi~~G-~I~d~~~~~~~I~~ai~~ae~~---~~~~i~~--V~v 72 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPS--RGIRKG-VIVDIEAAARAIREAVEEAERM---AGVKIDS--VYV 72 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecC--CCccCc-EEECHHHHHHHHHHHHHHHHHH---hCCcccE--EEE
Confidence 368999999999999863 45 4444443321 111234 4568888888888888777655 3444333 235
Q ss_pred EEcc
Q 009868 85 GLTN 88 (523)
Q Consensus 85 gis~ 88 (523)
++++
T Consensus 73 ~i~g 76 (187)
T smart00842 73 GISG 76 (187)
T ss_pred EEcC
Confidence 5555
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.097 Score=56.52 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceee-cCCCCccHHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIR-PADIETTALGAA 464 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~-~~~~e~~alGaA 464 (523)
+++..-+++=+-.-+...+... .+.... +..|=++||.+|.|..-+++++.||++..+ ++..|+.|+|||
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~-~l~~ed--------i~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~A 376 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADA-KLKVED--------IHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAA 376 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh-cCcccc--------ceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHH
Confidence 4455556665555555544432 122223 778899999999999999999999999976 557889999999
Q ss_pred HHHHHhc
Q 009868 465 FAAGLAI 471 (523)
Q Consensus 465 ~lA~~~~ 471 (523)
+..|.-.
T Consensus 377 LqcAIlS 383 (727)
T KOG0103|consen 377 LQCAILS 383 (727)
T ss_pred HHHHhcC
Confidence 9988643
|
|
| >TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.074 Score=59.52 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC---CceeecC----
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG---SPVIRPA---- 454 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg---~pv~~~~---- 454 (523)
..+++++.+++.+.++-.+...++.+.+..+ ++.|+++||.++|..+++.+.+.++ ..|..+.
T Consensus 628 g~~~~~IAa~fh~tla~~L~~~a~~~~~~~g----------~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~ 697 (711)
T TIGR00143 628 GEDRSKIAHIAHKFVASGLVEIATAIAVPFG----------IHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPP 697 (711)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCC
Confidence 3578899999999998888877777654333 6789999999999999999998875 6676543
Q ss_pred CCCccHHHHHHHHH
Q 009868 455 DIETTALGAAFAAG 468 (523)
Q Consensus 455 ~~e~~alGaA~lA~ 468 (523)
...+.++|.|++|+
T Consensus 698 nDgGislGQa~~a~ 711 (711)
T TIGR00143 698 GDGGISLGQAVAAA 711 (711)
T ss_pred CHHHHHHHHHHHhC
Confidence 34566788877663
|
A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression. |
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.25 Score=50.41 Aligned_cols=81 Identities=26% Similarity=0.188 Sum_probs=61.7
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCC----C
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPAD----I 456 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~----~ 456 (523)
++.++.+++.+.++-.+.+.++...+..+ +++|.++||.+.|..+++.+.+.+ |.++.++.. .
T Consensus 226 ~~~~iA~s~q~~l~~~l~~~~~~~~~~~~----------~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D 295 (332)
T PRK09604 226 TKADIAASFQAAVVDVLVIKTKRALKQTG----------VKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTD 295 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcH
Confidence 47899999999998888888777655333 678999999999999999999998 788887553 3
Q ss_pred CccHHHHHHHHHHhcccc
Q 009868 457 ETTALGAAFAAGLAIGVF 474 (523)
Q Consensus 457 e~~alGaA~lA~~~~G~~ 474 (523)
.+.++|+|-+-..-.|..
T Consensus 296 ~gisIg~ag~~~~~~g~~ 313 (332)
T PRK09604 296 NAAMIAAAGYERLKAGEF 313 (332)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 455666665555555543
|
|
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.28 Score=49.76 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCCCCcc
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPADIETT 459 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~~e~~ 459 (523)
.++.++.+++.+.++-.+-...+...+..+ +++|.++||.+.|..+++.+.+.+ |.+|.+++..-++
T Consensus 212 ~~~~diAa~fq~~l~~~l~~~~~~~~~~~g----------~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~ 281 (323)
T PRK14878 212 ERLEDVCYSLRETAFAMLVEVTERALAHTG----------KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAG 281 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCc
Confidence 346899999999998888887777655433 678999999999999999999987 8888886643334
Q ss_pred HHHHHH
Q 009868 460 ALGAAF 465 (523)
Q Consensus 460 alGaA~ 465 (523)
--|+++
T Consensus 282 D~GimI 287 (323)
T PRK14878 282 DNGAMI 287 (323)
T ss_pred hHHHHH
Confidence 444433
|
|
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.33 Score=49.97 Aligned_cols=82 Identities=20% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCC-ceeecC--CCCcc
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGS-PVIRPA--DIETT 459 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~--~~e~~ 459 (523)
....|++.++..-+--.+...++.+.+.+|.+ +.|.++||.+-|-.+++.+++..+. .|.++. ..++.
T Consensus 133 ~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~---------~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ 203 (360)
T PF02543_consen 133 QRHADLAASAQKVLEEIVLHLVRHLLERTGID---------NNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGL 203 (360)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-----------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcch
Confidence 45677775555444444444555554445532 3499999999999999999999765 477755 46688
Q ss_pred HHHHHHHHHHhccc
Q 009868 460 ALGAAFAAGLAIGV 473 (523)
Q Consensus 460 alGaA~lA~~~~G~ 473 (523)
|+|||+.+....+.
T Consensus 204 aiGaA~~~~~~~~~ 217 (360)
T PF02543_consen 204 AIGAALYAWHELGG 217 (360)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999977654
|
The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A. |
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.17 Score=51.58 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=38.5
Q ss_pred cc-EEEEecCccccHHHHHHHHhhcCCceeec-CCCCccHHHHHHH
Q 009868 423 EF-LLRVDGGATVNNLLMQIQADLLGSPVIRP-ADIETTALGAAFA 466 (523)
Q Consensus 423 ~~-~i~~~GG~a~s~~~~qi~Advlg~pv~~~-~~~e~~alGaA~l 466 (523)
++ .|+++||+|+-+.+.+.+++.++.||.+. ++.++.++||+..
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 55 59999999999999999999999999986 4566788899886
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.59 Score=46.08 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=37.6
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHH
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~ 65 (523)
+..++++|||||+++|+++.+.+++++.....+-.. -..|. -.|.+...+.+.+.++.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~--vr~G~-i~di~~a~~~i~~~~~~ 79 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADV--VRDGI-VVDFIGAVTIVRRLKAT 79 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccc--cCCCE-EeeHHHHHHHHHHHHHH
Confidence 356899999999999999998887766554443321 13454 55655555544444433
|
|
| >TIGR00749 glk glucokinase, proteobacterial type | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.13 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEecCCCCceEEEEcCCCCEEEE
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
|.+|||+|++|++++|.+|+++..
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee
Confidence 469999999999999998776644
|
This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.23 Score=50.84 Aligned_cols=62 Identities=23% Similarity=0.234 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhh-ccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDA-VEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA 454 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~-g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~ 454 (523)
..+.++..++-++-+++..++-..... +.+ +++|+++||+++.+-+.+.+++.||.||++.+
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~--------i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGES--------IERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------CCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 467888999999999999999765432 445 99999999999999999999999999999865
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.42 Score=47.10 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHH-----HhhcCCceeecC-CCCcc
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQ-----ADLLGSPVIRPA-DIETT 459 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~-----Advlg~pv~~~~-~~e~~ 459 (523)
....+.++++.+..+...+..+.+..+.. -..|++.||.++|+.+.+-+ ..+...|+.++. ....+
T Consensus 192 d~~a~~Il~~a~~~la~~i~~~~~~~~~~--------~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 263 (271)
T PF01869_consen 192 DEVARDILAEAADELAELIKAVLKRLGPE--------KEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDP 263 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCTCC--------CCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccH
Confidence 33455666777777766666554433322 22399999999997776655 444455666654 45578
Q ss_pred HHHHHHHH
Q 009868 460 ALGAAFAA 467 (523)
Q Consensus 460 alGaA~lA 467 (523)
++|||++|
T Consensus 264 a~GAallA 271 (271)
T PF01869_consen 264 AYGAALLA 271 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999987
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.29 Score=49.62 Aligned_cols=51 Identities=29% Similarity=0.295 Sum_probs=44.4
Q ss_pred ccEEEEecCccccHHHHHHHHhhc-CC-ceeecCCCCccHHHHHHHHHHhccc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLL-GS-PVIRPADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advl-g~-pv~~~~~~e~~alGaA~lA~~~~G~ 473 (523)
+++|+++||.+|-|-..|++-|.| |+ |-.-....|+.|.|||..|++-.|.
T Consensus 363 ideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 363 IDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred CceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc
Confidence 899999999999999999999999 44 4444567899999999999988775
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.79 Score=47.47 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=29.7
Q ss_pred ccE-EEEecCccccHHHHHHHHhhcCCceeecCC
Q 009868 423 EFL-LRVDGGATVNNLLMQIQADLLGSPVIRPAD 455 (523)
Q Consensus 423 ~~~-i~~~GG~a~s~~~~qi~Advlg~pv~~~~~ 455 (523)
+.+ |+++||+|+.+.+.+++.+.|+.||.+..+
T Consensus 314 i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 314 LNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred CCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 555 999999999999999999999999988653
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.72 Score=45.03 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=52.4
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
+.++.||+=|.|+.|.+++|++++++.+++.....+. ..+.+..-+.+.+.++++..+ .+++++.-+.++|
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~------~ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~lg 72 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHW------LIGSTTCASRIEDMIREAKEK---AGWDKKGPLRSLG 72 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeeccccccc------cCCchHHHHHHHHHHHHHHhh---cCCCccCccceee
Confidence 4689999999999999999999999988766544322 223456777888888888776 5665443245555
Q ss_pred Ec
Q 009868 86 LT 87 (523)
Q Consensus 86 is 87 (523)
++
T Consensus 73 L~ 74 (336)
T KOG1794|consen 73 LG 74 (336)
T ss_pred ee
Confidence 43
|
|
| >PTZ00288 glucokinase 1; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.99 Score=47.16 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=37.9
Q ss_pred CceEEEEecCCCCceEEEEcC---CCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 6 EVFIGAIDQGTTSTRFIIYDH---QARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~---~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
-.|++++|||+|++|.++++. ++..+...++.+++ .-+|..+..+.+.+.+.++.+.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~ 84 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV-------TKTDIRELLEFFDEVLQKLKKN 84 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc-------ccccHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999986 22233333343331 1246777777777777776654
|
|
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.61 Score=49.24 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=40.3
Q ss_pred EEEEecCCCCceEEEEc---CCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 9 IGAIDQGTTSTRFIIYD---HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d---~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
+|.+|+|+|.+|+.+|| .+.+++++++.++. ++ ++++...+.++++++.++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT--------v~--~~Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT--------VE--PGDVTIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC--------cC--cccHHHHHHHHHHHHHHh
Confidence 57799999999999999 47889998888876 22 245677777787777766
|
|
| >PRK13331 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.69 Score=44.97 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCc-------eeecC
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSP-------VIRPA 454 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~p-------v~~~~ 454 (523)
..|...|-..++-|.+..+..+++.+++..+ + -+|+++||.+ +++++.+..+ ..+
T Consensus 173 ~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~-~---------~~vi~TGG~a------~~l~~~~~~~~~~~~~~~~~-- 234 (251)
T PRK13331 173 TNTQEAIQSGVIYTILAGLRDFIEDWLSLFP-D---------GKIVLTGGDG------ELLHNYLQDLDPELAQRLRV-- 234 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C---------CEEEEECCCH------HHHHHHhhccccccccccEE--
Confidence 4688889999999999999999998887554 4 3699999965 3444444442 333
Q ss_pred CCCccHHHHHHHH
Q 009868 455 DIETTALGAAFAA 467 (523)
Q Consensus 455 ~~e~~alGaA~lA 467 (523)
.++-...|-.+++
T Consensus 235 ~~~LvL~GL~~i~ 247 (251)
T PRK13331 235 DPNLIFWGIAAIR 247 (251)
T ss_pred CcchHHHHHHHHH
Confidence 3556677776654
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=7.4 Score=47.43 Aligned_cols=74 Identities=18% Similarity=0.095 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCc-cccHHHHHHHHhhc------CCceeecC-
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGA-TVNNLLMQIQADLL------GSPVIRPA- 454 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~qi~Advl------g~pv~~~~- 454 (523)
.+++|++|+++--|.+++-++--...+. .. +++|+.+|+. ..++..++.++..+ ++.-..++
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~~--~~--------~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~h 1431 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSRV--QG--------VPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEH 1431 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecC
Confidence 3589999999999999998875444332 23 7899999995 46899999999887 44455555
Q ss_pred CCCccHHHHHHH
Q 009868 455 DIETTALGAAFA 466 (523)
Q Consensus 455 ~~e~~alGaA~l 466 (523)
..-.+|+||++.
T Consensus 1432 egy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1432 DGYLGALGCATL 1443 (1452)
T ss_pred ccccHHhhhhhc
Confidence 445889999884
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.43 Score=48.88 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhc-cccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAV-EKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD 455 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g-~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~ 455 (523)
.+.++..++-++-+++..++......+ .+ +++|+++||+++-+-+...++..||.||++.+.
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~--------i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P 315 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNS--------LDGLVLAGGGATLSGLDAAIYQRLGLPTEVANP 315 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcc--------cceEEEECccccchhHHHHHHHHHCCCeEecCh
Confidence 457889999999888888877654332 33 899999999999999999999999999998653
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PLN02914 hexokinase | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.83 Score=48.77 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=56.4
Q ss_pred eEEEEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhC-CCCcccCceE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATAD-GHNVDSGLKA 83 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~I~a 83 (523)
.+++||+|+||.|+++++..|+ ++...+..++ .|.. ...-..+++++-+.++|.+.+++-... .....+ ..-
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~--ip~~-l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~-~l~ 171 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVS--IPQE-LMFGTSEELFDFIASGLANFVAKEGGKFHLPEGR-KRE 171 (490)
T ss_pred EEEEEecCCceEEEEEEEecCCCCceeeeeEEEec--CChh-hccCCHHHHHHHHHHHHHHHHHhccccccCCccc-ccc
Confidence 5788999999999999997652 4444343333 1221 123457899999999999999761100 011112 334
Q ss_pred EEEccccceeEEeeCCCCcccccccccc
Q 009868 84 IGLTNQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
+|++- -.+++. .+.--.-.+.|.
T Consensus 172 LGfTF----SFP~~Q-~si~~g~Li~WT 194 (490)
T PLN02914 172 IGFTF----SFPVKQ-TSIDSGILMKWT 194 (490)
T ss_pred ceeeE----eeeeec-CCCCceEEEEec
Confidence 66665 457764 332223345674
|
|
| >TIGR03723 bact_gcp putative glycoprotease GCP | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.1 Score=45.31 Aligned_cols=62 Identities=24% Similarity=0.201 Sum_probs=51.6
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPAD 455 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~ 455 (523)
++.++.+++.+.++-.+.+.++...+.++ +++|.++||.+.|..+++.+.+.+ +.++.++..
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~~----------~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKTG----------LKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 36899999999999988888777655333 678999999999999999999998 888887553
|
This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas |
| >PRK13324 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.89 Score=44.47 Aligned_cols=70 Identities=11% Similarity=-0.006 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|...++-|.+..+...++.+++..+.+ -+++++||.++ .+.+ ...+..+ .++-...
T Consensus 183 ~nT~~ai~sG~~~g~~~~i~~~~~~~~~~~~~~---------~~vi~TGG~a~--~~~~-----~~~~~~~--~~~LvL~ 244 (258)
T PRK13324 183 YDTKTNIRSGLYYGHLGALKELKRRSVEEFGSP---------VYTIATGGFAG--LFKE-----EDIFNEI--SPDLILR 244 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCChH--Hhcc-----cCCcceE--CcChHHH
Confidence 356777777788888888888888877655433 36899999863 2311 2333333 3556777
Q ss_pred HHHHHHHH
Q 009868 462 GAAFAAGL 469 (523)
Q Consensus 462 GaA~lA~~ 469 (523)
|-.+++..
T Consensus 245 GL~~i~~~ 252 (258)
T PRK13324 245 GIRIAFLE 252 (258)
T ss_pred HHHHHHHH
Confidence 87776553
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.28 Score=49.62 Aligned_cols=43 Identities=23% Similarity=0.166 Sum_probs=34.5
Q ss_pred cEEEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHHH
Q 009868 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAFA 466 (523)
Q Consensus 424 ~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~l 466 (523)
+-|+++||+|+-+-+-+.+++-++.||.+.+.++ +.+.|+..+
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~ 318 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKL 318 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHH
Confidence 3499999999999999999999999999988554 667788653
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=1.4 Score=44.91 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecCCCCccHH
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPADIETTAL 461 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~~~e~~al 461 (523)
+.++.+++.|.++-.+...++...+.. . +++|+++||.+.|..+++.+.+.+ +.+++.++.. -+.=
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~a~~~~--~--------~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~-~ctD 304 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTERAMSHC--G--------SNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDER-YCID 304 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--C--------CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChH-hhhh
Confidence 679999999998888766665543322 3 678999999999999999999886 7788876532 2222
Q ss_pred HHHHHHHHh
Q 009868 462 GAAFAAGLA 470 (523)
Q Consensus 462 GaA~lA~~~ 470 (523)
=|||+|..|
T Consensus 305 NaaMIa~~g 313 (345)
T PTZ00340 305 NGAMIAYAG 313 (345)
T ss_pred hHHHHHHHH
Confidence 344555444
|
|
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.28 Score=48.52 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.3
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
.+.+|||+|+|.+|++++|++++++..
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~ 28 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFK 28 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEE
Confidence 478999999999999999998877643
|
|
| >TIGR03722 arch_KAE1 universal archaeal protein Kae1 | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.1 Score=45.36 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhh---cCCceeecCC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADL---LGSPVIRPAD 455 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Adv---lg~pv~~~~~ 455 (523)
++.++.+++.+.++-.+.+..+...+..| +++|.++||.+.|..+++.+.+. .|.+|.+++.
T Consensus 214 ~~~diAasfq~~l~~~l~~~a~~~~~~~g----------~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 214 RLEDVCYSLQETAFAMLVEVTERALAHTG----------KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 46899999999998888888777765443 57899999999999999999995 4677876543
|
This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica. |
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=89.95 E-value=1.2 Score=48.46 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=58.3
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecC----CC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPA----DI 456 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~----~~ 456 (523)
+..++.+++.+.++-.+...+....+..| +++|.++||.+.|..+++.+.+.+ +.+|.+++ ..
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g----------~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D 286 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTERALAHTG----------KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGD 286 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccc
Confidence 34789999999998888887777655444 578999999999999999999776 77888764 34
Q ss_pred CccHHHHHHHHHH
Q 009868 457 ETTALGAAFAAGL 469 (523)
Q Consensus 457 e~~alGaA~lA~~ 469 (523)
.+.++|+|.....
T Consensus 287 ~g~~ia~a~~~~~ 299 (535)
T PRK09605 287 NGAMIAWLGLLMY 299 (535)
T ss_pred hHHHHHHHHHHHH
Confidence 5667777765443
|
|
| >COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.4 Score=44.58 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc-CCcee
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-GSPVI 451 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl-g~pv~ 451 (523)
-+++|..+.+.|-.+-.+-..+..+ ... .++++++|||.+|+++|+.+|..+ |.+|.
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~~~----~~~--------p~~l~vcGGG~~N~llm~rLa~l~~g~~V~ 320 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVATL----QGD--------PRRLVVCGGGRRNPLLMARLAALLEGVEVA 320 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhc----cCC--------CceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence 4788999998886666554444322 223 689999999999999999999999 54554
|
|
| >COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.88 Score=48.38 Aligned_cols=77 Identities=23% Similarity=0.205 Sum_probs=59.8
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHH-HHHHhhcCCceeecC--CCCccH
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLM-QIQADLLGSPVIRPA--DIETTA 460 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~-qi~Advlg~pv~~~~--~~e~~a 460 (523)
+-+.-+++.+|.+...+...+. +..| ..+|.++||.+.|-.|+ +++...+...|.+.+ .....|
T Consensus 260 diAasaQ~~lE~l~l~~~~~~~---~~~g----------~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~A 326 (555)
T COG2192 260 DIAASAQAYLEELVLEMLRYLR---EETG----------EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLA 326 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhC----------ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchH
Confidence 3455566888888887655543 3233 46899999999999999 999999999999865 456789
Q ss_pred HHHHHHHHHhccc
Q 009868 461 LGAAFAAGLAIGV 473 (523)
Q Consensus 461 lGaA~lA~~~~G~ 473 (523)
+|||+.+..-.+.
T Consensus 327 vGAAl~~~~~~~~ 339 (555)
T COG2192 327 VGAALAVKRELGG 339 (555)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999877654
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.19 E-value=2.7 Score=43.94 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD 455 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~ 455 (523)
.++++|=+|-+..-++.-++.. |.+... ...|+++||+++-+-...+-..+|++||.+..+
T Consensus 293 s~II~aR~~Ei~~lV~~~l~~~----g~~~~~-----~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 293 SEIIEARVEEILELVKAELRKS----GLPNHL-----PGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred HHHHHhhHHHHHHHHHHHHHHc----CccccC-----CCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 5566666666655555444433 332111 688999999999999999999999999998554
|
|
| >PLN02405 hexokinase | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.4 Score=47.13 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=42.3
Q ss_pred eEEEEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||.|++++...|+ ++...+..++ .|.. ...-..+++++-+.++|.+.+++
T Consensus 96 ~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~--ip~~-~~~gt~~~LFdfIA~~i~~fl~~ 157 (497)
T PLN02405 96 LFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVS--IPPH-LMTGSSDALFDFIAAALAKFVAT 157 (497)
T ss_pred eEEEEecCCceEEEEEEEEcCCCCceeEEEEEEee--cChh-hccCCHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999997652 4444444433 2221 12346788999999999999876
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.7 Score=42.00 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=32.8
Q ss_pred EEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHH
Q 009868 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65 (523)
Q Consensus 11 gIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~ 65 (523)
||||||+++|+++.+.+++.++....+-. --.+| .-.|.+.....+....+.
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~~~~--~~~~g-~I~d~~~~~~~l~~l~~~ 52 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQFAD--VVRDG-IVVDFLGAVEIVRRLKDT 52 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEecccc--cccCC-eEEEhHHHHHHHHHHHHH
Confidence 69999999999999987765544333221 11233 556877766555554433
|
|
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.75 Score=54.71 Aligned_cols=76 Identities=17% Similarity=0.046 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCc-eeecC-CCCccH
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSP-VIRPA-DIETTA 460 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~p-v~~~~-~~e~~a 460 (523)
.+.++...++++-..-.+...+..+....|.+|. ...++..||+. ++..-.+|+.||+| |.++. ..-.+|
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr------~~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA 525 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETA------NHALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSA 525 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC------CceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHH
Confidence 3567777777777666666666666544577621 24456666654 78889999999999 87775 445678
Q ss_pred HHHHHH
Q 009868 461 LGAAFA 466 (523)
Q Consensus 461 lGaA~l 466 (523)
+|+++.
T Consensus 526 ~G~~~a 531 (1275)
T PLN02666 526 YGMGLA 531 (1275)
T ss_pred HHHHhh
Confidence 898764
|
|
| >PLN02362 hexokinase | Back alignment and domain information |
|---|
Probab=88.13 E-value=1.7 Score=46.78 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=40.3
Q ss_pred eEEEEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||.|+++++..|+ .+...+..++ .|.. -..-..+++++-+.++|.+.+++
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~--Ip~~-l~~~~~~eLFd~IA~~i~~fl~~ 157 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHP--IPQH-LMNSTSEVLFDFIASSLKQFVEK 157 (509)
T ss_pred eEEEEecCCceEEEEEEEecCCCcceeeceeEEEe--cChh-hccCCHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999997663 2222112222 1221 11235789999999999999876
|
|
| >TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family | Back alignment and domain information |
|---|
Probab=87.97 E-value=1.3 Score=44.68 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPA 454 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~ 454 (523)
++.++.+++.+.++-.+-+.++...+..+ +++|.++||.+.|..+++.+.+.+ +.++.+++
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~~~~~~g----------~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKRALKDTG----------PKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 46899999999999888887777655333 678999999999999999999987 66777754
|
This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. |
| >PLN02596 hexokinase-like | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.8 Score=46.34 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=40.8
Q ss_pred eEEEEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||.|+++++..|+ +....+..++ .|.. ...-..+++++-+.++|.+.+++
T Consensus 97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~--Ip~~-l~~~t~~eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEIS--IPSN-VLNGTSQELFDYIALELAKFVAE 158 (490)
T ss_pred EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEec--CChH-hhcCCHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999998764 2333333332 1211 12235788999999999999876
|
|
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.67 E-value=1.9 Score=42.07 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC--CceeecC-CCC
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG--SPVIRPA-DIE 457 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg--~pv~~~~-~~e 457 (523)
.-++-++++++|++..-+-.+.....-+ ++-|+++||.+++..++..+.+-+. .||.+.. ..|
T Consensus 269 ~~a~~~~~AmayQVaKeIG~~savL~G~--------vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~E 334 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGAMSAVLKGK--------VDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDE 334 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCC--------CCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchH
Confidence 4555677888898877776665433334 8999999999999999999999876 6777744 444
|
|
| >KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.59 E-value=1.1 Score=48.66 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=44.5
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCc-eee-cCCCCccHHHHHHHHHHhccccC
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSP-VIR-PADIETTALGAAFAAGLAIGVFK 475 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~p-v~~-~~~~e~~alGaA~lA~~~~G~~~ 475 (523)
+..|+++||.++-|.+.+++.|.|+-. +.. ....|+.|+|||+.|+.-.|...
T Consensus 335 i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~ 389 (620)
T KOG0101|consen 335 IDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKS 389 (620)
T ss_pred CceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcc
Confidence 899999999999999999999999853 222 34678999999999998877543
|
|
| >PRK13326 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=87.39 E-value=2 Score=42.18 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|-..++-|.+..+..+++.+++..+.+ -.|+++||.+ ++++..+..+..+ .++-+..
T Consensus 185 ~nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~---------~~vv~TGG~a------~~l~~~~~~~~~~--~~~LvL~ 247 (262)
T PRK13326 185 LSTSDSVNSGVIYQYKYLIEGVYHDLKRNYDRE---------FNLIITGGNS------NLILPLISVDFIF--NLYLTLE 247 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCH------HHHHhhCCCCcEE--CcccHHH
Confidence 468888999999999999999999998765533 3699999965 4566667777665 3556777
Q ss_pred HHHHHH
Q 009868 462 GAAFAA 467 (523)
Q Consensus 462 GaA~lA 467 (523)
|-+++.
T Consensus 248 GL~~i~ 253 (262)
T PRK13326 248 GIRILG 253 (262)
T ss_pred HHHHHH
Confidence 776654
|
|
| >PTZ00107 hexokinase; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=2.6 Score=44.91 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=40.6
Q ss_pred eEEEEecCCCCceEEEEcCCCC-EEEEEEeeeee--cc---CCCCe-EEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR-PIGSHQVEFTQ--FY---PEAGW-VEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~-i~~~~~~~~~~--~~---~~~g~-~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||.|+++++..|. .....+..+.. .. +.+.. .+...+++++.+.++|.+.+++
T Consensus 75 ~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~ 143 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE 143 (464)
T ss_pred eEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 4778999999999999998664 22222222221 11 11111 1125789999999999999876
|
|
| >TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein | Back alignment and domain information |
|---|
Probab=87.18 E-value=0.74 Score=46.32 Aligned_cols=31 Identities=26% Similarity=0.212 Sum_probs=26.7
Q ss_pred EEEecCCCCceEEEEcCCCCEEEEEEeeeee
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGSHQVEFTQ 40 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~ 40 (523)
+|+|||+-|+|++++|.+|++....+.+.|+
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl 31 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL 31 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcc
Confidence 5899999999999999999888777666664
|
This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages. |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=86.08 E-value=2.5 Score=41.75 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=22.2
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEE
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
.+|||+|+|-+|.+.+|++++++..
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~ 26 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFK 26 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEE
Confidence 5899999999999999999988743
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=85.79 E-value=1.2 Score=46.17 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=44.9
Q ss_pred EEEEecCCCCceEEEEcC--CC--CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 9 IGAIDQGTTSTRFIIYDH--QA--RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~--~g--~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
++||||||+++|+++... ++ ++++....|.. --..| .-.|++.+-+++.++++++-++ .+...++ ..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~--gi~~G-~I~d~~~~~~~i~~al~~~e~~---~~~~i~~--v~~ 73 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR--GIKKG-VINDIEAAVGSIQRAIEAAELM---AGCEIRS--VIV 73 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCc-EEEcHHHHHHHHHHHHHHHHHH---hCCcccE--EEE
Confidence 679999999999999763 34 34444444322 11234 4568888888888887777555 3444333 235
Q ss_pred EEcc
Q 009868 85 GLTN 88 (523)
Q Consensus 85 gis~ 88 (523)
++++
T Consensus 74 ~v~g 77 (371)
T TIGR01174 74 SISG 77 (371)
T ss_pred EEcc
Confidence 5555
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK13320 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=85.62 E-value=2.9 Score=40.62 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
.+|...+...++-|.+..+...++.+++..+ + -.|+++||.+ +++++.+..++.+ .++-...
T Consensus 173 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~-~---------~~vi~TGG~a------~~l~~~l~~~~~~--~p~Lvl~ 234 (244)
T PRK13320 173 RSTEECIRSGVVWGCVAEIEGLIEAYKSKLP-E---------LLVILTGGDA------PFLASRLKNTIFA--DEHAVLK 234 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C---------CEEEEECCCH------HHHHHhcCCccEE--CcchHHH
Confidence 4688888888888888888888888876544 3 3699999976 4466666777665 3455666
Q ss_pred HHHHHH
Q 009868 462 GAAFAA 467 (523)
Q Consensus 462 GaA~lA 467 (523)
|-..+.
T Consensus 235 GL~~~~ 240 (244)
T PRK13320 235 GLNRIL 240 (244)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.13 E-value=4.2 Score=41.46 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=52.5
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCC-CeEE-eCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEA-GWVE-HEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~-g~~e-~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
.+||||-.+..+-++|+|.+|+++........ .+.. |-+. .....-.+.+...+++++++ +++.+++ |.+|+
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~---a~~~~~d-id~Ia 75 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVKEALEE---AKITPSD-ISLIC 75 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEE
Confidence 58999999999999999987888876544332 2222 3222 22333456677777777776 6788889 99999
Q ss_pred Ecc
Q 009868 86 LTN 88 (523)
Q Consensus 86 is~ 88 (523)
++.
T Consensus 76 vt~ 78 (345)
T PTZ00340 76 YTK 78 (345)
T ss_pred Eec
Confidence 876
|
|
| >COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=84.74 E-value=1.6 Score=48.55 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=48.4
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
++.+|||+|+|.+-++++|.++.++...+..+. |+.....+...++.+.... ...+ |..|.+
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt------------P~~~~~~~~~~~~~~~~~~-----~~~~-i~~v~~ 63 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT------------PDLPSGIVNAGIRLALELL-----EGSE-VDLVVH 63 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC------------CCchhhHHHHHHHHHhhcc-----cccc-ccEEEE
Confidence 578999999999999999997766666655543 2333333444444443321 0135 777888
Q ss_pred ccccceeEEeeCCCCc
Q 009868 87 TNQRETTVLWSKSTGC 102 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~ 102 (523)
+++-.+--++-+ +|.
T Consensus 64 gTT~aTNaller-kG~ 78 (674)
T COG0145 64 GTTLATNALLER-KGL 78 (674)
T ss_pred eccHHHHHHHhc-cCc
Confidence 777666555555 454
|
|
| >TIGR00671 baf pantothenate kinase, type III | Back alignment and domain information |
|---|
Probab=84.41 E-value=3.2 Score=40.27 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcccc
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVN 435 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s 435 (523)
..|..-|...++.|.+..+..+++.+++..+.+ -+|+++||-++.
T Consensus 175 ~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~---------~~vi~TGG~a~~ 219 (243)
T TIGR00671 175 KSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRK---------FAVVITGGDGKY 219 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCchHh
Confidence 468899999999999999999999887755433 469999997753
|
This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli. |
| >KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.28 E-value=11 Score=37.22 Aligned_cols=80 Identities=26% Similarity=0.192 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhcCC-----ceeecCCCCcc
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLLGS-----PVIRPADIETT 459 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advlg~-----pv~~~~~~e~~ 459 (523)
+.++|=.=|-++-.++.++..+-.. .++ +..=.|+.+||..+ ++.|++=+-+-+-. .++....++.+
T Consensus 234 ~~ifr~Ag~~Lg~~V~aVl~~l~~~-~k~------g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ss 306 (336)
T KOG1794|consen 234 AEIFRNAGETLGRHVVAVLPQLPPT-LKK------GKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESS 306 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCch-hcc------cCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccc
Confidence 4455555555666666655554321 111 01345889999986 55665543333222 25556678899
Q ss_pred HHHHHHHHHHhcc
Q 009868 460 ALGAAFAAGLAIG 472 (523)
Q Consensus 460 alGaA~lA~~~~G 472 (523)
|+|||++|+.-.+
T Consensus 307 AvgAA~laa~~~~ 319 (336)
T KOG1794|consen 307 AVGAAILAASLDN 319 (336)
T ss_pred hHHHHHHhhhhcc
Confidence 9999999997655
|
|
| >KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.96 E-value=9.4 Score=38.14 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhcC
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLLG 447 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advlg 447 (523)
...++|++||++--|.+++-++...... ... +++|+..|-..| ++.-|..+|=.++
T Consensus 274 ~~s~eDia~SlL~mIsnNIGqiAyl~A~--~~n--------i~rV~FgG~fiR~~~itM~tLsyAi~ 330 (371)
T KOG2201|consen 274 SVSKEDIARSLLRMISNNIGQIAYLCAL--NEN--------IKRVYFGGFFIRGHPITMKTLSYAIN 330 (371)
T ss_pred ccChHHHHHHHHHHHHhhHHHHHHHHHH--HhC--------ccEEEEeeeEEecCceehHHHHHHHH
Confidence 4789999999999999999887654432 334 899999998887 5666888776653
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.77 E-value=2.8 Score=41.82 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD 455 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~ 455 (523)
..+.++-+++.+.-++++.++-+-..++.. +++.|+++||+++-.-+-+.+.+.++.|+++.++
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~-------~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQFYLSQSEMV-------DIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccc-------eeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 356788889999999999998776544432 2899999999999999999999999999999654
|
|
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=5.4 Score=40.19 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccH--HHHHHHHhhcCCceeecCCCCccHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNN--LLMQIQADLLGSPVIRPADIETTALGA 463 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~--~~~qi~Advlg~pv~~~~~~e~~alGa 463 (523)
...++...+.++..+..++-. .+ ++.|++.||.++.+ .+.+.+.+.+..++... ..+++++||
T Consensus 241 ~~aid~~~~~LA~~IAnLi~l------lD--------Pe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~L-G~dAGaiGA 305 (326)
T PRK00976 241 KLAIDTLALFVAMEIASLLLL------NP--------EDNVVLAGSVGEMDEPDVSERIKELLDKKVLVL-GKESAAIGL 305 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cC--------CCEEEEcCccccCchhHHHHHHHHHhccccccc-CCchHHHHH
Confidence 344555555555554444322 24 68899999999876 45666666665443322 468899999
Q ss_pred HHHHHHhc
Q 009868 464 AFAAGLAI 471 (523)
Q Consensus 464 A~lA~~~~ 471 (523)
|++|..-.
T Consensus 306 A~iA~~i~ 313 (326)
T PRK00976 306 ALIARDIF 313 (326)
T ss_pred HHHHHHHh
Confidence 99987643
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=83.56 E-value=2.1 Score=43.19 Aligned_cols=80 Identities=24% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc----CCceeecCC----CCcc
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL----GSPVIRPAD----IETT 459 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl----g~pv~~~~~----~e~~ 459 (523)
-+.|.+|+++-.+...+- .. .+ ++.|+++|-.++++.+..-+.+.| +.++..... ...+
T Consensus 239 a~ea~~E~i~k~V~~l~~----~~-~~--------~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKea 305 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLA----SV-PD--------PDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEA 305 (343)
T ss_pred HHHHHHHHHHHHHHHHhc----cc-CC--------CCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhh
Confidence 566777877766553321 11 13 688999999999988776665555 445654433 2348
Q ss_pred HHHHHHHHH-HhccccCChhHH
Q 009868 460 ALGAAFAAG-LAIGVFKEEEIF 480 (523)
Q Consensus 460 alGaA~lA~-~~~G~~~~~~~a 480 (523)
|.|+|++|- .+-|.|+.+-+.
T Consensus 306 A~GaAiIA~glaGG~~~~lv~~ 327 (343)
T PF07318_consen 306 AQGAAIIANGLAGGRYKELVDH 327 (343)
T ss_pred hhhHHHHhhhhhcccHHHHHHH
Confidence 999999984 555677665443
|
The function of this family is unknown. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=83.53 E-value=3.4 Score=42.17 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=30.5
Q ss_pred EEecCCCCceEEEEcCCCC---EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHH
Q 009868 11 AIDQGTTSTRFIIYDHQAR---PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65 (523)
Q Consensus 11 gIDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~ 65 (523)
|||||+.++|++-++..++ +......++|...-.+| ...|++.+-+++.+++++
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~L~~~~~~ 57 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEALKELLKE 57 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHHHHHHHHHH
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHHHHHHHHH
Confidence 8999999999999997543 33445666653222233 335777655555444433
|
|
| >COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.30 E-value=4.5 Score=44.47 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCC---cee----ecC
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGS---PVI----RPA 454 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~---pv~----~~~ 454 (523)
..+++.++.+...+++-.+.+++..+.+..| +++|.++||..+|+.+++-+++.+.. .+. ++.
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~~g----------i~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~ 732 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKKYG----------INKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPA 732 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------ccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCC
Confidence 4678888888888888888888777766444 67999999999999999999999974 333 334
Q ss_pred CCCccHHHHHHHHH
Q 009868 455 DIETTALGAAFAAG 468 (523)
Q Consensus 455 ~~e~~alGaA~lA~ 468 (523)
..-+-++|=|+.|+
T Consensus 733 ~DggIslGQ~v~~~ 746 (750)
T COG0068 733 GDGGISLGQAVAAA 746 (750)
T ss_pred CCCceeHHHHHHHH
Confidence 44556889888773
|
|
| >KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.23 E-value=1.2 Score=47.25 Aligned_cols=54 Identities=26% Similarity=0.244 Sum_probs=47.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC-ceeecCCCCccHHHHHHHHHHhccccCC
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS-PVIRPADIETTALGAAFAAGLAIGVFKE 476 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~~~e~~alGaA~lA~~~~G~~~~ 476 (523)
+++|.+.||++|-|-..+.+.++||+ |-.-+.+.|+.|+|||+.+++-.|..++
T Consensus 354 i~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkd 408 (640)
T KOG0102|consen 354 INEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKD 408 (640)
T ss_pred hhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccc
Confidence 89999999999999999999999985 4455678899999999999887776654
|
|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=83.18 E-value=5.8 Score=40.42 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=50.1
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeee-eccCCCCeE-EeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT-QFYPEAGWV-EHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~-~~~~~~g~~-e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++||||-.+-.+-++|+|.+++++........ ...+..|.. +.....--+.+...+++++++ .++++.+ |.+|+
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~---~~~~~~d-id~ia 77 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKE---AGLTLED-IDAIA 77 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEEE
Confidence 58999997778889999877688876543221 111122321 222233455666677777776 6788889 99998
Q ss_pred Ecc
Q 009868 86 LTN 88 (523)
Q Consensus 86 is~ 88 (523)
++.
T Consensus 78 vt~ 80 (332)
T PRK09604 78 VTA 80 (332)
T ss_pred Eec
Confidence 876
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.09 E-value=3.4 Score=38.26 Aligned_cols=63 Identities=24% Similarity=0.182 Sum_probs=48.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCC-CccHHHHHHH
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADI-ETTALGAAFA 466 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~-e~~alGaA~l 466 (523)
+-|+|-+|-..+..++ +.. ++.+++.||.+.-+-.-.++-.-|+++|+.+..+ --+.||-|+-
T Consensus 208 ~PV~eKMAeIv~~hie------~~~--------i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 208 KPVYEKMAEIVARHIE------GQG--------ITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred hHHHHHHHHHHHHHhc------cCC--------CcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhc
Confidence 3477777766666543 334 7889999999988888889999999999998854 4678887763
|
|
| >COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.74 E-value=1.8 Score=42.24 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=27.4
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEe
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQV 36 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~ 36 (523)
...+++.||=||||.|+-|++.+|+++.+.+-
T Consensus 3 ~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~ 34 (306)
T COG3734 3 SEPAYIAIDWGTTNLRAWLVRGDGAVLAERRS 34 (306)
T ss_pred CCceEEEEecCCccEEEEEEcCCcceeeeecc
Confidence 34678999999999999999999998876543
|
|
| >COG5026 Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.52 E-value=2 Score=44.44 Aligned_cols=60 Identities=15% Similarity=-0.010 Sum_probs=40.6
Q ss_pred ceEEEEecCCCCceEEEEcCC--CCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQ--ARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~--g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.-+|+||+|+||.|++++... |+..-+.+. +. .|..=...+.++++|.-+++.++..+++
T Consensus 75 g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~sk-s~--lp~e~~~~~~~~~l~~~iadrl~~fi~~ 136 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVLGGDGTFDIEQSK-SF--LPVECRDSESRDELFGFIADRLAAFIKE 136 (466)
T ss_pred CCEEEEecCCceEEEEEEEeCCCCCcccccCc-cc--CchhhccCCChHHHHHHHHHHHHHHHHH
Confidence 457899999999999999864 544322211 11 2222122337899999999999988776
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=82.01 E-value=6.1 Score=42.87 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=47.4
Q ss_pred CCceEEEEecCCCCceEEEEcCC-C--CEEEEEEeeeeecc--CCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQ-A--RPIGSHQVEFTQFY--PEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDS 79 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~-g--~i~~~~~~~~~~~~--~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (523)
....+.+|||||.|+|..+++.+ | +++...+..+..-. ...| .-++ +-.+..++++++..+.++..+ .++
T Consensus 9 ~~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~-e~~~r~~~~L~~F~~~~~~~~--v~~ 83 (513)
T PRK10854 9 RPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSE-EAMERGLNCLSLFAERLQGFS--PAN 83 (513)
T ss_pred CCCEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCH-HHHHHHHHHHHHHHHHHHhCC--CCe
Confidence 35578899999999999999853 4 33433433333211 1122 2233 345556677777666554333 346
Q ss_pred CceEEEEcccc
Q 009868 80 GLKAIGLTNQR 90 (523)
Q Consensus 80 ~I~aIgis~~~ 90 (523)
+.+++.++.+
T Consensus 84 -v~~vATsAlR 93 (513)
T PRK10854 84 -VCIVGTHTLR 93 (513)
T ss_pred -EEEEehHHHH
Confidence 7888777743
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.58 E-value=6.6 Score=42.39 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=49.0
Q ss_pred CcccCCceEEEEecCCCCceEEEEcC-CCCE--EEEEEeeeeec--cCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCC
Q 009868 1 MAKAKEVFIGAIDQGTTSTRFIIYDH-QARP--IGSHQVEFTQF--YPEAGWVEHEPMEILESVRVCMAKALDKATADGH 75 (523)
Q Consensus 1 m~~~~~~~~lgIDiGtt~~K~~l~d~-~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~ 75 (523)
|.+. ..++.+|||||.|+|..+++. +|.+ +...+..+..- ....| .-+++ -.+..++++++..+.++..+
T Consensus 1 ~~~~-~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-~i~r~~~~L~~F~~~~~~~~- 75 (496)
T PRK11031 1 MLSS-SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNE-AMERGWQCLRLFAERLQDIP- 75 (496)
T ss_pred CCCC-CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHH-HHHHHHHHHHHHHHHHHhCC-
Confidence 4444 557888999999999999995 3533 33333333321 11223 22333 34556677777666554333
Q ss_pred CcccCceEEEEcccc
Q 009868 76 NVDSGLKAIGLTNQR 90 (523)
Q Consensus 76 ~~~~~I~aIgis~~~ 90 (523)
..+ |.+++.++.+
T Consensus 76 -v~~-i~~vATsAvR 88 (496)
T PRK11031 76 -PSQ-IRVVATATLR 88 (496)
T ss_pred -CCe-EEEEEeHHHH
Confidence 346 8888877744
|
|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=81.52 E-value=4.8 Score=40.34 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=43.6
Q ss_pred EEEEecCCCCceEEEEcCC-C--CEEEEEEeeeeeccC--CCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 9 IGAIDQGTTSTRFIIYDHQ-A--RPIGSHQVEFTQFYP--EAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~-g--~i~~~~~~~~~~~~~--~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
+.+||+||.++|..+++.+ + +++...+.++..-.. ..| ..+++ -.+.+++++++..+.+++.++ ++ |.+
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e-~i~~~~~~l~~f~~~~~~~~v--~~-i~~ 75 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEE-AIERALEALKRFAELLRGFPV--DE-VRA 75 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHH-HHHHHHHHHHHHHHHHHhCCC--Ce-EEE
Confidence 4679999999999999963 3 333334333332111 122 22333 344556777777665543333 46 777
Q ss_pred EEEcccc
Q 009868 84 IGLTNQR 90 (523)
Q Consensus 84 Igis~~~ 90 (523)
++-++.+
T Consensus 76 vaTsa~R 82 (300)
T TIGR03706 76 VATAALR 82 (300)
T ss_pred EEcHHHH
Confidence 7766644
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=80.39 E-value=4.3 Score=40.17 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecC--ccccH-HHHHHHHhhcCCceeecCCCCccHHHH
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGG--ATVNN-LLMQIQADLLGSPVIRPADIETTALGA 463 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG--~a~s~-~~~qi~Advlg~pv~~~~~~e~~alGa 463 (523)
.-++++.|+++.++...+-. ..+ ...|+++|- .++.+ .+...+.+.|+.+|.+... +.+|.|+
T Consensus 240 lA~dal~~~vameIasLl~l-----~~~--------~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~ 305 (326)
T TIGR03281 240 LALDSLAMSVAMEIASLGLL-----DCK--------EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGL 305 (326)
T ss_pred HHHHHHHHHHHHHHHhheec-----cCC--------CCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhH
Confidence 34577888877776654321 123 458999987 67888 9999999999999999876 6799999
Q ss_pred HHHHHH
Q 009868 464 AFAAGL 469 (523)
Q Consensus 464 A~lA~~ 469 (523)
|++|--
T Consensus 306 AiIA~d 311 (326)
T TIGR03281 306 ALIAED 311 (326)
T ss_pred HHHHHH
Confidence 999864
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=80.26 E-value=4.9 Score=41.05 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=41.2
Q ss_pred ceEEEEecCCCCceEEEEcCCC---CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQA---RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g---~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
..++|||||++++|++.+...+ ++......+.|...-.+|. -.|++.+ .+++++++++ .+....+ ..
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~----~~~l~~~~~~---~~~~~k~--v~ 72 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAV----AEALKELLSE---LGINTKK--AA 72 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHH----HHHHHHHHHH---cCCCcce--EE
Confidence 3689999999999999998533 3334444454422222332 3466554 4555555555 3433223 34
Q ss_pred EEEccc
Q 009868 84 IGLTNQ 89 (523)
Q Consensus 84 Igis~~ 89 (523)
+++.+.
T Consensus 73 ~alp~~ 78 (348)
T TIGR01175 73 TAVPGS 78 (348)
T ss_pred EEecCC
Confidence 666553
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 523 | ||||
| 2d4w_A | 504 | Crystal Structure Of Glycerol Kinase From Cellulomo | 1e-133 | ||
| 3ezw_A | 526 | Crystal Structure Of A Hyperactive Escherichia Coli | 1e-124 | ||
| 1bu6_O | 501 | Crystal Structures Of Escherichia Coli Glycerol Kin | 1e-124 | ||
| 1gla_G | 501 | Structure Of The Regulatory Complex Of Escherichia | 1e-124 | ||
| 1bwf_Y | 501 | Escherichia Coli Glycerol Kinase Mutant With Bound | 1e-124 | ||
| 2dpn_A | 495 | Crystal Structure Of The Glycerol Kinase From Therm | 1e-119 | ||
| 3g25_A | 501 | 1.9 Angstrom Crystal Structure Of Glycerol Kinase ( | 1e-118 | ||
| 3d7e_O | 505 | Enterococcus Casseliflavus Glycerol Kinase Mutant H | 1e-117 | ||
| 3h45_X | 506 | Glycerol Kinase H232e With Ethylene Glycol Length = | 1e-117 | ||
| 3h3n_X | 506 | Glycerol Kinase H232r With Glycerol Length = 506 | 1e-116 | ||
| 3flc_O | 518 | Crystal Structure Of The His-Tagged H232r Mutant Of | 1e-116 | ||
| 1r59_O | 505 | Enterococcus Casseliflavus Glycerol Kinase Length = | 1e-116 | ||
| 1xup_O | 487 | Enterococcus Casseliflavus Glycerol Kinase Complexe | 1e-116 | ||
| 2zf5_O | 497 | Crystal Structure Of Highly Thermostable Glycerol K | 1e-113 | ||
| 4e1j_A | 520 | Crystal Structure Of Glycerol Kinase In Complex Wit | 1e-111 | ||
| 2w41_A | 507 | Crystal Structure Of Plasmodium Falciparum Glycerol | 2e-90 | ||
| 2w40_A | 503 | Crystal Structure Of Plasmodium Falciparum Glycerol | 2e-90 | ||
| 3gbt_A | 504 | Crystal Structure Of Gluconate Kinase From Lactobac | 1e-25 | ||
| 2itm_A | 484 | Crystal Structure Of The E. Coli Xylulose Kinase Co | 1e-18 | ||
| 3ifr_A | 508 | The Crystal Structure Of Xylulose Kinase From Rhodo | 2e-09 | ||
| 3gg4_A | 554 | The Crystal Structure Of Glycerol Kinase From Yersi | 4e-07 | ||
| 3hz6_A | 511 | Crystal Structure Of Xylulokinase From Chromobacter | 6e-07 | ||
| 3i8b_A | 515 | The Crystal Structure Of Xylulose Kinase From Bifid | 2e-06 |
| >pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504 | Back alignment and structure |
|
| >pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526 | Back alignment and structure |
|
| >pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501 | Back alignment and structure |
|
| >pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501 | Back alignment and structure |
|
| >pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501 | Back alignment and structure |
|
| >pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495 | Back alignment and structure |
|
| >pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk) From Staphylococcus Aureus In Complex With Glycerol. Length = 501 | Back alignment and structure |
|
| >pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505 | Back alignment and structure |
|
| >pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506 | Back alignment and structure |
|
| >pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506 | Back alignment and structure |
|
| >pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518 | Back alignment and structure |
|
| >pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505 | Back alignment and structure |
|
| >pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487 | Back alignment and structure |
|
| >pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497 | Back alignment and structure |
|
| >pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520 | Back alignment and structure |
|
| >pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Adp Length = 507 | Back alignment and structure |
|
| >pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Bound Glycerol Length = 503 | Back alignment and structure |
|
| >pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus Acidophilus Length = 504 | Back alignment and structure |
|
| >pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed With Xylulose Length = 484 | Back alignment and structure |
|
| >pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From Rhodospirillum Rubrum Length = 508 | Back alignment and structure |
|
| >pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia Pseudotuberculosis Length = 554 | Back alignment and structure |
|
| >pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium Violaceum Length = 511 | Back alignment and structure |
|
| >pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From Bifidobacterium Adolescentis Length = 515 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503 | Back alignment and structure |
|---|
Score = 804 bits (2079), Expect = 0.0
Identities = 200/513 (38%), Positives = 295/513 (57%), Gaps = 21/513 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
I +IDQ T ST+ YD + + S+ + Q + GW EH+P+EI+ ++ M + +
Sbjct: 5 VILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGI 64
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+V +K IG+TNQRET ++W + TG PLYNAIVW+D R + + +
Sbjct: 65 KVLKDKYTSVI--IKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAK-- 120
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
+ G +TYFSA K+LW+++N +K+ I G A+ G I+TWLI+NLT G
Sbjct: 121 YNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN- 179
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEILPKIVSNSEIIGKIGKGW--P 244
TDV+NASRT+LM++ TL WD+ + I +LP+I SN G +
Sbjct: 180 ---CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPD 236
Query: 245 ITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFK 303
IPI+GC+GDQ +A +GQA +GEAK TYGTG F+L+NTGE+VV S GL++T+ +K
Sbjct: 237 YLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYK 296
Query: 304 LGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGL 363
YALEGSI AG+ V WL + +I SE ++ + +T GV FVPAF+GL
Sbjct: 297 FNDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGL 355
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
+AP WR DAR G+T T ++HI RA+LE + FQ+ +++DS+ D G+ +
Sbjct: 356 YAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDM---GI----EML 408
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSG 483
+LR DGG T N MQ +D++ + + E T+LGAA AGL + ++ + S
Sbjct: 409 HVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSL 468
Query: 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVERTF 516
R ++ F ++++ RKKK W +AVERT
Sbjct: 469 LR-RSDAVFHSKMDDKKRKKKTSEWNKAVERTL 500
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504 | Back alignment and structure |
|---|
Score = 797 bits (2061), Expect = 0.0
Identities = 249/514 (48%), Positives = 339/514 (65%), Gaps = 18/514 (3%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ AIDQGTTS+R I++DH + Q+E Q +P AGWVEH P +I +VR + AL
Sbjct: 3 YVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLAL 62
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+ ++ A+G+TNQRET V+W K+TG P+YNAIVW D RT + +L +
Sbjct: 63 TRGNLTHEDI----AAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGGD-- 116
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + VGLP++TYFS K+ W+++NV+ +E +KGD LFG DTW++WN+TGG
Sbjct: 117 EGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTE 176
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
GG+HVTDV+NASRTMLM+L TL W + +GIP +LP I S+SE+ G + G
Sbjct: 177 GGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPG 236
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
+PI+G LGDQ AA GQAC + G+AK+TYGTG F+L+NTG E V SK+GLL+T+ +K+G
Sbjct: 237 VPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIG- 295
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
AP YALEGSIA+ G+ VQWLRD+LG+ A ++E LA +V GG YFVPAF+GLFAP
Sbjct: 296 DAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAP 355
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
+WR DARG +G+TR+ ++ HIARA LE+ FQ ++V+D+M D+ GV L
Sbjct: 356 YWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNADS---GVDLTE-----L 407
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERT 486
RVDGG N LLMQ QAD LG V+RP ETTALGAA+AAG+A+G +K E+ D +
Sbjct: 408 RVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWKGEQ--DVIDNW 465
Query: 487 KTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520
+ P + R++ +W +AV +T D
Sbjct: 466 AEDKRWSPSMESGERERLYRNWKKAVTKTMEWVD 499
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520 | Back alignment and structure |
|---|
Score = 767 bits (1983), Expect = 0.0
Identities = 231/513 (45%), Positives = 315/513 (61%), Gaps = 20/513 (3%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+I AIDQGTTSTR I++D + G Q EF Q +P++GWVEH+P EI ++V + +A+
Sbjct: 27 YILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAI 86
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+K+ +++ AIG+TNQRET V+W + TG P++NAIVW D RT++ C KL+K+
Sbjct: 87 EKSGITANDI----AAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKK-- 140
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + F++ GL + YFS KL W++ NV + KG+ FGTIDT+LIW LTGG
Sbjct: 141 GLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGG-- 198
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
TD +NASRT+L N+ WD E L +P E+LP++ + G
Sbjct: 199 -ECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLFGAA 257
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
IPI G GDQ AA +GQAC K G KSTYGTG F L+NTG+++V+SK+ LL+T+A++L
Sbjct: 258 IPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDG 317
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
+ T YALEGSI +AGAAVQWLRD L +I +A + LA + + VY VPAF GL AP
Sbjct: 318 E--TTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAP 375
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
W DARG G+TR T A ARA LE++C+Q +D+L++M KD G L
Sbjct: 376 HWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDWRRNGNDTV------L 429
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERT 486
RVDGG ++ MQ +DLL +PV RP +ETTALG A+ AG GV+ +E +
Sbjct: 430 RVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQE--AFAKSW 487
Query: 487 KTSTTFKPVLNEEFRKKKAESWCRAVERTFNLA 519
F+P ++E RK K + W AV+RT A
Sbjct: 488 ARDRRFEPHMDEATRKVKLKGWRSAVKRTLIAA 520
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495 | Back alignment and structure |
|---|
Score = 766 bits (1980), Expect = 0.0
Identities = 242/514 (47%), Positives = 321/514 (62%), Gaps = 24/514 (4%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
F+ A+DQGTTS+R I++ + RP+ + EF Q YP+ GWVEH+P+EI E+ + L
Sbjct: 3 FLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVL 62
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
+A A+ V A+G+TNQRETT+LW + TG PL+NAIVW D RT+ +C L +
Sbjct: 63 RRAGAEAGEV----LALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAK-- 116
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + F E GL YFS KL+W++ENV +K + G FGT+DTWLIWNLTGG
Sbjct: 117 GLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGG-- 174
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITG 247
+H TD +NASRT+L NL TL WD LE LGIPA +LP++ + G+
Sbjct: 175 -KVHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGAP 233
Query: 248 IPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGP 306
+PI G LGDQ AA+ GQA GE K TYGTGAF+L+NTG+ V S+ GLL+T+A+ LG
Sbjct: 234 VPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGG 293
Query: 307 KAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAP 366
+ YALEGS+ +AGAAV WL++ +G+I ++E+E LA V TG VYFVPAF GL AP
Sbjct: 294 R--ATYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAP 350
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426
+W ARG +G+TR TS+AH+ARA LE + FQV+DV+ +M+++A GV L
Sbjct: 351 YWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEA---GVRLKV-----L 402
Query: 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERT 486
+ DGG N L ++IQADLLG PV P ETTALGAA AG+ G E++ R
Sbjct: 403 KADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAGALSPEDV---AGRF 459
Query: 487 KTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520
+ + F P + E R+ W AVER A
Sbjct: 460 REAERFLPTMPEGRREALYRRWREAVERAKGWAR 493
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506 | Back alignment and structure |
|---|
Score = 762 bits (1971), Expect = 0.0
Identities = 233/519 (44%), Positives = 326/519 (62%), Gaps = 25/519 (4%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
MA+ ++ AIDQGTTS+R II+D + IGS Q EF Q++P++GWVEH EI SV+
Sbjct: 1 MAEKN--YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQ 58
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
+A A ++ + IG+TNQRETTV+W K+TG P+ NAIVW ++S +
Sbjct: 59 SVIAGAFIESGIRPEAI----AGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIAD 114
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
+L+ + G E GL I YFSA K+ W+++N++ +E G+ LFGTID+WL+W
Sbjct: 115 QLKVD--GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVW 172
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI- 239
LT G +HVTD SNASRTML N+ L+WD+ L+ L IP+ +LP++ SNSE+ G
Sbjct: 173 KLTDG---QVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTR 229
Query: 240 GKGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLS 298
+ + +PI+G GDQ AA+ GQ +KG K+TYGTGAFI+MNTGEE S + LL+
Sbjct: 230 SYRFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLT 289
Query: 299 TLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVP 358
T+ + + K YALEGSI +AG+A+QWLRD L +I ++ + EELA + VY VP
Sbjct: 290 TIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVP 347
Query: 359 AFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIK 418
AF GL AP+W +ARG G+TR T+K RA L+++ +Q KDV+D+M+KD+ G+
Sbjct: 348 AFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS---GIDI 404
Query: 419 DAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEE 478
L+VDGGA N+LLMQ QAD+L V R A++ETTALGAA+ AGLA+G +K+ +
Sbjct: 405 PL-----LKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLD 459
Query: 479 IFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFN 517
+ + F P + E R E W +AV T
Sbjct: 460 --ELKSMAEEGQMFTPEMPAEERDNLYEGWKQAVAATQT 496
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501 | Back alignment and structure |
|---|
Score = 762 bits (1969), Expect = 0.0
Identities = 235/522 (45%), Positives = 338/522 (64%), Gaps = 27/522 (5%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
M K +I +IDQGTTS+R I+++ + G Q EF Q++P++GWVEH+ EI SV
Sbjct: 4 MEK----YILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVL 59
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
M + +++ + IG+TNQRETTV+W K TG P+Y+AIVW +T S+C
Sbjct: 60 AVMTEVINENDVRADQI----AGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICS 115
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
+L+++ G + F + GL + YF+ K+ W+++NV+ +E + GD LFGTIDTWL+W
Sbjct: 116 ELKQQ--GYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVW 173
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGK-I 239
L+G H+TD SNASRT++ N+ L+WD LE L +P +LP++ ++SE+ GK I
Sbjct: 174 KLSGK---AAHITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKASSEVYGKTI 230
Query: 240 GKGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLS 298
+ +PI+G GDQ AA+ GQAC ++G+ K+TYGTG F+LMNTG++ VKS+ GLL+
Sbjct: 231 DYHFYGQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAVKSESGLLT 290
Query: 299 TLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVP 358
T+A+ + K NYALEGSI ++G+A+QWLRD L +I+SA + E A +V+ST GVY VP
Sbjct: 291 TIAYGIDGK--VNYALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDSTEGVYVVP 348
Query: 359 AFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIK 418
AF GL P+W +ARG G+TR T K H RA LES+C+Q +DV+++M KD+ G+
Sbjct: 349 AFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVMEAMSKDS---GIDV 405
Query: 419 DAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEE 478
+ LRVDGGA NN +MQ QAD++ + V RP ETTALGAAF AGLA+G ++ ++
Sbjct: 406 QS-----LRVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLAVGFWESKD 460
Query: 479 IFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520
D + K F P ++E R+K W +AVE T
Sbjct: 461 --DIAKNWKLEEKFDPKMDEGEREKLYRGWKKAVEATQVFKT 500
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497 | Back alignment and structure |
|---|
Score = 750 bits (1938), Expect = 0.0
Identities = 240/521 (46%), Positives = 322/521 (61%), Gaps = 33/521 (6%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
M K F+ ++D+GTTS R II+D ++ G Q EF Q YP GWVEH P EI ++
Sbjct: 1 MEK----FVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQL 56
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
+ A+ A + + + AIG+TNQRETT++W K G PLYNAIVW RT+ +
Sbjct: 57 RAIKDAIQSARIEPNQI----AAIGVTNQRETTLVWDK-DGKPLYNAIVWQCRRTAEMVE 111
Query: 121 KLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIW 180
++++ T E GL YFSA KL W+++NV ++E +KG+ +FGT+DT+LI+
Sbjct: 112 EIKR---EYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIY 168
Query: 181 NLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240
LTG HVTD SNASRTML N+K LDWD LE IP +LP++ +SE+ G
Sbjct: 169 RLTGE-----HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTK 223
Query: 241 KGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLST 299
K IP+SG GDQ AA+ GQA + G K+TYGTG+FIL+NT + V+ S LL+T
Sbjct: 224 KELLGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYS-DNLLTT 282
Query: 300 LAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPA 359
+A+ L + +YALEGSI + GAAVQWLRD + II ASE EELA ++ S GVYFVPA
Sbjct: 283 IAWGLNGR--VSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPA 340
Query: 360 FNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKD 419
F GL AP+W ARG+ IGITR T + H+ARA LE++ + +DV+D M+K K
Sbjct: 341 FVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEKLVQIK----- 395
Query: 420 AKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEI 479
LRVDGGAT N+ LMQ QAD+L VIRP ETTALGAA+ AGLA+ + +
Sbjct: 396 -----ELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTR- 449
Query: 480 FDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520
+ E K F+P ++E+ R++ + W AV+R A
Sbjct: 450 -EIAELWKAERIFEPKMDEKTRERLYKGWKEAVKRAMGWAK 489
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504 | Back alignment and structure |
|---|
Score = 465 bits (1199), Expect = e-161
Identities = 112/500 (22%), Positives = 202/500 (40%), Gaps = 47/500 (9%)
Query: 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCM 63
+ + IG +D GTT+T+ ++YD + + S + + G E +P I ++V+ +
Sbjct: 2 SLKYIIG-MDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEII 60
Query: 64 AKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLE 123
K + AI ++Q + + L N+I W D S+ + +
Sbjct: 61 FDLTQKIDGK-------IAAISWSSQMHSLIGLGS-DDELLTNSITWADNCAKSIVQDAK 112
Query: 124 KELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLT 183
G G+P+ KLLW+ V +K + I ++I+ LT
Sbjct: 113 NR--GFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQK----WIGIKEYIIFRLT 166
Query: 184 GGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK-- 241
G VTD + A+ T ++NLKTL WD+ L+ L I E LPKI +++I I
Sbjct: 167 GK-----LVTDTTMAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEY 221
Query: 242 ----GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGL 296
G + I D + + +G GT I + +
Sbjct: 222 VKKLGID-SDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASY 280
Query: 297 LSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGII-SSASEIEELALQVNS-TGGV 354
A T+Y L G + G W R +L + + ++A + + +
Sbjct: 281 FCYPA------DKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNL 334
Query: 355 YFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEK 414
F+P G AP W +ARG +G+TR K +ARAV+E + F + D ++ K+ +
Sbjct: 335 IFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAASNLIKNTKK- 393
Query: 415 GVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVF 474
+ GG ++ + Q+ A++ P++ + ++ L A F A A+G+
Sbjct: 394 --PVA------INATGGFLKSDFVRQLCANIFNVPIVTMKEQQSGTLAAMFLARQALGLN 445
Query: 475 KEEEIFDSGERTKTSTTFKP 494
++ + G+ + + P
Sbjct: 446 QDLS--EIGQFAQADKVYFP 463
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489 | Back alignment and structure |
|---|
Score = 412 bits (1060), Expect = e-140
Identities = 87/517 (16%), Positives = 180/517 (34%), Gaps = 44/517 (8%)
Query: 11 AIDQGTTSTRFIIYDHQARPIGSHQVEFTQF----YPEAGWVEHEPMEILESVRVCMAKA 66
A+D G +S R ++ ++ E +F + + G+V + + ++R+ + K
Sbjct: 8 AVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKV 67
Query: 67 LDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKEL 126
+ +IG+ VL + G + + + D+RT+ + + +++
Sbjct: 68 CAAG--------IAIDSIGIDTWGVDFVLLDQQ-GQRVGLPVAYRDSRTNGLMAQAQQQ- 117
Query: 127 PGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV 186
GK + G+ + + +L + E + I + + + LTG
Sbjct: 118 -LGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAH----ALLMPDYFSYRLTGK- 171
Query: 187 NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPIT 246
+ +NA+ T L+N+ + DWD+ L G + +IG
Sbjct: 172 ----MNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNE 227
Query: 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLG 305
++ D +A++ A + GT + + + + + L + + + G
Sbjct: 228 IPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFES-QTPFTNDTALAANITNEGG 286
Query: 306 PKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFV--PAFNGL 363
A Y + +I + L++ I+ + + + + F
Sbjct: 287 --AEGRYRVLKNIMGLWLLQRVLQE--RQINDLPALIAATQALPACRFIINPNDDRFINP 342
Query: 364 FAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSE 423
A + S A +AR + +S+ DVL + + G +D
Sbjct: 343 DEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELAQLR---G--EDFSQ- 396
Query: 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKE-EEIFDS 482
L + GG N LL Q+ AD G VI +E + LG + + ++
Sbjct: 397 --LHIVGGGCQNTLLNQLCADACGIRVIAGP-VEASTLGNIGIQLMTLDELNNVDDFRQV 453
Query: 483 GERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLA 519
T TTF P N + + + +T L
Sbjct: 454 VSTTANLTTFTP--NPDSEIAHYVALIHSTRQTKELC 488
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508 | Back alignment and structure |
|---|
Score = 310 bits (796), Expect = e-100
Identities = 109/501 (21%), Positives = 184/501 (36%), Gaps = 47/501 (9%)
Query: 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMA 64
IG +D GTTST I+ + T P GW E +P + ++ R +A
Sbjct: 6 GRQVIG-LDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLA 64
Query: 65 KALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEK 124
+ A I +T VL G L +I D R +L
Sbjct: 65 ELKTTAGESDWRP----GGICVTGMLPAVVLLDDR-GAVLRPSIQQSDGRCGDEVAELRA 119
Query: 125 ELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTG 184
E+ FL G ++ KL W+ + AV AI ++ LTG
Sbjct: 120 EV--DSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIAT----VCGSYDYINMLLTG 173
Query: 185 GVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK--- 241
V D + A ++L + + + IP +P ++G +
Sbjct: 174 E-----RVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAA 228
Query: 242 ---GWPITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLL 297
G P TG+P+ G D A+ L + G+ +G I++ + + L
Sbjct: 229 ALTGLP-TGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASATAKSDPR---L 284
Query: 298 STLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI---ISSASEIEELALQVNS-TGG 353
+ P YA G +A G+A+ WL L ++ ++++ LA +V + G
Sbjct: 285 YLDYHLV----PGLYAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADG 340
Query: 354 VYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVE 413
+ +P F G P A G G++ ++ H+ RA+LE++ + + + +
Sbjct: 341 LVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHHVAVLD----D 396
Query: 414 KGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGV 473
G G T + + M I AD+L PV A+ +A+GAA+ A + G
Sbjct: 397 IGHAPQR-----FFASDGGTRSRVWMGIMADVLQRPVQLLANPLGSAVGAAWVAAIGGGD 451
Query: 474 FKEEEIFDSGERTKTSTTFKP 494
+ D +T P
Sbjct: 452 DLGWD--DVTALVRTGEKITP 470
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 2e-97
Identities = 107/494 (21%), Positives = 189/494 (38%), Gaps = 45/494 (9%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
+IG ID GT+ + I+ + Q + + + T P W E +P + ++ M
Sbjct: 2 YIG-IDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALG 60
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
D+ + +KA+G+ Q L L AI+W D R + C LE +P
Sbjct: 61 DQHSLQD------VKALGIAGQMHGATLLDAQ-QRVLRPAILWNDGRCAQECTLLEARVP 113
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G + F+A KLLW+ + + I K +L +TG
Sbjct: 114 Q----SRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDK----VLLPKDYLRLRMTGE-- 163
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKG----W 243
+D+S+A+ TM +++ DW L+ + + +P + SEI G + W
Sbjct: 164 ---FASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAW 220
Query: 244 PITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAF 302
+ +P+ GD A +G +A + GT + E + + +
Sbjct: 221 GMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVS-EGFLSKPESAVHSFCH 279
Query: 303 KLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNS-TGGVYFVPAFN 361
L P + L + A + + W G +S+ + A Q + V+F+P +
Sbjct: 280 AL----PQRWHLMSVMLSAASCLDWAAKLTG-LSNVPALIAAAQQADESAEPVWFLPYLS 334
Query: 362 GLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAK 421
G P A+GV G+T +ARAVLE + + + D +D + ++ +
Sbjct: 335 GERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSV---- 390
Query: 422 SEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIET-TALGAAFAAGLAIGVFKEEEIF 480
+ GG + Q+ AD+ G + + ALGAA A +A K
Sbjct: 391 -----TLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLI-- 443
Query: 481 DSGERTKTSTTFKP 494
+ + + P
Sbjct: 444 ELLPQLPLEQSHLP 457
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 300 bits (770), Expect = 3e-96
Identities = 100/507 (19%), Positives = 182/507 (35%), Gaps = 50/507 (9%)
Query: 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMA 64
D GTT + + D + + G VE + + ++V+
Sbjct: 4 AFYIAT-FDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIA- 61
Query: 65 KALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEK 124
+ ++ D V AI L+ Q + + + PL+ A+++ D R ++
Sbjct: 62 SSWWQSGVDARRV----SAIVLSGQMQNFLPLDQD-HEPLHRAVLYSDKRPLKEAEEINA 116
Query: 125 ELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTG 184
G + A+ P++ KL++ + +A + + +++ LTG
Sbjct: 117 RH--GADNLWSALENPMTAASILPKLVFWRASF---PQAFGRLRHVVLGAKDYVVLRLTG 171
Query: 185 GVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK--- 241
H TD +NAS T L K W L G +++P+++ E +G +
Sbjct: 172 R-----HATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAA 226
Query: 242 ---GWPITGIPISGCLGDQHAAMLGQ-ACKKGEAKSTYGT-GAFILMNTGEEVVKSKHGL 296
G+ +G P+ LGD AA LG +A GT G + + V G
Sbjct: 227 RQTGFV-SGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGT 285
Query: 297 LSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLG--IISSASEIEELALQVNST--- 351
+ LA + + AG +QW +G +E +A
Sbjct: 286 IFRLAGII----AGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTV 341
Query: 352 -GGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKD 410
G+ FVP + P RG +G+T T++A I AVLE ++ + + +
Sbjct: 342 PDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGME 401
Query: 411 AVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIET-TALGAAFAAGL 469
V L+V GG + +++ AD L ++ D G A A +
Sbjct: 402 KVGL-----------LKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAV 450
Query: 470 AIGVFK--EEEIFDSGERTKTSTTFKP 494
+ ++ + ++ R S P
Sbjct: 451 ELEWSHSIQDFLREADLREPASNILHP 477
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 4e-78
Identities = 104/527 (19%), Positives = 181/527 (34%), Gaps = 87/527 (16%)
Query: 3 KAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVC 62
FIG +D GT S R ++D Q R +G E T F P+A +VE I ++V
Sbjct: 2 SLASYFIG-VDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNA 60
Query: 63 MAKALDKATADGHNVDSGLKAIGLTNQ-------RETTVLWSKSTGCPLYNAIVWMDART 115
+ A+++A + V K +G +E L +G N IVWMD R
Sbjct: 61 VRDAVNQADINPIQV----KGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRA 116
Query: 116 SSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTID 175
+ ++ K LE VG IS KLLW+ +++ + +
Sbjct: 117 ITQAERINA----TKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGH----LFDLP 168
Query: 176 TWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP---AEILPKIVSN 232
+L W T + + WD + +G+ KI +
Sbjct: 169 DFLTWRATKD-----ETRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGAT 223
Query: 233 SEIIGKIGKGWPIT-----------GIPISGCLGDQHAAMLG----------QACKKGEA 271
+ +G G ++ G +S + D HA +G A
Sbjct: 224 VKPMGAP-LGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRI 282
Query: 272 KSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDS 331
GT + + S A P + EG + GA + + S
Sbjct: 283 ALIGGTSTAHMAMSRSAHFISGIWGPYYSAI-----LPEYWLNEGGQSATGALIDHIIQS 337
Query: 332 LGIISSASE--------------------IEELALQVNSTGGVYFVPAFNGLFAPWWRDD 371
+ E E T ++ +P F+G +P +
Sbjct: 338 HPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLTNDIHMLPYFHGNRSPRANPN 397
Query: 372 ARGVCIGITRFTSKAHIA---RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRV 428
G+ G+ T+ +A A ++++ + ++++M ++ I +
Sbjct: 398 LTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYN---IDT------MMA 448
Query: 429 DGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFK 475
GG T N + +Q A+ G ++ P + E LG+A +A GVF+
Sbjct: 449 SGGGTKNPIFVQEHANATGCAMLLPEESEAMLLGSAMMGTVAAGVFE 495
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 2e-73
Identities = 94/521 (18%), Positives = 175/521 (33%), Gaps = 91/521 (17%)
Query: 5 KEVFIGAIDQGTTSTRFIIYDHQARPI-GSHQVEFTQFYPEAGWVEHEPMEILESVRVCM 63
+ + G +D T S + + D + + Q + +P +P + +
Sbjct: 4 RTLVAG-VDTSTQSCKVRVTDAETGELVRFGQAK----HP--NGTSVDPSYWWSAFQEAA 56
Query: 64 AKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLE 123
+A + A+ + Q+ V+ G + +A++W D ++ L
Sbjct: 57 EQAGGLD---------DVSALAVGGQQHGMVILDNQ-GNVIRDAMLWNDTSSAPQAAALI 106
Query: 124 KELPG--------------GKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKK--- 166
++L GK +++AVG ++ K+ W+ EN + I
Sbjct: 107 EKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKIAAICL 166
Query: 167 -GDALFGTIDTWLIWNLTGGVNGGLH--------VTDVSNASRTMLMNLKTLDWDKPTLE 217
D WL W + G TD S+AS T+ + + ++ + +
Sbjct: 167 PHD--------WLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIA 218
Query: 218 TLG------------IPAEILPKIVSNSEIIGKIGK------GWPITGIPISGCLGDQHA 259
+ A +LP ++ + G ++ GD
Sbjct: 219 MVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVE-GGCLLAPGGGDNAM 277
Query: 260 AMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIA 319
A LG G+ + GT + E G +S A +Y
Sbjct: 278 ASLGLGMAVGDVSISLGTSGVAAAIS-ENPTYDLTGAVSGFAD-----CTGHYLPLACTI 331
Query: 320 IAGAAVQWLRDSLGIISSASEIEELALQVNS-TGGVYFVPAFNGLFAPWWRDDARGVCIG 378
+ R +LG+ E+ +LA G+ VP F+G P +A G
Sbjct: 332 NGSRILDAGRAALGV--DYDELAKLAFASKPGANGITLVPYFDGERTPNR-PNATATFSG 388
Query: 379 ITRF-TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNL 437
+T T++ ++ARA +E + +D L+ ++ I + GG +
Sbjct: 389 MTLANTTRENLARAFVEGLLCSQRDCLELIRSLGASITRI---------LLIGGGAKSEA 439
Query: 438 LMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEE 478
+ + +LG V RPA E A+GAA A + E
Sbjct: 440 IRTLAPSILGMDVTRPATDEYVAIGAARQAAWVLSGETEPP 480
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 6e-61
Identities = 69/534 (12%), Positives = 136/534 (25%), Gaps = 84/534 (15%)
Query: 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVR 60
M+ + I ID G T ++ ++D R + V + G + + +
Sbjct: 1 MSLSTGATIV-IDLGKTLSKVSLWDLDGRMLDRQ-VRPSIPLEIDGIRRLDAPDTGRWLL 58
Query: 61 VCMAKALDKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCR 120
+++ D + I + G + + + + +V
Sbjct: 59 DVLSRYADH----------PVTTIVPVGHGAGIAALTD--GRLAFPPLDYEQSIPEAVMA 106
Query: 121 KLEKELPGGKTHFLEAVGLPI--STYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWL 178
+ G P +L W+ + V +
Sbjct: 107 DYRSQRD-----PFARTGSPALPDGLNIGSQLWWLDQLHPDVMANAT-----LLPWAQYW 156
Query: 179 IWNLTGGVNGGLHVTDVSNAS-RTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG 237
W LTG V++V++ + L + + D+ P + LG IV + +G
Sbjct: 157 AWFLTG-----RAVSEVTSLGCHSDLWDPQDGDFS-PMAKRLGWA-ARFAPIVRAGDTVG 209
Query: 238 KIGKGWP-----ITGIPISGCLGDQHAAMLGQAC-----KKGEAKSTYGTGAFILMNTGE 287
+ + + L D +AA+L + GT +
Sbjct: 210 ALLPAIAERTGLSPDVQVLAGLHDSNAALLAARGFAEIADNEATVLSTGTWFIAMRLPAT 269
Query: 288 EVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRD----SLGIISSASEIEE 343
V L L + + + G ++ L + + I +
Sbjct: 270 PVD---TATLPEARDCLVNVDVHGRPVPSARFMGGREIETLIEIDTRRVDIKPDQPALLA 326
Query: 344 LALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDV 403
+V G +P F P+ R I A
Sbjct: 327 AVPEVLR-HGRMILPTLMRGFGPYP--HGRFAWINRPE--DWFERRAAACLYAALVADTA 381
Query: 404 LDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-GSPVIRPADIETTALG 462
LD + S + V+G ++ ++ A L V + G
Sbjct: 382 LDLI-------------GSTGRILVEGRFAEADVFVRALASLRPDCAVYTANAHNDVSFG 428
Query: 463 AAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKK--AESWCRAVER 514
A + E +P+ + W VE
Sbjct: 429 ALRLIDPGLRPQGELV------------RIEPLDTGSWADLDTYRNRWQAEVEA 470
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 89/589 (15%), Positives = 186/589 (31%), Gaps = 156/589 (26%)
Query: 24 YDHQARPIGSHQVEFTQFYP--EAGWVEH-EPMEILESVRVCMAKA-LDKATADGHNVDS 79
+ H G HQ ++ E +V++ + ++ + + ++K +D V
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 80 GLKAIG-LTNQRETTV--------------LWSK-STGC--PLYNAIVWMDARTS----- 116
L+ L +++E V L S T P ++++ R
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 117 ------SVCR-----KLEKEL--------------PG-GKTHFLEAVGL---PISTYFSA 147
+V R KL + L G GKT ++ +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDF 182
Query: 148 VKLLWM-MENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMN- 205
K+ W+ ++N ++ + ++ L ID N L + + R +L +
Sbjct: 183 -KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 206 -----LKTLD--WDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPITGIPISGCLGDQH 258
L L + + +IL + + + + T I + D H
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISL-----DHH 294
Query: 259 AAMLGQACKKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSI 318
+ L E KS +L+ + + L P+ +
Sbjct: 295 SMTLT----PDEVKS-------LLLK----YLDCRPQDLPREVLTTNPRR---------L 330
Query: 319 AIAGAAVQ--------WLR---DSLGIISSASEIEELALQVNSTGGVYFVPA-FNGLFAP 366
+I +++ W D L I +S + L PA + +F
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLE------------PAEYRKMF-- 375
Query: 367 WWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK--DVLDSMQKDAVEKGVIKDAKSEF 424
D + + F AHI +L + F V DV+ + K V K K
Sbjct: 376 ---DR-----LSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 425 LLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIF---- 480
+ ++ ++ ++++ L + + ++ + F + I + ++ +
Sbjct: 426 I-------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 481 ---DSGERTKTSTTFKPV-LNEEFRKKK----AESWCRAVERTFNLADL 521
+ E + T F+ V L+ F ++K + +W + L L
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Length = 270 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQ 442
T K I + S+ +V + + + + K V+ + GG N +
Sbjct: 182 TDKIDIIAGIHRSVASRVIGLAN---RVGIVKDVV----------MTGGVAQNYGVRGAL 228
Query: 443 ADLLGSPVIRPADIE-TTALGAAFAA 467
+ LG + + ALGAA A
Sbjct: 229 EEGLGVEIKTSPLAQYNGALGAALYA 254
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 100.0 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 100.0 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 100.0 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 100.0 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 100.0 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 100.0 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 100.0 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 100.0 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 100.0 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 100.0 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 100.0 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 100.0 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 100.0 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 100.0 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 100.0 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 100.0 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 100.0 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 100.0 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 100.0 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 99.76 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 98.91 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 98.74 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 98.74 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 98.49 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 98.46 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 98.45 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 98.43 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 98.38 | |
| 2yhw_A | 343 | Bifunctional UDP-N-acetylglucosamine 2-epimerase/N | 98.33 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 98.31 | |
| 3htv_A | 310 | D-allose kinase, allokinase; NP_418508.1, structur | 98.27 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 98.17 | |
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 98.17 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 98.01 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 98.01 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 97.94 | |
| 3epq_A | 302 | Putative fructokinase; SCRK, ADP binding, PSI2, MC | 97.9 | |
| 3mcp_A | 366 | Glucokinase; structural genomics, joint center for | 97.89 | |
| 2aa4_A | 289 | Mannac kinase, putative N-acetylmannosamine kinase | 97.88 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 97.86 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 97.84 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 97.74 | |
| 1woq_A | 267 | Inorganic polyphosphate/ATP-glucomannokinase; tran | 97.73 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 97.67 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 97.54 | |
| 3lm2_A | 226 | Putative kinase; structural genomics, joint center | 97.19 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 97.15 | |
| 1saz_A | 381 | Probable butyrate kinase 2; askha (acetate and sug | 97.06 | |
| 2q2r_A | 373 | Glucokinase 1, putative; ATPase hexose kinase fami | 97.01 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 97.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 96.95 | |
| 2yhx_A | 457 | Hexokinase B; transferase(phosphoryl,alcohol accep | 96.93 | |
| 1sz2_A | 332 | Glucokinase, glucose kinase; ATP-dependent, glucos | 96.9 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 96.87 | |
| 3djc_A | 266 | Type III pantothenate kinase; structural genomics, | 96.82 | |
| 1zxo_A | 291 | Conserved hypothetical protein Q8A1P1; NESG, BTR25 | 96.81 | |
| 1bdg_A | 451 | Hexokinase; phosphotransferase; HET: GLC; 2.60A {S | 96.78 | |
| 1cza_N | 917 | Hexokinase type I; structurally homologous domains | 96.6 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 96.34 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 96.29 | |
| 3o8m_A | 485 | Hexokinase; rnaseh-like fold, glycolysis, glucose | 96.2 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 96.15 | |
| 1cza_N | 917 | Hexokinase type I; structurally homologous domains | 96.03 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 96.03 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 95.95 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 95.78 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 95.73 | |
| 2h3g_X | 268 | Biosynthetic protein; pantothenate kinase, anthrax | 95.7 | |
| 3zyy_X | 631 | Iron-sulfur cluster binding protein; iron-sulfur-b | 95.66 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 95.6 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 95.58 | |
| 3vth_A | 761 | Hydrogenase maturation factor; carbamoyltransfer, | 95.37 | |
| 3qbx_A | 371 | Anhydro-N-acetylmuramic acid kinase; acetate and s | 95.33 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 95.16 | |
| 4g9i_A | 772 | Hydrogenase maturation protein HYPF; zinc finger, | 95.05 | |
| 3ttc_A | 657 | HYPF, transcriptional regulatory protein; Zn finge | 94.94 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 94.62 | |
| 3ven_A | 576 | O-carbamoyltransferase TOBZ; antibiotic biosynthes | 94.01 | |
| 3cqy_A | 370 | Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1 | 93.35 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 92.64 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 92.18 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 91.99 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 91.85 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 91.6 | |
| 3hm8_A | 445 | Hexokinase-3; glucose, glucose-6-phosphate, non-pr | 90.93 | |
| 3t69_A | 330 | Putative 2-dehydro-3-deoxygalactonokinase; structu | 90.82 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 90.58 | |
| 3nuw_A | 295 | 2-OXO-3-deoxygalactonate kinase; structural genomi | 90.49 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 90.02 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 89.3 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 87.53 | |
| 3f9m_A | 470 | Glucokinase; hexokinase IV, ATP-binding, diabetes | 86.87 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 86.75 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 86.6 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 85.49 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 84.92 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 84.5 | |
| 3cet_A | 334 | Conserved archaeal protein; Q6M145, MRR63, NESG, X | 84.42 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 82.91 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 82.69 | |
| 3sk3_A | 415 | Acetate kinase, acetokinase; actin-like ATPase dom | 81.07 | |
| 2f9w_A | 271 | Pantothenate kinase; COAA, transferase; HET: PAU; | 80.6 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 80.6 | |
| 3cj1_A | 456 | Ectonucleoside triphosphate diphosphohydrolase 2; | 80.39 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 80.26 | |
| 4ep4_A | 166 | Crossover junction endodeoxyribonuclease RUVC; res | 80.03 |
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-102 Score=836.14 Aligned_cols=494 Identities=48% Similarity=0.815 Sum_probs=451.0
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++|+||||+||||+|++|||.+|++++..+.+++..+|++||+||||++||+++++++++++++ .++++++ |.+||
T Consensus 3 kkYvlgID~GTss~Ka~l~d~~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~---~~~~~~~-I~aIg 78 (526)
T 3ezw_A 3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAK---ADISSDQ-IAAIG 78 (526)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGG-EEEEE
T ss_pred ceEEEEEEccccceeeeEEcCCCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHH---cCCChhh-EEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999987 5678889 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
|++||+++++||+++|+||+|+|+|+|.|+.++++++.+. +..+.++++||+++++.++++||+|+++|+|+++++++
T Consensus 79 is~q~~~~v~~D~~~G~pl~~ai~W~D~R~~~~~~~l~~~--~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~ 156 (526)
T 3ezw_A 79 ITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRD--GLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERAR 156 (526)
T ss_dssp EEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHT--TCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHHHH
T ss_pred EeCCCCCEEEEECCCCeEcccceecCCcchHHHHHHHHhh--ccHHHHHHHhCCCCCcccHHHHHHHHHHcCchHHHHHH
Confidence 9999999999998579999999999999999999999988 47788999999999999999999999999999999999
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCC-C
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGW-P 244 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~-l 244 (523)
+..+.+..+++||.|+|||+. .+++|+|+||+|+|||+++++|++++++.+||+.++||+++++++++|+++... +
T Consensus 157 ~~~~~~~~i~~~L~~~Lt~g~---~~~td~s~As~t~l~d~~~~~w~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~~~ 233 (526)
T 3ezw_A 157 RGELLFGTVDTWLIWKMTQGR---VHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKG 233 (526)
T ss_dssp TTCEEEECHHHHHHHHHTTTS---CCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGCCEEECSEEEEEEECTTCTT
T ss_pred HhhhhccchhHHHhhhhcCCC---ceEEEchhhccccCcCccccCcCHHHHHHcCCCHHHCCCccccccccCccchhhhc
Confidence 888888999999999999742 688999999999999999999999999999999999999999999999998653 5
Q ss_pred CCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhH
Q 009868 245 ITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGA 323 (523)
Q Consensus 245 ~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (523)
..|+||++|++|++|+++|+|+ ++|++++++|||+++.+++++.+..+..++.....+.. ..+..|.++|+++++|.
T Consensus 234 ~~gipV~~g~gD~~aa~~G~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~eg~~~~~G~ 311 (526)
T 3ezw_A 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGP--TGEVNYALEGAVFMAGA 311 (526)
T ss_dssp SCCEEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECT--TSCEEEEEEEEESCSHH
T ss_pred CCCCcEEEEcchHHHHhhhccccccceeEEEeccCeeEecccCCccccccccceeeeeecc--CCcceeeeHHHHHHHHH
Confidence 5789999999999999999999 99999999999999887776544544555554443322 24568999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHH
Q 009868 324 AVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDV 403 (523)
Q Consensus 324 ~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~ 403 (523)
+++||++.++......+.+..+...++++|++|+|||+|+|+|+|||++||+|+||+..|+++||+||++|||||++|++
T Consensus 312 ~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~~~~~i~RAvlEgia~~~r~~ 391 (526)
T 3ezw_A 312 SIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDV 391 (526)
T ss_dssp HHHHHHHTSCCCCSSSCHHHHHTTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHhccCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999886544444555666668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcc
Q 009868 404 LDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSG 483 (523)
Q Consensus 404 l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~ 483 (523)
++.|++..|.+ +++|+++||++||++|+||+||+||+||++++..|++|+|||++|++|+|.|+|++++.+.
T Consensus 392 le~l~~~~g~~--------~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~~~E~~alGAA~lA~~a~G~~~~~~e~~~~ 463 (526)
T 3ezw_A 392 LEAMQADSGIR--------LHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEK 463 (526)
T ss_dssp HHHHHHHHCCC--------CSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHHTTSSSCGGGSTTC
T ss_pred HHHHHHhcCCC--------CCEEEEECchhhCHHHHHHHHHHHCCEEEeCCCCchHHHHHHHHHHHHhCCCCCHHHHHHh
Confidence 99998877888 9999999999999999999999999999999999999999999999999999999998544
Q ss_pred cCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchhc
Q 009868 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520 (523)
Q Consensus 484 ~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~~ 520 (523)
+ +..++|+|+++++++|++|++|++++++.++|.+
T Consensus 464 ~--~~~~~~~P~~~~~~~~~~y~~w~~av~r~~~w~~ 498 (526)
T 3ezw_A 464 A--VIEREFRPGIETTERNYRYAGWKKAVKRAMAWEE 498 (526)
T ss_dssp C--CEEEEECCCSCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred c--CCCeEEcCCCCHHHHHHHHHHHHHHHHHHhCchH
Confidence 3 3678999999999999999999999999998843
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-101 Score=827.94 Aligned_cols=495 Identities=47% Similarity=0.775 Sum_probs=448.3
Q ss_pred CcccCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Q 009868 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSG 80 (523)
Q Consensus 1 m~~~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (523)
|.+||++|+||||+|||++|++|+|.+|+++++.+.+++..+|.+||+||||++||+++++++++++++ .++++.+
T Consensus 20 ~~~MM~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~---~~~~~~~- 95 (520)
T 4e1j_A 20 FQSMMGGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEK---SGITAND- 95 (520)
T ss_dssp CCCCCSCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---TTCCGGG-
T ss_pred HHHHhhCeEEEEEeCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCccc-
Confidence 456777899999999999999999999999999999999899999999999999999999999999876 5666778
Q ss_pred ceEEEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHH
Q 009868 81 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAV 160 (523)
Q Consensus 81 I~aIgis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~ 160 (523)
|.+|||++|++++++||+++|+|++|+|.|+|.|+.++++++.+. +..++++++||+++++.++++||+|+++|+||+
T Consensus 96 I~~Igis~~g~~~v~~D~~~G~~l~~~i~W~D~R~~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~ 173 (520)
T 4e1j_A 96 IAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKK--GLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGA 173 (520)
T ss_dssp EEEEEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHT--TCHHHHHHHHSSCSSTTSHHHHHHHHHHHSTTH
T ss_pred EEEEEEeCCcceEEEEECCCCeECccccccccCCHHHHHHHHHhc--ccHHHHHHHHCCCCCchhHHHHHHHHHHcChHH
Confidence 999999999999999995489999999999999999999999987 367889999999999999999999999999999
Q ss_pred HHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccc
Q 009868 161 KEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~ 240 (523)
|+++++++++|++++|||.|+|||+. .+++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+++
T Consensus 174 ~~~~~~~~~~~~~~~dyl~~~LTG~~---~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~ 250 (520)
T 4e1j_A 174 QVRAAKGELCFGTIDTFLIWRLTGGE---CFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTD 250 (520)
T ss_dssp HHHHHTTCEEEEEHHHHHHHHHTTTC---CCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGSCEEECSBSCCCBCC
T ss_pred HHHHhcCCeEecCHHHHHHHHhcCCC---eeeecHHHhhhhcccccccCCCCHHHHHHcCCCHHHCCceecCCCceeeeC
Confidence 99998777788899999999999931 389999999999999999999999999999999999999999999999997
Q ss_pred cCCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchh
Q 009868 241 KGWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIA 319 (523)
Q Consensus 241 ~~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (523)
...|++|+||++|++|++|+++|+|+ ++|++++++|||+++.+++.++|..++.+++..++|..+ .++.|.++++++
T Consensus 251 ~~~l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~ 328 (520)
T 4e1j_A 251 PSLFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLD--GETTYALEGSIF 328 (520)
T ss_dssp HHHHTSCCBEEEECCHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTCCCCCSSSCEEEEEEEET--TEEEEEEEEEES
T ss_pred hhhCCCCCeEEEECCcHHHHHHhCCCCCCCcEEEEecCchheEEecCCccccCCCceeeEEeEecC--CCceEEEcchHh
Confidence 53267899999999999999999999 999999999999988777755666666787777777652 234799999999
Q ss_pred chhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhH
Q 009868 320 IAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQ 399 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~ 399 (523)
++|.+++|+++.++...+|++++++++++|+++|++|+|||+|+|+|+|||++||+|+||+..|+++||+||++|||||+
T Consensus 329 ~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~ 408 (520)
T 4e1j_A 329 VAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQ 408 (520)
T ss_dssp CSHHHHHHHHHTTCCC-----CHHHHHTSCTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCcccHHHHHHHHhcCCCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988766788999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh---hccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCC
Q 009868 400 VKDVLDSMQKD---AVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKE 476 (523)
Q Consensus 400 ~r~~l~~l~~~---~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~ 476 (523)
+|++++.|++. .| + +++|+++||++||++|+||+||+||+||++++..|++|+|||++|++++|.|+|
T Consensus 409 ~r~~l~~l~~~~~~~g-~--------~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a~G~~~~ 479 (520)
T 4e1j_A 409 TRDLLEAMHKDWRRNG-N--------DTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPN 479 (520)
T ss_dssp HHHHHHHHHHHCC--------------CCEEEESGGGGCHHHHHHHHHHHTSCEEEESCCCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHhhccCC-C--------cceEEEeCccccCHHHHHHHHHHhCCeEEecCCCccHHHHHHHHHHHHcCCcCC
Confidence 99999999875 46 7 899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcccCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhc
Q 009868 477 EEIFDSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFN 517 (523)
Q Consensus 477 ~~~a~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~ 517 (523)
++++. +++ +..++|+|+++++++.++|++|+++++++++
T Consensus 480 ~~~~~-~~~-~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~ 518 (520)
T 4e1j_A 480 QEAFA-KSW-ARDRRFEPHMDEATRKVKLKGWRSAVKRTLI 518 (520)
T ss_dssp HHHHH-HTC-CEEEEECCCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-hhc-CCCeEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99984 554 5678999999988877899999999999874
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-100 Score=819.71 Aligned_cols=496 Identities=47% Similarity=0.824 Sum_probs=455.3
Q ss_pred ccCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCce
Q 009868 3 KAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLK 82 (523)
Q Consensus 3 ~~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~ 82 (523)
|.|++|+||||+|||++|++|+|.+|+++++.+.+++..+|.+||+||||++||+++++++++++++ .++++++ |.
T Consensus 2 ~aM~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~~~~-I~ 77 (501)
T 3g25_A 2 NAMEKYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINE---NDVRADQ-IA 77 (501)
T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---TTCCGGG-EE
T ss_pred cccccEEEEEEeCccceEEEEEcCCCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCccc-EE
Confidence 4456799999999999999999999999999999999999999999999999999999999999876 5667788 99
Q ss_pred EEEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHH
Q 009868 83 AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKE 162 (523)
Q Consensus 83 aIgis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~ 162 (523)
+|||++|++++++||+++|+|++|+|+|+|.|+.++++++.+. +..++++++||+++++.++++||+|+++|+||+|+
T Consensus 78 ~Igis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~ 155 (501)
T 3g25_A 78 GIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQQ--GYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGARE 155 (501)
T ss_dssp EEEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHT--TCHHHHHHHHSCCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred EEEEECCcCcEEEEECCCCeECCCceeeccCChHHHHHHHHhc--cCHHHHHHHHCCCCCchhHHHHHHHHHHhCHHHHH
Confidence 9999999999999999449999999999999999999999987 36788999999999999999999999999999999
Q ss_pred HHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccC
Q 009868 163 AIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKG 242 (523)
Q Consensus 163 ~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~ 242 (523)
+++++.++|++++|||.|+|||+. ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+++..
T Consensus 156 ~~~~~~~l~~~~~dyl~~~LTG~~---~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~ 232 (501)
T 3g25_A 156 KAENGDLLFGTIDTWLVWKLSGKA---AHITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKASSEVYGKTIDY 232 (501)
T ss_dssp HHHTTCEEEEEHHHHHHHHHTTTS---CCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGCCEEECSEEEEEECCGG
T ss_pred HHhcCCeEEecHHHHHHHHhcCCC---eeeeeHHHhhcccCeeCCCCCCCHHHHHHhCcCHHHCCceecCCCceeccchH
Confidence 999877889999999999999941 58899999999999999999999999999999999999999999999999753
Q ss_pred C-CCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhc
Q 009868 243 W-PITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAI 320 (523)
Q Consensus 243 ~-l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
. +.+|+||++|++|++|+++|+|+ ++|++++++|||+++.+++++.|..++.+++..++|.++ .+..|.+++++++
T Consensus 233 ~~~g~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~ 310 (501)
T 3g25_A 233 HFYGQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAVKSESGLLTTIAYGID--GKVNYALEGSIFV 310 (501)
T ss_dssp GTTTCCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEET--TEEEEEEEEEESC
T ss_pred HhCCCCCeEEEECccHHHHHHhCCCCCCCcEEEEccchhheeeecCCccccCCCCeEEEeeEecC--CccEEEEeccccc
Confidence 2 45799999999999999999999 999999999999988777765666666777777777642 1237999999999
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQV 400 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~ 400 (523)
+|.+++|+++.++...+|++++++++++|..++++|+|||.|+|+|+|||++||+|+||+..|+++||+||++|||||++
T Consensus 311 ~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~ 390 (501)
T 3g25_A 311 SGSAIQWLRDGLRMINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQT 390 (501)
T ss_dssp STHHHHHHHHTSCCCSSGGGHHHHHTTSSCCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHhhCCCCCeEEEecccccCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999876667999999998887779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHH
Q 009868 401 KDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIF 480 (523)
Q Consensus 401 r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a 480 (523)
|++++.|++..|.+ +++|+++||++||++|+|++||++|+||++++..|++|+|||++|++++|.|+|++++
T Consensus 391 ~~~~~~l~~~~g~~--------~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~la~~a~G~~~~~~~~ 462 (501)
T 3g25_A 391 RDVMEAMSKDSGID--------VQSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLAVGFWESKDDI 462 (501)
T ss_dssp HHHHHHHHHHSSCC--------CSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHHTTSSSCTHHH
T ss_pred HHHHHHHHHhcCCC--------CcEEEEecchhcCHHHHHHHHHHhCCceEecCCCcchHHHHHHHHHHHhCccCCHHHH
Confidence 99999998766887 8999999999999999999999999999999999999999999999999999999987
Q ss_pred hcccCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchh
Q 009868 481 DSGERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLA 519 (523)
Q Consensus 481 ~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~ 519 (523)
++++ +..++|+|+++.+++.++|++|+++++++++|.
T Consensus 463 -~~~~-~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~ 499 (501)
T 3g25_A 463 -AKNW-KLEEKFDPKMDEGEREKLYRGWKKAVEATQVFK 499 (501)
T ss_dssp -HHHC-CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -HHhc-cCCeEECCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 5554 567899999998877789999999999999884
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-100 Score=818.75 Aligned_cols=492 Identities=47% Similarity=0.791 Sum_probs=453.3
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++|+||||+|||++|++|+|.+|+++++.+.+++..+|.+||+||||++||+++++++++++++ .++++.+ |.+||
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~---~~~~~~~-I~~Ig 79 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEA-IAGIG 79 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGG-EEEEE
T ss_pred CCEEEEEEcCCCceEEEEECCCCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHH---cCCChhh-eEEEE
Confidence 3589999999999999999999999999999999999999999999999999999999999887 4566778 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
|++|++++++||+++|+|++|+|+|+|.|+.++++++.+. +..++++++||+++++.++++||+|+++|+||+|++++
T Consensus 80 is~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 157 (506)
T 3h3n_X 80 ITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVD--GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKAD 157 (506)
T ss_dssp EEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHT--TCHHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHHHHH
T ss_pred eeCCcccEEEEeCCCCeECCCceEecCcchHHHHHHHHhc--cCHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHHHHh
Confidence 9999999999998449999999999999999999999987 36788999999999999999999999999999999999
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCC-C
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGW-P 244 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~-l 244 (523)
+++++|++++|||.|+|||+. ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+++..+ +
T Consensus 158 ~~~~~~~~~~dyl~~~LTG~~---~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~~l 234 (506)
T 3h3n_X 158 NGELLFGTIDSWLVWKLTDGQ---VHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFY 234 (506)
T ss_dssp TTCEEEECHHHHHHHHHTTTS---CCEEEHHHHHTTTSEETTTTEECHHHHHHTTCCGGGCCEEECSEEEEEECCGGGTT
T ss_pred cCCeEEecHHHHHHHHhcCCc---eeeeEHHHhhhhhCeecCCCCcCHHHHHHcCcCHHHCCceecCCCcceeeChHHhc
Confidence 877889999999999999941 479999999999999999999999999999999999999999999999998653 4
Q ss_pred CCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhH
Q 009868 245 ITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGA 323 (523)
Q Consensus 245 ~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (523)
.+|+||++|++|++|+++|+|+ ++|++++++|||+++.+++++.|+.++.+++..++|.++ .+..|.++++++++|.
T Consensus 235 g~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~g~~~~~G~ 312 (506)
T 3h3n_X 235 GSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGIN--GKVYYALEGSIFVAGS 312 (506)
T ss_dssp TCCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEETCCCSCCTTSEEEEEEEET--TEEEEEEEEEECCSSH
T ss_pred CCCCeEEEECCcHHHHHHhCCCCCCCcEEEEecchheeeeecCCccccCCCceEEEeeeecC--CCCEEEEecchhhHHH
Confidence 4799999999999999999999 999999999999987777655566666777777777652 1347999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHH
Q 009868 324 AVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDV 403 (523)
Q Consensus 324 ~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~ 403 (523)
+++|+++.++...+|++++++++++|..+|++|+|||+|+|+|+|||++||+|+|++..|+++||+||++|||||++|++
T Consensus 313 ~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~ 392 (506)
T 3h3n_X 313 AIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDV 392 (506)
T ss_dssp HHHHHHHTSCCCSSTTHHHHHHTTCCSCSCCEEECCTTCBCTTTCBTTCCCEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHhcCCCCCceEEeccccCCCCCccCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999887667899999998887779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcc
Q 009868 404 LDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSG 483 (523)
Q Consensus 404 l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~ 483 (523)
++.|++..|.+ +++|+++||++||++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++ .+
T Consensus 393 ~~~l~~~~g~~--------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~-~~ 463 (506)
T 3h3n_X 393 IDTMKKDSGID--------IPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDEL-KS 463 (506)
T ss_dssp HHHHHHHHCSC--------CCEEEEESGGGGCHHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHHTTSSCSHHHH-HT
T ss_pred HHHHHHhcCCC--------CCEEEEecccccCHHHHHHHHHHhCCeEEecCCCcchhHHHHHHHHHHhCccCCHHHH-HH
Confidence 99998766887 8999999999999999999999999999999999999999999999999999999998 55
Q ss_pred cCCCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhch
Q 009868 484 ERTKTSTTFKPVLNEEFRKKKAESWCRAVERTFNL 518 (523)
Q Consensus 484 ~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~ 518 (523)
++ +..++|+|+++.+++.++|++|+++++++++|
T Consensus 464 ~~-~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~ 497 (506)
T 3h3n_X 464 MA-EEGQMFTPEMPAEERDNLYEGWKQAVAATQTF 497 (506)
T ss_dssp TC-CCCCEECCCSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hc-CCCeEECCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 54 57889999999877778999999999999988
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-99 Score=812.67 Aligned_cols=483 Identities=22% Similarity=0.281 Sum_probs=435.2
Q ss_pred CcccCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Q 009868 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSG 80 (523)
Q Consensus 1 m~~~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (523)
|..+.++|+||||+|||++|++|+|.+|+++++.+.+++..+|.+||+||||++||+++++++++++++ .++++.+
T Consensus 1 ~~~~~~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~---~~~~~~~- 76 (508)
T 3ifr_A 1 MSLAQGRQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTT---AGESDWR- 76 (508)
T ss_dssp ------CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HCGGGCC-
T ss_pred CCcccCCEEEEEEecCcceEEEEECCCCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHh---cCCChhh-
Confidence 666667899999999999999999999999999999999999999999999999999999999999876 3555678
Q ss_pred ceEEEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHH
Q 009868 81 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAV 160 (523)
Q Consensus 81 I~aIgis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~ 160 (523)
|.+|||++|++++++||+ +|+|++|+|+|+|.|+.++++++.+.. +.++++++||+++++.++++||+|+++|+||+
T Consensus 77 I~~Igis~~~~~~v~~D~-~G~~l~~~i~W~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~ 153 (508)
T 3ifr_A 77 PGGICVTGMLPAVVLLDD-RGAVLRPSIQQSDGRCGDEVAELRAEV--DSEAFLARTGNGVTQQLVTAKLRWIERHEPAV 153 (508)
T ss_dssp EEEEEEEECSSCBEEECT-TSCBCSCEECTTCCCCHHHHHHHHHHS--CHHHHHHHHSSCSSTTSHHHHHHHHHHHCHHH
T ss_pred eEEEEEECCCCcEEEECC-CCCCcccceeccccChHHHHHHHHhhc--cHHHHHHHHCCCCChhhHHHHHHHHHHcCHHH
Confidence 999999999999999998 799999999999999999999999985 67789999999999999999999999999999
Q ss_pred HHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccc
Q 009868 161 KEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIG 240 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~ 240 (523)
|+++++ |+.++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+++
T Consensus 154 ~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~ 224 (508)
T 3ifr_A 154 FGAIAT----VCGSYDYINMLLTG-----ERVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVT 224 (508)
T ss_dssp HHTCSE----EECHHHHHHHHHHC-----CCCEEHHHHHHHTCEETTTTEECHHHHHTTTSCGGGSCCEECTTSEEEECC
T ss_pred HHHHhh----hcCchHHHHHHhcC-----CccccHhHhhcccCccCccCCCCHHHHHHcCCCHHHCCCCcCCCCeeeccC
Confidence 999875 88899999999999 889999999999999999999999999999999999999999999999997
Q ss_pred c------CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeE
Q 009868 241 K------GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYA 313 (523)
Q Consensus 241 ~------~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (523)
. | |++|+||++|++|++|+++|+|+ ++|++++++|||+++.++++ +|..++. +..+++. .|+.|.
T Consensus 225 ~~~a~~~G-l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~--~~~~~~~----~~g~~~ 296 (508)
T 3ifr_A 225 AEAAALTG-LPTGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASA-TAKSDPR--LYLDYHL----VPGLYA 296 (508)
T ss_dssp HHHHHHHC-CCTTCEEECCEEHHHHHHHHTTCCSTTEEEEEESSSEEEEECBS-CCCCBTT--BBCCBCS----STTCBC
T ss_pred HHHHHHhC-CCCCCeEEEECchHHHHHHhCCCCCCCcEEEEechhhhheeeCC-CcccCCC--cceeeee----cCCceE
Confidence 4 6 88999999999999999999999 99999999999999877665 4555543 3344432 478899
Q ss_pred eccchhchhHHHHHHHHHcCCC-C--CHHHHHHHHHhc-CCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHH
Q 009868 314 LEGSIAIAGAAVQWLRDSLGII-S--SASEIEELALQV-NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIA 389 (523)
Q Consensus 314 ~~~~~~~~G~~l~w~~~~~~~~-~--~~~~l~~~a~~~-~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~ 389 (523)
++++++++|.+++|+++.+... . +|+++++++++. ++++|++|+|||+|+|+|+|||++||+|+|++..|+++||+
T Consensus 297 ~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~ 376 (508)
T 3ifr_A 297 PNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHLW 376 (508)
T ss_dssp CEEEESSSHHHHHHHHHHHSTTCTTHHHHHHHHHHHTSCTTGGGCEEECCTTCCC----CCCCCCEEESCCTTCCHHHHH
T ss_pred EechhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHhcCCCCCCCeEEecCCCCCCCCCCCCCcCEEEECCCCCCCHHHHH
Confidence 9999999999999999988421 2 589999998876 58999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHH
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGL 469 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~ 469 (523)
||++|||||++|++++.|++ .|.+ +++|+++||++||++|+|++||++|+||++++..|++|+|||++|++
T Consensus 377 rAvlEgia~~~~~~~~~l~~-~g~~--------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~ 447 (508)
T 3ifr_A 377 RALLEAVALAFRHHVAVLDD-IGHA--------PQRFFASDGGTRSRVWMGIMADVLQRPVQLLANPLGSAVGAAWVAAI 447 (508)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTCC--------CCEEEEESGGGGCHHHHHHHHHHHTSCEEEEECCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCC--------CCEEEEeCCcccCHHHHHHHHHHhCCeEEecCCCCchHHHHHHHHHH
Confidence 99999999999999999986 4877 89999999999999999999999999999999899999999999999
Q ss_pred hccccCChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 470 AIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 470 ~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
++|.|+|++++ .+++ +..++|+|++++++.| ++|++|++++++++..
T Consensus 448 a~G~~~~~~~~-~~~~-~~~~~~~P~~~~~~~y~~~y~~~~~~~~~~~~~ 495 (508)
T 3ifr_A 448 GGGDDLGWDDV-TALV-RTGEKITPDPAKAEVYDRLYRDFSALYATLHPF 495 (508)
T ss_dssp HTCSSCCGGGG-GGGS-EEEEEECCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHH-Hhhc-CCCeEECcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 4555 5778999999988776 6799999999998864
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-99 Score=806.29 Aligned_cols=477 Identities=23% Similarity=0.366 Sum_probs=436.0
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
+++|+||||+|||++|++|+|.+|+++++.+.+++..+|.+||+||||++||+++++++++++++ .+ .+ |.+|
T Consensus 2 ~m~~~lgIDiGtts~K~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~---~~---~~-I~~I 74 (504)
T 3ll3_A 2 SLKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQK---ID---GK-IAAI 74 (504)
T ss_dssp CCEEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---CS---SE-EEEE
T ss_pred CCCEEEEEEecCCceEEEEEcCCCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHh---CC---CC-eEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999876 22 57 9999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAI 164 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 164 (523)
||++||+++++||+ +|+||+|+|+|+|.|+.++++++.+.. +.++++++||+++++.++++||+|+++|+||+|+++
T Consensus 75 gis~q~~~~v~~D~-~G~pl~~~i~W~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 151 (504)
T 3ll3_A 75 SWSSQMHSLIGLGS-DDELLTNSITWADNCAKSIVQDAKNRG--FAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQA 151 (504)
T ss_dssp EEEECSSCBEEECT-TSCBSSCEECTTCCTTHHHHHHHHHHT--HHHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHHHHC
T ss_pred EEECCCCcEEEECC-CCCCcccceeCCccCHHHHHHHHHhcc--CHHHHHHHHCCCCCcccHHHHHHHHHHcChHHHHHH
Confidence 99999999999998 899999999999999999999999884 568899999999999999999999999999999998
Q ss_pred hcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc---
Q 009868 165 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK--- 241 (523)
Q Consensus 165 ~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~--- 241 (523)
++ |++++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+++.
T Consensus 152 ~~----~~~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~~~~a 222 (504)
T 3ll3_A 152 QK----WIGIKEYIIFRLTG-----KLVTDTTMAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEYV 222 (504)
T ss_dssp CE----EECHHHHHHHHHHS-----CCEEEHHHHTTTTCBCTTTSSBCHHHHHHHTCCGGGSCEEECTTCEECCCCHHHH
T ss_pred hh----eeCHHHHHHHHHhC-----CcccchhHhhcccCeeCCCCCcCHHHHHHcCCCHHHCCCeeCCcceeeccCHHHH
Confidence 75 99999999999999 8999999999999999999999999999999999999999999999999974
Q ss_pred ---CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccc
Q 009868 242 ---GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGS 317 (523)
Q Consensus 242 ---~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (523)
| |++|+||++|++|++|+++|+|+ ++|++++++|||+++.++++ +|..++.+.+ ++|.+ .++.|.++++
T Consensus 223 ~~~G-l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~--~~~~~---~~~~~~~~g~ 295 (504)
T 3ll3_A 223 KKLG-IDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVD-QPKIDPSASY--FCYPA---DKTHYLLGGP 295 (504)
T ss_dssp HHHT-CCTTCEEEEEEEHHHHHHHTTTCCSTTEEEEEESSSEEEEEEES-SCCCCTTCCS--EEEEE---ETTEEEEEEE
T ss_pred HhcC-CCcCCCEEEEccHHHHHHHhCCCCCCCcEEEEechhhhheeeCC-CcccCCCCce--EEEEe---CCCeEEEEee
Confidence 5 88999999999999999999999 99999999999999877764 5666655554 44543 2568999999
Q ss_pred hhchhHHHHHHHHHcCCC-CCHHHHHHHHHhcC-CCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhh
Q 009868 318 IAIAGAAVQWLRDSLGII-SSASEIEELALQVN-STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLES 395 (523)
Q Consensus 318 ~~~~G~~l~w~~~~~~~~-~~~~~l~~~a~~~~-~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Eg 395 (523)
++++|.+++|+++.++.. ..++++.++++++| +++|++|+|||+|+|+|+|||++||+|+||+..|+++||+||++||
T Consensus 296 ~~~~G~~~~W~~~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEg 375 (504)
T 3ll3_A 296 VNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMARAVIEG 375 (504)
T ss_dssp ESCSHHHHHHHHHHHTCTTCCHHHHHHHHHTSCTTGGGCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccchhHHHHHHHHHhcCCCCCCCeEEecCccCCCCCCCCCccCeEEECCCCCCCHHHHHHHHHHH
Confidence 999999999999988643 23455555777774 7899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccC
Q 009868 396 MCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFK 475 (523)
Q Consensus 396 ia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~ 475 (523)
|||++|++++.|++. +.+ +++|+++||++||++|+||+||++|+||++++..|++|+|||++|++++|.|+
T Consensus 376 ia~~~r~~~~~l~~~-g~~--------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~ 446 (504)
T 3ll3_A 376 IIFNLYDAASNLIKN-TKK--------PVAINATGGFLKSDFVRQLCANIFNVPIVTMKEQQSGTLAAMFLARQALGLNQ 446 (504)
T ss_dssp HHHHHHHHHHHHHTT-SCC--------CSEEEEESGGGCSHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHc-CCC--------CCEEEEeCchhcCHHHHHHHHHhhCCeEEecCCCCchhHHHHHHHHHHcCccC
Confidence 999999999999874 666 89999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 476 EEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
|++++ ++++ +..++|+|++++++.| ++|++|+++|++++++
T Consensus 447 ~~~~~-~~~~-~~~~~~~P~~~~~~~Y~~~y~~y~~l~~~l~~~ 488 (504)
T 3ll3_A 447 DLSEI-GQFA-QADKVYFPNPKEAATYQKLFPLYCEIRNALAAS 488 (504)
T ss_dssp SGGGG-GGTS-CEEEEECCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHH-HHhc-CCCeEEccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99886 6665 5778999999988877 6799999999998874
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-98 Score=806.41 Aligned_cols=479 Identities=22% Similarity=0.293 Sum_probs=438.1
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
|+|+||||+|||++|++|+|.+|+++++.+.+++..+|.+||+||||++||+++++++++++ + .++++.+ |.+||
T Consensus 4 m~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~---~~~~~~~-I~~Ig 78 (511)
T 3hz6_A 4 AFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-Q---SGVDARR-VSAIV 78 (511)
T ss_dssp CCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-T---TTCCGGG-EEEEE
T ss_pred ccEEEEEEeCCCceEEEEECCCCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-h---cCCChhH-eEEEE
Confidence 56999999999999999999999999999999999999999999999999999999999998 5 4566788 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
|++|++++++||+ +|+|++|+|+|+|.|+.++++++.+.. +.++++++||+++++.++++||+|+++|+||+|++++
T Consensus 79 is~q~~~~v~~D~-~G~pl~~~i~W~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 155 (511)
T 3hz6_A 79 LSGQMQNFLPLDQ-DHEPLHRAVLYSDKRPLKEAEEINARH--GADNLWSALENPMTAASILPKLVFWRASFPQAFGRLR 155 (511)
T ss_dssp EEECCSCBEEECT-TSCBSSCEECTTCCCCHHHHHHHHHHH--CHHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTTCC
T ss_pred EecccccEEEECC-CcCCCcCceecCCCCHHHHHHHHHhcc--CHHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHHHH
Confidence 9999999999998 899999999999999999999999885 5788999999999999999999999999999999987
Q ss_pred cCCceeeC-hhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc---
Q 009868 166 KGDALFGT-IDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK--- 241 (523)
Q Consensus 166 ~~~~~~~~-~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~--- 241 (523)
+ |++ ++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+++.
T Consensus 156 ~----~l~~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~~~~a 226 (511)
T 3hz6_A 156 H----VVLGAKDYVVLRLTG-----RHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAA 226 (511)
T ss_dssp E----EECSHHHHHHHHHHS-----CCEECHHHHHHTTCEETTTTEECHHHHHHTTCCGGGSCEECCTTSEEEECCHHHH
T ss_pred H----HhcCcHHHHHHHHhC-----CceeeHhHhhcccceeCCCCCcCHHHHHHhCCCHHHCCCCcCCCCcccccCHHHH
Confidence 5 999 99999999999 8999999999999999999999999999999999999999999999999974
Q ss_pred ---CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCcccccc-CCCceeeeeeecCCCCCceeEecc
Q 009868 242 ---GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKS-KHGLLSTLAFKLGPKAPTNYALEG 316 (523)
Q Consensus 242 ---~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 316 (523)
| |++|+||++|++|++|+++|+|+ ++|++++++|||+++.++++.+|..+ +.+.+..+++. .++.|.+.+
T Consensus 227 ~~~G-l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g 301 (511)
T 3hz6_A 227 RQTG-FVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGI----IAGKTLQVA 301 (511)
T ss_dssp HHHC-CCTTCEEECCEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEECCCCCSCCSSCCEEECSS----STTEEEEEE
T ss_pred HhhC-CCCCCeEEEECchHHHHHHhCCCCCCCcEEEEecchhhheeecCCeecccCCCCceEEEEEe----cCCceEEEe
Confidence 5 88999999999999999999999 99999999999999877664256766 66666566653 356666668
Q ss_pred chhchhHHHHHHHHHcC--CCCCHHHHHHHHHhc-CC---CCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHH
Q 009868 317 SIAIAGAAVQWLRDSLG--IISSASEIEELALQV-NS---TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIAR 390 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~--~~~~~~~l~~~a~~~-~~---~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~r 390 (523)
+++++|.+++|+++.++ ...+|+++++++++. |+ ++|++|+|||+|+|+|+||+++||+|+||+..|+++||+|
T Consensus 302 ~~~~~G~~~~W~~~~~~~~~~~~~~~l~~~a~~~~~g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~R 381 (511)
T 3hz6_A 302 PVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILL 381 (511)
T ss_dssp EESSSHHHHHHHGGGGTCCTTSCSHHHHHHHHHHHTTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCTTCCHHHHHH
T ss_pred ehhhHHHHHHHHHHHhcccccccHHHHHHHHHhCCCCCCCCCCEEEeCCCCCCCCCCCCCccceEEEcCCCCCCHHHHHH
Confidence 99999999999999987 555799999999886 68 8999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCce-eecCCCCccHHHHHHHHHH
Q 009868 391 AVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPV-IRPADIETTALGAAFAAGL 469 (523)
Q Consensus 391 Av~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv-~~~~~~e~~alGaA~lA~~ 469 (523)
|++|||||++|++++.|++ |. +++|+++||++||++|+|++||++|+|| ++++..|++|+|||++|++
T Consensus 382 AvlEgia~~~~~~~~~l~~--g~---------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~alGaA~lA~~ 450 (511)
T 3hz6_A 382 AVLEGAALSLRWCAELLGM--EK---------VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAV 450 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTG--GG---------CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CC---------CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecCCCCchHHHHHHHHHH
Confidence 9999999999999999976 43 4789999999999999999999999999 9988999999999999999
Q ss_pred hccccCChhHHhccc---CCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 470 AIGVFKEEEIFDSGE---RTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 470 ~~G~~~~~~~a~~~~---~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
++|.|+|++++++++ + +..++|+|++++++.| ++|++|+++|+.++..
T Consensus 451 a~G~~~~~~~~~~~~~~~~-~~~~~~~P~~~~~~~y~~~y~~~~~~~~~l~~~ 502 (511)
T 3hz6_A 451 ELEWSHSIQDFLREADLRE-PASNILHPQPCDEGRRRRKFERFKQCVETLGRL 502 (511)
T ss_dssp HTTSCSCHHHHHHHHHTC----CCCBCCCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred HhCCcCCHHHHHHHhhccC-CCCeEECcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999997766776 5 4678999999988776 6799999999998754
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-97 Score=793.06 Aligned_cols=494 Identities=40% Similarity=0.692 Sum_probs=447.4
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
|+|+||||+|||++|++|+|.+|+++.+.+.+++..+|.+||.||||++||+++++++++++++.. .++++.+ |.+||
T Consensus 3 m~~~lgIDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~-~~~~~~~-i~~Ig 80 (503)
T 2w40_A 3 MNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLK-DKYTSVI-IKCIG 80 (503)
T ss_dssp CEEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHH-HHSSSCE-EEEEE
T ss_pred ccEEEEEEeCCcceEEEEECCCCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhh-cCCCccc-eEEEE
Confidence 368999999999999999999999999999999988999999999999999999999999987620 0344568 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
|++|++++++||+++|+|++|+|.|+|.|+.++++++.+. +..++++++||+++++.++++||+|+++|+||+|++++
T Consensus 81 is~~~~~~~~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 158 (503)
T 2w40_A 81 ITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAK--YNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKID 158 (503)
T ss_dssp EEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHH--SCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHHHHHHHH
T ss_pred EcCCcceEEEEECCCCcCCccceeecccCcHHHHHHHHhc--cchHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHh
Confidence 9999999999998459999999999999999999999987 35678999999999999999999999999999999999
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCC-CCCCCCcccCCccccccccCCC
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEILPKIVSNSEIIGKIGKGWP 244 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~~~LP~i~~~~~~~G~v~~~~l 244 (523)
+++++|++++|||.|+|||+ ++++|+|+||+|++||+++++||+++|+.+||+ .++||+|+++++++|+++...+
T Consensus 159 ~~~~~~~~~~d~l~~~LTG~----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~~lP~i~~~~~~~G~~~~~~~ 234 (503)
T 2w40_A 159 DGTAVIGNINTWLIFNLTKG----NCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHV 234 (503)
T ss_dssp TTCEEEEEHHHHHHHHHHTS----CCEEEHHHHTTTTCBCTTTCSBCHHHHHHTTCCCGGGSCEEECSEEEEEECCCTTS
T ss_pred cCCeEEECHHHHHHHHHcCC----CccccHHHhhhhcCccCCCCccCHHHHHHcCCChHHHCCCccCCcCceeeccHHHc
Confidence 88888999999999999993 499999999999999999999999999999999 9999999999999999986522
Q ss_pred CC--CCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhch
Q 009868 245 IT--GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIA 321 (523)
Q Consensus 245 ~~--g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (523)
.+ |+||++|++|++|+++|+|+ ++|++++++|||+++.+++++.|..++.+.+..++|..+...++.|.++++++++
T Consensus 235 g~~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~ 314 (503)
T 2w40_A 235 PDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTA 314 (503)
T ss_dssp GGGTTCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCSTTSCCEEEEEEEESCS
T ss_pred CCCCCceEEEECchHHHHHHhCCCCCCCcEEEEechhheeeeecCCccccCCCCceeEEEeecCCCCCceEEEechhhhh
Confidence 35 89999999999999999999 9999999999999987776545666666777777775410002389999999999
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHH
Q 009868 322 GAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401 (523)
Q Consensus 322 G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r 401 (523)
|.+++|+++ ++...+|++++++++++|+++|++|+|||.|+|+|+|||++||+|+||+..|+++|++||++|||||++|
T Consensus 315 g~~~~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~ 393 (503)
T 2w40_A 315 GSGVSWLLK-NKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLN 393 (503)
T ss_dssp HHHHHHHHH-TTSSSCGGGHHHHHHHCCSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHH-hCCcCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 8766679999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccCc-cEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHH
Q 009868 402 DVLDSMQKDAVEKGVIKDAKSE-FLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIF 480 (523)
Q Consensus 402 ~~l~~l~~~~g~~~~~~~~~~~-~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a 480 (523)
++++.|++..|.+ + ++|+++||++||++|+|++||++|+||.++...|++|+|||++|++++|.|+|++++
T Consensus 394 ~~~~~l~~~~g~~--------~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~~~~e~~alGaA~la~~~~G~~~~~~~~ 465 (503)
T 2w40_A 394 EIVDSLTSDMGIE--------MLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSV 465 (503)
T ss_dssp HHHHHHHHHHTCS--------CCSCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTCSSCHHHH
T ss_pred HHHHHHHHhcCCC--------ccceEEEeCccccCHHHHHHHHHHHCCeEEecCCCcchHHHHHHHHHHHhCccCCHHHH
Confidence 9999998756777 8 899999999999999999999999999999999999999999999999999999998
Q ss_pred hcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 481 DSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 481 ~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
.+.+. +..++|+|++++ +.| ++|++|+++|++.++|
T Consensus 466 ~~~~~-~~~~~~~P~~~~-~~y~~~y~~~~~~~~~~~~~ 502 (503)
T 2w40_A 466 KSLLR-RSDAVFHSKMDD-KKRKKKTSEWNKAVERTLIQ 502 (503)
T ss_dssp HHHHT-CEEEEECCCSCH-HHHHHHHHHHHHHHHHHHCC
T ss_pred HHhcc-CCCcEEccCCCH-HHHHHHHHHHHHHHHHHhhc
Confidence 65544 467899999998 555 6899999999998877
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-96 Score=787.67 Aligned_cols=491 Identities=49% Similarity=0.861 Sum_probs=447.7
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
.|+||||+|||++|++|+|.+|+++++.+.+++..+|.+||.||||++||+++++++++++++ .++++.+ |.+|||
T Consensus 2 ~~~lgiDiGtts~k~~l~d~~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~-i~~Igi 77 (504)
T 2d4w_A 2 DYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR---GNLTHED-IAAVGI 77 (504)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---TTCCGGG-EEEEEE
T ss_pred CEEEEEecCCcceEEEEECCCCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHH---cCCCccc-EEEEEE
Confidence 479999999999999999999999999999999889999999999999999999999999887 4566678 999999
Q ss_pred ccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhc
Q 009868 87 TNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKK 166 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~ 166 (523)
++|++++++||+++|+|++|+|.|+|.|+.++++++.+.. +.++++++||+++++.++++||+|+++|+|++|+++++
T Consensus 78 s~~g~~~v~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 155 (504)
T 2d4w_A 78 TNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGGDE--GAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEK 155 (504)
T ss_dssp EECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHCSS--CGGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHHHHH
T ss_pred eCCCCeEEEEECCCCCCccccceecccChHHHHHHHHhhc--chHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHHHhc
Confidence 9999999999984599999999999999999999998754 46789999999999999999999999999999999998
Q ss_pred CCceeeChhHHHHHhhcCCCCCce---eEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc-C
Q 009868 167 GDALFGTIDTWLIWNLTGGVNGGL---HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK-G 242 (523)
Q Consensus 167 ~~~~~~~~~d~l~~~LTG~~~~~~---~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~-~ 242 (523)
++++|++++|||.|+|||+. + +++|+|+||+|+|||+++++|++++|+.+||+.++||+|+++++++|+++. .
T Consensus 156 ~~~~~~~~~d~l~~~LTG~~---~~~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~ 232 (504)
T 2d4w_A 156 GDLLFGNTDTWVLWNMTGGT---EGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRG 232 (504)
T ss_dssp TCEEEECHHHHHHHHHTTTT---TTCCCEEEHHHHTTTTCEETTTTEECHHHHHHTTCCGGGSCEEECSEEEEEECCTTS
T ss_pred CCeEEecHHHHHHHHhcCCC---cCCceeeehhhhhhhcCccCCCCccCHHHHHHhCCCHHHCCCccCCccceeccchHH
Confidence 88889999999999999941 4 899999999999999999999999999999999999999999999999976 3
Q ss_pred CCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhch
Q 009868 243 WPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIA 321 (523)
Q Consensus 243 ~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (523)
.+.+ +||++|++|++|+++|+|+ ++|++++++|||+++.+++++.|..++.+.+..++|..+. .+..|.++++++++
T Consensus 233 ~~G~-~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~ 310 (504)
T 2d4w_A 233 LVPG-VPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIGD-APAVYALEGSIAVT 310 (504)
T ss_dssp SSTT-CEEEEEEEHHHHHHHHTTCCSTTEEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCTT-SCCEEEEEEEESCS
T ss_pred hCCC-CeEEEECCcHHHHHhhCCCCCCCcEEEEcchhheeeeecCCccccCCCCcEEEEEEEcCC-CCceEEEcchhhhH
Confidence 2335 9999999999999999999 9999999999999987776545666666777777775410 12389999999999
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHH
Q 009868 322 GAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVK 401 (523)
Q Consensus 322 G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r 401 (523)
|.+++|+++.++...+|++++++++++|+++|++|+|||.|+|+|+|||++||+|+||+..|+++||+||++|||||++|
T Consensus 311 G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~ 390 (504)
T 2d4w_A 311 GSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSR 390 (504)
T ss_dssp HHHHHHHHHTTCTTTTCSCTHHHHTTSSSCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999988765678889999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHh
Q 009868 402 DVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFD 481 (523)
Q Consensus 402 ~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~ 481 (523)
++++.|++..|.+ +++|+++||++||++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++.
T Consensus 391 ~~~~~l~~~~g~~--------~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~ 462 (504)
T 2d4w_A 391 EVVDAMNADSGVD--------LTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWKGEQDVI 462 (504)
T ss_dssp HHHHHHHHHHSCC--------CCEEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHHTSSCSHHHHH
T ss_pred HHHHHHHHhcCCC--------cceEEEeCCcccCHHHHHHHHHHhCCeEEeCCCCcchHHHHHHHHHhhcCccCCHHHHH
Confidence 9999998766877 89999999999999999999999999999999999999999999999999999999984
Q ss_pred cccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhchh
Q 009868 482 SGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNLA 519 (523)
Q Consensus 482 ~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~~ 519 (523)
++. +..++|+|++++ +.| ++|++|+++|+++++|.
T Consensus 463 -~~~-~~~~~~~P~~~~-~~y~~~y~~~~~~~~~~~~~~ 498 (504)
T 2d4w_A 463 -DNW-AEDKRWSPSMES-GERERLYRNWKKAVTKTMEWV 498 (504)
T ss_dssp -HHC-CEEEEECCCSCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhc-CCCeEEccCCCH-HHHHHHHHHHHHHHHHHhccc
Confidence 554 467899999998 555 68999999999999884
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-96 Score=783.96 Aligned_cols=491 Identities=48% Similarity=0.816 Sum_probs=446.7
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+|+||||+|||++|++|+|.+|+++.+.+.+++..+|.+||.||||++||+++++++++++++ .++++++ |.+|||
T Consensus 2 ~~~lgiDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~-i~~Igi 77 (495)
T 2dpn_A 2 AFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRR---AGAEAGE-VLALGI 77 (495)
T ss_dssp -CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHH---TTCCGGG-CCEEEE
T ss_pred cEEEEEeeCCcceEEEEECCCCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHh---cCCCccc-EEEEEE
Confidence 478999999999999999999999999999999889999999999999999999999999887 4566678 999999
Q ss_pred ccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhc
Q 009868 87 TNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKK 166 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~ 166 (523)
++|++++++||+++|+|++|+|.|+|.|+.++++++.+. +..++++++||+++++.++++||+|+++|+|++|+++++
T Consensus 78 s~~~~~~~~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~--~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 155 (495)
T 2dpn_A 78 TNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAK--GLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEG 155 (495)
T ss_dssp EECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHT--TCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHHHHH
T ss_pred eCCCccEEEEECCCCcCCccceeecccChHHHHHHHHhc--cchhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHhc
Confidence 999999999998459999999999999999999999876 346789999999999999999999999999999999998
Q ss_pred CCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCCC
Q 009868 167 GDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPIT 246 (523)
Q Consensus 167 ~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~~ 246 (523)
++++|++++|||.|+|||+. ++++|+|+||+|+|||+++++|++++|+.+||+.++||+|+++++++|+++...+.+
T Consensus 156 ~~~~~~~~~d~l~~~LTG~~---~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~~G~ 232 (495)
T 2dpn_A 156 GGVAFGTVDTWLIWNLTGGK---VHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGA 232 (495)
T ss_dssp TCEEEECHHHHHHHHHTTTS---CCEECHHHHTTSSSEETTTTEECHHHHHHTTCCSTTCCEECCTTSCCCBCCHHHHSS
T ss_pred CCcEEECHHHHHHHHhcCCC---eEEEehHHhHhhcCccCccCCcCHHHHHHcCCCHHHCCCccCCCCeeEeccHHHcCC
Confidence 78889999999999999942 589999999999999999999999999999999999999999999999997532227
Q ss_pred CCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHH
Q 009868 247 GIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAV 325 (523)
Q Consensus 247 g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 325 (523)
|+||++|++|++|+++|+|+ ++|++++++|||+++.+.+++.|..++.+.+..++|..+ .++.|.++++++++|.++
T Consensus 233 g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~g~~~ 310 (495)
T 2dpn_A 233 PVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLG--GRATYALEGSLFVAGAAV 310 (495)
T ss_dssp CCBEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEET--TEEEEEEEEEESCSHHHH
T ss_pred CCeEEEECcHHHHHHHhCCCCCCCcEEEEccHhhhhhhhcCCccccCCCCceEEEEEEcC--CCCEEEEechHHhHHHHH
Confidence 99999999999999999999 999999999999998777654566666677777777652 134899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHH
Q 009868 326 QWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLD 405 (523)
Q Consensus 326 ~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~ 405 (523)
+|+++ ++...+|++++++++++|+++|++|+|||.|+|+|+|||++||+|+||+..|+++||+||++||+||++|++++
T Consensus 311 ~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~ 389 (495)
T 2dpn_A 311 GWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVL 389 (495)
T ss_dssp HHHHH-TTSSSSTTTHHHHHHTCSCCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-cCCccCHHHHHHHHhhCCCCCcEEEecCCCCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 87666788999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccC
Q 009868 406 SMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGER 485 (523)
Q Consensus 406 ~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~ 485 (523)
.|++..|.+ +++|+++||++||++|+|++||++|+||.++...|++|+|||++|++++|.| |++++ .++.
T Consensus 390 ~l~~~~g~~--------~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~~~~e~~alGaA~la~~a~G~~-~~~~~-~~~~ 459 (495)
T 2dpn_A 390 AMEEEAGVR--------LKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAGAL-SPEDV-AGRF 459 (495)
T ss_dssp HHHTTTSCC--------CCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHHTSC-CHHHH-HHHC
T ss_pred HHHHhcCCC--------CcEEEEecccccCHHHHHHHHHHhCCeeEecCCcccHHHHHHHHHHhhcCcC-CHHHH-HHhc
Confidence 998766777 8999999999999999999999999999999999999999999999999999 99988 4544
Q ss_pred CCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhchhc
Q 009868 486 TKTSTTFKPVLNEEFRKKKAESWCRAVERTFNLAD 520 (523)
Q Consensus 486 ~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~~ 520 (523)
+..++|+|+++...+.++|++|+++|+++++|.+
T Consensus 460 -~~~~~~~P~~~~~~y~~~~~~~~~~~~~~~~~~~ 493 (495)
T 2dpn_A 460 -REAERFLPTMPEGRREALYRRWREAVERAKGWAR 493 (495)
T ss_dssp -CEEEEECCCSCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred -CCCeEEccCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4678999999983344789999999999998843
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-96 Score=782.86 Aligned_cols=485 Identities=49% Similarity=0.778 Sum_probs=444.3
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++|+||||+|||++|++++|.+|+++++.+.+++..+|.+||.||||++||+++++++++++++ .++++++ |.+||
T Consensus 2 ~~~~lgiDiGtt~~k~~l~d~~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~~~~-i~~Ig 77 (497)
T 2zf5_O 2 EKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQS---ARIEPNQ-IAAIG 77 (497)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGG-EEEEE
T ss_pred CcEEEEEecCCchhEEEEECCCCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCccc-EEEEE
Confidence 3589999999999999999999999999999999889999999999999999999999999877 3566678 99999
Q ss_pred EccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHh
Q 009868 86 LTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIK 165 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~ 165 (523)
|++|++++++||+ +|+|++|+|.|+|.|+.++++++.+. ..++++++||+++++.++++||+|+++|+|++|++++
T Consensus 78 is~~~~~~v~~D~-~G~~l~~~i~w~D~R~~~~~~~l~~~---~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 153 (497)
T 2zf5_O 78 VTNQRETTLVWDK-DGKPLYNAIVWQCRRTAEMVEEIKRE---YGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAE 153 (497)
T ss_dssp EEECSSCEEEECT-TCCBSSCEECTTCCTTHHHHHHHHHH---HHHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHHH
T ss_pred EecCCCcEEEECC-CCCCcccceeecccCcHHHHHHHHhh---hHHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHh
Confidence 9999999999999 99999999999999999999999875 2467999999999999999999999999999999999
Q ss_pred cCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCCCC
Q 009868 166 KGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI 245 (523)
Q Consensus 166 ~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~l~ 245 (523)
++.++|++++|||.|+||| ++++|+|+||+|++||+++++|++++|+.+||+.++||+|+++++++|+++...+.
T Consensus 154 ~~~~~~~~~~d~l~~~LTG-----~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~~g 228 (497)
T 2zf5_O 154 KGEVMFGTVDTFLIYRLTG-----EHVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLG 228 (497)
T ss_dssp TTCCEEEEHHHHHHHHHHS-----CCEEEHHHHTTSSSEETTTTEECHHHHHHTTCCGGGCCEEECSEEEEEECCHHHHS
T ss_pred cCCCEEEcHHHHHHHHHhC-----CeeeeHHHhhhhcCccCCCCCcCHHHHHHcCcCHHHCCCcCCCCCeeeecCHHHcC
Confidence 8788899999999999999 89999999999999999999999999999999999999999999999999753223
Q ss_pred CCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHH
Q 009868 246 TGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAA 324 (523)
Q Consensus 246 ~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 324 (523)
+|+||++|++|++|+++|+|+ ++|++++++|||+++.+.++ +|..++.+.+..++|..+ .++.|.++++++++|.+
T Consensus 229 ~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~G~~ 305 (497)
T 2zf5_O 229 AEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTD-KMVLYSDNLLTTIAWGLN--GRVSYALEGSIFVTGAA 305 (497)
T ss_dssp SCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEE-TCCCCCTTSEEEEEEEET--TEEEEEEEEEESCSHHH
T ss_pred CCCeEEEEccHHHHHHHhCCCCCCCcEEEEcchhheeeEECC-CCccCCCCcEEEEEEEcC--CCCEEEEechhhhHHHH
Confidence 799999999999999999999 99999999999999877665 466666677777777652 13489999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHH
Q 009868 325 VQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVL 404 (523)
Q Consensus 325 l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l 404 (523)
++|+++.++...+|++++++++++|+++|++|+|||.|+|+|+|||++||+|+||+..|+++|++||++||+||++|+++
T Consensus 306 ~~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~l 385 (497)
T 2zf5_O 306 VQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVV 385 (497)
T ss_dssp HHHHHHTSCCCSCGGGHHHHHTTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHhhCCCCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999988766678999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhccc
Q 009868 405 DSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGE 484 (523)
Q Consensus 405 ~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~ 484 (523)
+.|++. + + +++|+++||++||++|+|++||++|+||+++...|++|+|||++|++++|.|++++++ .++
T Consensus 386 ~~l~~~-~-~--------~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~g~~~~~~~~-~~~ 454 (497)
T 2zf5_O 386 DEMEKL-V-Q--------IKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTREI-AEL 454 (497)
T ss_dssp HHHTTT-S-C--------CCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTSSCCHHHH-HTT
T ss_pred HHHHhc-C-C--------cceEEEeCccccCHHHHHHHHhhcCCeEEEcCCCcchHHHHHHHHHHHhCccCCHHHH-HHh
Confidence 999764 5 6 8999999999999999999999999999999999999999999999999999999998 455
Q ss_pred CCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhchh
Q 009868 485 RTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNLA 519 (523)
Q Consensus 485 ~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~~ 519 (523)
. +..++|+|+++. +.| ++|++|+++|++++.|.
T Consensus 455 ~-~~~~~~~P~~~~-~~y~~~y~~~~~~~~~~~~~~ 488 (497)
T 2zf5_O 455 W-KAERIFEPKMDE-KTRERLYKGWKEAVKRAMGWA 488 (497)
T ss_dssp C-CEEEEECCCCCH-HHHHHHHHHHHHHHHTTTTGG
T ss_pred c-CCCeEECCCccH-HHHHHHHHHHHHHHHHHHhHh
Confidence 4 467899999998 555 68999999999998883
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-93 Score=757.50 Aligned_cols=472 Identities=23% Similarity=0.335 Sum_probs=418.3
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|+||||+|||++|++++|.+|++++..+.+++..+|++||+||||++||+++++++++++++ . .+++ |.+|||+
T Consensus 1 ~~lgiDiGtt~~k~~l~d~~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~--~~~~-i~~Igis 74 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ---H--SLQD-VKALGIA 74 (484)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---S--CCTT-CCEEEEE
T ss_pred CEEEEEecCcccEEEEECCCCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHh---C--Cccc-eEEEEEc
Confidence 46999999999999999999999999999999999999999999999999999999999876 2 2457 9999999
Q ss_pred cccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcC
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKG 167 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 167 (523)
+|++++++||+ +|+|++|+|.|+|.|+.++++++.+.. + .++++||+++++.++++||+|+++|+||+|+++++
T Consensus 75 ~~~~~~v~~D~-~G~~l~~~i~w~D~R~~~~~~~l~~~~--~--~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~- 148 (484)
T 2itm_A 75 GQMHGATLLDA-QQRVLRPAILWNDGRCAQECTLLEARV--P--QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDK- 148 (484)
T ss_dssp ECSSCBEEECT-TCCBCSCEECTTCCTTHHHHHHHHHHC--T--THHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCCE-
T ss_pred CCcCcEEEECC-CcCCCcccceecccCcHHHHHHHHHhH--H--HHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhh-
Confidence 99999999999 799999999999999999999999874 2 46788999999999999999999999999999875
Q ss_pred CceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccccc------
Q 009868 168 DALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGK------ 241 (523)
Q Consensus 168 ~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------ 241 (523)
|+.++|||.|+||| ++++|+|+||+|++||+++++||+++|+.+||+.++||+|+++++++|+++.
T Consensus 149 ---~l~~~d~l~~~LTG-----~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lp~i~~~~~~~G~~~~~~a~~~ 220 (484)
T 2itm_A 149 ---VLLPKDYLRLRMTG-----EFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAW 220 (484)
T ss_dssp ---EECHHHHHHHHHHS-----CCEEEHHHHHTTTCEETTTTEECHHHHHTTTCCGGGSCEEECTTSEEEECCHHHHHHH
T ss_pred ---eeCcHHHHHHHHhC-----CceeeHHHhhccccccCCCCCcCHHHHHHcCCCHHHCCCccCCcceeeccCHHHHHHh
Confidence 88899999999999 8999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCcEEEeccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhc
Q 009868 242 GWPITGIPISGCLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAI 320 (523)
Q Consensus 242 ~~l~~g~pV~~g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
| |+ |+||++|+||++|+++|+|+ ++|++++++|||+++.+..+ .|..++.+....+++ ..++.|++++++.+
T Consensus 221 G-l~-g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~ 293 (484)
T 2itm_A 221 G-MA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSE-GFLSKPESAVHSFCH----ALPQRWHLMSVMLS 293 (484)
T ss_dssp T-SC-CCEEECCEEHHHHHHHHHTCCSTTCEEEEESSSEEEEEECS-SCCCCCSSSCEEEEC----SSTTCEEEEEEECC
T ss_pred C-CC-CCeEEEEchHHHHHHHhCCCCCCCcEEEEccchheeEEecC-CCccCcccceEEeec----ccCCeeeeeehhhh
Confidence 5 77 99999999999999999999 99999999999988765553 444444333333333 24679999999999
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQV-NSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQ 399 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~-~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~ 399 (523)
+|.+++|+++.++. .+|+++.+++++. +++++++|+|||.|+|+|+|||++||+|+|++..|+++|++||++||++|+
T Consensus 294 ~G~~~~W~~~~~~~-~~~~~~~~~a~~~~~~~~gl~~lP~~~G~r~P~~~~~a~g~~~Gl~~~~~~~~~~rAvlEgia~~ 372 (484)
T 2itm_A 294 AASCLDWAAKLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYA 372 (484)
T ss_dssp HHHHHHHHHHHTTC-CSHHHHHHHGGGCCTTSCCCEEEEEEC--------CCEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-ccHHHHHHHHhcCCCCCCCeEEeCCCCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999998864 4688888887776 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCc-cHHHHHHHHHHhccccCChh
Q 009868 400 VKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIET-TALGAAFAAGLAIGVFKEEE 478 (523)
Q Consensus 400 ~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~-~alGaA~lA~~~~G~~~~~~ 478 (523)
+|++++.|++ .|.+ +++|+++||++||++|+|++||++|+||.+++..|. +|+|||++|++++|.|+|++
T Consensus 373 ~~~~~~~l~~-~g~~--------~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA~~~~g~~~~~~ 443 (484)
T 2itm_A 373 LADGMDVVHA-CGIK--------PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLI 443 (484)
T ss_dssp HHHHHHHHHT-TTCC--------CSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHHHHHHCTTSCHH
T ss_pred HHHHHHHHHH-cCCC--------cceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHHHHHcCCcCCHH
Confidence 9999999986 4777 899999999999999999999999999999998885 89999999999999999999
Q ss_pred HHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhch
Q 009868 479 IFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERTFNL 518 (523)
Q Consensus 479 ~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 518 (523)
++.+.+ ...++|+|++++++.| ++|++|++++++++.+
T Consensus 444 ~~~~~~--~~~~~~~P~~~~~~~y~~~y~~~~~~~~~~~~~ 482 (484)
T 2itm_A 444 ELLPQL--PLEQSHLPDAQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_dssp HHSCCC--CEEEEECCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhc--CCCeEECCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 985543 3568899999887766 6799999999998764
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-92 Score=765.64 Aligned_cols=477 Identities=21% Similarity=0.318 Sum_probs=423.1
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
++|+||||+|||++|++|||.+|+++++.+.+++..+|++||+||||++||+++++++++++++ .++.+.+ |.+||
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~-I~~Ig 79 (554)
T 3l0q_A 4 ASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQ---ADINPIQ-VKGLG 79 (554)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHH---HTCCGGG-EEEEE
T ss_pred CcEEEEEEECcccEEEEEECCCCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCHhH-EEEEE
Confidence 3599999999999999999999999999999999999999999999999999999999999887 4566778 99999
Q ss_pred EccccceeEEeeCCCCccc---------cccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhc
Q 009868 86 LTNQRETTVLWSKSTGCPL---------YNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMEN 156 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l---------~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~ 156 (523)
|++| +++++||+ +|+|| +|+|+|+|.|+.++++++++. . ++++++||+++++.++++||+|+++|
T Consensus 80 is~~-~~~v~~D~-~G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l~~~---~-~~~~~~tG~~~~~~~~~~Kl~Wl~~~ 153 (554)
T 3l0q_A 80 FDAT-CSLVVLDK-EGNPLTVSPSGRNEQNVIVWMDHRAITQAERINAT---K-HPVLEFVGGVISPEMQTPKLLWLKQH 153 (554)
T ss_dssp EEEC-SCEEEEET-TSCBCCCSTTCCTTCCEECTTCCTTHHHHHHHHHH---T-CGGGGGBTTCCCTTSHHHHHHHHHHH
T ss_pred EcCC-CceEEECC-CCCEeeccCCCCCCCCcEEecccchHHHHHHHHHh---H-HHHHHHhCCCCChhhHHHHHHHHHHh
Confidence 9999 79999999 89999 899999999999999999986 2 46889999999999999999999999
Q ss_pred ChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhccccc--ccCCCCCCCHHHHhhcCCCCC------CCC-
Q 009868 157 VDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTML--MNLKTLDWDKPTLETLGIPAE------ILP- 227 (523)
Q Consensus 157 ~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl--~d~~~~~W~~~ll~~~gi~~~------~LP- 227 (523)
+||+|+++++ |++++|||.|+||| +. ++|++|.+++ ||+++++||+++|+.+||+.. +||
T Consensus 154 ~Pe~~~~~~~----~~~~~dyl~~~LTG-----~~--~~s~as~t~~~~~d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp~ 222 (554)
T 3l0q_A 154 MPNTWSNVGH----LFDLPDFLTWRATK-----DE--TRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGA 222 (554)
T ss_dssp CHHHHHHEEE----EEEHHHHHHHHHHS-----CC--CEEHHHHHHHSCCBTTTTBCCHHHHHHHTCGGGGHHHHTTTCS
T ss_pred ChHHHHHhce----EEcHHHHHHHHHhC-----Cc--cccccchhhccccccccCCCCHHHHHHcCCccccchhHHhCCC
Confidence 9999999875 89999999999999 44 3677777765 788999999999999999863 899
Q ss_pred CcccCCcccc-ccc------cCCCCCCCcEEEeccchhhhhhcC-CC--CCC-------CeEEEecCceeeeeecCcccc
Q 009868 228 KIVSNSEIIG-KIG------KGWPITGIPISGCLGDQHAAMLGQ-AC--KKG-------EAKSTYGTGAFILMNTGEEVV 290 (523)
Q Consensus 228 ~i~~~~~~~G-~v~------~~~l~~g~pV~~g~gD~~aa~~g~-g~--~~g-------~~~~~~GTs~~~~~~~~~~~~ 290 (523)
+|+++++++| +|+ .| |++|+||++|++|++|+++|+ |+ +|| ++.+++|||+++...++ +|.
T Consensus 223 ~i~~~~~~~G~~lt~~~A~~~G-L~~g~pV~~g~gD~~aa~lg~~G~~~~~G~~~~~~~~~~~~~GTs~~~~~~~~-~~~ 300 (554)
T 3l0q_A 223 TVKPMGAPLGHGLSQRAASEMG-LIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALIGGTSTAHMAMSR-SAH 300 (554)
T ss_dssp CEECTTCBCTTSSCHHHHHHHT-CCTTCEEBCCEEHHHHHHHHHTTCCCTTSCCCCTTTEEEEECSSSEEEEEEES-SCC
T ss_pred cccCCcCeeCcccCHHHHHHhC-CCCCCeEEEeChHHHhHHhhccccccCCCccccccceEEEEecchheeeeecC-Ccc
Confidence 6999999999 886 35 889999999999999999996 65 588 78899999998776554 565
Q ss_pred ccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCC------------CCCHHHHHHHHHhc-CC-------
Q 009868 291 KSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGI------------ISSASEIEELALQV-NS------- 350 (523)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~------------~~~~~~l~~~a~~~-~~------- 350 (523)
.++ +.+..+ | .+..|+.|.++++++++|.+++|+++.++. .+.|+.|++.+++. ++
T Consensus 301 ~~~-~~~~~~-~--~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (554)
T 3l0q_A 301 FIS-GIWGPY-Y--SAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFL 376 (554)
T ss_dssp CCT-TSEEEE-E--TSSSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSGGGGGGG
T ss_pred ccC-Ccceee-c--ccccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCCCccccc
Confidence 543 444222 2 123478999999999999999999998752 23477887777665 33
Q ss_pred CCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHH---HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEE
Q 009868 351 TGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHI---ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLR 427 (523)
Q Consensus 351 ~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l---~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~ 427 (523)
++|++|+|||+|+|+|+|||++||+|+||+..|+++|| +||++|||||++|++++.|++ .|.+ +++|+
T Consensus 377 ~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~-~g~~--------~~~i~ 447 (554)
T 3l0q_A 377 TNDIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQ-NGYN--------IDTMM 447 (554)
T ss_dssp GTTCCEECCTTCBCSSSCBTTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCC--------CCEEE
T ss_pred cCceEEcccccCCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------CCEEE
Confidence 68999999999999999999999999999999999999 889999999999999999987 5777 89999
Q ss_pred EecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeC-CCCHHHHH-HHH
Q 009868 428 VDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKP-VLNEEFRK-KKA 505 (523)
Q Consensus 428 ~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P-~~~~~~~~-~~y 505 (523)
++||++||++|+||+||+||+||++++..|++|+|||++|++++|.|+|+++++++++ +..++|+| ++++++.| ++|
T Consensus 448 ~~GG~aks~~~~Qi~ADv~g~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~Y~~~y 526 (554)
T 3l0q_A 448 ASGGGTKNPIFVQEHANATGCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMS-RIGKTVTPQTNKIKAYYDRKY 526 (554)
T ss_dssp EESGGGGCHHHHHHHHHHHCCEEEEESCSCHHHHHHHHHHHHHTTSSSSHHHHHHHHC-CEEEEECCCCHHHHHHHHHHH
T ss_pred EeCccccCHHHHHHHHHhhCCeEEecCCCcchHHHHHHHHHHHcCCcCCHHHHHHHhc-CCCcEEeCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999867776 56789999 99988877 679
Q ss_pred HHHHHHHHHHhchh
Q 009868 506 ESWCRAVERTFNLA 519 (523)
Q Consensus 506 ~~~~~~~~~~~~~~ 519 (523)
++|+++|+.++++.
T Consensus 527 ~~y~~l~~~~~~~~ 540 (554)
T 3l0q_A 527 RVFHQMYHDHMRYQ 540 (554)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988763
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-90 Score=746.06 Aligned_cols=475 Identities=16% Similarity=0.202 Sum_probs=415.5
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCC----CCeE-------EeCHHH-HHHHHHHHHHHHHHHHhh
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPE----AGWV-------EHEPME-ILESVRVCMAKALDKATA 72 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~----~g~~-------e~d~~~-~~~~~~~~l~~~~~~~~~ 72 (523)
.++|+||||+|||++|++|||.+|+++++.+.+++..+|. +||+ ||||++ ||+++..+++ .+.+
T Consensus 8 ~~~~~lgID~GTts~Ka~l~d~~G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~~-~l~~--- 83 (538)
T 4bc3_A 8 PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILE-KMKA--- 83 (538)
T ss_dssp -CCEEEEEEECSSEEEEEEEETTCCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHHH-HHHH---
T ss_pred CCCEEEEEEEcCcCEEEEEECCCCCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHHH-HHHH---
Confidence 4579999999999999999999999999999999877775 7775 678875 6666555444 4444
Q ss_pred CCCCcccCceEEEEccccceeEEeeCCCCc--------------------cccccccccccCCHHHHHHHHHhCCCChHH
Q 009868 73 DGHNVDSGLKAIGLTNQRETTVLWSKSTGC--------------------PLYNAIVWMDARTSSVCRKLEKELPGGKTH 132 (523)
Q Consensus 73 ~~~~~~~~I~aIgis~~~~~~v~~d~~~g~--------------------~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~ 132 (523)
.++++.+ |.+||||+|||++|+||+ +|+ |++|+|+|+|.|+.++++++.+.+ +..++
T Consensus 84 ~~~~~~~-I~aIgis~q~~~~v~~D~-~g~~~l~~l~~~~~l~~~~~~~~pl~~ai~W~D~R~~~~~~~l~~~~-~~~~~ 160 (538)
T 4bc3_A 84 SGFDFSQ-VLALSGAGQQHGSIYWKA-GAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAV-GGAQA 160 (538)
T ss_dssp TTCCGGG-EEEEEEEECSSCEEEEET-THHHHHHTCCTTSCHHHHHTTCBSCSEEECTTCCCCHHHHHHHHHHH-TSHHH
T ss_pred cCCChHH-eEEEEecccceeEEEECC-CccccccccccccchhhhccccccccCCcccccCcHHHHHHHHHHhh-CcHHH
Confidence 5677788 999999999999999998 654 999999999999999999999875 34678
Q ss_pred HHHHhCCCCCccChHHHHHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCCCCceeE-eecchhcccccccCCCCCC
Q 009868 133 FLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHV-TDVSNASRTMLMNLKTLDW 211 (523)
Q Consensus 133 ~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~-~d~s~As~tgl~d~~~~~W 211 (523)
++++||+++++.|+++||+|+++|+||+|+++++ |++++|||.|+||| +.+ +|+|+||+|+|||+++++|
T Consensus 161 ~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~----~~~~~d~l~~~LTG-----~~~~td~s~As~t~l~d~~~~~W 231 (538)
T 4bc3_A 161 LSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTER----ISLVSSFAASLFLG-----SYSPIDYSDGSGMNLLQIQDKVW 231 (538)
T ss_dssp HHHHHSSCCCTTSHHHHHHHHHHHCHHHHHTEEE----EEEHHHHHHHHHHT-----SCCCCBHHHHTTSSCEETTTTEE
T ss_pred HHHHHCCCCccccHHHHHHHHHHcCHHHHHHhhe----EEcHHHHHHHHHhC-----CCcccccchhhcccccccccCCC
Confidence 9999999999999999999999999999999986 89999999999999 666 9999999999999999999
Q ss_pred CHHHHhhcCCC-CCCCCCcccCCcccccccc------CCCCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeee
Q 009868 212 DKPTLETLGIP-AEILPKIVSNSEIIGKIGK------GWPITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMN 284 (523)
Q Consensus 212 ~~~ll~~~gi~-~~~LP~i~~~~~~~G~v~~------~~l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~ 284 (523)
++++|+.+|++ .++||+|+++++++|+++. | |++|+||++|++|++|+++|++.++|++++++|||+++.++
T Consensus 232 ~~~ll~~~gi~~~~~LP~i~~~~~~~G~l~~~~a~~~G-l~~g~pV~~g~~D~~aa~~g~~~~~g~~~~s~GTs~~~~~~ 310 (538)
T 4bc3_A 232 SQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYG-FPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLW 310 (538)
T ss_dssp CHHHHHHHCTTHHHHHCCCBCSSCEEEECCHHHHHHHC-CCTTCEEECCEEHHHHHHHHTTCCTTCEEEEESSSEEEEEE
T ss_pred CHHHHHHhCccHHHHCCCcccccccccccCHHHHHHhC-CCCCCeEEEecccHHhhhhccccCCCcEEEEeccchheEEe
Confidence 99999999998 7899999999999999975 5 88999999999999999999933999999999999998777
Q ss_pred cCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCceEEEcCCCCC
Q 009868 285 TGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVN-STGGVYFVPAFNGL 363 (523)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~-~~~gl~~~P~l~G~ 363 (523)
++ +|..++.+. .+++.. .++.|..+++++++|.+++|+++.++. .+|++|+++++++| +++|++|+|||.|+
T Consensus 311 ~~-~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~gg~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lp~~~Ge 383 (538)
T 4bc3_A 311 LQ-EPMPALEGH--IFCNPV---DSQHYMALLCFKNGSLMREKIRNESVS-RSWSDFSKALQSTEMGNGGNLGFYFDVME 383 (538)
T ss_dssp ES-SCCCCSSSE--EEEETT---EEEEEEEEEEESSSHHHHHHHHHHHST-TCHHHHHHHHHTSCTTGGGCEEEEESSCC
T ss_pred cC-CCCCCCCcc--eEEeec---CCCCEEEeehhhccchHHHHHHHHhcC-CCHHHHHHHHhcCCCCCCCeEEeecCCCC
Confidence 65 466555442 344422 245699999999999999999998863 57999999999875 88999999999999
Q ss_pred CCCCCCCCCceeEE------cCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHH
Q 009868 364 FAPWWRDDARGVCI------GITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNL 437 (523)
Q Consensus 364 r~P~~~~~arg~~~------gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~ 437 (523)
|+|+ ++|.|. |++. |+++||+||++|||||++|++++.|++ .+.+ +++|+++||++||++
T Consensus 384 r~P~----~~G~~~~~~~~~g~~~-~~~~~l~RAvlEgia~~~r~~~~~l~~-~g~~--------~~~i~~~GGga~s~~ 449 (538)
T 4bc3_A 384 ITPE----IIGRHRFNTENHKVAA-FPGDVEVRALIEGQFMAKRIHAEGLGY-RVMS--------KTKILATGGASHNRE 449 (538)
T ss_dssp SSSC----CCEEEEECTTSCEESC-CCHHHHHHHHHHHHHHHHHHHHHHTTC-CCCT--------TCCEEEEEGGGGCHH
T ss_pred cCCC----CCceeeeccccccccC-CCHHHHHHHHHHHHHHHHHHHHHHhhh-cCCC--------CCeEEEEcchhcCHH
Confidence 9997 455554 2343 899999999999999999999999875 4666 899999999999999
Q ss_pred HHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccc--cCChhHHhcccCCCCCcEEeCCCCHHHHH-HHHHHHHHHHHH
Q 009868 438 LMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGV--FKEEEIFDSGERTKTSTTFKPVLNEEFRK-KKAESWCRAVER 514 (523)
Q Consensus 438 ~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~--~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~ 514 (523)
|+||+||+||+||+++...|++|+|||++|++++|. |+|++++++.+. +..++|+|++++++.| ++|++|+++|++
T Consensus 450 ~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~ea~~~~~-~~~~~~~P~~~~~~~Y~~~y~~y~~l~~~ 528 (538)
T 4bc3_A 450 ILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAP-NPRLAATPSPGASQVYEALLPQYAKLEQR 528 (538)
T ss_dssp HHHHHHHHHTSCEEECCCTTHHHHHHHHHHHHHHHTGGGSCHHHHHTTSC-CCEEEECCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCceEecCCCCchHHHHHHHHHHHhCcccCCCHHHHHHhhc-CCCeeECCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 899999877765 5678999999998877 679999999999
Q ss_pred Hhch
Q 009868 515 TFNL 518 (523)
Q Consensus 515 ~~~~ 518 (523)
++..
T Consensus 529 ~~~~ 532 (538)
T 4bc3_A 529 ILSQ 532 (538)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-88 Score=727.30 Aligned_cols=458 Identities=20% Similarity=0.278 Sum_probs=403.7
Q ss_pred CceEEEEecCCCCceEEEEc-CCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYD-HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d-~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
++|+||||+|||++|++||| ++|+++++.+.++ +||+||||++||++++++++++ +. .++ |.+|
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~~~G~i~~~~~~~~------~g~~e~d~~~~~~~i~~~l~~~-------~~-~~~-I~~I 68 (515)
T 3i8b_A 4 RTLVAGVDTSTQSCKVRVTDAETGELVRFGQAKH------PNGTSVDPSYWWSAFQEAAEQA-------GG-LDD-VSAL 68 (515)
T ss_dssp SCEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------CSSSEECTHHHHHHHHHHHHHT-------TC-STT-EEEE
T ss_pred CcEEEEEEeccccEEEEEEECCCCeEEEEEEEeC------CCCceECHHHHHHHHHHHHHhc-------CC-ccC-ceEE
Confidence 45899999999999999999 8999999988775 4889999999999988877653 22 367 9999
Q ss_pred EEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCC-h--------------HHHHHHhCCCCCccChHHH
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGG-K--------------THFLEAVGLPISTYFSAVK 149 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~-~--------------~~~~~~tG~~~~~~~~~~k 149 (523)
||++|++++++||+ +|+|++|+|+|+|.|+.++++++.+.+ +. . ++++++||+++++.++++|
T Consensus 69 gis~q~~~~v~~D~-~G~pl~~~i~W~D~R~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~k 146 (515)
T 3i8b_A 69 AVGGQQHGMVILDN-QGNVIRDAMLWNDTSSAPQAAALIEKL-GAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTK 146 (515)
T ss_dssp EEEECSSCBEEECT-TSCBCSCEECTTCCTTHHHHHHHHHHH-HCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHHHH
T ss_pred EEeCCcceEEEECC-CCCCcCCcceecCCCHHHHHHHHHHhc-CcccccccccccccchhHHHHHHHHCCCCCchhHHHH
Confidence 99999999999998 899999999999999999999999875 12 1 7899999999999999999
Q ss_pred HHHHhhcChHHHHHHhcCCceeeChhHHHHHhhcCCC--------CCceeEeecchhcccccccCCCCCCCHHHHhhc-C
Q 009868 150 LLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGV--------NGGLHVTDVSNASRTMLMNLKTLDWDKPTLETL-G 220 (523)
Q Consensus 150 l~wl~~~~pe~~~~~~~~~~~~~~~~d~l~~~LTG~~--------~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~-g 220 (523)
|+|+++|+||+|+++++ |++++|||.|+|||+. ++.++++|+|+||+|+|||+++++|++++|+.+ |
T Consensus 147 l~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG~~~~~~~~~~~~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~~g 222 (515)
T 3i8b_A 147 VAWVAENEPENVKKIAA----ICLPHDWLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLE 222 (515)
T ss_dssp HHHHHHHCHHHHTTCSE----EECHHHHHHHHHTTCCCCCTTSCCCGGGCEEEHHHHTTSSSEETTTTEECHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHhe----ecCHHHHHHHHhcCCCcccccccccccceeecHHHhhcccCeeCCcCccCHHHHHhhcC
Confidence 99999999999999875 8999999999999930 000169999999999999999999999999998 9
Q ss_pred CC-----------CCCCCCcccCCccccccccCC-----CCCCCcEEEeccchhhhhhcCCCCCCCeEEEecCceeeeee
Q 009868 221 IP-----------AEILPKIVSNSEIIGKIGKGW-----PITGIPISGCLGDQHAAMLGQACKKGEAKSTYGTGAFILMN 284 (523)
Q Consensus 221 i~-----------~~~LP~i~~~~~~~G~v~~~~-----l~~g~pV~~g~gD~~aa~~g~g~~~g~~~~~~GTs~~~~~~ 284 (523)
|+ .++||+|+++++++|+++..+ |++|+||++|++|++|+++|+|.++|++++++|||+++.+.
T Consensus 223 i~~~~~~~~~~~~~~~LP~i~~~~~~~G~v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~g~~~g~~~~s~GTs~~~~~~ 302 (515)
T 3i8b_A 223 AAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNAMASLGLGMAVGDVSISLGTSGVAAAI 302 (515)
T ss_dssp HHHCHHHHHHHHHHSBCCEEECTTCCCSSCCCTTTTTTTSTTCCEECCCEEHHHHHHHHTTCCTTEEEEEESSSEEEEEC
T ss_pred CCcccccccccchHHHCCCCcCCcCcccCcCHHHHHHhCCCCCCeEEEECchHHHHHhhCCCCCCcEEEEechhhhhhcc
Confidence 98 789999999999999997542 78899999999999999999998899999999999988765
Q ss_pred cCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCCceEEEcCCCCC
Q 009868 285 TGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQV-NSTGGVYFVPAFNGL 363 (523)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~-~~~~gl~~~P~l~G~ 363 (523)
+ ++|..++.+.+..+++ .++.|+.++++.++|.+++|+++.++. +|++++++++++ |+++|++|+|||.|+
T Consensus 303 ~-~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~gg~~l~w~~~~~~~--~~~~l~~~a~~~~~g~~gl~~lP~~~Ge 374 (515)
T 3i8b_A 303 S-ENPTYDLTGAVSGFAD-----CTGHYLPLACTINGSRILDAGRAALGV--DYDELAKLAFASKPGANGITLVPYFDGE 374 (515)
T ss_dssp B-SSCCCCTTSCSEEEEC-----SSSSEEEEEEESCSTHHHHHHHHHHTC--CHHHHHHHHHHSCTTGGGCEEECCTTCB
T ss_pred c-CccccCCCCcEEeeec-----CCCCEEEeeecccHHHHHHHHHHHhCC--CHHHHHHHHHhCCCCCCCeEEecCCCCC
Confidence 5 4567666666655543 257799999999999999999998875 699999999988 588999999999999
Q ss_pred CCCCCCCCCceeEEcCCCCC-CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHH
Q 009868 364 FAPWWRDDARGVCIGITRFT-SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQ 442 (523)
Q Consensus 364 r~P~~~~~arg~~~gl~~~~-~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~ 442 (523)
|+|+| |++||+|+||+..| +++||+||++|||||++|++++.|++ .|.+ +++|+++||++||++|+||+
T Consensus 375 r~P~~-~~arg~~~Gl~~~~~~~~~l~RAvlEgia~~~r~~l~~l~~-~g~~--------~~~i~~~GGgaks~~~~Qi~ 444 (515)
T 3i8b_A 375 RTPNR-PNATATFSGMTLANTTRENLARAFVEGLLCSQRDCLELIRS-LGAS--------ITRILLIGGGAKSEAIRTLA 444 (515)
T ss_dssp TTTTB-TTCCCEEESCCTTTCSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCC--------CCEEEEESGGGGCHHHHHHH
T ss_pred cCCCC-cCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------CCEEEEECchhcCHHHHHHH
Confidence 99976 99999999999999 99999999999999999999999987 6877 89999999999999999999
Q ss_pred HhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHHHHHHH
Q 009868 443 ADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAES 507 (523)
Q Consensus 443 Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~y~~ 507 (523)
||+||+||+++...|++|+|||++|++++|.++++.+. ......+|+|+++. +..++|++
T Consensus 445 ADvlg~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~ 504 (515)
T 3i8b_A 445 PSILGMDVTRPATDEYVAIGAARQAAWVLSGETEPPAW----QLTIDGVETGEPTE-AVYEAYAK 504 (515)
T ss_dssp HHHHTSCEEEECCCCHHHHHHHHHHHHHHHCCSSCCCC----CCCEEEEECCCCCH-HHHHHHHH
T ss_pred HHHhCCceEecCCcccHHHHHHHHHHHHcCCCCChhHh----hhhccccCCCCccH-HHHHHHHH
Confidence 99999999999999999999999999999998886533 22346788999983 44444443
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-82 Score=669.51 Aligned_cols=443 Identities=15% Similarity=0.141 Sum_probs=365.0
Q ss_pred CcccCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Q 009868 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSG 80 (523)
Q Consensus 1 m~~~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (523)
|+.| ++|+||||+|||++|+++||.+|+++++.+++++. +|.+||+||||++||+++++++++++ + .+
T Consensus 1 m~~m-m~~~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~-~~~~g~~eqdp~~~~~~~~~~i~~~~-~--------~~- 68 (482)
T 3h6e_A 1 MSLS-TGATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIP-LEIDGIRRLDAPDTGRWLLDVLSRYA-D--------HP- 68 (482)
T ss_dssp --------CEEEEECSSEEEEEEECTTSCEEEEEEEECCC-EESSSCEECCHHHHHHHHHHHHHHTT-T--------SC-
T ss_pred Cchh-hceEEEEEcCCCCeEEEEEECCCcEEEEEEecCCc-ccCCCceeECHHHHHHHHHHHHHHHH-h--------cC-
Confidence 6666 46899999999999999999999999999999985 68999999999999999999998875 3 36
Q ss_pred ceEEEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCcc--ChHHHHHHHhhcCh
Q 009868 81 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTY--FSAVKLLWMMENVD 158 (523)
Q Consensus 81 I~aIgis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~--~~~~kl~wl~~~~p 158 (523)
|.+|||++|++++++|| +|+|++|+|+|+|.|+.++++++.+.. + .+++||++++++ ++++||+|+++|+|
T Consensus 69 I~aIgis~~~~~~v~~D--~G~pl~~ai~w~D~R~~~~~~~l~~~~--~---~~~~tG~~~~~~~~~~~~kl~Wl~~~~P 141 (482)
T 3h6e_A 69 VTTIVPVGHGAGIAALT--DGRLAFPPLDYEQSIPEAVMADYRSQR--D---PFARTGSPALPDGLNIGSQLWWLDQLHP 141 (482)
T ss_dssp CCEEEEEECSSCEEEEE--TTEECSCCBCTTSCCCHHHHHHHHTTC--C---CHHHHCCCCCSTTSSHHHHHHHHHHHSH
T ss_pred CCEEEEecCcCCEEEEC--CCCEeccccccCCcccHHHHHHHHhhC--h---HHHHhCCCCCCCchhHHHHHHHHHHcCc
Confidence 99999999999999999 699999999999999999999998763 2 279999999997 89999999999999
Q ss_pred HHHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecch-hcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccc
Q 009868 159 AVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSN-ASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIG 237 (523)
Q Consensus 159 e~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~-As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G 237 (523)
|+|++++ |++++|||.|+||| ++++|+|+ ||+|+|||+++++|+ ++|+.+||+ ++||+|+++++++|
T Consensus 142 e~~~~~~-----~l~~~dyl~~~LTG-----~~~td~s~~As~t~l~d~~~~~W~-~ll~~~gi~-~~LP~v~~~~~~~G 209 (482)
T 3h6e_A 142 DVMANAT-----LLPWAQYWAWFLTG-----RAVSEVTSLGCHSDLWDPQDGDFS-PMAKRLGWA-ARFAPIVRAGDTVG 209 (482)
T ss_dssp HHHHSCE-----EEEHHHHHHHHTTS-----CCCEEHHHHTTTCSSEETTTTEEC-HHHHHTTCG-GGBCCEECTTSEEE
T ss_pred hhhhcCE-----EEccHHHHHHHHhC-----CeeeecchhhhccCCccCCcCcHH-HHHHHcCCH-HhCCCCcCCCceee
Confidence 9999873 88899999999999 88999998 899999999999999 599999998 99999999999999
Q ss_pred cccc------CCCCCCCcEEEeccchhhhhhc---CCC-CCCC-eEEEecCceeeeeecCc---c-ccccC-CCceeeee
Q 009868 238 KIGK------GWPITGIPISGCLGDQHAAMLG---QAC-KKGE-AKSTYGTGAFILMNTGE---E-VVKSK-HGLLSTLA 301 (523)
Q Consensus 238 ~v~~------~~l~~g~pV~~g~gD~~aa~~g---~g~-~~g~-~~~~~GTs~~~~~~~~~---~-~~~~~-~~~~~~~~ 301 (523)
+++. | |++|+||++|++|++|+++| +|+ ++|+ +++++|||.++. ++.+ + |..++ .+++ +
T Consensus 210 ~l~~~~A~~~G-L~~g~pV~~g~~D~~aa~lG~~g~g~~~~g~~~~~s~GT~~~~~-~~~~~~~~~~~~~~~~~~~---~ 284 (482)
T 3h6e_A 210 ALLPAIAERTG-LSPDVQVLAGLHDSNAALLAARGFAEIADNEATVLSTGTWFIAM-RLPATPVDTATLPEARDCL---V 284 (482)
T ss_dssp ECCHHHHHHHT-CCTTCEEECCEEHHHHHHHHHTTSTTTTTSSEEEEECSSSEEEE-EECSSCCCGGGCCGGGTEE---E
T ss_pred eeCHHHHHHhC-CCCCCEEEEeCcHHHHHHhhhhccCCcCCCCEEEEECCceeEEE-EecCccCCccccchhhcee---e
Confidence 9974 5 88999999999999999999 999 9997 589999997753 3433 3 33332 2332 1
Q ss_pred eecCCCCCceeEeccchhchhHHHHHHHHHcCCCCC--HHHHHHHHHhc-CCCCceEEEcCCCCCCCCCCCCCCceeEEc
Q 009868 302 FKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISS--ASEIEELALQV-NSTGGVYFVPAFNGLFAPWWRDDARGVCIG 378 (523)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~--~~~l~~~a~~~-~~~~gl~~~P~l~G~r~P~~~~~arg~~~g 378 (523)
+.. ...|.+++...++|.+++|+++......+ ++..+..+... ++++|++|+|||+|+|+|+||+ ||+|+|
T Consensus 285 ~~~----~~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~a~~~~~g~~Gl~flP~l~Ger~P~~d~--rG~~~G 358 (482)
T 3h6e_A 285 NVD----VHGRPVPSARFMGGREIETLIEIDTRRVDIKPDQPALLAAVPEVLRHGRMILPTLMRGFGPYPHG--RFAWIN 358 (482)
T ss_dssp EEC----TTSCEEEEEEECHHHHHHHHHCSGGGCTTCGGGHHHHHHTHHHHHHTTCEEESCSSTTCSSCTTC--CCEEES
T ss_pred ccc----cccccccchhhhhHHHHHHHHHhcccccccccchhhHHHhccccCCCCeEEecCCCCCCCCCCCC--ceEEeC
Confidence 211 12356677778899999999764432211 23333333322 5889999999999999999987 999999
Q ss_pred CCCCCCHHHHHHHHHhh--hhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhh-cCCceeecCC
Q 009868 379 ITRFTSKAHIARAVLES--MCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADL-LGSPVIRPAD 455 (523)
Q Consensus 379 l~~~~~~~~l~rAv~Eg--ia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Adv-lg~pv~~~~~ 455 (523)
|+. +|++||++|+ |||++|++++.|++ .++|+++||++||++|+||+||| ||+||++++.
T Consensus 359 l~~----~~l~RA~lE~~Gia~~~r~~l~~~~~-------------~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~~ 421 (482)
T 3h6e_A 359 RPE----DWFERRAAACLYAALVADTALDLIGS-------------TGRILVEGRFAEADVFVRALASLRPDCAVYTANA 421 (482)
T ss_dssp CCS----SHHHHHHHHHHHHHHHHHHHHHHTTC-------------CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEESS
T ss_pred CCH----HHHHHHHHHHHhHHHHHHHHHHHhcC-------------CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcCC
Confidence 998 7999999995 99999999998853 46899999999999999999999 9999999999
Q ss_pred CCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCC---HHHHHHHHHHHHHHHHHH
Q 009868 456 IETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLN---EEFRKKKAESWCRAVERT 515 (523)
Q Consensus 456 ~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~---~~~~~~~y~~~~~~~~~~ 515 (523)
.|++|+|||++|+++.-. .....+.|... ...+.+.+++|+++++.-
T Consensus 422 ~e~~alGAA~lA~~a~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 471 (482)
T 3h6e_A 422 HNDVSFGALRLIDPGLRP-------------QGELVRIEPLDTGSWADLDTYRNRWQAEVEAA 471 (482)
T ss_dssp CCCTTGGGHHHHCTTCCC-------------SSCEEECCCCCC----CHHHHHHHHHHHHC--
T ss_pred CchHHHHHHHHhCccccc-------------ccccCcccccccccchHHHHHHHHHHHHhhcC
Confidence 999999999999987311 12344555554 123445577899887663
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-82 Score=673.47 Aligned_cols=465 Identities=19% Similarity=0.228 Sum_probs=382.0
Q ss_pred cCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeee----eccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT----QFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDS 79 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~----~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (523)
|.++++||||+|||++|++|+|.+|+++...+.++. ..+|.+||.|||+++||+++.++++++... ..+
T Consensus 1 m~~~~~lgiDiGtts~k~~l~d~~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~-------~~~ 73 (489)
T 2uyt_A 1 MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA-------GIA 73 (489)
T ss_dssp -CCEEEEEEEECSSEEEEEEEEEEGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT-------TCC
T ss_pred CCcceEEEEEecCCCceEEEEEecCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC-------CCC
Confidence 345689999999999999999999998887766554 235789999999999999999999887642 247
Q ss_pred CceEEEEccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChH
Q 009868 80 GLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDA 159 (523)
Q Consensus 80 ~I~aIgis~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe 159 (523)
|.+|||++||+++++||+ +|+|++|+|.|+|.|+.++++++.+.. +.++++++||+++++.++++||+|+++|+||
T Consensus 74 -i~~Igis~q~~~~v~~D~-~G~~l~~~i~w~D~R~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~ 149 (489)
T 2uyt_A 74 -IDSIGIDTWGVDFVLLDQ-QGQRVGLPVAYRDSRTNGLMAQAQQQL--GKRDIYQRSGIQFLPFNTLYQLRALTEQQPE 149 (489)
T ss_dssp -CCEEEEEECSSCEEEECT-TSCEESCCBCTTCGGGTTHHHHHHHHH--CHHHHHHHHCCCCCTTSHHHHHHHHHHHCGG
T ss_pred -ceEEEEecCcccEEEECC-CCCCccCCccccCCccHHHHHHHHHhc--CHHHHHHHhCCCCCCccHHHHHHHHHhcCch
Confidence 999999999999999999 799999999999999999999998874 4578999999999999999999999999999
Q ss_pred HHHHHhcCCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCcccccc
Q 009868 160 VKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKI 239 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v 239 (523)
+|+++++ ++.++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|++
T Consensus 150 ~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~ 220 (489)
T 2uyt_A 150 LIPHIAH----ALLMPDYFSYRLTG-----KMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHW 220 (489)
T ss_dssp GGGGCCE----EEEHHHHHHHHHHS-----CCCCBHHHHGGGTCEETTTTEECHHHHHHHTCCGGGSCCCBCTTCEEEEE
T ss_pred HHHHhhh----ccCcHHHHHHHHhC-----CccceehhhhhhcccccCcCccCHHHHHHcCCCHHHCCCccCCCcceeee
Confidence 9999875 88899999999999 89999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCcEEE-eccchhhhhhcCCC-CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccc
Q 009868 240 GKGWPITGIPISG-CLGDQHAAMLGQAC-KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGS 317 (523)
Q Consensus 240 ~~~~l~~g~pV~~-g~gD~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (523)
+.. ..+|+||++ |++|++|+++|+|+ ++|++++++|||+++...++ .|..++..+...+.+. +..++.|.+++.
T Consensus 221 ~~~-~~~g~pV~~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 296 (489)
T 2uyt_A 221 ICP-QGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQ-TPFTNDTALAANITNE--GGAEGRYRVLKN 296 (489)
T ss_dssp ECT-TCCEEEEECCCCBHHHHHHHHSCCCSTTEEEEEESSSEEEEEEES-SCCCSHHHHHHTCEEE--CCGGGCEEEEEE
T ss_pred ecc-cCCCCcEEEECchHHHHHHhcCCCCCCCcEEEEEchHhhcccccC-CCccCHHHHhhcceee--cCCCCeEEEehh
Confidence 643 337899998 88999999999999 99999999999998765553 3433321111111111 123678888877
Q ss_pred hhchhHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCC-----CceeEEcC--CCCCCHHH
Q 009868 318 IAIAGAAVQWLRDSLGI---ISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDD-----ARGVCIGI--TRFTSKAH 387 (523)
Q Consensus 318 ~~~~G~~l~w~~~~~~~---~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~-----arg~~~gl--~~~~~~~~ 387 (523)
+. | .|+++.+.. .+.|+++.+.++..|++++ +|+| ++.|+|+|+ .+|.|.|+ +..|+++|
T Consensus 297 ~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~~-l~~p----~~~~~~~p~~~~~~~~g~~~g~~~~~~~t~~~ 366 (489)
T 2uyt_A 297 IM--G---LWLLQRVLQERQINDLPALIAATQALPACRF-IINP----NDDRFINPDEMCSEIQAACREMAQPIPESDAE 366 (489)
T ss_dssp EC--T---THHHHHHHHHTTCCCHHHHHHHHTTSCSSSS-CCCT----TSGGGSSCSCHHHHHHHHHHHTTCCCCCSHHH
T ss_pred Hh--H---HHHHHHhhcccchhhHHHHHHHhccCCCcCe-eECC----CCCccCChhhhHHHHHHHHHhcCCCCCCCHHH
Confidence 54 2 588876521 2457777776644567654 4788 477888887 48899888 47899999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHH
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAA 467 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA 467 (523)
|+||++|||||++|++++.|++..|.+ +++|+++||++||++|+||+||+||+||+++. .|++++|||++|
T Consensus 367 l~RAvlEgia~~~r~~~~~l~~~~g~~--------~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~-~e~~alGaa~~A 437 (489)
T 2uyt_A 367 LARCIFDSLALLYADVLHELAQLRGED--------FSQLHIVGGGCQNTLLNQLCADACGIRVIAGP-VEASTLGNIGIQ 437 (489)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC--------CSEEEEESGGGGCHHHHHHHHHHHTSEEEECC-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCChhhhHHHHHHHHHHHCCeeecCC-ccHhHHHHHHHH
Confidence 999999999999999999998766777 89999999999999999999999999999876 799999998888
Q ss_pred HHhcccc---CChhHHhcccCCCCCcEEeCCCCHH-HHH-HHHHHHHHHHH
Q 009868 468 GLAIGVF---KEEEIFDSGERTKTSTTFKPVLNEE-FRK-KKAESWCRAVE 513 (523)
Q Consensus 468 ~~~~G~~---~~~~~a~~~~~~~~~~~~~P~~~~~-~~~-~~y~~~~~~~~ 513 (523)
+.|.+.. +++.++++.+. ..++|+|+++++ +.| +.|++|+++.+
T Consensus 438 ~~a~~~~~~~~~~~~~~~~~~--~~~~~~P~~~~~~~~Y~~~~~~y~~~~~ 486 (489)
T 2uyt_A 438 LMTLDELNNVDDFRQVVSTTA--NLTTFTPNPDSEIAHYVALIHSTRQTKE 486 (489)
T ss_dssp HHHTTSCCCHHHHHHHHHHHS--CCEEECCCTTSHHHHHHHHTTC------
T ss_pred HHHcCccccHHHHHHHHHhhC--CCeEECCCcchHHHHHHHHHHHhhchhh
Confidence 7777654 44455555553 258999999988 776 45777776544
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-18 Score=164.93 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCC-CCCCHHHHHHHHHhhhhhH
Q 009868 321 AGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGIT-RFTSKAHIARAVLESMCFQ 399 (523)
Q Consensus 321 ~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~-~~~~~~~l~rAv~Egia~~ 399 (523)
+|..++|+.+.++. +++++++++.+.+ .|+..|+|++. .+++.++++. ..++++|++|+++|+|+++
T Consensus 131 tG~~le~~a~~lg~--~~~el~~la~~~~-------~p~~~~~~c~v---fa~s~v~~l~~~g~~~~di~~av~e~Va~~ 198 (270)
T 1hux_A 131 TGRFLDVMANILEV--KVSDLAELGAKST-------KRVAISSTCTV---FAESEVISQLSKGTDKIDIIAGIHRSVASR 198 (270)
T ss_dssp SHHHHHHHHHHHTC--CTTTHHHHHTTCC-------SCCCCCCCSHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCC--CHHHHHHHHhhCC-------CCCCcccccch---hHhHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 57899999998875 5788888886643 46777888863 3567777765 6889999999999999999
Q ss_pred HHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCC-ccHHHHHHHHHHh
Q 009868 400 VKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIE-TTALGAAFAAGLA 470 (523)
Q Consensus 400 ~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e-~~alGaA~lA~~~ 470 (523)
+... ++. .+. .++|+++||+++|+.|+|+++|+||+||.+++..+ ++|+|||++|+..
T Consensus 199 i~~~---~~~-~~~---------~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 199 VIGL---ANR-VGI---------VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHH---HHT-TCC---------CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHH---Hhc-CCC---------CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 8443 332 222 36799999999999999999999999999988777 6999999999764
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-08 Score=94.07 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=82.7
Q ss_pred chhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhH
Q 009868 320 IAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQ 399 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~ 399 (523)
.+|..++-+.+.++. +|++..+++....... | ++ .++..+- ....+.-+.....++|+++++++.++-.
T Consensus 128 g~G~f~d~~a~~l~~--~~~~~~~~~~~a~~~~-----~-i~-~~~~~f~--~s~~~~~~~~~~~~~di~a~~~~~v~~~ 196 (276)
T 4ehu_A 128 GTGRFLDVMAKIIEV--DVSELGSISMNSQNEV-----S-IS-STCTVFA--ESEVISHLSENAKIEDIVAGIHTSVAKR 196 (276)
T ss_dssp TSHHHHHHHHHHHTC--CGGGHHHHHTTCSSCC-----C-CC-CCSHHHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhcc--ChhhhHHHHhcCCCCC-----C-cC-Cccchhh--hhHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 357788877777775 5777766654432110 0 11 1110000 0000001223467899999999998766
Q ss_pred HHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHHh
Q 009868 400 VKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGLA 470 (523)
Q Consensus 400 ~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~~ 470 (523)
+.... .+. .. +++|+++||.++|+.+.+.+++.+|+++.++. ..+.+|+|||++|..-
T Consensus 197 l~~~~---~~~--~~--------~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~ 255 (276)
T 4ehu_A 197 VSSLV---KRI--GV--------QRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDE 255 (276)
T ss_dssp HHHHH---HHH--CC--------CSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHH
T ss_pred HHHHH---Hhc--cc--------CCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHH
Confidence 54432 221 12 67899999999999999999999999999987 4668899999998654
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-07 Score=88.54 Aligned_cols=70 Identities=26% Similarity=0.340 Sum_probs=54.6
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHH
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALG 462 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alG 462 (523)
...++++.+++.++..++..++. .+ . ++.|+++||+++++.+.+.+++.|+.||.++. ..+++|+|
T Consensus 201 ~~~~~~~~~~~~i~~~i~~~l~~----~~-~--------~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~G 267 (272)
T 3h1q_A 201 EIMRVVRPVIEKMALIVKEVIKN----YD-Q--------TLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLG 267 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT----SC-S--------SCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cC-C--------CCEEEEECCccchhhHHHHHHHHhCCCccccCChHHHHHHH
Confidence 45677777777776665554432 12 2 67899999999999999999999999998765 55789999
Q ss_pred HHHH
Q 009868 463 AAFA 466 (523)
Q Consensus 463 aA~l 466 (523)
||+.
T Consensus 268 aal~ 271 (272)
T 3h1q_A 268 IALF 271 (272)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 9975
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-08 Score=100.00 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=75.6
Q ss_pred cccCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCc
Q 009868 2 AKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGL 81 (523)
Q Consensus 2 ~~~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I 81 (523)
+|+|+.|+||||+|+|++|++++|.+|+++.+.+.+++. +++++++++.+.+.+++++++ .+.+..+ |
T Consensus 1 ~~~m~~~~lgiDiggt~~~~~l~d~~g~il~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~-i 68 (326)
T 2qm1_A 1 SNAMDKKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNI--------LEDGKHIVPSIIESIRHRIDL---YNMKKED-F 68 (326)
T ss_dssp CCGGGCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCC--------TTTTTTHHHHHHHHHHHHHHH---TTCCGGG-E
T ss_pred CCCcccEEEEEEECCCEEEEEEECCCCCEEEEEEEcCCC--------CCCHHHHHHHHHHHHHHHHHH---cCCCccc-e
Confidence 366678999999999999999999999999888777652 356788999999999999877 4555668 9
Q ss_pred eEEEEccccceeEEeeCCCCccc-ccccccccc
Q 009868 82 KAIGLTNQRETTVLWSKSTGCPL-YNAIVWMDA 113 (523)
Q Consensus 82 ~aIgis~~~~~~v~~d~~~g~~l-~~~i~w~D~ 113 (523)
.+|||+.. .++|.++|..+ .|.+.|.+.
T Consensus 69 ~~igi~~p----G~vd~~~g~v~~~~~l~w~~~ 97 (326)
T 2qm1_A 69 VGIGMGTP----GSVDIEKGTVVGAYNLNWTTV 97 (326)
T ss_dssp EEEEEEES----SEEETTTTEEECBGGGTBCSC
T ss_pred eEEEEecc----cceeCCCCEEEecCCCCccCC
Confidence 99999884 47787567665 344568654
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.1e-07 Score=94.73 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=74.1
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
...|++|||+|+|++|++++|.+|+++.+.+.+++ .++++++++.+.+.+++++++ .+.+..+ |.+|
T Consensus 106 ~~~~~lGIDiGgt~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~-i~gi 172 (429)
T 1z05_A 106 LGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFFQT---YAAQLDR-VTSI 172 (429)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTSCEEEEEEEECC---------CCBHHHHHHHHHHHHHHHHHH---TTTTCCE-EEEE
T ss_pred CCCEEEEEEECCCEEEEEEECCCCCEEEEEEEcCC---------CCCHHHHHHHHHHHHHHHHHh---cCCCcCc-eEEE
Confidence 45689999999999999999999999988777654 246899999999999999877 4555667 9999
Q ss_pred EEccccceeEEeeCCCCccc-cccccccccC
Q 009868 85 GLTNQRETTVLWSKSTGCPL-YNAIVWMDAR 114 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l-~~~i~w~D~R 114 (523)
||+.. .++|.++|..+ .|.+.|.+..
T Consensus 173 gi~~p----G~vd~~~g~v~~~~~l~w~~~~ 199 (429)
T 1z05_A 173 AITLP----GLVNSEQGIVLQMPHYNVKNLA 199 (429)
T ss_dssp EEEES----SEEETTTTEEEECSSSBCSSBC
T ss_pred EEecc----CcEeCCCCeEeecCCCCCCCCC
Confidence 99884 37787567665 3555687653
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-07 Score=94.32 Aligned_cols=93 Identities=10% Similarity=0.070 Sum_probs=72.6
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
...|++|||+|+|++|++++|.+|+++.+.+.+++ .+++++++++.+.+.+++++++. +.+..+ |.+|
T Consensus 85 ~~~~~lGIDiGgt~i~~~l~d~~G~vl~~~~~~~~--------~~~~~~~~~~~l~~~i~~~~~~~---~~~~~~-i~gi 152 (380)
T 2hoe_A 85 NCAYVLGIEVTRDEIAACLIDASMNILAHEAHPLP--------SQSDREETLNVMYRIIDRAKDMM---EKLGSK-LSAL 152 (380)
T ss_dssp GGCEEEEEEECSSEEEEEEEETTCCEEEEEEEECC--------SSCCHHHHHHHHHHHHHHHHHHH---HHTTCC-CCEE
T ss_pred CCCeEEEEEECCCEEEEEEECCCCCEEEEEEEccC--------CCCCHHHHHHHHHHHHHHHHHhc---CCCcCc-EEEE
Confidence 45689999999999999999999999988777665 23579999999999999998763 233457 9999
Q ss_pred EEccccceeEEeeCCCCccc-ccccccccc
Q 009868 85 GLTNQRETTVLWSKSTGCPL-YNAIVWMDA 113 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l-~~~i~w~D~ 113 (523)
||+..+ ++|.++|..+ .+.+.|.+.
T Consensus 153 gi~~pG----~vd~~~g~v~~~~~l~w~~~ 178 (380)
T 2hoe_A 153 TVAAPG----PIDTERGIIIDPRNFPLSQI 178 (380)
T ss_dssp EEEESS----CEETTTTEECCCSSCTTBTS
T ss_pred EEEeec----cEECCCCEEeccCCCCCcCC
Confidence 998844 6786567765 344568654
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-07 Score=95.07 Aligned_cols=93 Identities=8% Similarity=0.091 Sum_probs=72.2
Q ss_pred cCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
+...|++|||+|+|++|++++|.+|+++.+.+.+++ +++++++++.+.+.+++++++ .+.+..+ |.+
T Consensus 82 ~~~~~~lgiDiG~t~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~-i~g 148 (406)
T 1z6r_A 82 TEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA---------LKDDLPLLDRIISHIDQFFIR---HQKKLER-LTS 148 (406)
T ss_dssp CTTCEEEEEEEETTEEEEEEEETTCCEEEEEEEECC---------SSCSSCHHHHHHHHHHHHHHH---TGGGCCC-EEE
T ss_pred CCccEEEEEEEcCCEEEEEEEcCCCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHHh---cCCCcCc-eeE
Confidence 345689999999999999999999999988776653 357788999999999999876 3444567 999
Q ss_pred EEEccccceeEEeeCCCCcccc-ccc-ccccc
Q 009868 84 IGLTNQRETTVLWSKSTGCPLY-NAI-VWMDA 113 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~-~~i-~w~D~ 113 (523)
|||+..+ ++|.++|..+. +.+ .|.+.
T Consensus 149 igi~~pG----~vd~~~g~v~~~~~l~~w~~~ 176 (406)
T 1z6r_A 149 IAITLPG----IIDTENGIVHRMPFYEDVKEM 176 (406)
T ss_dssp EEEEESS----EEETTTTEEEECTTCTTCSSB
T ss_pred EEEEeec----CEeCCCCEEecCCCCCCccCC
Confidence 9999844 77875677663 334 57654
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.3e-07 Score=88.95 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=66.9
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|++|||+|+|++|++++|.+|+++.+.+.+++ ..+++++++.+.+.++++..+. .. +.+|||+
T Consensus 25 ~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~~-------~~-~~gigi~ 87 (327)
T 4db3_A 25 MYYGFDVGGTKIEFGAFNEKLERVATERVPTP---------TDDYPLLLETIAGLVAKYDQEF-------AC-EGKIGLG 87 (327)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECC---------TTCHHHHHHHHHHHHHHHHHHH-------TS-CCEEEEE
T ss_pred EEEEEEECCCEEEEEEEeCCCcEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHHhc-------CC-ccEEEEE
Confidence 79999999999999999999999988777664 2378999999999998887652 24 7788888
Q ss_pred cccceeEEeeCCCCcccccccccc
Q 009868 88 NQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
. ..++|.++|....+.+.|.
T Consensus 88 ~----pG~vd~~~g~v~~~~~~~~ 107 (327)
T 4db3_A 88 L----PGMEDADDATVLTVNVPAA 107 (327)
T ss_dssp E----SEEECTTTCCEEESSSGGG
T ss_pred e----eccEeCCCCEEEcCCCccc
Confidence 7 4478865787777766673
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-07 Score=90.97 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=66.6
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+|++|||+|+|++|++++|.+|+++.+.+.++ +++++++++.+.+.++++.++ .+ |.+|||
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~i~~~~~~~~----------~~~~~~~~~~i~~~i~~~~~~--------~~-i~gigi 62 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGRILSTFKVAT----------PPTAEGIVDAICAAVAGASEG--------HD-VEAVGI 62 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCBCCCEEEEC----------CSSHHHHHHHHHHHHHHHHTT--------CC-EEEEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEEEEeeC----------CCCHHHHHHHHHHHHHHHHhh--------cC-ceEEEE
Confidence 58999999999999999999999998776665 257899999999988887643 36 999999
Q ss_pred ccccceeEEeeCCCCcccc-ccccccccC
Q 009868 87 TNQRETTVLWSKSTGCPLY-NAIVWMDAR 114 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~-~~i~w~D~R 114 (523)
+.. .++|.++|.... |.+.|.+..
T Consensus 63 ~~p----G~vd~~~g~v~~~~~l~w~~~~ 87 (321)
T 3vgl_A 63 GAA----GYVDDKRATVLFAPNIDWRHEP 87 (321)
T ss_dssp EES----SEECTTSSCEEECSSSCCEEEC
T ss_pred ecc----ccEeCCCCEEEeCCCCCCcCCC
Confidence 884 477875666553 445787654
|
| >2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-06 Score=88.78 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=69.3
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
..|++|||+|+|++|++++|.+|+++.+.+.+++ ++++++++.+.+.+++++++.. ....+ |.+||
T Consensus 29 ~~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~----------~~~~~~~~~i~~~i~~~~~~~~---~~~~~-i~gig 94 (343)
T 2yhw_A 29 TLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNP----------KTYEERINLILQMCVEAAAEAV---KLNCR-ILGVG 94 (343)
T ss_dssp EEEEEEEEECSSEEEEEEEETTSCEEEEEEEECC----------SSHHHHHHHHHHHHHHHHHHHH---HTTEE-EEEEE
T ss_pred CcEEEEEEECCCEEEEEEECCCCcEEEEEEEcCC----------CCHHHHHHHHHHHHHHHHHhcc---cccCc-eEEEE
Confidence 4689999999999999999999999987666543 3688899999999998877632 23357 99999
Q ss_pred EccccceeEEeeCCCCcccc-ccc--cccccC
Q 009868 86 LTNQRETTVLWSKSTGCPLY-NAI--VWMDAR 114 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~-~~i--~w~D~R 114 (523)
|+..+ ++|.++|..+. +.+ .|.+..
T Consensus 95 i~~pG----~vd~~~g~v~~~~~~~~~w~~~~ 122 (343)
T 2yhw_A 95 ISTGG----RVNPREGIVLHSTKLIQEWNSVD 122 (343)
T ss_dssp EEESS----EEETTTTEEEECCTTSSSCSSEE
T ss_pred Eeccc----CEeCCCCEEEeCCcCCCCCcCCC
Confidence 99844 77875677664 323 576554
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.31 E-value=7.9e-07 Score=88.86 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=68.3
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
+..|+||||+|+|++|++++|.+|+++.+.+.+++ ...+++++++.+.+.++++++. ..+ |.+|
T Consensus 17 ~~~~~lgidiggt~i~~~l~d~~g~il~~~~~~~~--------~~~~~~~~~~~i~~~i~~~~~~-------~~~-i~gi 80 (321)
T 3r8e_A 17 FQGMILGIDVGGTSVKFGLVTPEGEIQNATRFMTA--------DWVNGIGFVESMKLEIGNFLKQ-------YPI-VKGV 80 (321)
T ss_dssp --CCEEEEECCSSEEEEEEECTTCCEEEEEEEEHH--------HHHTTTCHHHHHHHHHHHHHHH-------CTT-CCEE
T ss_pred cCcEEEEEEECCCEEEEEEEcCCCcEEEEEEEeCC--------CCCCHHHHHHHHHHHHHHHHhc-------cCC-eeEE
Confidence 45689999999999999999999999998877765 2346788898898888888752 236 8999
Q ss_pred EEccccceeEEeeCCCCcccccc-cc-ccccC
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNA-IV-WMDAR 114 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~-i~-w~D~R 114 (523)
||+.. .++|.++|..+.+. +. |.+..
T Consensus 81 gi~~p----G~vd~~~g~v~~~~~l~~w~~~~ 108 (321)
T 3r8e_A 81 GIGWP----GLVSLDRTKVILLPNIPSVVNVP 108 (321)
T ss_dssp EEEES----SEECTTSCCEEEBTTBCCCCSCC
T ss_pred EEEec----ccEECCCCEEEeCCCCccccCCC
Confidence 99884 47786578776443 43 87654
|
| >3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.27 E-value=4e-07 Score=90.57 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=64.9
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
...|++|||+|+|++|++++|.+|+++.+.+.+++ +.+++++++.+.+.+++++++. + .+ |.+|
T Consensus 5 ~~~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~~---~---~~-i~gi 68 (310)
T 3htv_A 5 QHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTA---------EVIAPGLVSGIGEMIDEQLRRF---N---AR-CHGL 68 (310)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSCEEEEEEEEHH---------HHHTTCHHHHHHHHHHHHHHHH---T---EE-EEEE
T ss_pred CCCEEEEEEeCCCEEEEEEECCCCCEEEEEEecCc---------cccHHHHHHHHHHHHHHHHHhc---C---CC-eeEE
Confidence 34689999999999999999999999987776654 2234567778888887776552 1 25 8999
Q ss_pred EEccccceeEEeeCCCCcccc-ccccccc
Q 009868 85 GLTNQRETTVLWSKSTGCPLY-NAIVWMD 112 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~-~~i~w~D 112 (523)
||+.. .++|.++|..+. |.+.|.+
T Consensus 69 gi~~p----G~vd~~~g~v~~~~~l~~~~ 93 (310)
T 3htv_A 69 VMGFP----ALVSKDKRTIISTPNLPLTA 93 (310)
T ss_dssp EEEES----SCBCTTSSCBCSCCSSSCCH
T ss_pred EEecc----ccEeCCCCEEEeCCCCCCcc
Confidence 99884 467875677664 4456764
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-06 Score=85.09 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcc-cCceE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVD-SGLKA 83 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~I~a 83 (523)
|++|+||||+|+|++|++++|.+|+++.+.+.+.. .+.+++++++++.+.+.+++++++ .+.+++ + |.+
T Consensus 4 M~~~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~~-i~g 73 (347)
T 2ch5_A 4 MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLST------NHWLIGTDKCVERINEMVNRAKRK---AGVDPLVP-LRS 73 (347)
T ss_dssp SSCEEEEEEECTTCEEEEEEETTSCEEEEEEECCC------CHHHHCHHHHHHHHHHHHHHHHHH---HTCCTTCC-BSE
T ss_pred cceEEEEEEcCccceEEEEEeCCCCEEEEEeCCCC------CcccCCHHHHHHHHHHHHHHHHHh---cCCCcccc-eeE
Confidence 44599999999999999999999999987665321 122468999999999999999876 344555 7 999
Q ss_pred EEEcccc
Q 009868 84 IGLTNQR 90 (523)
Q Consensus 84 Igis~~~ 90 (523)
|||+..+
T Consensus 74 igi~~pG 80 (347)
T 2ch5_A 74 LGLSLSG 80 (347)
T ss_dssp EEEEETT
T ss_pred EEEeccC
Confidence 9998844
|
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-06 Score=82.29 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=56.4
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCc--eEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGL--KAI 84 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I--~aI 84 (523)
.|++|||+|+|++|++++|.+|+++.+.+.+.. . ..++++++++.+.+.+++++++ .+.++++ | .+|
T Consensus 11 ~~~lGiDiGgT~i~~~l~d~~G~il~~~~~~~~------~-~~~~~~~~~~~l~~~i~~~l~~---~~~~~~~-i~~~~i 79 (305)
T 1zc6_A 11 RYLIGVDGGGTGTRIRLHASDGTPLAMAEGGAS------A-LSQGIAKSWQAVLSTLEAAFQQ---AGLPAAP-ASACAI 79 (305)
T ss_dssp CEEEEEEECSSCEEEEEEETTCCEEEEEEESCC------C-GGGCHHHHHHHHHHHHHHHHHH---TTCCCCC-GGGEEE
T ss_pred CEEEEEEcCccceEEEEEcCCCCEEEEEeCCCC------C-cccCHHHHHHHHHHHHHHHHHh---cCCChhh-hccceE
Confidence 489999999999999999999999987655321 0 1368999999999999999876 4555566 7 677
Q ss_pred EEcc
Q 009868 85 GLTN 88 (523)
Q Consensus 85 gis~ 88 (523)
||+.
T Consensus 80 gig~ 83 (305)
T 1zc6_A 80 GLGL 83 (305)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7766
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.6e-06 Score=81.90 Aligned_cols=86 Identities=17% Similarity=0.095 Sum_probs=61.9
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|++|||+|+|++|++++|.++ ++...+.+++ ..+++++++.+.+.+++++++. ..+ |.+|||+
T Consensus 2 ~~lgiDiGgt~i~~~l~d~~~-~l~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~~------~~~-i~gigi~ 64 (302)
T 3vov_A 2 KVVGLDLGGTKIAAGVFDGKR-LLSKVVVPTP---------KEGGERVAEALAEAAERAEREA------GVR-GEAIGLG 64 (302)
T ss_dssp CEEEEEECSSEEEEEEECSSS-BSCCEEEECC---------SSCHHHHHHHHHHHHHHHHHHH------TCC-CSSEEEE
T ss_pred EEEEEEEcCCEEEEEEEeCCC-cEEEEEEcCC---------CCChHHHHHHHHHHHHHHHhhc------cCC-ceEEEEE
Confidence 789999999999999999884 5555566554 2345789999999998887652 246 8889998
Q ss_pred cccceeEEeeCCCCcccc-ccc-cccccC
Q 009868 88 NQRETTVLWSKSTGCPLY-NAI-VWMDAR 114 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~-~~i-~w~D~R 114 (523)
.. .++|.++|.... +.+ .|.+..
T Consensus 65 ~p----G~vd~~~g~v~~~~~~~~w~~~~ 89 (302)
T 3vov_A 65 TP----GPLDFRRGVIRFAPNIPGVQDFP 89 (302)
T ss_dssp ES----SCEETTTTEEC---CCTTCTTCC
T ss_pred ec----ccEeCCCCEEEcCCCCCCcCCCC
Confidence 73 477875676663 334 576643
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.1e-06 Score=80.51 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=57.8
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|++|||+|+|++|++++|.+|+++.+.+.+++ ..+++++++.+.+ .+++ ..+ |.+|||+
T Consensus 5 ~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~~i~~----~~~~-------~~~-i~gigi~ 63 (297)
T 4htl_A 5 KIAAFDIGGTALKMGVVLPHGEIILTKSAEIS---------GSDGDQILAEMKV----FLAE-------NTD-VTGIAVS 63 (297)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECS---------TTCHHHHHHHHHH----HHHT-------CTT-CCEEEEE
T ss_pred EEEEEEeCCCeEEEEEECCCCCEEEEEEecCC---------CCCHHHHHHHHHH----HHhh-------cCC-eeEEEEe
Confidence 79999999999999999999999988777654 1245555555443 3322 136 8999999
Q ss_pred cccceeEEeeCCCCccccc-cc-ccccc
Q 009868 88 NQRETTVLWSKSTGCPLYN-AI-VWMDA 113 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~-~i-~w~D~ 113 (523)
.. .++|.++|..+.+ .+ .|.+.
T Consensus 64 ~p----G~vd~~~g~v~~~~~l~~w~~~ 87 (297)
T 4htl_A 64 AP----GYVNPKTGLITMGGAIRRFDNF 87 (297)
T ss_dssp ES----SEECTTTCEEEECTTCGGGTTE
T ss_pred cC----cceeCCCCEEEeCCCCCCccCC
Confidence 84 4788757877654 33 47764
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=97.94 E-value=9.4e-05 Score=72.03 Aligned_cols=140 Identities=14% Similarity=0.012 Sum_probs=88.1
Q ss_pred chhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCCCCCCCceeEEc-----CCCCCCHHHHHHH
Q 009868 317 SIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIG-----ITRFTSKAHIARA 391 (523)
Q Consensus 317 ~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~g-----l~~~~~~~~l~rA 391 (523)
+...+|..++-.+..++. .+++++.++|.+-..++-=+.+-.+.|...+.-..+...+.|| +....+++|++++
T Consensus 137 ~aaGgGtFl~l~a~ll~~-~~~~el~~lA~~g~~~~vDl~v~DIy~~~~~~l~~~s~as~Fgk~~~l~~~g~~~eDIaas 215 (287)
T 2ews_A 137 IGTGGGMIQGLGYLLSQI-TDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFGHVLHHLDADFTPSNKLAA 215 (287)
T ss_dssp ESCSHHHHHHHHHHHHCC-CCHHHHHHHHTTCCCTTTCEETTTC-------CCTTSEEETTTTGGGCTTSCCCHHHHHHH
T ss_pred cccchhhHHHHHHHHhCC-CCHHHHHHHHHcCCccccccchhhhcCCCCCCcCcchhhHHHHHHHHHHhCCCCHHHHHHH
Confidence 333467777777766663 3799999998543111100111111111001111222233222 2335789999999
Q ss_pred HHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecC-ccccHHHHHHHHhh---cCCceeecCCCC-ccHHHHHHH
Q 009868 392 VLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGG-ATVNNLLMQIQADL---LGSPVIRPADIE-TTALGAAFA 466 (523)
Q Consensus 392 v~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG-~a~s~~~~qi~Adv---lg~pv~~~~~~e-~~alGaA~l 466 (523)
++.+|+..+-.+.....+ ..+ +++|+++|| .+.|+.+++.+.+. ++.++.+++..+ .+|+|||+.
T Consensus 216 l~~sV~~~I~~la~~~a~--~~~--------i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~ 285 (287)
T 2ews_A 216 VIGVVGEVVTTMAITVAR--EFK--------TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYL 285 (287)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTT--------CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH--hCC--------CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHh
Confidence 999998887666543322 234 678999999 89999999999998 588999888655 689999986
Q ss_pred H
Q 009868 467 A 467 (523)
Q Consensus 467 A 467 (523)
|
T Consensus 286 ~ 286 (287)
T 2ews_A 286 E 286 (287)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.9e-06 Score=83.28 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=65.3
Q ss_pred CcccCCceEEEEecCCCCceEEEEcCCCCEEEEE-EeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 009868 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQARPIGSH-QVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDS 79 (523)
Q Consensus 1 m~~~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~-~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (523)
|-++...|++|||+|+|++|++++| +|+++.+. +.+++ .. +++++++.+.+.+. +++++ .. .+
T Consensus 3 ~~n~d~~~~lgiDIGgt~i~~~l~d-~G~il~~~~~~~~~--------~~-~~~~~l~~i~~~~~-~i~~~----~~-~~ 66 (366)
T 3mcp_A 3 MYTNDNRIVMTLDAGGTNFVFSAIQ-GGKEIADPVVLPAC--------AD-CLDKCLGNLVEGFK-AIQAG----LP-EA 66 (366)
T ss_dssp TTTTCCCEEEEEECSSSEEEEEEEE-TTEECSCCEEEECC--------TT-CHHHHHHHHHHHHH-HHHTT----CS-SC
T ss_pred cCCCCCCEEEEEEECcceEEEEEEE-CCEEEEEEEEEECC--------CC-CHHHHHHHHHHHHH-HHHHH----hh-cC
Confidence 3456678999999999999999999 99998766 55554 12 78888887777322 22221 11 46
Q ss_pred CceEEEEccccceeEEeeCCCCcccc-ccc-ccc-ccC
Q 009868 80 GLKAIGLTNQRETTVLWSKSTGCPLY-NAI-VWM-DAR 114 (523)
Q Consensus 80 ~I~aIgis~~~~~~v~~d~~~g~~l~-~~i-~w~-D~R 114 (523)
|.+|||+. +.++|.++|..+. |.+ .|. +..
T Consensus 67 -i~gIGIav----PG~Vd~~~G~i~~~~nlp~w~~~~~ 99 (366)
T 3mcp_A 67 -PVAISFAF----PGPADYQAGIIGDLPNFPSFRGGVA 99 (366)
T ss_dssp -CCEEEEEC----CSSEETTTTEECCCTTCGGGTTCBC
T ss_pred -CeEEEEEe----cceEeCCCCEEEeCCCcccccCCCC
Confidence 99999998 4577875787764 344 687 543
|
| >2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=97.88 E-value=1.6e-05 Score=77.81 Aligned_cols=83 Identities=10% Similarity=0.088 Sum_probs=57.8
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|++|||+|.|++|++++|.+|+++.+.+.+++. ..+++++++.+.+.++++++ + +.+|||+
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~il~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~----------~-~~~igi~ 62 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTPA--------SQTPEALRDALSALVSPLQA----------H-AQRVAIA 62 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECCS--------SCCHHHHHHHHHHHHTTTGG----------G-CSEEEEE
T ss_pred eEEEEEeCCCEEEEEEECCCCCEEEEEEecCCC--------CCCHHHHHHHHHHHHHHHHh----------h-CCEEEEE
Confidence 689999999999999999999999887776541 23578877777766655432 2 4556666
Q ss_pred cccceeEEeeCCCCccccc-cc-ccccc
Q 009868 88 NQRETTVLWSKSTGCPLYN-AI-VWMDA 113 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~-~i-~w~D~ 113 (523)
. ..++|.++|..+.+ .+ .|.+.
T Consensus 63 ~----pG~vd~~~g~v~~~~~~~~w~~~ 86 (289)
T 2aa4_A 63 S----TGIIRDGSLLALNPHNLGGLLHF 86 (289)
T ss_dssp E----SSEEETTEEECSSGGGGGGGTTC
T ss_pred e----ccceeCCCCEEEeCCCCCcccCC
Confidence 6 33778645655533 33 37654
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=73.54 Aligned_cols=136 Identities=18% Similarity=0.067 Sum_probs=85.9
Q ss_pred chhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC-ceEEEcCCCCCCCC--CCCCCCceeEEcCC------CCCCHHHHHH
Q 009868 320 IAGAAVQWLRDSLGIISSASEIEELALQVNSTG-GVYFVPAFNGLFAP--WWRDDARGVCIGIT------RFTSKAHIAR 390 (523)
Q Consensus 320 ~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~-gl~~~P~l~G~r~P--~~~~~arg~~~gl~------~~~~~~~l~r 390 (523)
.+|..+.-.+ .+-...+++++.++|.+-...+ .+ .+=.+.|...| --..++..+-||-. ...+++|+++
T Consensus 206 GGGTflGL~~-lLtg~~~~dEl~~lA~~Gd~~~vDl-lV~DIYg~~y~~~gL~~~~~ASsFGk~~~~~~~~~~~~eDIa~ 283 (360)
T 2i7n_A 206 GGGTFLGLCC-LLTGCETFEEALEMAAKGDSTNVDK-LVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLAR 283 (360)
T ss_dssp SHHHHHHHHH-HHHCCCSHHHHHHHHHHCCGGGTSE-EHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHHTTCCHHHHHH
T ss_pred ccHhHHHHHH-HHhCCCCHHHHHHHHHcCCCCcccc-eeeecccCcccccCCCccceeehhhhHhhHhhhcCCCHHHHHH
Confidence 3455555444 4422368999999986531111 11 11111111100 01233344444433 2568999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecC-ccccHHHHHHHHhhcC------CceeecCCC-CccHHH
Q 009868 391 AVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGG-ATVNNLLMQIQADLLG------SPVIRPADI-ETTALG 462 (523)
Q Consensus 391 Av~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG-~a~s~~~~qi~Advlg------~pv~~~~~~-e~~alG 462 (523)
+++..|+..+..+.-...+..+ +++|+++|| .++|+..+++++..++ +++..++.. -.+|+|
T Consensus 284 gll~sVa~~I~~lA~l~A~~~~----------i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlG 353 (360)
T 2i7n_A 284 ATLVTITNNIGSIARMCALNEN----------IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVG 353 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC----------CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHH
Confidence 9999999998776533322223 568999999 9999999999999985 788877654 488999
Q ss_pred HHHHH
Q 009868 463 AAFAA 467 (523)
Q Consensus 463 aA~lA 467 (523)
||+.+
T Consensus 354 AaL~~ 358 (360)
T 2i7n_A 354 ALLEL 358 (360)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99975
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=97.84 E-value=5.4e-05 Score=75.58 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=59.6
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
..+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++++.+.+.++++..+. .. +.+||
T Consensus 23 ~~~~lgiDiGgt~i~~~l~d~~g~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~~-------~~-i~~ig 85 (327)
T 2ap1_A 23 NAMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTP---------HTSYSAFLDAVCELVEEADQRF-------GV-KGSVG 85 (327)
T ss_dssp CCEEEEEEECSSEEEEEEEETTCCEEEEEEEECC---------CSCHHHHHHHHHHHHHHHHHHH-------TS-CCEEE
T ss_pred CceEEEEEECCCEEEEEEEeCCCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHHhc-------CC-ccEEE
Confidence 3579999999999999999999999987776654 1257788888888888876542 24 77788
Q ss_pred EccccceeEEeeCCCCcccc
Q 009868 86 LTNQRETTVLWSKSTGCPLY 105 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~ 105 (523)
|+. ..++|.++|..+.
T Consensus 86 i~~----pG~vd~~~g~v~~ 101 (327)
T 2ap1_A 86 IGI----PGMPETEDGTLYA 101 (327)
T ss_dssp EEE----SSBSCCTTSCCBC
T ss_pred EEe----eeeEECCCCEEEc
Confidence 877 3367765676554
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=4.4e-05 Score=75.12 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=46.1
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALD 68 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~ 68 (523)
|++|||+|+|++|++++|.+|+++.+.+.+++ .+.+++++++++.+.+.++++++
T Consensus 3 ~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~~~ 57 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGNFIGEGSSGPG------NYHNVGLTRAIENIKEAVKIAAK 57 (299)
T ss_dssp CEEEEEECSSCEEEEEECTTSCEEEEEEESCC------CHHHHCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCcEEEEEEcCCCCEEEEEeCCCC------CcccCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999987766553 22356899999999998888764
|
| >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=97.73 E-value=6.7e-05 Score=72.65 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=58.4
Q ss_pred CceEEEEecCCCCceEEEEcCC-CCEEEE-EEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQ-ARPIGS-HQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~-g~i~~~-~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
..|++|||+|+|++|++++|.+ |+++.. .+.+++ ...+++++++.+.+.++++.++. . .... +.+
T Consensus 11 ~~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~--------~~~~~~~~~~~i~~~i~~~~~~~---~-~~~~-~~~ 77 (267)
T 1woq_A 11 NAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP--------QPATPESVAEAVALVVAELSARP---E-APAA-GSP 77 (267)
T ss_dssp CCCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC--------SSCCHHHHHHHHHHHHHHHHTST---T-CCCT-TCC
T ss_pred CCEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCC--------ccCCHHHHHHHHHHHHHHHHHhc---c-ccCc-cce
Confidence 3578999999999999999986 777743 233332 12468888888888888876531 1 1124 556
Q ss_pred EEEccccceeEEeeCCCCcccc-ccc--ccccc
Q 009868 84 IGLTNQRETTVLWSKSTGCPLY-NAI--VWMDA 113 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~-~~i--~w~D~ 113 (523)
|||+..+ ++| +|..+. |.+ .|.+.
T Consensus 78 igi~~pG----~v~--~g~v~~~~~l~~~w~~~ 104 (267)
T 1woq_A 78 VGVTFPG----IIQ--HGVVHSAANVDKSWLNT 104 (267)
T ss_dssp EEEEESS----CEE--TTEECCCTTSCGGGTTC
T ss_pred EEEEccc----eEc--CCEEEeCCCCCCCCCCC
Confidence 7777633 456 466654 333 47654
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00013 Score=79.08 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=65.1
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHH
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALG 462 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alG 462 (523)
.-+++++.+++.+.-.++..++.. +..+ .+++.|+++||++++|.+.+++.+.||+++.+.. ..++.|+|
T Consensus 304 ~~e~l~~~~~~~i~~~v~~~L~~a----~~~~-----~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~G 374 (605)
T 4b9q_A 304 KLESLVEDLVNRSIEPLKVALQDA----GLSV-----SDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIG 374 (605)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHT----TCCG-----GGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc----CCCH-----HHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHh
Confidence 345677778888877777766543 3221 1289999999999999999999999999987744 67899999
Q ss_pred HHHHHHHhccccCC
Q 009868 463 AAFAAGLAIGVFKE 476 (523)
Q Consensus 463 aA~lA~~~~G~~~~ 476 (523)
||+.|+.-.|..++
T Consensus 375 Aai~a~~l~~~~~~ 388 (605)
T 4b9q_A 375 AAVQGGVLTGDVKD 388 (605)
T ss_dssp HHHHHHHHHTSSCS
T ss_pred HHHHHHHhcCCCCc
Confidence 99999987775443
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=71.94 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=55.0
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+++|||+|+|++|++++|.+|+++.+.+.+++ .+++++.+.+.+.+++ .+ |.+|||+
T Consensus 5 ~~lgidiggt~i~~~l~d~~g~il~~~~~~~~----------~~~~~~~~~i~~~i~~------------~~-i~gigi~ 61 (292)
T 2gup_A 5 TIATIDIGGTGIKFASLTPDGKILDKTSISTP----------ENLEDLLAWLDQRLSE------------QD-YSGIAMS 61 (292)
T ss_dssp CEEEEEEETTEEEEEEECTTCCEEEEEEECCC----------SSHHHHHHHHHHHHTT------------SC-CSEEEEE
T ss_pred EEEEEEECCCEEEEEEECCCCCEEEEEEEeCC----------CCHHHHHHHHHHHHHh------------CC-CcEEEEE
Confidence 58999999999999999999999987665442 3566666555544332 25 8889988
Q ss_pred cccceeEEeeCCCCcccc-cccc-cccc
Q 009868 88 NQRETTVLWSKSTGCPLY-NAIV-WMDA 113 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~-~~i~-w~D~ 113 (523)
. ..++|.++|..+. +.+. |.+.
T Consensus 62 ~----pG~vd~~~g~v~~~~~~~~~~~~ 85 (292)
T 2gup_A 62 V----PGAVNQETGVIDGFSAVPYIHGF 85 (292)
T ss_dssp E----SSEECTTTCBEESCCSSGGGSSS
T ss_pred e----cCcccCCCCEEEecCCCCcccCC
Confidence 8 3477875676653 3333 5443
|
| >3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00017 Score=67.83 Aligned_cols=69 Identities=14% Similarity=0.037 Sum_probs=44.9
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
+.+++|||+|+|++| ++|.+|++ ..+.+++ ...+++++.+.+.+ ++++ .+ +.+||
T Consensus 5 ~~~~lgiDIGGT~i~--~~d~~g~~--~~~~~t~--------~~~~~~~~~~~i~~----~i~~--------~~-i~gig 59 (226)
T 3lm2_A 5 DQTVLAIDIGGSHVK--IGLSTDGE--ERKVESG--------KTMTGPEMVAAVTA----MAKD--------MT-YDVIA 59 (226)
T ss_dssp GCCEEEEEECSSEEE--EEETTTCC--EEEEECC--------TTCCHHHHHHHHHH----HTTT--------CC-CSEEE
T ss_pred CCEEEEEEECCCEEE--EEECCCCE--EEEEECC--------CCCCHHHHHHHHHH----HHHh--------CC-CCEEE
Confidence 357999999999999 57888886 2344443 12456666655544 3322 15 88899
Q ss_pred EccccceeEEeeCCCCccc
Q 009868 86 LTNQRETTVLWSKSTGCPL 104 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l 104 (523)
|+. +.++|. ++..+
T Consensus 60 i~~----pG~Vd~-~~~~~ 73 (226)
T 3lm2_A 60 MGY----PGPVVH-NKPLR 73 (226)
T ss_dssp EEE----SSCEET-TEECS
T ss_pred EEE----EeEEEC-CeEEE
Confidence 988 446787 55444
|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00031 Score=68.83 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=49.4
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+++|||+|+|++|++++| +|+++.+.+.+.. .+ ...+++++++.+.+.++++.. .+..+ |.+|||+
T Consensus 1 ~~lgiDiGGT~~~~~l~d-~g~il~~~~~~~~--~~----~~~~~~~~~~~i~~~i~~~~~------~~~~~-i~~igig 66 (291)
T 1zbs_A 1 MILIGDSGSTKTDWCIAK-EGKSLGRFQTSGI--NP----FQQDRNEIDTALRSEVLPAIG------QKASS-IRAVYFY 66 (291)
T ss_dssp CEEEEEECSSEEEEEEEE-TTEEEEEEEEECC--CT----TTSCHHHHHHHHTTTTHHHHT------TSTTT-CCEEEEE
T ss_pred CEEEEEeCccceEEEEEe-CCeEEEEEECCCC--Cc----ccCCHHHHHHHHHHHHHHHhC------CCccc-ccEEEEE
Confidence 379999999999999999 9999987765432 01 123678888888877776532 22346 8888887
Q ss_pred ccc
Q 009868 88 NQR 90 (523)
Q Consensus 88 ~~~ 90 (523)
..+
T Consensus 67 ~pG 69 (291)
T 1zbs_A 67 GAG 69 (291)
T ss_dssp ETT
T ss_pred CCC
Confidence 743
|
| >1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00037 Score=71.06 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=51.5
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHH---HHHHHHHHHHHhhCCCCcccCceE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESV---RVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
++++|||+|+|++|++++|.+ +++.+.+.+++.... .+++++.+.+ .+.+.+++++ .+....+ |.+
T Consensus 2 ~~vlgidiGgt~ik~al~d~~-~il~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~---~~~~~~~-i~g 70 (381)
T 1saz_A 2 FRILTINPGSTSTKLSIFEDE-RMVKMQNFSHSPDEL------GRFQKILDQLEFREKIARQFVEE---TGYSLSS-FSA 70 (381)
T ss_dssp CEEEEEEECSSEEEEEEEETT-EEEEEEEEECCHHHH------HTCSSGGGGHHHHHHHHHHHHHT---TTCCGGG-CSE
T ss_pred CeEEEEECCccceeEEEEecc-hheeeeecccCcccc------cchhhHHHHHHHHHHHHHHHHHH---cCCCccC-ceE
Confidence 478999999999999999976 888887776642100 0111233333 5566666654 3444567 888
Q ss_pred EEEccccceeEEeeCCCCcc
Q 009868 84 IGLTNQRETTVLWSKSTGCP 103 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~ 103 (523)
| |+. +.++|..+|..
T Consensus 71 I-i~~----pG~vd~~~G~~ 85 (381)
T 1saz_A 71 F-VSR----GGLLDPIPGGV 85 (381)
T ss_dssp E-EEE----CCSCSCBCSSE
T ss_pred E-Eec----CCCCCCCCCce
Confidence 8 766 33567545654
|
| >2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00041 Score=70.52 Aligned_cols=84 Identities=13% Similarity=-0.031 Sum_probs=57.6
Q ss_pred CceEEEEecCCCCceEEEEcC----CCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCc
Q 009868 6 EVFIGAIDQGTTSTRFIIYDH----QARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGL 81 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~----~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I 81 (523)
++|++|||+|+|++|++++|. +|+++...+. ++ . .+++.+.+.+.+.++++.... +.+ |
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~-~~----~-----~~~~~~~~~i~~~i~~~~~~~------~~~-i 90 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREGKNDSVHACVTRYS-MK----R-----KDITEIIEFFNEIIELMPASV------MKR-V 90 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEE-CT----T-----CBGGGHHHHHHHHHHHSCHHH------HTT-E
T ss_pred CCeEEEEEEccccEEEEEEecccCCCccEEEEeee-cC----C-----CCHHHHHHHHHHHHHHHhhcc------ccc-c
Confidence 468999999999999999998 8998876541 11 1 356677777777776654321 235 8
Q ss_pred eEEEEccccceeEEeeCCCCccccccccccc
Q 009868 82 KAIGLTNQRETTVLWSKSTGCPLYNAIVWMD 112 (523)
Q Consensus 82 ~aIgis~~~~~~v~~d~~~g~~l~~~i~w~D 112 (523)
.+|||+.. .++|. |....+...|.+
T Consensus 91 ~gigi~~p----G~vd~--g~v~~~~~~~~~ 115 (373)
T 2q2r_A 91 KAGVINVP----GPVTG--GAVGGPFNNLKG 115 (373)
T ss_dssp EEEEEEES----SCEET--TTEECCCSSSBS
T ss_pred cEEEEEee----ccccC--CEEeccCCCCCC
Confidence 88888883 46775 555544444654
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=66.86 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc-CCceeec-CCCCccHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-GSPVIRP-ADIETTALGA 463 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl-g~pv~~~-~~~e~~alGa 463 (523)
.++++.+++.+.-.++..++.. +..+ .+++.|+++||++++|.+.+.+.+.| +.+|... +..++.|+||
T Consensus 324 ~~~~~~~~~~i~~~i~~~l~~~----~~~~-----~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Ga 394 (404)
T 3i33_A 324 EELNADLFRGTLEPVEKALRDA----KLDK-----GQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGA 394 (404)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHH----TCCG-----GGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCH-----hhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHH
Confidence 4455556666665555555543 2221 12899999999999999999999999 7888775 4677899999
Q ss_pred HHHHHHhcc
Q 009868 464 AFAAGLAIG 472 (523)
Q Consensus 464 A~lA~~~~G 472 (523)
|+.|+.-.|
T Consensus 395 a~~a~~l~~ 403 (404)
T 3i33_A 395 AVQAAILIG 403 (404)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999986543
|
| >2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0012 Score=68.52 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=43.6
Q ss_pred ceEEEEecCCCCceEEEEcCCCCE---EEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARP---IGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i---~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
..++|||+|+|++|++++|.+|++ +...+.++| .+- ...+++++++.+.+++++++++
T Consensus 61 G~~laiDlGGTnirv~lV~~~G~~~~~~~~~~~~ip----~~~-~~~~~~~lfd~Ia~~i~~~~~~ 121 (457)
T 2yhx_A 61 GSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAA----AMS-TTAIPSDLWGNXAXSNAAFSSX 121 (457)
T ss_dssp EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCT----TTT-SCSCTHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCeEEEEEEEeCCCeeEEEeeEEEEcC----Ccc-CCCCHHHHHHHHHHHHHHHHhh
Confidence 357999999999999999999988 444444333 110 1226789999999999998876
|
| >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0011 Score=66.29 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=49.8
Q ss_pred CCceEEEEecCCCCceEEEEc-CCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYD-HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d-~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
++.|++|||+|+|++|++++| .+|+++...+.++.. ..+ +.+.+++++++ .+ .+ |.+
T Consensus 12 ~~~~~lgiDiGGT~i~~~l~dl~~g~i~~~~~~~~~~--------~~~-------~~~~i~~~~~~---~~---~~-i~g 69 (332)
T 1sz2_A 12 STKYALVGDVGGTNARLALCDIASGEISQAKTYSGLD--------YPS-------LEAVIRVYLEE---HK---VE-VKD 69 (332)
T ss_dssp --CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--------CSC-------HHHHHHHHHHH---SC---CC-CCE
T ss_pred CCCEEEEEEechhheEEEEEECCCCcEEEEEEecCCC--------cCC-------HHHHHHHHHHh---cC---CC-ccE
Confidence 467899999999999999999 589988765444320 112 23344455544 22 35 888
Q ss_pred EEEccccceeEEeeCCCCcccccccccc
Q 009868 84 IGLTNQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
|||+.. .++|. +....+.+.|.
T Consensus 70 igi~~p----G~vd~--~~~~~~nl~w~ 91 (332)
T 1sz2_A 70 GCIAIA----CPITG--DWVAMTNHTWA 91 (332)
T ss_dssp EEEEES----SCCCS--SEECCSSSCCC
T ss_pred EEEEEe----CceeC--CEEeeeCCCCc
Confidence 988883 46674 44444445674
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0018 Score=66.56 Aligned_cols=76 Identities=21% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceee---------cCCC
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIR---------PADI 456 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~---------~~~~ 456 (523)
+++++.+++.+.-.++..++. .+..+ .+++.|+++||++++|.+.+++.+.|+.++.+ .+..
T Consensus 317 ~~~~~~~~~~i~~~i~~~l~~----~~~~~-----~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~ 387 (409)
T 4gni_A 317 ETIARTVFEGFNRLVESAVKK----AGLDP-----LDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPS 387 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHHHH----TTCCG-----GGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----cCCCH-----HHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHH
Confidence 344455555555444444443 23321 12799999999999999999999999987433 4577
Q ss_pred CccHHHHHHHHHHh
Q 009868 457 ETTALGAAFAAGLA 470 (523)
Q Consensus 457 e~~alGaA~lA~~~ 470 (523)
++.|+|||+.|+.-
T Consensus 388 ~ava~GAa~~~~~~ 401 (409)
T 4gni_A 388 ELQARGAALQASLI 401 (409)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 89999999998753
|
| >3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0023 Score=61.53 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhh--hccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCcc
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKD--AVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETT 459 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~--~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~ 459 (523)
..|...|-..++-|.+..+..+++++++. .+.+ -+|+++||.++ +++.. ..+..+ .++-+
T Consensus 184 ~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~~---------~~vi~TGG~a~------~l~~~-~~~~~~--~~~Lv 245 (266)
T 3djc_A 184 RSTIESIQSGVYYGVLGACKELIQRIHHEAFNGDQ---------ILILATGGFAS------LFDKQ-GLYDHL--VPDLV 245 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC---------EEEEEESTTGG------GGTTT-TCCSEE--CTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---------CEEEEECCChH------HhccC-CCCCEE--CcChH
Confidence 46888999999999999999999999875 4433 57999999874 33444 333333 35677
Q ss_pred HHHHHHHHH
Q 009868 460 ALGAAFAAG 468 (523)
Q Consensus 460 alGaA~lA~ 468 (523)
..|-.++.-
T Consensus 246 L~GL~~i~~ 254 (266)
T 3djc_A 246 LQGIRLAAM 254 (266)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 778777654
|
| >1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00016 Score=70.83 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=35.3
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
|++|||+|+|++|++++| +|+++.+.+.+.. .+. ..+++++++.+.+.+++++.. .+ |.+|||+
T Consensus 1 ~~lgiDiGGT~i~~~l~d-~g~il~~~~~~~~--~~~----~~~~~~~~~~i~~~i~~~~~~--------~~-i~~igig 64 (291)
T 1zxo_A 1 MILIADSGSTKTDWCVVL-NGAVIKRLGTKGI--NPF----FQSEEEIQQKLTASLLPQLPE--------GK-FNAVYFY 64 (291)
T ss_dssp ---CEECCTTCEEEEEEC-SSSEEEEEEECCC--CTT----TSCSTTTTTTTTC----------------------CEEE
T ss_pred CEEEEEeccccEEEEEEc-CCeEEEEEECCCC--Ccc----cCCHHHHHHHHHHHHHHhcCc--------cc-ccEEEEE
Confidence 478999999999999999 9999987665432 111 123445555566666554321 35 7778877
Q ss_pred cc
Q 009868 88 NQ 89 (523)
Q Consensus 88 ~~ 89 (523)
..
T Consensus 65 ~p 66 (291)
T 1zxo_A 65 GA 66 (291)
T ss_dssp CT
T ss_pred cC
Confidence 74
|
| >1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0021 Score=66.72 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=51.3
Q ss_pred ceEEEEecCCCCceEEEEcCCC-CE---EEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCce
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQA-RP---IGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLK 82 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g-~i---~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~ 82 (523)
..+++||+|+||+|+++++.+| +- +...+.+.| .+- ...+.+++++.+.+++++++++ .+... + ..
T Consensus 68 G~~lalDlGGTn~Rv~~V~l~G~~~~~~i~~~~~~ip----~~~-~~~~~~~lfd~Ia~~i~~~l~~---~~~~~-~-~~ 137 (451)
T 1bdg_A 68 GNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIP----AEK-MSGSGTELFKYIAETLADFLEN---NGMKD-K-KF 137 (451)
T ss_dssp EEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCC----TTT-TTSBHHHHHHHHHHHHHHHHHH---TTCCS-S-CE
T ss_pred ceEEEEEeCCCeEEEEEEecCCCCcceEEEEEEEecC----Ccc-cCCCHHHHHHHHHHHHHHHHHh---cCCCc-c-cc
Confidence 4679999999999999999988 51 112222222 110 1236789999999999999886 34332 3 45
Q ss_pred EEEEccccceeEEeeC
Q 009868 83 AIGLTNQRETTVLWSK 98 (523)
Q Consensus 83 aIgis~~~~~~v~~d~ 98 (523)
.||++. ..++|.
T Consensus 138 ~lG~tf----sfPv~q 149 (451)
T 1bdg_A 138 DLGFTF----SFPCVQ 149 (451)
T ss_dssp EEEEEE----CSCEEE
T ss_pred ceEEEE----eeEecc
Confidence 566665 346664
|
| >1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0041 Score=70.35 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=55.2
Q ss_pred ceEEEEecCCCCceEEEEcCCCC----E-EEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCc
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQAR----P-IGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGL 81 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~----i-~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I 81 (523)
..++|||+|+|++|++++|.+|+ + +...+.++|... .+.+.+++++.+.+++++++++ .+...+...
T Consensus 78 G~~laiDlGGTnirv~lv~~~G~~~~~i~~~~~~~~ip~~~-----~~~~~~~lf~~Ia~~i~~~l~~---~~~~~~~~~ 149 (917)
T 1cza_N 78 GDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENI-----VHGSGSQLFDHVAECLGDFMEK---RKIKDKKLP 149 (917)
T ss_dssp EEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCHHH-----HSSBHHHHHHHHHHHHHHHHHH---HTCTTSCCC
T ss_pred ceEEEEEeCCCeEEEEEEEecCCCcceEEEEEEEEECCccc-----ccCCHHHHHHHHHHHHHHHHHh---cCCCCCccc
Confidence 45799999999999999998876 4 445555544110 1236789999999999998876 222222203
Q ss_pred eEEEEccccceeEEe-eCCCCccc
Q 009868 82 KAIGLTNQRETTVLW-SKSTGCPL 104 (523)
Q Consensus 82 ~aIgis~~~~~~v~~-d~~~g~~l 104 (523)
.+|+++. ++.. +.++|..+
T Consensus 150 lGi~fs~----P~~q~~~~~G~l~ 169 (917)
T 1cza_N 150 VGFTFSF----PCQQSKIDEAILI 169 (917)
T ss_dssp EEEEECS----CEECSSTTCCEEC
T ss_pred EEEEEcc----ccccCcCCceEEE
Confidence 4666666 2322 22367666
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0033 Score=63.86 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=41.7
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
++.|+++||+++.|.+.+.+.+.|+.++.... ..++.|+|||+.|+.
T Consensus 334 i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 334 IDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp CCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTT
T ss_pred CCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHh
Confidence 78999999999999999999999999887654 677889999998753
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0075 Score=63.79 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeec-CCCCccHHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRP-ADIETTALGAA 464 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~-~~~e~~alGaA 464 (523)
.++++.+++.+.-.++..++.. +..+ .+++.|+++||+++.|.+.+.+.+.|++++... +..++.|+|||
T Consensus 275 e~l~~~~~~~i~~~i~~~L~~a----~~~~-----~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa 345 (509)
T 2v7y_A 275 EELSAHLVERTMGPVRQALQDA----GLTP-----ADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAA 345 (509)
T ss_dssp HHHTHHHHHTTHHHHHHHHHHH----TCCG-----GGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCh-----hHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHH
Confidence 3445555665555555554433 3221 128999999999999999999999999887654 46778899999
Q ss_pred HHHHHhccc
Q 009868 465 FAAGLAIGV 473 (523)
Q Consensus 465 ~lA~~~~G~ 473 (523)
+.|+.-.|.
T Consensus 346 ~~a~~l~~~ 354 (509)
T 2v7y_A 346 IQGGVIAGE 354 (509)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhcCC
Confidence 999875553
|
| >3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0089 Score=62.29 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=54.6
Q ss_pred ceEEEEecCCCCceEEEEcCCCCE-EEEEEeeeeeccCCCCeEEe-CHHHHHHHHHHHHHHHHHHHhhCCCCc-ccCceE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARP-IGSHQVEFTQFYPEAGWVEH-EPMEILESVRVCMAKALDKATADGHNV-DSGLKA 83 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i-~~~~~~~~~~~~~~~g~~e~-d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~I~a 83 (523)
..+|+||+|+|++|+++++.+|+- .......++ .|.. ..+ ..+++++.+.+++.+.+++. +... .+ ...
T Consensus 80 G~~LalDlGGTn~Rv~~V~l~g~~~~~~~~~~~~--Ip~~--~~~~~~~~lfd~Ia~~i~~fl~~~---~~~~~~~-~l~ 151 (485)
T 3o8m_A 80 GDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYR--LPDH--LRTGTSEQLWSFIAKCLKEFVDEW---YPDGVSE-PLP 151 (485)
T ss_dssp EEEEEEEESSSEEEEEEEEEESSSCEEEEEEEEE--CCTT--GGGSBHHHHHHHHHHHHHHHHHHH---CTTCCSS-CEE
T ss_pred eEEEEEEecCCeEEEEEEEECCCCceEEEEEEEe--cCch--hccCCHHHHHHHHHHHHHHHHHHh---ccccccc-ccc
Confidence 368999999999999999987751 111111222 1211 122 37899999999999998872 2211 23 445
Q ss_pred EEEccccceeEEeeCCCCcccccccccc
Q 009868 84 IGLTNQRETTVLWSKSTGCPLYNAIVWM 111 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~~~i~w~ 111 (523)
+|++. ..+++. ++.--...+.|.
T Consensus 152 lGftf----SfP~~q-~~i~~g~li~wt 174 (485)
T 3o8m_A 152 LGFTF----SYPASQ-KKINSGVLQRWT 174 (485)
T ss_dssp EEEEE----CSCEEC-SBTTCCEECCCC
T ss_pred eEEEE----eeeEEE-cccCCEEEeecc
Confidence 66655 336665 331112345675
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.011 Score=64.66 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeec-CCCCccHHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRP-ADIETTALGAA 464 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~-~~~e~~alGaA 464 (523)
.++++.+++.+.-.++..++.. +..+ .+++.|+++||+++.|.+.+.+.+.||+++... +..++.|+|||
T Consensus 307 e~l~~~l~~~i~~~i~~~L~~a----~l~~-----~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa 377 (675)
T 3d2f_A 307 EELVKPLLERVTEPVTKALAQA----KLSA-----EEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAA 377 (675)
T ss_dssp HHHTHHHHTTTTHHHHHHHHHH----TCCG-----GGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----CCCh-----hhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHH
Confidence 4455556666665555555433 3321 128999999999999999999999999988664 46789999999
Q ss_pred HHHHHhccc
Q 009868 465 FAAGLAIGV 473 (523)
Q Consensus 465 ~lA~~~~G~ 473 (523)
+.|+.-.|.
T Consensus 378 ~~a~~ls~~ 386 (675)
T 3d2f_A 378 FICAIHSPT 386 (675)
T ss_dssp HHHHHTCSS
T ss_pred HHHHHhCCC
Confidence 999876554
|
| >1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0087 Score=67.70 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=56.8
Q ss_pred ceEEEEecCCCCceEEEEcCC-CC--EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQ-AR--PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~-g~--i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
..+++||+|+||+|+++++.+ |+ ++...+..+.. |.+ ......+++++.+.+++++++++ .+...+. + .
T Consensus 526 G~~lalDlGGTn~Rv~~V~l~~g~~~~~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~i~~~l~~---~~~~~~~-l-~ 597 (917)
T 1cza_N 526 GDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAI--PIE-IMQGTGEELFDHIVSCISDFLDY---MGIKGPR-M-P 597 (917)
T ss_dssp EEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECC--CHH-HHTSBHHHHHHHHHHHHHHHHHH---HTCCSSC-C-E
T ss_pred eEEEEEEECCCcEEEEEEEeCCCcceeEEeeeeEEec--Ccc-cccCCHHHHHHHHHHHHHHHHHH---cCCCccc-e-e
Confidence 467999999999999999985 64 66443333321 110 01125688999999999999876 3333344 4 6
Q ss_pred EEEccccceeEEeeCCCCccccccccc
Q 009868 84 IGLTNQRETTVLWSKSTGCPLYNAIVW 110 (523)
Q Consensus 84 Igis~~~~~~v~~d~~~g~~l~~~i~w 110 (523)
|||+. ..++|. ....-.+.+.|
T Consensus 598 lG~tf----sfPv~q-~~i~~~~L~~W 619 (917)
T 1cza_N 598 LGFTF----SFPCQQ-TSLDAGILITW 619 (917)
T ss_dssp EEEEE----CSCEEE-EETTEEEECCC
T ss_pred EEEEe----eccccc-cccCccEECce
Confidence 77765 346664 22111244578
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.032 Score=55.45 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=67.3
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecC----CC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPA----DI 456 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~----~~ 456 (523)
.++++.+++.+.++-.+...++...+..+ +++|.++||.+.|..+++.+.+.+ |.+|.+++ ..
T Consensus 221 ~~~diAasfq~~l~~~l~~~~~~a~~~~g----------~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D 290 (334)
T 3eno_A 221 AIEDISYSIQETAFAMLVEVLERALYVSG----------KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMD 290 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCh
Confidence 57899999999999888887776655444 679999999999999999999988 77888754 35
Q ss_pred CccHHHHHHHHHHhccccCCh
Q 009868 457 ETTALGAAFAAGLAIGVFKEE 477 (523)
Q Consensus 457 e~~alGaA~lA~~~~G~~~~~ 477 (523)
.+.++|+|.....-.|...++
T Consensus 291 ~G~~iG~a~~~~~~~g~~~~~ 311 (334)
T 3eno_A 291 NGIMIAQAALLMYKSGVRMSV 311 (334)
T ss_dssp CTHHHHHHHHHHHHTTCCCCG
T ss_pred HHHHHHHHHHHHHHcCCCCCc
Confidence 677889988777767765554
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0079 Score=57.31 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|-..++-|.+..+..+++++++.. + .-+|+++||.++ +++. +..+..+ .++-+..
T Consensus 180 ~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~--~--------~~~vi~TGG~a~------~l~~-~~~~~~~--~~~L~l~ 240 (249)
T 3bex_A 180 KDTEENIRLGVVNGSVYALEGIIGRIKEVY--G--------DLPVVLTGGQSK------IVKD-MIKHEIF--DEDLTIK 240 (249)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C--------CCCEEEESTTSG------GGGG-GSCCSEE--CTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C--------CCEEEEECCChH------HHhc-CCCCcEE--CcCcHHH
Confidence 468888999999999999999999988754 3 357999999874 3344 5544443 3455666
Q ss_pred HHHHHH
Q 009868 462 GAAFAA 467 (523)
Q Consensus 462 GaA~lA 467 (523)
|-.++.
T Consensus 241 GL~~i~ 246 (249)
T 3bex_A 241 GVYHFC 246 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.049 Score=54.06 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecC----C
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPA----D 455 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~----~ 455 (523)
..++++.+++.+.++-.+...++.+.+..+ .++|.++||.+.|..+++.+.+.+ |.+|.+++ .
T Consensus 215 ~~~~diAa~fq~~l~~~l~~~~~~~~~~~~----------~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~ 284 (330)
T 2ivn_A 215 YRVEDLAYSFQETAFAALVEVTERAVAHTE----------KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCR 284 (330)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCC
Confidence 468999999999999888888777655443 578999999999999999999887 67887755 3
Q ss_pred CCccHHHHHHHHHHhccccCCh
Q 009868 456 IETTALGAAFAAGLAIGVFKEE 477 (523)
Q Consensus 456 ~e~~alGaA~lA~~~~G~~~~~ 477 (523)
..+.++|+|.......|...++
T Consensus 285 D~G~~iG~a~~~~~~~~~~~~~ 306 (330)
T 2ivn_A 285 DNGAMIAYTGLRMYKAGISFRL 306 (330)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCG
T ss_pred hhHHHHHHHHHHHHhcCCCCCc
Confidence 4566889888766555554444
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.017 Score=61.65 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=55.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC-Cceeec-CCCCccHHHHH
Q 009868 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG-SPVIRP-ADIETTALGAA 464 (523)
Q Consensus 387 ~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg-~pv~~~-~~~e~~alGaA 464 (523)
+++..+++.+.-.++..++. .+..+ .+++.|+++||+++.|.+.+.+.+.|+ +++... +..++.|+|||
T Consensus 304 ~l~~~~~~~i~~~i~~~L~~----a~~~~-----~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa 374 (554)
T 1yuw_A 304 ELNADLFRGTLDPVEKALRD----AKLDK-----SQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAA 374 (554)
T ss_dssp HHTHHHHHHTTHHHHHHHHH----TTCCG-----GGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----cCCCh-----hhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHH
Confidence 34555555555444444433 23221 128999999999999999999999996 777654 56788999999
Q ss_pred HHHHHhcc
Q 009868 465 FAAGLAIG 472 (523)
Q Consensus 465 ~lA~~~~G 472 (523)
+.|+.-.|
T Consensus 375 ~~a~~l~~ 382 (554)
T 1yuw_A 375 VQAAILSG 382 (554)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhcC
Confidence 99987555
|
| >2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.021 Score=54.92 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|-..++-|.+..+..+++++++..+. .-+|+++||.+ ++++..+..+..+ .++-+..
T Consensus 182 ~nT~~ai~sGi~~g~~g~i~~~i~~~~~e~~~---------~~~vi~TGG~a------~~l~~~~~~~~~~--~~~LvL~ 244 (268)
T 2h3g_X 182 KNTVSAMQSGILYGYVGQVEGIVKRMKEEAKQ---------EPKVIATGGLA------KLISEESNVIDVV--DPFLTLK 244 (268)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---------CCEEEEESTTH------HHHHHHCSSCSEE--CTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CCEEEEECCCH------HHHHhhCCCCCEE--CcchHHH
Confidence 46888899999999999999999999876553 35799999976 4556667665554 3466778
Q ss_pred HHHHHHHH
Q 009868 462 GAAFAAGL 469 (523)
Q Consensus 462 GaA~lA~~ 469 (523)
|-.++...
T Consensus 245 GL~~i~~~ 252 (268)
T 2h3g_X 245 GLYMLYER 252 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
|
| >3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.022 Score=61.04 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=57.7
Q ss_pred CceEEEEecCCCCceEEEEcC-CCCEEEEEEeeeeeccCCCC------eEE---eCHHHHHHHHHHHHHHHHHHHh-hCC
Q 009868 6 EVFIGAIDQGTTSTRFIIYDH-QARPIGSHQVEFTQFYPEAG------WVE---HEPMEILESVRVCMAKALDKAT-ADG 74 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g------~~e---~d~~~~~~~~~~~l~~~~~~~~-~~~ 74 (523)
..|-++||||||.+.+.|+|. +|+++++.+..+|+...... ++. ...+++-+++.+.+.++++++. +.+
T Consensus 205 ~~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~G~DVisRI~~a~~~~~g~~~L~~~v~~~in~li~~l~~~~~ 284 (631)
T 3zyy_X 205 RVFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHG 284 (631)
T ss_dssp CCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGTCSSHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCcchHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 357799999999999999995 89999999888876433221 121 1234555666666666666542 257
Q ss_pred CCcccCceEEEEcc
Q 009868 75 HNVDSGLKAIGLTN 88 (523)
Q Consensus 75 ~~~~~~I~aIgis~ 88 (523)
+++++ |..+.|++
T Consensus 285 i~~~~-I~~~~v~G 297 (631)
T 3zyy_X 285 VEKKE-IMAAVVAG 297 (631)
T ss_dssp CCGGG-EEEEEEEE
T ss_pred CCHHH-eeEEEEEc
Confidence 88888 88887765
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.037 Score=56.84 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhh-----hccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKD-----AVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA 454 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~-----~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~ 454 (523)
-.+++++.+|-+.-.++..++...-. .... ++.|+++||+|+-+.+.+++++.||+||.+..
T Consensus 294 l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~--------~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~ 360 (419)
T 4a2a_A 294 LSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGI--------PGGVVLTGGGAKIPRINELATEVFKSPVRTGC 360 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----------------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc--------CCEEEEECchhchhhHHHHHHHHHCCCeEEEe
Confidence 45677788888888887777655310 0122 67899999999999999999999999998755
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0067 Score=60.56 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=40.5
Q ss_pred cEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHHHHHHHHH
Q 009868 424 FLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTALGAAFAAG 468 (523)
Q Consensus 424 ~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~ 468 (523)
+.|+++||+++.+.+.+.+.+.|+.||.+.. ..++.|+|||++|.
T Consensus 279 ~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~ 324 (344)
T 1jce_A 279 RGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLD 324 (344)
T ss_dssp HCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGG
T ss_pred CcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHh
Confidence 5899999999999999999999999998864 67788999998775
|
| >3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.053 Score=59.59 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecC----C
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPA----D 455 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~----~ 455 (523)
.+++++.+++.++++-.+......+.+..| +++|.++||.++|..+++.+...+ |.+|..+. .
T Consensus 664 ~~~~dIAasFq~ala~~L~~~~~~a~~~~g----------~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~ 733 (761)
T 3vth_A 664 FEKSYISAKFHNTVVNFTYDLANLIRKETG----------INKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCN 733 (761)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCC
Confidence 578899999999998888887776655444 678999999999999999999887 78887754 4
Q ss_pred CCccHHHHHHHHHHhc
Q 009868 456 IETTALGAAFAAGLAI 471 (523)
Q Consensus 456 ~e~~alGaA~lA~~~~ 471 (523)
..+.|+|.|++|+...
T Consensus 734 DgGialGQA~~a~~~~ 749 (761)
T 3vth_A 734 DGGISLGQAVIANKIL 749 (761)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh
Confidence 4566899999987543
|
| >3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.13 Score=51.26 Aligned_cols=105 Identities=18% Similarity=0.099 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC-CceeecCC-----
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG-SPVIRPAD----- 455 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg-~pv~~~~~----- 455 (523)
..+++|+.+-+.|=.|.++.+.++.+. .. +++|+++|||++|+.+++.++..+. .+|...+.
T Consensus 255 ~ls~~Dv~ATLt~~TA~sIa~~~~~~~----~~--------~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~ 322 (371)
T 3qbx_A 255 ALPAADIQATLLELSARSISESLLDAQ----PD--------CEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPP 322 (371)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHC----TT--------CCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcc----CC--------CceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCCh
Confidence 357899999998888877776665542 23 6899999999999999999999985 77776542
Q ss_pred CCccHHHHHHHHHHhc-cccCChhHHhcccCCCCCcEEeCCCCH
Q 009868 456 IETTALGAAFAAGLAI-GVFKEEEIFDSGERTKTSTTFKPVLNE 498 (523)
Q Consensus 456 ~e~~alGaA~lA~~~~-G~~~~~~~a~~~~~~~~~~~~~P~~~~ 498 (523)
.---|+.-|.+|...+ |.-.++...-..-.......+.|--..
T Consensus 323 d~~EA~aFA~LA~~~l~g~p~~lp~vTGA~~~~~lG~i~p~~~~ 366 (371)
T 3qbx_A 323 AWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAGSH 366 (371)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCSCHHHHCCSSCCCCCEEECC---
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcccCCCCCccCceeccCCCc
Confidence 1122566677776654 444455443111111244567776543
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.015 Score=62.75 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=44.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceeec-CCCCccHHHHHHHHHHhcc
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIRP-ADIETTALGAAFAAGLAIG 472 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~-~~~e~~alGaA~lA~~~~G 472 (523)
++.|+++||+++.|.+.+.+.+.||+++... +..++.|+|||+.|+.-.|
T Consensus 334 i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~ 384 (605)
T 2kho_A 334 IDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTG 384 (605)
T ss_dssp CSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTT
T ss_pred CceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999887654 4678889999999986555
|
| >4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.046 Score=60.33 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeec----CC
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRP----AD 455 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~----~~ 455 (523)
.+++++.+++.+.++-.+...+..+.+.+| ++.|.++||.+.|..+++.+.+.+ |..|.++ ..
T Consensus 676 ~~~~dIAasfQ~al~~~L~~~~~~a~~~tg----------~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~n 745 (772)
T 4g9i_A 676 ASPADIAYSAHLALARAFAHTAVERAREFG----------VKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRG 745 (772)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTTT----------CSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCC
Confidence 467889999888888888777776655444 678999999999999999998876 5667664 34
Q ss_pred CCccHHHHHHHHHHhccccCC
Q 009868 456 IETTALGAAFAAGLAIGVFKE 476 (523)
Q Consensus 456 ~e~~alGaA~lA~~~~G~~~~ 476 (523)
..+.|+|.|++|+..+.-|.+
T Consensus 746 DgGiALGQA~iA~~~L~~~l~ 766 (772)
T 4g9i_A 746 DNGVNVGQAFLGGLYLEGYLT 766 (772)
T ss_dssp GGGHHHHHHHHHHHHHHTSSC
T ss_pred cchHHHHHHHHHHHHHhccCc
Confidence 556799999999887754443
|
| >3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.086 Score=56.81 Aligned_cols=135 Identities=16% Similarity=0.063 Sum_probs=87.3
Q ss_pred hhchhHHHHHHHHHcCCC-C--CHH-----HHHHHHHhcCCCCceEEEcCC-CCCCCCCCCCCCceeEEcC-CCCCCHHH
Q 009868 318 IAIAGAAVQWLRDSLGII-S--SAS-----EIEELALQVNSTGGVYFVPAF-NGLFAPWWRDDARGVCIGI-TRFTSKAH 387 (523)
Q Consensus 318 ~~~~G~~l~w~~~~~~~~-~--~~~-----~l~~~a~~~~~~~gl~~~P~l-~G~r~P~~~~~arg~~~gl-~~~~~~~~ 387 (523)
+++.|..++-+...+|.. . +|+ +|+.+|.+... ..+-+|+- .+. ..|. ++.+..+ ....++++
T Consensus 502 tSS~GRLFDavAalLGl~~~~~~YEGqaA~~LEalA~~~~~--~~~~lp~~i~~~---~ld~--s~l~~~ll~~g~~~~d 574 (657)
T 3ttc_A 502 ASSCGRLFDAVAAALGCAPATLSYEGEAACALEALAASCDG--VTHPVTMPRVDN---QLDL--ATFWQQWLNWQAPVNQ 574 (657)
T ss_dssp EEEHHHHHHHHHHHHTCSCSSCSSTTHHHHHHHHHHHTCCC--CCCCCCCCEETT---EECH--HHHHHHHHTCCCCHHH
T ss_pred cCccchHHHHHHHHcCCCCccCccCchhHHHHHHHHhhCCC--ccCCceeeccCC---cccH--HHHHHHHHHcCCCHHH
Confidence 346788888888777763 2 232 47777754311 11001111 010 0110 1111111 12467899
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc-CCceeecC----CCCccHHH
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-GSPVIRPA----DIETTALG 462 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl-g~pv~~~~----~~e~~alG 462 (523)
+.+++.++++-.+...++.+.+..| +++|.++||.++|..+++.+...+ |.+|..+. ...+.++|
T Consensus 575 IAasFh~ala~~L~~~~~ra~~~~g----------~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~DnGiaLG 644 (657)
T 3ttc_A 575 RAWAFHDALAQGFAALMREQATMRG----------ITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLG 644 (657)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT----------CCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCcHHHHHH
Confidence 9999999999998888777655443 679999999999999999999998 78887642 45577899
Q ss_pred HHHHHHH
Q 009868 463 AAFAAGL 469 (523)
Q Consensus 463 aA~lA~~ 469 (523)
-|++|+.
T Consensus 645 QA~~a~~ 651 (657)
T 3ttc_A 645 QGVIAAA 651 (657)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998863
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.075 Score=53.52 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=50.7
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhh-ccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDA-VEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA 454 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~-g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~ 454 (523)
.-.++++..++.++-.++..++.+.... ... ++.|+++||+++.+.+.+.+++.|+.||.+..
T Consensus 275 ~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~--------~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~ 338 (377)
T 2ych_A 275 RIYDAIRPVLVELTQELRRSLEFFRIQLEEAS--------PEVGYLLGGGSKLRGLASLLTDTLGVNLEPVN 338 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--------CSEEEEESGGGGSTTHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--------cCEEEEECccccchhHHHHHHHHhCCCeEecC
Confidence 4567788888999888888887653211 224 89999999999999999999999999999863
|
| >3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.15 Score=54.03 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCC-ceeecC--CCCccH
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGS-PVIRPA--DIETTA 460 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~-pv~~~~--~~e~~a 460 (523)
..+++.++..+.++-.+...+..+.+..| +++|.++||.+.|..+++.+....+. .|.++. ...+.+
T Consensus 279 ~~~dIAasfQ~~l~~~L~~~~~~a~~~tg----------~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~a 348 (576)
T 3ven_A 279 EYRDLAATAQAALERAVFGLADSVLARTG----------ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVS 348 (576)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHH
Confidence 37899999999998888887776655444 67999999999999999999887765 666543 456778
Q ss_pred HHHHHHHHHhccc
Q 009868 461 LGAAFAAGLAIGV 473 (523)
Q Consensus 461 lGaA~lA~~~~G~ 473 (523)
+|+|+.+....|.
T Consensus 349 iGqA~~a~~~~g~ 361 (576)
T 3ven_A 349 LGAAAAVAVELGD 361 (576)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999998876654
|
| >3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.26 Score=49.10 Aligned_cols=83 Identities=23% Similarity=0.221 Sum_probs=58.1
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc-CCceeecCC-----CC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-GSPVIRPAD-----IE 457 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl-g~pv~~~~~-----~e 457 (523)
+++|+.+-+.|=.|.++.+.++.+ . . .++|+++|||++|+.+++.++..+ +.+|...+. .-
T Consensus 264 ~~~Dv~ATLt~~TA~sIa~~~~~~----~-~--------~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t~~~Gi~~d~ 330 (370)
T 3cqy_A 264 NEEDIQSTLLDLTCHSIAQDILKL----A-Q--------EGELFVCGGGAFNAELMQRLAALLPGYRIDTTSALGVDPKW 330 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----C-S--------SEEEEEESGGGGCHHHHHHHHHHCTTEEEEEGGGGTCCTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc----C-C--------CCEEEEECCCcCCHHHHHHHHHhCCCCeeeeHHHhCCChhH
Confidence 689999999887777777666544 2 3 579999999999999999999999 457765431 11
Q ss_pred ccHHHHHHHHHHhc-cccCChhH
Q 009868 458 TTALGAAFAAGLAI-GVFKEEEI 479 (523)
Q Consensus 458 ~~alGaA~lA~~~~-G~~~~~~~ 479 (523)
--|+.-|.+|...+ |.-.++..
T Consensus 331 ~EA~aFA~LA~~~l~g~p~nlp~ 353 (370)
T 3cqy_A 331 AEGIAFAWLAMRYQLGLPANLPA 353 (370)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCc
Confidence 22455566766554 44444443
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.081 Score=54.30 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=49.1
Q ss_pred Cccc-CCceEEEEecCCCCceEEEEcCC--C-CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCC
Q 009868 1 MAKA-KEVFIGAIDQGTTSTRFIIYDHQ--A-RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHN 76 (523)
Q Consensus 1 m~~~-~~~~~lgIDiGtt~~K~~l~d~~--g-~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (523)
|.+| +..+++||||||+++|+++...+ | ++++....+.. -=..| .-.|.+...+++.++++++-+. .+..
T Consensus 1 ~~~m~~~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~--gv~~G-~I~di~~~~~~I~~av~~ae~~---~g~~ 74 (419)
T 4a2a_A 1 MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSR--GLDEG-EIKDAIAFKESVNTLLKELEEQ---LQKS 74 (419)
T ss_dssp ------CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECC--SEETT-EESBHHHHHHHHHHHHHHHHHH---HTSC
T ss_pred CCCCccCCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccC--CeeCC-EEEcHHHHHHHHHHHHHHHHHH---cCCC
Confidence 5665 35689999999999999999743 3 67766655422 11233 3568888888888888777554 2433
Q ss_pred cccCceEEEEccc
Q 009868 77 VDSGLKAIGLTNQ 89 (523)
Q Consensus 77 ~~~~I~aIgis~~ 89 (523)
..+ =..+++++.
T Consensus 75 i~~-~v~v~i~g~ 86 (419)
T 4a2a_A 75 LRS-DFVISFSSV 86 (419)
T ss_dssp CCS-EEEEEECCT
T ss_pred cCc-eEEEEEcCC
Confidence 211 145566553
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=92.18 E-value=0.17 Score=49.67 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=35.7
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC---ceeecC-CCCccHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS---PVIRPA-DIETTALGAAFAA 467 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~---pv~~~~-~~e~~alGaA~lA 467 (523)
++.|+++||+|+- +.+.+.+.++. ++.++. +.++.|+|+++.+
T Consensus 273 ~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 273 YTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp CCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred CCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 7899999999864 88999999998 577655 5668899999864
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.33 Score=48.01 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=49.2
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEE-eCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVE-HEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e-~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
++||||.++..++++|++. |++++.....+. .+..|+.. .....-.+.+...+++++++ .++++++ |.+|++
T Consensus 2 ~iLgIdts~~~~~val~~~-g~i~~~~~~~~~--~~~gg~~p~~~~~~h~~~l~~~i~~~L~~---agi~~~d-id~Ia~ 74 (330)
T 2ivn_A 2 LALGIEGTAHTLGIGIVSE-DKVLANVFDTLT--TEKGGIHPKEAAEHHARLMKPLLRKALSE---AGVSLDD-IDVIAF 74 (330)
T ss_dssp CEEEEECSSSEEEEEEECS-SCEEEEEEEECC--CTTCCCCHHHHHHHHHHHHHHHHHHHHHH---HTCCTTT-CCEEEE
T ss_pred EEEEEEccCCCeEEEEEEC-CEEEEEEEEEee--cccCCcCchhhHHHHHHHHHHHHHHHHHH---cCCCHHH-CcEEEE
Confidence 5899999999999999974 578865444332 33334321 11222344556677777776 5788889 999987
Q ss_pred cc
Q 009868 87 TN 88 (523)
Q Consensus 87 s~ 88 (523)
+.
T Consensus 75 ~~ 76 (330)
T 2ivn_A 75 SQ 76 (330)
T ss_dssp EE
T ss_pred EC
Confidence 64
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.26 Score=49.50 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=36.6
Q ss_pred ceEEEEecCCCCceEEEEcCCCC--EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQAR--PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~--i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~ 65 (523)
..++|||||||++|++++. +|+ +......++|...-..| .-.|++.+.+++.+++++
T Consensus 13 ~~~vgiDiGt~~i~~~~~~-~~~~~i~~~g~~~~ps~~~~~g-~i~d~~~~~~~ik~~~~~ 71 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVS-GNPPALKALASRPTPPGLLMEG-MVAEPAALAQEIKELLLE 71 (377)
T ss_dssp CCCEEEEECSSEEEEEEEE-TTTTEEEEEEEEECCTTSEETT-EESCHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCeEEEEEEe-CCceEEEEEEeEECCCCcccCC-CcCCHHHHHHHHHHHHHH
Confidence 4678999999999999996 555 44444555442221234 345788766666655544
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=91.60 E-value=7.5 Score=37.00 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=30.8
Q ss_pred ccEEEEecCccccHHHHHHHHhhc------------CCceeecC-CCCccHHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLL------------GSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advl------------g~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
++.|++.||.+..+.+.+.+...+ ..+|.... ..++.++|||.++..
T Consensus 228 p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 228 PGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred CCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 678999999886665544333221 24566555 456788999998754
|
| >3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.76 Score=47.06 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=39.7
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+++||+|+||+|+++++..|.+ ...+..++ .|..- ..-..+++++.+.+++.+.+++
T Consensus 60 ~~LAlDlGGTn~RV~~V~l~g~~-~~~~~~~~--ip~~~-~~g~~~~LFd~Ia~~i~~fl~~ 117 (445)
T 3hm8_A 60 DFLALDLGGTNFRVLLVRVTTGV-QITSEIYS--IPETV-AQGSGQQLFDHIVDCIVDFQQK 117 (445)
T ss_dssp EEEEEEESSSSEEEEEEEESSSE-EEEEEEEC--CCHHH-HTSBHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCeEEEEEEEECCce-EEEEEEec--cCccc-cCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999987762 22222222 11100 0114678999999999998876
|
| >3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.21 Score=49.08 Aligned_cols=46 Identities=17% Similarity=0.003 Sum_probs=35.0
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGL 469 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~ 469 (523)
.+.|.++|...-.+++.+.++ .+|.++...+..+++..|-..++..
T Consensus 259 ~~~V~LiG~~~L~~~Y~~AL~-~~G~~~~~~d~d~a~~~GL~~~a~~ 304 (330)
T 3t69_A 259 VDGVCLVGSGGLGTLYRTALE-SQGLNVRAVDADEAVRAGLSAAARA 304 (330)
T ss_dssp CCEEEEEECHHHHHHHHHHHH-HTTCEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCHHHHHHHHHHHH-HcCCCceeeCHHHHHHHHHHHHHHH
Confidence 367999999998888888886 4899998877666666676555443
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=90.58 E-value=7.9 Score=37.57 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=41.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcccc-HHHHHHHHhhc----------CCceeecC-CCC
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVN-NLLMQIQADLL----------GSPVIRPA-DIE 457 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s-~~~~qi~Advl----------g~pv~~~~-~~e 457 (523)
+.+++-.+..+...+..+... .. ++.|++.||.+++ +.+.+.+...+ ..+|.... ..+
T Consensus 238 ~~~~~~~~~~La~~i~~l~~~--ld--------P~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~ 307 (321)
T 3r8e_A 238 LAVWADIGTIIGESLVNIVRV--MD--------LNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLEND 307 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HC--------CCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HC--------CCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCc
Confidence 344554555555554444332 34 6889999999875 55544443322 23455555 346
Q ss_pred ccHHHHHHHHHH
Q 009868 458 TTALGAAFAAGL 469 (523)
Q Consensus 458 ~~alGaA~lA~~ 469 (523)
++++|||.++..
T Consensus 308 a~~~GAa~l~~~ 319 (321)
T 3r8e_A 308 AGLLGAAGLIME 319 (321)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 788999998753
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=90.02 E-value=5.9 Score=38.64 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=30.2
Q ss_pred ccEEEEecCccccHHHHHHHHhhc---------CCceeecC-CCCccHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLL---------GSPVIRPA-DIETTALGAAFAAG 468 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advl---------g~pv~~~~-~~e~~alGaA~lA~ 468 (523)
++.|++.||.++.+.+.+.+...+ ..+|.... ..+++++|||.++.
T Consensus 270 p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~l 325 (327)
T 4db3_A 270 PHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLNI 325 (327)
T ss_dssp CSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTTC
T ss_pred CCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHHh
Confidence 688999999987665555444333 22344444 35678899998763
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=1.5 Score=46.44 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---CCceeecC----C
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---GSPVIRPA----D 455 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---g~pv~~~~----~ 455 (523)
.+++++.+++.+.++-.+....+...+..| +++|.++||.+.|..+++.+...+ |.+|..++ .
T Consensus 219 ~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~----------~~~~~~~GGVa~N~~l~~~l~~~~~~~~~~~~~p~~~~~~ 288 (540)
T 3en9_A 219 ERLEDICYSLQEYAFSMLTEITERALAHTN----------KGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEFCG 288 (540)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CSEEEEESGGGGCHHHHHHHHHHHHHTTCEEECCCHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeCcHHhHHHHHHHHHHHHHhcCCEEEeCCCcCCC
Confidence 357899999999988888777766544444 579999999999999999999876 67788764 2
Q ss_pred CCccHHHHHHHHHHhccccCCh
Q 009868 456 IETTALGAAFAAGLAIGVFKEE 477 (523)
Q Consensus 456 ~e~~alGaA~lA~~~~G~~~~~ 477 (523)
..++.+|.+-.-....|...++
T Consensus 289 Dngamia~~~~~~~~~g~~s~l 310 (540)
T 3en9_A 289 DNGAMIAWLGLLMHKNGRWMSL 310 (540)
T ss_dssp SCHHHHHHHHHHHHHTCCCCCG
T ss_pred CCHHHHHHHHHHHHHcCCCCcc
Confidence 3333445443333334554444
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=87.53 E-value=1 Score=44.53 Aligned_cols=76 Identities=13% Similarity=0.230 Sum_probs=50.1
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEe-CHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEH-EPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~-d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
++++||||-.+..+-++|++ ++++++....... .+..|.+.. ....-.+.+...+++++++ +++++++ |.+|
T Consensus 5 ~M~iLgIdts~~~~svAl~~-~~~i~~~~~~~~~--~~~gGv~p~~a~~~H~~~l~~~i~~~L~~---ag~~~~d-id~I 77 (334)
T 3eno_A 5 PMIVLGLEGTAHTISCGIID-ESRILAMESSMYR--PKTGGIRPLDAAVHHSEVIDTVISRALEK---AKISIHD-IDLI 77 (334)
T ss_dssp CCEEEEEECSSSEEEEEEEE-SSCCCEEEEEECC--CSSCSCCHHHHHHHHHHHHHHHHHHHHHH---HTCCGGG-CCEE
T ss_pred CceEEEEECCCcCeEEEEEE-CCEEEEEEEEeec--cccCCcCcchHHHHHHHHHHHHHHHHHHH---cCCCHHH-CCEE
Confidence 35799999888889999998 5578775443322 233343211 1223344566777777776 5788899 9999
Q ss_pred EEcc
Q 009868 85 GLTN 88 (523)
Q Consensus 85 gis~ 88 (523)
+++.
T Consensus 78 av~~ 81 (334)
T 3eno_A 78 GFSM 81 (334)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9865
|
| >3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A* | Back alignment and structure |
|---|
Probab=86.87 E-value=1.2 Score=46.03 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=40.1
Q ss_pred eEEEEecCCCCceEEEEcCCCC-----EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR-----PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~-----i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+|+||+|+||.|+++++..|. .+...+..++ .|..- ..-..+++++.+.+++.+.+++
T Consensus 78 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~~~--Ip~~l-~~gt~~eLFd~IA~~i~~fl~~ 141 (470)
T 3f9m_A 78 DFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYS--IPEDA-MTGTAEMLFDYISECISDFLDK 141 (470)
T ss_dssp EEEEEEESSSEEEEEEEEEEC----CEEEEEEEEEEE--CCHHH-HSSBHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCceEEEEEEEECCCCCCcceEEEEEEeec--CChHh-ccCCHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999996543 2333333333 22110 0124689999999999999886
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.75 E-value=14 Score=35.42 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcc-cc-HHHHHHHHhhcC--------CceeecC-CCC
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGAT-VN-NLLMQIQADLLG--------SPVIRPA-DIE 457 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s-~~~~qi~Advlg--------~pv~~~~-~~e 457 (523)
++.+++-.+..+...+..+... .. ++.|++.||.+ +. +.+.+.+...+. .+|..+. ..+
T Consensus 214 a~~~~~~~~~~l~~~i~~l~~~--~~--------p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~ 283 (302)
T 3vov_A 214 AERLVLQAARYVGIGLASLVKA--FD--------PGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAE 283 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HC--------CCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCc
Confidence 3444555555555555444332 24 68899999988 63 544444433321 2255555 356
Q ss_pred ccHHHHHHHHHHh
Q 009868 458 TTALGAAFAAGLA 470 (523)
Q Consensus 458 ~~alGaA~lA~~~ 470 (523)
++++|||.++...
T Consensus 284 a~~~GAa~l~~~~ 296 (302)
T 3vov_A 284 AGLLGAALTAYLE 296 (302)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7889999988754
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=86.60 E-value=1.2 Score=43.58 Aligned_cols=78 Identities=13% Similarity=0.041 Sum_probs=44.2
Q ss_pred eEEEEecCCCCceEEEEcCC-CCEEEEEEeeeeeccCCCCeE---EeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPEAGWV---EHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~~~g~~---e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
.+.+||+||.++|..+++.+ +.+....+...+... ..|-. ..++ +-.+..++++++..+.++..++ ++ |.+
T Consensus 13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrL-g~g~~~~g~ls~-eai~r~~~~L~~f~~~~~~~~v--~~-i~~ 87 (315)
T 1t6c_A 13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSL-GTKVKETGRLQE-DRIEETIQVLKEYKKLIDEFKV--ER-VKA 87 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCT-TTTHHHHSSCCH-HHHHHHHHHHHHHHHHHHHTTC--SE-EEE
T ss_pred EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeec-CCCccccCCcCH-HHHHHHHHHHHHHHHHHHHCCC--Ce-EEE
Confidence 57889999999999999964 433222222222211 22211 1233 3445556677766655544443 46 777
Q ss_pred EEEcccc
Q 009868 84 IGLTNQR 90 (523)
Q Consensus 84 Igis~~~ 90 (523)
++.++.+
T Consensus 88 vATsA~R 94 (315)
T 1t6c_A 88 VATEAIR 94 (315)
T ss_dssp EECHHHH
T ss_pred EEcHHHH
Confidence 7777754
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=85.49 E-value=1.7 Score=42.59 Aligned_cols=78 Identities=19% Similarity=0.103 Sum_probs=45.0
Q ss_pred ceEEEEecCCCCceEEEEcCC-CCEEEEEEeeeeeccC----CCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCc
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYP----EAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGL 81 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~----~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I 81 (523)
+.+.+||+||.++|..+++.+ +.+....+...+.... ..| ..+++ -.+.+++++++..+.++..++ ++ |
T Consensus 4 ~~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g--~ls~e-ai~r~~~~L~~f~~~~~~~~v--~~-v 77 (315)
T 3mdq_A 4 QRIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKG--FITEE-AMDRALDTLKKFRVILDEHAV--VH-V 77 (315)
T ss_dssp CEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGT--CCCHH-HHHHHHHHHHHHHHHHHHTTC--CE-E
T ss_pred ceEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccC--CcCHH-HHHHHHHHHHHHHHHHHHcCC--CE-E
Confidence 457889999999999999853 4332222322222222 122 22343 345566677766655544443 46 7
Q ss_pred eEEEEcccc
Q 009868 82 KAIGLTNQR 90 (523)
Q Consensus 82 ~aIgis~~~ 90 (523)
.+++.++.+
T Consensus 78 ~~vATsA~R 86 (315)
T 3mdq_A 78 IATGTSAVR 86 (315)
T ss_dssp EEEECHHHH
T ss_pred EEEeeHHHH
Confidence 777777643
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=2.2 Score=41.03 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=45.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC-CceeecCCCCccHHHHHHHH
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG-SPVIRPADIETTALGAAFAA 467 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg-~pv~~~~~~e~~alGaA~lA 467 (523)
++.+++-.+..+...+..+... .. ++.|++.||.++++.+.+.+...+. .+|..+...+++++|||.++
T Consensus 216 a~~il~~~~~~La~~i~~l~~~--l~--------p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~GAa~la 285 (299)
T 2e2o_A 216 AMDILKQGAELLASQAVYLARK--IG--------TNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDLGKRSPEIGAVILA 285 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HT--------CSEEEEESGGGGSHHHHHHHHHHHHHTTCEEECCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cC--------CCEEEEECCccCcHHHHHHHHHHCCCCeEeccCCCCChHHHHHHHH
Confidence 3444555555554444444332 24 6789999999876666555555443 47777664467889999998
Q ss_pred HHh
Q 009868 468 GLA 470 (523)
Q Consensus 468 ~~~ 470 (523)
...
T Consensus 286 ~~~ 288 (299)
T 2e2o_A 286 YKE 288 (299)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=84.50 E-value=0.63 Score=44.91 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=21.5
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
...+.+|||+|+|.+|++++ ++++++..
T Consensus 18 ~~~~~iGIDiGsTt~K~V~~-~~~~i~~~ 45 (287)
T 2ews_A 18 GSHMKVGIDAGGTLIKIVQE-QDNQRTFK 45 (287)
T ss_dssp ---CEEEEEECSSEEEEEEE-CSSCEEEE
T ss_pred CCCeEEEEEEChhhEEEEEE-cCCEEEEE
Confidence 34578999999999999999 46777754
|
| >3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A | Back alignment and structure |
|---|
Probab=84.42 E-value=0.62 Score=45.68 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCcee-----e-cC-CC
Q 009868 384 SKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVI-----R-PA-DI 456 (523)
Q Consensus 384 ~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~-----~-~~-~~ 456 (523)
+..++.+.++|-..-.+.+.++.+-+.. . +++|+++|++ +.+..-+|+. +|+. + ++ ..
T Consensus 247 ~~~~lA~~~~~~q~~~I~~av~~v~~~~--~--------~~~vv~aG~G---~~L~~~la~~--~~~~~~~~~i~~~~s~ 311 (334)
T 3cet_A 247 DAENIAKNYYELWKELILENVENVAEKY--G--------SKKVVITGLG---ENILKDALAD--FEVISVAERYGKDVSL 311 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--C--------CCEEEEESTT---HHHHHHHTTT--SEEEEHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--C--------CCeEEEeCCc---HHHHHHHHhh--CCeeehhcccCccccc
Confidence 4567888888877777777666554322 3 5689999988 3677777766 7776 3 22 23
Q ss_pred CccHHHHHHH
Q 009868 457 ETTALGAAFA 466 (523)
Q Consensus 457 e~~alGaA~l 466 (523)
-+.|+|+|++
T Consensus 312 vapA~avA~l 321 (334)
T 3cet_A 312 ATPSFAVAEL 321 (334)
T ss_dssp SHHHHHHHHH
T ss_pred ccCHHHHHHH
Confidence 3567888877
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=82.91 E-value=1.7 Score=43.11 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=44.0
Q ss_pred HHHHhhhhhHHHHHHHH-HHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCcee---ecCCCCccHHHHHH
Q 009868 390 RAVLESMCFQVKDVLDS-MQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVI---RPADIETTALGAAF 465 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~-l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~---~~~~~e~~alGaA~ 465 (523)
+.+++.++-.+...++. +++ .... ++.|+++||+|+- +.+.+.+.|+.... ..++.++.|+|+..
T Consensus 272 ~~~i~~~~~~i~~~i~~~l~~-~~~~--------i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~ 340 (346)
T 2fsj_A 272 GPILEDLANRIIENIRLNLRG-EVDR--------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRD 340 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHGG-GGGG--------EEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhc--------ccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHH
Confidence 55555555555554444 333 2223 7899999999975 78888999984432 22344788999987
Q ss_pred HHH
Q 009868 466 AAG 468 (523)
Q Consensus 466 lA~ 468 (523)
++.
T Consensus 341 ~~~ 343 (346)
T 2fsj_A 341 AAE 343 (346)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=82.69 E-value=1.4 Score=43.71 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=46.2
Q ss_pred CcccCCceEEEEecCCCCceEEEEcCC--CCEEEEEEeeeeeccCCCCeE---EeCHHHHHHHHHHHHHHHHHHHhhCCC
Q 009868 1 MAKAKEVFIGAIDQGTTSTRFIIYDHQ--ARPIGSHQVEFTQFYPEAGWV---EHEPMEILESVRVCMAKALDKATADGH 75 (523)
Q Consensus 1 m~~~~~~~~lgIDiGtt~~K~~l~d~~--g~i~~~~~~~~~~~~~~~g~~---e~d~~~~~~~~~~~l~~~~~~~~~~~~ 75 (523)
|++.+ +.+.+|||||.++|..+++.+ |.+....+...+... ..|-. ..++ +-.+.+++++++..+.++..+
T Consensus 11 ~~~~~-~~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrL-g~g~~~~g~ls~-eai~r~~~aL~~f~~~~~~~~- 86 (343)
T 3cer_A 11 MSKES-VTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRL-GQDVDKTHRFAD-EALERAYVAAREFAGVIAEHP- 86 (343)
T ss_dssp ---CC-EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCT-TTTHHHHSSCCH-HHHHHHHHHHHHHHHHHTTSC-
T ss_pred cCCCC-CeEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeC-CCCccccCCcCH-HHHHHHHHHHHHHHHHHHHCC-
Confidence 44433 457889999999999999853 433222222222222 22211 1233 445566677777766654333
Q ss_pred CcccCceEEEEcccc
Q 009868 76 NVDSGLKAIGLTNQR 90 (523)
Q Consensus 76 ~~~~~I~aIgis~~~ 90 (523)
.++ |.+++.++.+
T Consensus 87 -v~~-v~~vATsA~R 99 (343)
T 3cer_A 87 -IDG-LRFVATSATR 99 (343)
T ss_dssp -CSE-EEEEECHHHH
T ss_pred -CCe-EEEEecHHHH
Confidence 346 7777777744
|
| >3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A | Back alignment and structure |
|---|
Probab=81.07 E-value=1.7 Score=43.89 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=37.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcc-ccHHHHHHHHhhc
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGAT-VNNLLMQIQADLL 446 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~qi~Advl 446 (523)
-.+-++|-.+|.++..+-.+.-..+-+ ++.|+++||.. +++.+++.+.+-|
T Consensus 313 ~A~lA~d~f~yri~k~IGa~aa~L~G~--------vDaIVFTgGIGEns~~vR~~v~~~l 364 (415)
T 3sk3_A 313 DAKRAMDVYCHRLAKYIGSYTALMDGR--------LDAVVFTGGIGENAAMVRELSLGKL 364 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGSTTC--------CCEEEEEHHHHTTCHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEECCccccCCHHHHHHHHhhc
Confidence 356678999999999888775443334 79999999999 5666666666544
|
| >2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A* | Back alignment and structure |
|---|
Probab=80.60 E-value=1.6 Score=41.77 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCCCCccHH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTAL 461 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~al 461 (523)
..|..-|-..++-|.+..+..+++++++..+.+ -+|+++||.++ +++..+. +..+ .++-+..
T Consensus 201 ~nT~~ai~sGi~~g~~g~Ie~~i~~~~~e~~~~---------~~vi~TGG~a~------~l~~~~~-~~~~--d~~LvL~ 262 (271)
T 2f9w_A 201 QATAEAVERGCLLMLRGFVREQYAMACELLGPD---------CEIFLTGGDAE------LVRDELA-GARI--MPDLVFV 262 (271)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------CEEEEESTTGG------GTGGGCT-TCEE--CTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCHH------HHHhhCC-CCEE--CcChHHH
Confidence 468889999999999999999999998766533 57999999874 3445555 4333 2345555
Q ss_pred HHHHH
Q 009868 462 GAAFA 466 (523)
Q Consensus 462 GaA~l 466 (523)
|-.++
T Consensus 263 GL~~i 267 (271)
T 2f9w_A 263 GLALA 267 (271)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=80.60 E-value=5.9 Score=38.03 Aligned_cols=72 Identities=10% Similarity=0.054 Sum_probs=43.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcC------CceeecC-CCCccHH
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLG------SPVIRPA-DIETTAL 461 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg------~pv~~~~-~~e~~al 461 (523)
++.+++-.+..+-..+-.+... .. ++.|++.||.++.+.+.+.+-..+. .+|.... ..+++++
T Consensus 214 a~~~~~~~~~~La~~i~~l~~~--~~--------p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~ 283 (297)
T 4htl_A 214 SERLITEFYTGICTGLYNLIYL--FD--------PTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLL 283 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHH
Confidence 3444554555554444444322 34 6889999999976656554444432 2455555 4568899
Q ss_pred HHHHHHHHh
Q 009868 462 GAAFAAGLA 470 (523)
Q Consensus 462 GaA~lA~~~ 470 (523)
|||.++...
T Consensus 284 GAa~l~~~~ 292 (297)
T 4htl_A 284 GAVYHFLQE 292 (297)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999988754
|
| >3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A* | Back alignment and structure |
|---|
Probab=80.39 E-value=0.69 Score=47.77 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=35.5
Q ss_pred CCceEEEEecCCCCceEEEEcCCC------CEEEEEEeeeeeccCCCCe--EEeCHHHHHHHHHHHHHHHH
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQA------RPIGSHQVEFTQFYPEAGW--VEHEPMEILESVRVCMAKAL 67 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g------~i~~~~~~~~~~~~~~~g~--~e~d~~~~~~~~~~~l~~~~ 67 (523)
..+|.+.||+|++++|..|++.+. .++.... .... ..+|- ...+|+.+.+.+..+++.+.
T Consensus 32 ~~~y~~vID~GSns~Rl~Vy~~~~~~~~~~~~~~~~~-~~~~--~~~Gls~~~~~pe~~~~~l~~Ll~~a~ 99 (456)
T 3cj1_A 32 ALKYGIVLDAGSSHTSMFVYKWPADKENDTGIVGQHS-SCDV--QGGGISSYANDPSKAGQSLVRCLEQAL 99 (456)
T ss_dssp CEEEEEEEEECSSCEEEEEEEEETTSTTSTTCCEEEE-EEEC--SSSCGGGGTTSTHHHHHHTHHHHHHHH
T ss_pred CceEEEEEEcCCCCeEEEEEEEcCCCCCCccceeeee-eeee--cccccccccCCHHHHHHHHHHHHHHHH
Confidence 346888999999999999998422 1332211 1111 12221 12468887777766666554
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=80.26 E-value=3.7 Score=40.26 Aligned_cols=72 Identities=18% Similarity=-0.008 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecCC-CCccHHHHH
Q 009868 386 AHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPAD-IETTALGAA 464 (523)
Q Consensus 386 ~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~~-~e~~alGaA 464 (523)
.+.++..++-.+-.+...+... +.++.. ++.|+++||+|. ++.+.+.+.++.++.+++. ..+.|+|+.
T Consensus 251 ~~~i~~~~~e~~~~I~~~i~~~----~~~~~~-----~~~IvltGGGA~--l~~~~l~~~~~~~v~v~~~P~~a~a~G~~ 319 (329)
T 4apw_A 251 STVIKKVKEKFLKDAIKLIEKR----GFKLDQ-----LDSLIFIGGTTQ--KLKEQISKTYPNNSIITNNSQWTTCEGLY 319 (329)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH----TCCTTS-----CSEEEEESTTHH--HHHHHHHHHSTTCEECCSSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCHHH-----ccEEEEECChHH--HHHHHHHHHcCCCCEecCCChhhHHHHHH
Confidence 4555555555554444433332 333211 579999999986 4679999999988988774 447788987
Q ss_pred HHHH
Q 009868 465 FAAG 468 (523)
Q Consensus 465 ~lA~ 468 (523)
.++.
T Consensus 320 ~~~~ 323 (329)
T 4apw_A 320 KVAV 323 (329)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A | Back alignment and structure |
|---|
Probab=80.03 E-value=5.5 Score=34.89 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=36.4
Q ss_pred eEEEEecCCCCceEEEEcCCCC------EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR------PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~------i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.+||||-|++.+=.+++|.+|+ .+....+.++ + ..+..+=+..+.+.+.+++++
T Consensus 2 rILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~-----~---~~~~~~RL~~I~~~l~~~i~~ 61 (166)
T 4ep4_A 2 VVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTS-----P---QEPAKERVGRIHARVLEVLHR 61 (166)
T ss_dssp EEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECC-----T---TSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccccCceEEEEEEecCCccceEEEEEeCeEECC-----C---CCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998775 2333333332 1 234444455667777777776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 523 | ||||
| d2p3ra1 | 252 | c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co | 2e-82 | |
| d1r59o1 | 252 | c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c | 3e-79 | |
| d2p3ra2 | 247 | c.55.1.4 (A:254-500) Glycerol kinase {Escherichia | 2e-59 | |
| d1r59o2 | 235 | c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus | 7e-56 | |
| d1zc6a1 | 114 | c.55.1.5 (A:8-121) Probable N-acetylglucosamine ki | 4e-10 | |
| d1huxa_ | 259 | c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp | 1e-06 | |
| d2ch5a2 | 117 | c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAG | 0.001 |
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Score = 246 bits (628), Expect = 3e-79
Identities = 116/258 (44%), Positives = 164/258 (63%), Gaps = 10/258 (3%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ AIDQGTTS+R II+D + IGS Q EF Q++P++GWVEH EI SV+ +A A
Sbjct: 2 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 61
Query: 68 DKATADGHNVDSGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELP 127
++ + IG+TNQRETTV+W K+TG P+ NAIVW ++S + +L+ +
Sbjct: 62 IESGIRPEAI----AGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVD-- 115
Query: 128 GGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKKGDALFGTIDTWLIWNLTGGVN 187
G E GL I YFSA K+ W+++N++ +E G+ LFGTID+WL+W LT
Sbjct: 116 GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTD--- 172
Query: 188 GGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGWPI-T 246
G +HVTD SNASRTML N+ L+WD+ L+ L IP+ +LP++ SNSE+ G +
Sbjct: 173 GQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGS 232
Query: 247 GIPISGCLGDQHAAMLGQ 264
+PI+G GDQ AA+ GQ
Sbjct: 233 EVPIAGMAGDQQAALFGQ 250
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Score = 185 bits (469), Expect = 7e-56
Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 12/246 (4%)
Query: 267 KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQ 326
+KG K+TYGTGAFI+MNTGEE S + LL+T+ + + K YALEGSI +AG+A+Q
Sbjct: 2 EKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQ 59
Query: 327 WLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKA 386
WLRD L +I ++ + EELA + VY VPAF GL AP+W +ARG G+TR T+K
Sbjct: 60 WLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKE 119
Query: 387 HIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL 446
RA L+++ +Q KDV+D+M+KD+ + L+VDGGA N+LLMQ QAD+L
Sbjct: 120 DFVRATLQAVAYQSKDVIDTMKKDSGIDIPL--------LKVDGGAAKNDLLMQFQADIL 171
Query: 447 GSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAE 506
V R A++ETTALGAA+ AGLA+G +K+ + + + F P + E R E
Sbjct: 172 DIDVQRAANLETTALGAAYLAGLAVGFWKDLD--ELKSMAEEGQMFTPEMPAEERDNLYE 229
Query: 507 SWCRAV 512
W +AV
Sbjct: 230 GWKQAV 235
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Score = 55.1 bits (132), Expect = 4e-10
Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKAL 67
++ +D G T TR ++ P+ + + + ++V + A
Sbjct: 5 YLIGVDGGGTGTRIRLHASDGTPLAMAEGGA-------SALSQGIAKSWQAVLSTLEAAF 57
Query: 68 DKATADGHNVDSGLKAIGLT--NQRETTVLWSKSTGCPLYNAIVWMDART 115
+A + +GL+ + R+ + + D T
Sbjct: 58 QQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQAP-GFARLSLATDGYT 106
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Score = 47.5 bits (112), Expect = 1e-06
Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 31/150 (20%)
Query: 322 GAAVQWLRDSLGIISSASEIEELALQVNST---GGVYFVPAFNGLFAPWWRDDARGVCIG 378
G + + + L + S++ EL + V A + + + +
Sbjct: 131 GRFLDVMANILEV--KVSDLAELGAKSTKRVAISSTCTVFAESEVISQLSKGT------- 181
Query: 379 ITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLL 438
K I + S+ +V + + + + + GG N +
Sbjct: 182 -----DKIDIIAGIHRSVASRVIGLANRVGIVKD-------------VVMTGGVAQNYGV 223
Query: 439 MQIQADLLGSPVIRPADIETT-ALGAAFAA 467
+ LG + + ALGAA A
Sbjct: 224 RGALEEGLGVEIKTSPLAQYNGALGAALYA 253
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (83), Expect = 0.001
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAK 65
++ G ++ G T + ++ + + + +E + + +
Sbjct: 3 AIYGG-VEGGGTRSEVLLVSEDGKILAEADG------LSTNHWLIGTDKCVERINEMVNR 55
Query: 66 ALDKATADGHNVDSGLKAIGL 86
A KA G + L+++GL
Sbjct: 56 AKRKA---GVDPLVPLRSLGL 73
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1r59o1 | 252 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 100.0 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 100.0 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 99.15 | |
| d2ap1a2 | 117 | Putative regulator protein YcfX {Salmonella typhim | 98.9 | |
| d2hoea3 | 128 | N-acetylglucosamine kinase {Thermotoga maritima [T | 98.81 | |
| d2aa4a1 | 119 | N-acetylmannosamine kinase NanK {Escherichia coli | 98.7 | |
| d1z05a3 | 128 | Transcriptional regulator VC2007 {Vibrio cholerae | 98.68 | |
| d2gupa1 | 114 | Hypothetical protein SP2142 {Streptococcus pneumon | 98.48 | |
| d1z6ra2 | 129 | Mlc protein {Escherichia coli [TaxId: 562]} | 98.45 | |
| d1woqa1 | 129 | Inorganic polyphosphate/ATP-glucomannokinase PPGMK | 98.31 | |
| d1xc3a1 | 118 | Putative fructokinase YhdR {Bacillus subtilis [Tax | 98.24 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 98.21 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 97.86 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 97.71 | |
| d1q18a1 | 110 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 97.49 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 97.42 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 97.3 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 97.1 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 97.09 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 96.87 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 95.73 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 95.12 | |
| d1ig8a1 | 207 | Hexokinase {Baker's yeast (Saccharomyces cerevisia | 95.0 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 94.78 | |
| d1bdga1 | 208 | Hexokinase {Blood fluke (Schistosoma mansoni) [Tax | 94.58 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 94.34 | |
| d3bzka5 | 149 | Transcriptional accessory factor Tex {Pseudomonas | 94.23 | |
| d1zbsa2 | 107 | Hypothetical protein PG1100 {Porphyromonas gingiva | 94.07 | |
| d1czan3 | 205 | Mammalian type I hexokinase {Human (Homo sapiens) | 93.84 | |
| d1czan1 | 207 | Mammalian type I hexokinase {Human (Homo sapiens) | 93.34 | |
| d1saza1 | 172 | butyrate kinase 2 {Thermotoga maritima [TaxId: 233 | 92.99 | |
| d2gupa2 | 175 | Hypothetical protein SP2142 {Streptococcus pneumon | 92.84 | |
| d3bexa1 | 118 | Type III pantothenate kinase, CoaX {Thermotoga mar | 92.81 | |
| d1v4sa1 | 205 | Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | 91.65 | |
| d1t6ca1 | 126 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 91.52 | |
| d2aa4a2 | 170 | N-acetylmannosamine kinase NanK {Escherichia coli | 91.19 | |
| d1u6za2 | 124 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 89.77 | |
| d2ap1a1 | 186 | Putative regulator protein YcfX {Salmonella typhim | 88.8 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 87.54 | |
| d1z05a2 | 197 | Transcriptional regulator VC2007 {Vibrio cholerae | 86.89 | |
| d2e1za1 | 189 | Propionate kinase {Salmonella typhimurium [TaxId: | 86.84 | |
| d1g99a1 | 197 | Acetate kinase {Archaeon Methanosarcina thermophil | 86.47 | |
| d1nbwa2 | 239 | ATPase domain of the glycerol dehydratase reactiva | 84.66 | |
| d2hoea2 | 169 | N-acetylglucosamine kinase {Thermotoga maritima [T | 83.97 | |
| d1xc3a2 | 176 | Putative fructokinase YhdR {Bacillus subtilis [Tax | 83.68 | |
| d2ch5a1 | 227 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 83.24 | |
| d1woqa2 | 124 | Inorganic polyphosphate/ATP-glucomannokinase PPGMK | 83.1 | |
| d2d0oa2 | 241 | Diol dehydratase-reactivating factor large subunit | 81.57 |
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=100.00 E-value=2e-53 Score=413.18 Aligned_cols=251 Identities=46% Similarity=0.820 Sum_probs=229.4
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
.|+||||+|||++|++|||.+|+++++.+.+++..+|.+||+||||++||+++++++++++++ .+..+.+ |.+|||
T Consensus 1 nyvlgiDiGTtsvKa~l~D~~g~~~~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~~~~~---~~~~~~~-i~aI~i 76 (252)
T d1r59o1 1 NYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEA-IAGIGI 76 (252)
T ss_dssp CEEEEEBCCSSBCBCCEECSSSCBCCCCCCBCCCCCCSTTCCBCCGGGSSSTTTTTSHHHHTT---TTCCTTS-EEEEEE
T ss_pred CEEEEEEecccceeeeEEeCCCCEEEEEEEeCCceecCCCcEEECHHHHHHHHHHHHHHHhhh---hhhcccc-cceEEE
Confidence 389999999999999999999999999999999999999999999999999999999998876 4566778 999999
Q ss_pred ccccceeEEeeCCCCccccccccccccCCHHHHHHHHHhCCCChHHHHHHhCCCCCccChHHHHHHHhhcChHHHHHHhc
Q 009868 87 TNQRETTVLWSKSTGCPLYNAIVWMDARTSSVCRKLEKELPGGKTHFLEAVGLPISTYFSAVKLLWMMENVDAVKEAIKK 166 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~ 166 (523)
|+||++++++|+++|+|++|+++|+|.|+.++++++.+.. ..++++++||+++++.++++|++|+++|+||+++++++
T Consensus 77 s~~~~~~v~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~~--~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 154 (252)
T d1r59o1 77 TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDG--HTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADN 154 (252)
T ss_dssp CCCSSCCCCBCSSSCCCSSCCBCTTCCSSCHHHHHHHHHT--CHHHHTTTTCCCSSTTSHHHHSHHHHSSSSSSSTTTTT
T ss_pred eCCcceEEEEECCCCCCcccccccCccchHHHHHHHHhcC--CHHHHHHHHCCCCCccchHHHHHHHHHhhhHHHHHHHh
Confidence 9999999999975799999999999999999999999884 77889999999999999999999999999999999987
Q ss_pred CCceeeChhHHHHHhhcCCCCCceeEeecchhcccccccCCCCCCCHHHHhhcCCCCCCCCCcccCCccccccccCC-CC
Q 009868 167 GDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKIVSNSEIIGKIGKGW-PI 245 (523)
Q Consensus 167 ~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~~~-l~ 245 (523)
....+.++++||.|||||+. ..++|+|+|++|++||+++++|++++++.+|+++++||+|+++++++|+++... +.
T Consensus 155 ~~~~~~~~~~~l~~~Ltg~~---~~~~d~s~as~t~~~d~~~~~w~~~l~~~~gi~~~~LP~l~~~g~~~G~v~~~~~l~ 231 (252)
T d1r59o1 155 GELLFGTIDSWLVWKLTDGQ---VHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYG 231 (252)
T ss_dssp TCCBCCCHHHHHHHTSSSSC---CCEECHHHHTTSSSBCTTTSSBCHHHHTTTTCCSSSSCEECCSSSCCBCCSS-----
T ss_pred ccccccchHHHHHHHhcCCC---cccccccchhhccccCcccccchHHHHHHhCCCHHHCCCcccCCCceEEeChhhcCC
Confidence 77778899999999999852 678999999999999999999999999999999999999999999999997643 77
Q ss_pred CCCcEEEeccchhhhhhcCCC
Q 009868 246 TGIPISGCLGDQHAAMLGQAC 266 (523)
Q Consensus 246 ~g~pV~~g~gD~~aa~~g~g~ 266 (523)
.|+||++|+||++||++|..+
T Consensus 232 ~g~pV~~g~gD~~aa~iG~~a 252 (252)
T d1r59o1 232 SEVPIAGMAGDQQAALFGQMA 252 (252)
T ss_dssp --SCEEEECCTTTSHHHHTTC
T ss_pred CCCeEEEEhHHHHHHHHhCcC
Confidence 899999999999999999764
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=100.00 E-value=3.4e-50 Score=384.24 Aligned_cols=233 Identities=48% Similarity=0.764 Sum_probs=207.3
Q ss_pred CCCCeEEEecCceeeeeecCccccccCCCceeeeeeecCCCCCceeEeccchhchhHHHHHHHHHcCCCCCHHHHHHHHH
Q 009868 267 KKGEAKSTYGTGAFILMNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELAL 346 (523)
Q Consensus 267 ~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~ 346 (523)
+||++.+++|||++++++++++|..++++++++++|.++ ....|.++|++.++|.+++|+++.++.....+..++.+.
T Consensus 2 ~~G~~k~T~GTg~~v~~~tg~~~~~~~~gll~t~~~~~~--~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~ 79 (235)
T d1r59o2 2 EKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGIN--GKVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAA 79 (235)
T ss_dssp STTCBCCEESSSEECEEECTTSCCCCSSSCEEEECCCSS--SCCCEEEECCCSCSSHHHHHTTTTSCSSSSGGGGTTTTS
T ss_pred CCCCeEeccccceEEEEecCCccccCCCCcEEEEEEEeC--CccEEEeHHHHHHHHHHHHHHHhhhhcccchhhhccccc
Confidence 589999999999999888877777788899999998763 234699999999999999999998876544444444444
Q ss_pred hcCCCCceEEEcCCCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEE
Q 009868 347 QVNSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLL 426 (523)
Q Consensus 347 ~~~~~~gl~~~P~l~G~r~P~~~~~arg~~~gl~~~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i 426 (523)
..+++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||++|++++.|++..|.+ +++|
T Consensus 80 ~~~~~~g~~flP~~~G~~~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~~--------~~~i 151 (235)
T d1r59o2 80 KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGID--------IPLL 151 (235)
T ss_dssp SSSSCSSCEEECCTTCCCTTTCCSSCCCEEESCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CSEE
T ss_pred ccCCCCcceeeehhhhccccccCCCcceeEeecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CcEE
Confidence 45789999999999999999999999999999999999999999999999999999999999877888 8999
Q ss_pred EEecCccccHHHHHHHHhhcCCceeecCCCCccHHHHHHHHHHhccccCChhHHhcccCCCCCcEEeCCCCHHHHHHHHH
Q 009868 427 RVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFDSGERTKTSTTFKPVLNEEFRKKKAE 506 (523)
Q Consensus 427 ~~~GG~a~s~~~~qi~Advlg~pv~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~y~ 506 (523)
+++||+++|++|+|++||++|+||++++..|++++|||++|++++|.|+|++++ +++. +..++|+|+++.+++.++|+
T Consensus 152 ~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~e~~alGaA~la~~~~G~~~~~~~~-~~~~-~~~~~~~P~~~~~~~~~~Y~ 229 (235)
T d1r59o2 152 KVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDEL-KSMA-EEGQMFTPEMPAEERDNLYE 229 (235)
T ss_dssp EEEESTTSCHHHHHHHHHHHSSEEEEESCCCTTTHHHHHHHHHHHTSSSSSTTS-GGGC-CEEEEECCCSTTSSHHHHHT
T ss_pred EecCcchhCHHHHhhhhhccceeeeeccccchHHHHHHHHHHHHcCCCCCHHHH-Hhcc-CCCcEEcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887 5665 57789999988767778899
Q ss_pred HHHHH
Q 009868 507 SWCRA 511 (523)
Q Consensus 507 ~~~~~ 511 (523)
+|+++
T Consensus 230 ~wkkA 234 (235)
T d1r59o2 230 GWKQA 234 (235)
T ss_dssp TTTTT
T ss_pred HHHhh
Confidence 99875
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=99.15 E-value=1.8e-11 Score=101.36 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=71.1
Q ss_pred cCCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 4 AKEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 4 ~~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
++|+|+||||+|+|++|++|+|++|+++.+.+.+ +++.+++++++|+.+.+++++++++ .+....+ +..
T Consensus 1 psm~y~lGID~GGT~tk~~l~d~~G~il~~~~~~-------~~~~~~~~~~~~~~i~~~i~~~~~~---ag~~~~~-~~~ 69 (114)
T d1zc6a1 1 PSIRYLIGVDGGGTGTRIRLHASDGTPLAMAEGG-------ASALSQGIAKSWQAVLSTLEAAFQQ---AGLPAAP-ASA 69 (114)
T ss_dssp CCCCEEEEEEECSSCEEEEEEETTCCEEEEEEES-------CCCGGGCHHHHHHHHHHHHHHHHHH---TTCCCCC-GGG
T ss_pred CCccEEEEEEcCcceEEEEEEcCCCCEEEEEEcc-------CCCcccCHHHHHHHHHHHHHHHHHH---cCCChhh-hce
Confidence 3578999999999999999999999999875543 3456899999999999999999987 5666666 543
Q ss_pred ----EEEccccce--eEEeeCCCCccccccccccccCCH
Q 009868 84 ----IGLTNQRET--TVLWSKSTGCPLYNAIVWMDARTS 116 (523)
Q Consensus 84 ----Igis~~~~~--~v~~d~~~g~~l~~~i~w~D~R~~ 116 (523)
+++.+..+. ...+.+ ...++.++..++|.++.
T Consensus 70 ~~~~~g~aG~~~~~~~~~l~~-~~~~~~~v~v~nDa~~A 107 (114)
T d1zc6a1 70 CAIGLGLSGVHNRQWAGEFES-QAPGFARLSLATDGYTT 107 (114)
T ss_dssp EEEEEEESCCCTTSHHHHHHH-TCCCCSEEEEECHHHHH
T ss_pred eEEEEEecCCCcHHHHHHHHH-hCCCCCeEEEECHHHHH
Confidence 333332211 111112 33455577777777643
|
| >d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative regulator protein YcfX species: Salmonella typhimurium [TaxId: 90371]
Probab=98.90 E-value=2.8e-09 Score=88.15 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=65.6
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
+||||+|+|++|++++|.+|+++.+.+.+++ +.+++.+.+.+.+.++++..+. .. +.+|||+.
T Consensus 2 yiGiDiGgT~i~~~l~d~~g~i~~~~~~~t~---------~~~~~~~~~~i~~~i~~~~~~~-------~~-~~~igi~~ 64 (117)
T d2ap1a2 2 YYGFDIGGTKIALGVFDSTRRLQWEKRVPTP---------HTSYSAFLDAVCELVEEADQRF-------GV-KGSVGIGI 64 (117)
T ss_dssp EEEEEECSSEEEEEEEETTCCEEEEEEEECC---------CSCHHHHHHHHHHHHHHHHHHH-------TS-CCEEEEEE
T ss_pred EEEEEECcceEEEEEEeCCCCEEEEEEEeec---------ccCHHHHHHHHHHHHHHHHhhc-------Cc-ceeEEEec
Confidence 5999999999999999999999998887765 3468889999988888887662 24 66788877
Q ss_pred ccceeEEeeCCCCccccccc-cccccC
Q 009868 89 QRETTVLWSKSTGCPLYNAI-VWMDAR 114 (523)
Q Consensus 89 ~~~~~v~~d~~~g~~l~~~i-~w~D~R 114 (523)
+.++|.++|..+.+.+ .|.+..
T Consensus 65 ----pG~vd~~~g~i~~~~~~~w~~~~ 87 (117)
T d2ap1a2 65 ----PGMPETEDGTLYAANVPAASGKP 87 (117)
T ss_dssp ----SSBSCCTTSCCBCTTCTTTTTSC
T ss_pred ----CCccccccceeeccCccccCCCc
Confidence 3477876777655443 466553
|
| >d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=98.81 E-value=5.1e-09 Score=87.98 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=74.0
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
...|++|||+|.|+++++++|.+|+++.+.+.+++ ...+++.+.+.+.+.++++++... ....+ |.+|
T Consensus 2 ~~~~~igidig~~~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~-i~gi 69 (128)
T d2hoea3 2 NCAYVLGIEVTRDEIAACLIDASMNILAHEAHPLP--------SQSDREETLNVMYRIIDRAKDMME---KLGSK-LSAL 69 (128)
T ss_dssp GGCEEEEEEECSSEEEEEEEETTCCEEEEEEEECC--------SSCCHHHHHHHHHHHHHHHHHHHH---HTTCC-CCEE
T ss_pred CcEEEEEEEECCCEEEEEEEcCCCCEEEEEEEecc--------cCCCHHHHHHHHHHHHHHHHHHhc---cccCc-eEEE
Confidence 35699999999999999999999999998887766 245788899999998888877643 24467 9999
Q ss_pred EEccccceeEEeeCCCCcccc-ccccccccC
Q 009868 85 GLTNQRETTVLWSKSTGCPLY-NAIVWMDAR 114 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~-~~i~w~D~R 114 (523)
||+.. .++|.++|..+. |.+.|.|..
T Consensus 70 gi~~p----G~vd~~~g~i~~~~~l~w~~~~ 96 (128)
T d2hoea3 70 TVAAP----GPIDTERGIIIDPRNFPLSQIP 96 (128)
T ss_dssp EEEES----SCEETTTTEECCCSSCTTBTSC
T ss_pred eccee----eeEcCCCCEEEeeccccccCCc
Confidence 99984 467876777764 445687754
|
| >d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylmannosamine kinase NanK species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=9.9e-09 Score=85.05 Aligned_cols=84 Identities=10% Similarity=0.061 Sum_probs=58.8
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
++||||||+|++|++++|.+|+++.+.+.+++ ..++++.+.+.+.+.++++ ..+ +.+|||+
T Consensus 2 ~~lgiDiGgT~i~~~l~d~~G~i~~~~~~~~~--------~~~~~~~~~~~i~~~i~~~----------~~~-~~~igI~ 62 (119)
T d2aa4a1 2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTP--------ASQTPEALRDALSALVSPL----------QAH-AQRVAIA 62 (119)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECC--------SSCCHHHHHHHHHHHHTTT----------GGG-CSEEEEE
T ss_pred eEEEEEeCcCEEEEEEEcCCCCEEEeEEEecc--------ccCcHHHHHHHHHHHHHHh----------hcc-CceEEEE
Confidence 47899999999999999999999998888765 3456776665554443332 135 8888988
Q ss_pred cccceeEEeeCCCCccccccc--cccccC
Q 009868 88 NQRETTVLWSKSTGCPLYNAI--VWMDAR 114 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~~~i--~w~D~R 114 (523)
. +.++|.+.+..+.+.. .|.+..
T Consensus 63 ~----pG~v~~~~~~~~~~~~l~~w~~~~ 87 (119)
T d2aa4a1 63 S----TGIIRDGSLLALNPHNLGGLLHFP 87 (119)
T ss_dssp E----SSEEETTEEECSSGGGGGGGTTCC
T ss_pred e----eeeEcCCCcEEEccCccccccCCC
Confidence 7 3467874555554432 476553
|
| >d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Transcriptional regulator VC2007 species: Vibrio cholerae [TaxId: 666]
Probab=98.68 E-value=4.4e-08 Score=81.97 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=71.3
Q ss_pred CceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 6 EVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
+-++||||||.++++++++|.+|+++.+.+.+++ +.+++++++.+.+.+++++++ .+.+..+ |.+||
T Consensus 3 g~~~lgi~ig~~~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~~~~~~~-i~gIg 69 (128)
T d1z05a3 3 GWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFFQT---YAAQLDR-VTSIA 69 (128)
T ss_dssp TEEEEEEEEETTEEEEEEEETTSCEEEEEEEECC---------CCBHHHHHHHHHHHHHHHHHH---TTTTCCE-EEEEE
T ss_pred CCEEEEEEECCCEEEEEEEcCCCCEEEEEEeccc---------cCCHHHHHHHHHHHHHHHHHH---ccccccc-ceEEE
Confidence 3468999999999999999999999998877765 346778899999999999887 5566677 99999
Q ss_pred EccccceeEEeeCCCCccccc-cccccccC
Q 009868 86 LTNQRETTVLWSKSTGCPLYN-AIVWMDAR 114 (523)
Q Consensus 86 is~~~~~~v~~d~~~g~~l~~-~i~w~D~R 114 (523)
|+.. .++|.+.+....+ .+.|.+..
T Consensus 70 i~~p----G~vd~~~~~~~~~~~~~~~~~~ 95 (128)
T d1z05a3 70 ITLP----GLVNSEQGIVLQMPHYNVKNLA 95 (128)
T ss_dssp EEES----SEEETTTTEEEECSSSBCSSBC
T ss_pred eeee----eeeeccceeeeccccCCCCCcc
Confidence 9883 4678745554433 34576543
|
| >d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Hypothetical protein SP2142 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.48 E-value=1.9e-07 Score=76.39 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=55.2
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
.+++||+|+|++|++++|.+|+++.+.+.+++ .+.++++ +.+.+.+++ .+ +.+|||+
T Consensus 2 ~i~~iDiGgT~i~~~l~d~~g~i~~~~~~~t~----------~~~~~~~----~~i~~~~~~--------~~-i~gIGi~ 58 (114)
T d2gupa1 2 TIATIDIGGTGIKFASLTPDGKILDKTSISTP----------ENLEDLL----AWLDQRLSE--------QD-YSGIAMS 58 (114)
T ss_dssp CEEEEEEETTEEEEEEECTTCCEEEEEEECCC----------SSHHHHH----HHHHHHHTT--------SC-CSEEEEE
T ss_pred eEEEEEeCcccEEEEEEcCCCCEEEEEEEccc----------ccHHHHH----HHHHHHhhh--------cc-cceEEEe
Confidence 47899999999999999999999988777654 2334433 334444322 36 8999999
Q ss_pred cccceeEEeeCCCCcccc-cccccccc
Q 009868 88 NQRETTVLWSKSTGCPLY-NAIVWMDA 113 (523)
Q Consensus 88 ~~~~~~v~~d~~~g~~l~-~~i~w~D~ 113 (523)
. +.++|.++|.... +.+.|.+.
T Consensus 59 ~----pG~vd~~~g~i~~~~~l~~~~~ 81 (114)
T d2gupa1 59 V----PGAVNQETGVIDGFSAVPYIHG 81 (114)
T ss_dssp E----SSEECTTTCBEESCCSSGGGSS
T ss_pred c----cccccCCccEEEcccccCcccC
Confidence 8 4578986787664 44445443
|
| >d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Mlc protein species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=1.8e-07 Score=78.27 Aligned_cols=90 Identities=8% Similarity=0.084 Sum_probs=68.0
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
-+++|||+|.++++++++|.+|+++.+.+.+++ ..+++++.+.+.+.+++++++ .+....+ |.+|||
T Consensus 4 ~~~l~i~i~~~~i~~~l~Dl~G~~l~~~~~~~~---------~~~~~~~~~~l~~~i~~~l~~---~~~~~~~-i~gIgi 70 (129)
T d1z6ra2 4 WHYLSLRISRGEIFLALRDLSSKLVVEESQELA---------LKDDLPLLDRIISHIDQFFIR---HQKKLER-LTSIAI 70 (129)
T ss_dssp CEEEEEEEETTEEEEEEEETTCCEEEEEEEECC---------SSCSSCHHHHHHHHHHHHHHH---TGGGCCC-EEEEEE
T ss_pred eEEEEEEECCCEEEEEEEcCCCCEEEEEEeecc---------ccchhHHHHHHHHHHHHHHHh---cCccccc-ceeEEE
Confidence 478999999999999999999999998777765 345566788888888888877 3444567 999999
Q ss_pred ccccceeEEeeCCCCcccccc-c-ccccc
Q 009868 87 TNQRETTVLWSKSTGCPLYNA-I-VWMDA 113 (523)
Q Consensus 87 s~~~~~~v~~d~~~g~~l~~~-i-~w~D~ 113 (523)
+. +..+|.++|...... + .|.+.
T Consensus 71 ~~----pG~v~~~~~~~~~~~~~~~w~~~ 95 (129)
T d1z6ra2 71 TL----PGIIDTENGIVHRMPFYEDVKEM 95 (129)
T ss_dssp EE----SSEEETTTTEEEECTTCTTCSSB
T ss_pred ee----eeeeeecccceeccCcchhccCc
Confidence 88 347787566655432 2 45544
|
| >d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK species: Arthrobacter sp. KM [TaxId: 184230]
Probab=98.31 E-value=7e-07 Score=74.46 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=59.1
Q ss_pred ceEEEEecCCCCceEEEEcCC-CCEEEE-EEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQ-ARPIGS-HQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAI 84 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~-g~i~~~-~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aI 84 (523)
.++||||+|.|++|++++|.+ |+++.+ .+.+++ ....++.+.+.+.+.++++.++ .....+ +.+|
T Consensus 2 ~~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~--------~~~~~~~~~~~i~~~~~~l~~~----~~~~~~-~~gI 68 (129)
T d1woqa1 2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP--------QPATPESVAEAVALVVAELSAR----PEAPAA-GSPV 68 (129)
T ss_dssp CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC--------SSCCHHHHHHHHHHHHHHHHTS----TTCCCT-TCCE
T ss_pred CCEEEEEECcceEEEEEEECCCCEEEEEEeecccc--------cCCCHHHHHHHHHHHHHHHHhc----cccccc-ccee
Confidence 468999999999999999975 565543 344444 2346788888888887776544 223346 7888
Q ss_pred EEccccceeEEeeCCCCcccccc--ccccccC
Q 009868 85 GLTNQRETTVLWSKSTGCPLYNA--IVWMDAR 114 (523)
Q Consensus 85 gis~~~~~~v~~d~~~g~~l~~~--i~w~D~R 114 (523)
||+.. .++|+ ......+. ..|.+..
T Consensus 69 Gi~~p----G~vd~-~~~~~~~~~~~~w~~~~ 95 (129)
T d1woqa1 69 GVTFP----GIIQH-GVVHSAANVDKSWLNTD 95 (129)
T ss_dssp EEEES----SCEET-TEECCCTTSCGGGTTCB
T ss_pred eecce----eeEec-CeEEEecccCCCccccc
Confidence 88873 46676 22222222 3587654
|
| >d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative fructokinase YhdR species: Bacillus subtilis [TaxId: 1423]
Probab=98.24 E-value=1e-06 Score=72.30 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=43.9
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
+++|||+|+|++|++++|.+|+++.+.+.+++ .+++..+.+.+ .+++ .+ +.+|||+
T Consensus 1 l~~giDiGgT~i~~~l~d~~g~i~~~~~~~t~-----------~~~~~~~~i~~----~~~~--------~~-~~~igi~ 56 (118)
T d1xc3a1 1 MLGGIEAGGTKFVCAVGREDGTIIDRIEFPTK-----------MPDETIEKVIQ----YFSQ--------FS-LQAIGIG 56 (118)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECC-----------CHHHHHHHHHH----HHTT--------SC-CSEEEEE
T ss_pred CEEEEEeccCEEEEEEEcCCCCEEEEEEecCC-----------CHHHHHHHHHH----HHhh--------cc-ceeccee
Confidence 37899999999999999999999987766543 35555444333 2222 25 7788887
Q ss_pred cccceeEEeeC
Q 009868 88 NQRETTVLWSK 98 (523)
Q Consensus 88 ~~~~~~v~~d~ 98 (523)
. +.++|.
T Consensus 57 ~----~G~v~~ 63 (118)
T d1xc3a1 57 S----FGPVDN 63 (118)
T ss_dssp E----CSSBCC
T ss_pred E----Eeeeec
Confidence 7 335565
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.9e-06 Score=70.63 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=55.3
Q ss_pred CCceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCc-ccCceE
Q 009868 5 KEVFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNV-DSGLKA 83 (523)
Q Consensus 5 ~~~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~I~a 83 (523)
|..+++|||-|+|++|++|+|++|+++++.+.... .......+++++.+.+.+++++++. +.+. .+ |.+
T Consensus 1 m~~~~~GIDgGGTkT~~~l~d~~G~~l~~~~~g~~------N~~~~~~~~~~~~i~~~i~~~l~~~---~~~~~~~-i~~ 70 (117)
T d2ch5a2 1 MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLST------NHWLIGTDKCVERINEMVNRAKRKA---GVDPLVP-LRS 70 (117)
T ss_dssp SSCEEEEEEECTTCEEEEEEETTSCEEEEEEECCC------CHHHHCHHHHHHHHHHHHHHHHHHH---TCCTTCC-BSE
T ss_pred CCcEEEEEEcChhhEEEEEECCCCCEEEEEEcCCC------CcchhhHHHHHHHHHHHHHHHHHHh---cCCCCcc-ccE
Confidence 34589999999999999999999999987654322 1134577888999999999988773 3332 35 777
Q ss_pred EEEcc
Q 009868 84 IGLTN 88 (523)
Q Consensus 84 Igis~ 88 (523)
|+++.
T Consensus 71 i~~Gl 75 (117)
T d2ch5a2 71 LGLSL 75 (117)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=5.7e-05 Score=68.08 Aligned_cols=145 Identities=18% Similarity=0.036 Sum_probs=90.6
Q ss_pred eeEeccchhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCCCCCC--CCCCCceeEEcCC------CC
Q 009868 311 NYALEGSIAIAGAAVQWLRDSLGIISSASEIEELALQVNSTGGVYFVPAFNGLFAPW--WRDDARGVCIGIT------RF 382 (523)
Q Consensus 311 ~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~l~G~r~P~--~~~~arg~~~gl~------~~ 382 (523)
.|...|.+..+|.+++=+.+.+....++++++++|++=....--+.+|...|....+ -..+...+.+|-. ..
T Consensus 48 ~~~~iggT~~gGgtf~gla~lLlg~~~~~eI~klA~~G~~~~~dl~~~di~~~~~s~sgL~t~~~a~~fgk~~~~~~~~~ 127 (212)
T d2i7na2 48 NYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDS 127 (212)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSEEHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHHTT
T ss_pred ceEEecCCcccHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccCccCCCcCCCCCCcccCCHHHHHHHhhhhhhcccccc
Confidence 444445555788888877777644567999999987521111112334333321111 1233334434421 24
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHH-HHhh---c---CCceeecCC
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQI-QADL---L---GSPVIRPAD 455 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi-~Adv---l---g~pv~~~~~ 455 (523)
.+++|+++++++.++..+-.......+..+ +++|+++||.+.|..+++. ++.+ + +..+..++.
T Consensus 128 ~~~~DiaaS~q~~v~~~l~~~a~~aa~~~~----------~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~ 197 (212)
T d2i7na2 128 ISKEDLARATLVTITNNIGSIARMCALNEN----------IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEH 197 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCC
Confidence 578999999999999998887666555444 6799999998877655544 4332 2 677777775
Q ss_pred -CCccHHHHHH
Q 009868 456 -IETTALGAAF 465 (523)
Q Consensus 456 -~e~~alGaA~ 465 (523)
.-++|+||++
T Consensus 198 ~~y~galGA~l 208 (212)
T d2i7na2 198 EGYFGAVGALL 208 (212)
T ss_dssp TTCHHHHHHHH
T ss_pred hhhhHHHHHHH
Confidence 4578999766
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.71 E-value=1.7e-05 Score=73.45 Aligned_cols=74 Identities=22% Similarity=0.136 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHH
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTAL 461 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~al 461 (523)
...++++...++.+...+...+ ... .. ++.|++.||.++|+.+.+.+.+.++.++.+++ ..+++++
T Consensus 181 ~~~~~i~~~~~~~~~~~~~~~~---~~~--~~--------~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agai 247 (259)
T d1huxa_ 181 TDKIDIIAGIHRSVASRVIGLA---NRV--GI--------VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGAL 247 (259)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---HTT--CC--------CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH---Hhc--cC--------CCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHH
Confidence 4566777777766655544433 221 23 57899999999999999999999999999988 5567899
Q ss_pred HHHHHHHH
Q 009868 462 GAAFAAGL 469 (523)
Q Consensus 462 GaA~lA~~ 469 (523)
|||++|..
T Consensus 248 GAA~lA~~ 255 (259)
T d1huxa_ 248 GAALYAYK 255 (259)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
|
| >d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=3.8e-05 Score=61.72 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSH 34 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~ 34 (523)
+|+|++|||+|++|++++|.++.++...
T Consensus 2 ~~~L~~DIGGTn~r~alv~~~~~~l~~~ 29 (110)
T d1q18a1 2 KYALVGDVGGTNARLALCDIASGEISQA 29 (110)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEE
T ss_pred cEEEEEEECchhEEEEEEEcCCCeEEEE
Confidence 6899999999999999999877655443
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=9.5e-05 Score=70.74 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=43.9
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGL 86 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgi 86 (523)
+|+|+||||+|++|++++|.++.++...+...+ .+.+. +.+.+++++++ .+ .+ +.+|||
T Consensus 1 ~y~L~~DIGGT~ir~glvd~~~~~i~~~~~~~~----------~~~~~----~~~~i~~~~~~---~~---~~-~~~igI 59 (319)
T d1sz2a1 1 KYALVGDVGGTNARLALCDIASGEISQAKTYSG----------LDYPS----LEAVIRVYLEE---HK---VE-VKDGCI 59 (319)
T ss_dssp CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEG----------GGCSC----HHHHHHHHHHH---SC---CC-CCEEEE
T ss_pred CEEEEEEEChhheeeEEEECCCCEEEEEEEeCC----------CCHhH----HHHHHHHHHHh---cC---CC-cceEEE
Confidence 589999999999999999987655544333221 11122 33455566655 22 35 888888
Q ss_pred ccccceeEEeeCCC
Q 009868 87 TNQRETTVLWSKST 100 (523)
Q Consensus 87 s~~~~~~v~~d~~~ 100 (523)
+. +.++|.+.
T Consensus 60 ~~----pG~vd~~~ 69 (319)
T d1sz2a1 60 AI----ACPITGDW 69 (319)
T ss_dssp EE----SSCCCSSE
T ss_pred Ec----ccCCCCCc
Confidence 87 34677633
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.30 E-value=0.00015 Score=66.69 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=29.5
Q ss_pred ceEEEEecCCCCceEEEEcCCCCEEEEEEeeee
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQARPIGSHQVEFT 39 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~ 39 (523)
+|+||||+|+|++|++++|++|+++.+.+.+++
T Consensus 2 M~~lGIDiGGT~~k~~vvd~~g~il~~~~~~t~ 34 (259)
T d1huxa_ 2 IYTLGIDVGSTASKCIILKDGKEIVAKSLVAVG 34 (259)
T ss_dssp CEEEEEEECSSEEEEEEEETTTEEEEEEEEECC
T ss_pred cEEEEEEeCcceEEEEEEcCCCcEEEEEEecCC
Confidence 589999999999999999999999988776654
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.10 E-value=0.00045 Score=61.07 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=41.2
Q ss_pred ccEEEEecCccccHHHHHHHHhhcC-Cceeec-CCCCccHHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLG-SPVIRP-ADIETTALGAAFAAGL 469 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg-~pv~~~-~~~e~~alGaA~lA~~ 469 (523)
++.|.++||.++.|.+.+.+++.++ .++... +..++.|.|||+.|+.
T Consensus 143 i~~V~lvGG~sr~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ 191 (193)
T d1bupa2 143 IHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 191 (193)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHH
T ss_pred CCEEEEECCccccHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHh
Confidence 8899999999999999999999995 677654 5667889999999875
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=97.09 E-value=0.00043 Score=61.53 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceeec-CCCCccH
Q 009868 382 FTSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRP-ADIETTA 460 (523)
Q Consensus 382 ~~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~-~~~e~~a 460 (523)
.-+++++-.+ ++-+.-.+..+++..-+..+..+ .+++.|.++||++++|.+.+.+.+.|+.++.+. +..++.|
T Consensus 114 ~itr~~~~~~-~~~~~~~~~~~i~~~l~~a~~~~-----~~Id~v~lvGG~sr~p~l~~~i~~~f~~~~~~~~~p~~aVa 187 (198)
T d1dkgd2 114 KVTRAKLESL-VEDLVNRSIELLKVALQDAGLSV-----SDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVA 187 (198)
T ss_dssp EEEHHHHHHH-SHHHHHHHHHHHHHHHHTTTCCT-----TTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHH
T ss_pred EEcHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCh-----hHCcEEEEEcCccCCHHHHHHHHHHHCCCCCCCCChHHHHH
Confidence 3477777653 34444444444433222234431 238999999999999999999999999887664 4567899
Q ss_pred HHHHHHHHH
Q 009868 461 LGAAFAAGL 469 (523)
Q Consensus 461 lGaA~lA~~ 469 (523)
.|||+.|+.
T Consensus 188 ~GAa~~aa~ 196 (198)
T d1dkgd2 188 IGAAVQGGV 196 (198)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.00025 Score=62.40 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhc--cccccccccCccEEEEecCccccHHHHHHHHhhcCCceeecC-CCCccHH
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDAV--EKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIRPA-DIETTAL 461 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~g--~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~~~-~~e~~al 461 (523)
..++....++-+...+...++....... .. .+.|+++||+|+-|.+.+++++.||+|+.+.. +.++.|+
T Consensus 106 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--------~~~IvLvGGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~ 177 (196)
T d1jcea2 106 VREALRSVVVAIVESVRTTLEKTPPELVSDII--------ERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAK 177 (196)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHH--------HHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccc--------ccceEEeCchhcchhHHHHHHHHHCcCCccCCChHHHHHH
Confidence 3445555555555555555543322111 11 35699999999999999999999999999875 6778899
Q ss_pred HHHHH
Q 009868 462 GAAFA 466 (523)
Q Consensus 462 GaA~l 466 (523)
|||+.
T Consensus 178 GAai~ 182 (196)
T d1jcea2 178 GAGMV 182 (196)
T ss_dssp HHHHG
T ss_pred HHHHH
Confidence 99884
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=95.73 E-value=0.0062 Score=55.38 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCcc-ccHHHHHHHHhhc---CCceeecCC-CC
Q 009868 383 TSKAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGAT-VNNLLMQIQADLL---GSPVIRPAD-IE 457 (523)
Q Consensus 383 ~~~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~qi~Advl---g~pv~~~~~-~e 457 (523)
....++.++++|.++..+...+..+... .. +++|++.||+. .++.+.+.+.+.+ +..+..++. ..
T Consensus 187 ~~~~~~a~~~~~~~~~~l~~~~~~~~~~--~~--------~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~ 256 (267)
T d2ewsa1 187 FTPSNKLAAVIGVVGEVVTTMAITVARE--FK--------TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAF 256 (267)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH--TT--------CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGG
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhh--cC--------CCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccH
Confidence 4678999999998888887776666542 34 67898888875 5888889998887 456667664 44
Q ss_pred ccHHHHHHHH
Q 009868 458 TTALGAAFAA 467 (523)
Q Consensus 458 ~~alGaA~lA 467 (523)
++++|||++|
T Consensus 257 aGaiGA~~L~ 266 (267)
T d2ewsa1 257 SGAIGALYLE 266 (267)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 8899999875
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=95.12 E-value=0.015 Score=50.62 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhcCCceee
Q 009868 385 KAHIARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLLGSPVIR 452 (523)
Q Consensus 385 ~~~l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advlg~pv~~ 452 (523)
-.+++++.++-++-.++..++.+........ ...-+..|+++||+|+-+-+.++++++|++||++
T Consensus 95 l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~---~~~~~~~IvLtGGgs~l~gl~~~l~~~l~~~Vri 159 (191)
T d1e4ft2 95 LSVIIHARLREIMSKSKKFFREVEAKIVEEG---EIGIPGGVVLTGGGAKIPRINELATEVFKSPVRT 159 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---------CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhc---ccccCceEEEecchhhhhhHHHHHHHHHCCCeEE
Confidence 3567888888888777777776643211100 0000346999999999999999999999999975
|
| >d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]
Probab=95.00 E-value=0.033 Score=48.89 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=41.0
Q ss_pred eEEEEecCCCCceEEEEcCCCC-EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 8 FIGAIDQGTTSTRFIIYDHQAR-PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~-i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
-+++||+|+|+.|+++++..|+ .....+..+. .|..-....+.+++|+.+.+++.+.+++
T Consensus 64 ~flalDlGGTnlRv~~V~L~g~~~~~~~~~~~~--ip~~~~~~~~~~~lFd~iA~~i~~f~~e 124 (207)
T d1ig8a1 64 DFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYR--LPDAMRTTQNPDELWEFIADSLKAFIDE 124 (207)
T ss_dssp EEEEEEECSSEEEEEEEEEESSSCEEEEEEEEE--CCTTGGGCSCTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCceEEEEEEEEcCCCceEEeeeeee--CCHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999997553 2223333332 2221112345788999999999999876
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=94.78 E-value=0.037 Score=49.81 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=22.4
Q ss_pred EEEecCCCCceEEEEcCCCCEEEE
Q 009868 10 GAIDQGTTSTRFIIYDHQARPIGS 33 (523)
Q Consensus 10 lgIDiGtt~~K~~l~d~~g~i~~~ 33 (523)
+|||+|+|++|++++|++|+++.+
T Consensus 3 iGIDiGGT~ik~~lvd~~g~i~~~ 26 (267)
T d2ewsa1 3 VGIDAGGTLIKIVQEQDNQRTFKT 26 (267)
T ss_dssp EEEEECSSEEEEEEECSSCEEEEE
T ss_pred EEEEEChhhEEEEEEeCCCcEEEE
Confidence 799999999999999999998864
|
| >d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]
Probab=94.58 E-value=0.049 Score=47.75 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=46.5
Q ss_pred eEEEEecCCCCceEEEEcCCC--CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEE
Q 009868 8 FIGAIDQGTTSTRFIIYDHQA--RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIG 85 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g--~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIg 85 (523)
-+++||+|+||.|+++++..| +.....+..++ .|..- ...+.+++++.+.+++.+.+++ .+... + ..-+|
T Consensus 67 ~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~--ip~~~-~~~~~~~lFd~iA~~i~~fl~~---~~~~~-~-~l~lG 138 (208)
T d1bdga1 67 NFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYC--IPAEK-MSGSGTELFKYIAETLADFLEN---NGMKD-K-KFDLG 138 (208)
T ss_dssp EEEEEEESSSSEEEEEEEECC-CCCCEEEEEEEC--CCTTT-TTSBHHHHHHHHHHHHHHHHHH---TTCCS-S-CEEEE
T ss_pred eEEEEEecCceEEEEEEEecCCCcceEEEEEEee--CCHHH-ccCCHHHHHHHHHHHHHHHHHh---cCCCC-C-ccccE
Confidence 578899999999999999754 32222333333 12111 1235789999999999999876 34332 2 33356
Q ss_pred Ecc
Q 009868 86 LTN 88 (523)
Q Consensus 86 is~ 88 (523)
++-
T Consensus 139 fTF 141 (208)
T d1bdga1 139 FTF 141 (208)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=94.34 E-value=0.068 Score=46.32 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=50.0
Q ss_pred ceEEEEecCCCCceEEEEcC-CC--CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 7 VFIGAIDQGTTSTRFIIYDH-QA--RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~-~g--~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
.|+.+||+||+++|++++.. ++ ++++....+.. --..| .-.|.+..-+++.++++++-++ .+....+ ...
T Consensus 2 ~~~~aiDIGs~kI~~~v~~~~~~~~~iig~~~~~s~--Gi~~G-~I~d~~~~~~~I~~~I~~aE~~---a~~~i~~-~v~ 74 (193)
T d1e4ft1 2 VFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSR--GLDEG-EIKDAIAFKESVNTLLKELEEQ---LQKSLRS-DFV 74 (193)
T ss_dssp EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECC--SEETT-EESCHHHHHHHHHHHHHHHHHH---HTSCCCS-CEE
T ss_pred cEEEEEEcCCCEEEEEEEEEcCCcEEEEEEEEEecC--CccCC-eEEeHHHHHHHHHHHHHHHHHH---cCCCeee-EEE
Confidence 47899999999999998864 44 45555554432 11334 4469999999999999888776 3444322 233
Q ss_pred EEEccc
Q 009868 84 IGLTNQ 89 (523)
Q Consensus 84 Igis~~ 89 (523)
+++++.
T Consensus 75 v~~~~~ 80 (193)
T d1e4ft1 75 ISFSSV 80 (193)
T ss_dssp EEECCT
T ss_pred EEEcCc
Confidence 555553
|
| >d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Tex RuvX-like domain-like domain: Transcriptional accessory factor Tex species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.23 E-value=0.05 Score=45.12 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.3
Q ss_pred CceEEEEecC-CCCceEEEEcCCCCEEEEEEe
Q 009868 6 EVFIGAIDQG-TTSTRFIIYDHQARPIGSHQV 36 (523)
Q Consensus 6 ~~~~lgIDiG-tt~~K~~l~d~~g~i~~~~~~ 36 (523)
++.+||||=| .|++|.+++|++|+++....+
T Consensus 4 ~~~vlg~DPg~r~gck~AvlD~~G~vld~~vi 35 (149)
T d3bzka5 4 PRATLGLDPGLRTGVKVAVVDATGKLLDTATV 35 (149)
T ss_dssp SCCEEEEECCSTTCEEEEEECTTSCEEEEEEE
T ss_pred CceEEEECCCcccccEEEEECCCCCEEEEEEE
Confidence 5679999999 899999999999999976544
|
| >d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein PG1100 species: Porphyromonas gingivalis [TaxId: 837]
Probab=94.07 E-value=0.038 Score=43.15 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=42.8
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEcc
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLTN 88 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis~ 88 (523)
+|++|-|+|.++++|.| +|+++...+- .-..| ..++.+++.+.+.+.+.+.+.. ..++ |..|.+..
T Consensus 2 ilivDgGgTKT~~vl~d-~g~~i~~~~t--~g~Np----~~~~~~~~~~~l~~~~~~~l~~------~~~~-i~~i~~g~ 67 (107)
T d1zbsa2 2 ILIGDSGSTKTDWCIAK-EGKSLGRFQT--SGINP----FQQDRNEIDTALRSEVLPAIGQ------KASS-IRAVYFYG 67 (107)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEE--ECCCT----TTSCHHHHHHHHTTTTHHHHTT------STTT-CCEEEEEE
T ss_pred EEEEEeccccEEEEEEC-CCCeEEEEec--CCcCc----ccCCHHHHHHHHHHHHHHHHhc------cccC-CcEEEEEe
Confidence 67899999999999988 6888875432 21222 2356677777666554433322 3356 88776655
|
| >d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.023 Score=49.93 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=39.7
Q ss_pred ceEEEEecCCCCceEEEEcCCC---CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQA---RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g---~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
..+++||+|+||.|+++++..| +.+...+..++. |.. ...-..+++++.+.+++.+.++.
T Consensus 61 G~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~i--p~~-~~~~~~~eLFd~iA~~i~~fl~~ 123 (205)
T d1czan3 61 GDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAI--PIE-IMQGTGEELFDHIVSCISDFLDY 123 (205)
T ss_dssp EEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECC--CHH-HHTSBHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCceEEEEEEEecCCCCceEEEEeeeecC--CHH-HhcCCHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999988632 233333333321 110 01124688999999999999876
|
| >d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.032 Score=49.01 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=39.8
Q ss_pred ceEEEEecCCCCceEEEEcCCC---CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQA---RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g---~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
..+++||+|+||.|++++...| ..+...+..++ .|.. -.....+++++.+.+++.+.+++
T Consensus 63 G~flalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~--ip~~-~~~~~~~~lFd~IA~~i~~fl~~ 125 (207)
T d1czan1 63 GDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYD--TPEN-IVHGSGSQLFDHVAECLGDFMEK 125 (207)
T ss_dssp EEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEC--CCHH-HHSSBHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCceEEEEEEEeCCCCCccEEEEEEeec--CCHH-HhcCCHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999998643 23333333332 1110 01235678999999999998876
|
| >d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Acetokinase-like domain: butyrate kinase 2 species: Thermotoga maritima [TaxId: 2336]
Probab=92.99 E-value=0.07 Score=45.39 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=41.6
Q ss_pred eEEEEecCCCCceEEEEcCCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceEEEEc
Q 009868 8 FIGAIDQGTTSTRFIIYDHQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKAIGLT 87 (523)
Q Consensus 8 ~~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~aIgis 87 (523)
-+|.|..|+||+|..|||.+ +.+...+..+...-... .....+-.+...+++.+.+++ .+++.++ |.+||--
T Consensus 3 kILViN~GSSSlK~alf~~~-~~~~~~~i~~~~~e~~~---~~~i~d~~~~~~~~i~~~L~~---~~~~~~~-i~avghR 74 (172)
T d1saza1 3 RILTINPGSTSTKLSIFEDE-RMVKMQNFSHSPDELGR---FQKILDQLEFREKIARQFVEE---TGYSLSS-FSAFVSR 74 (172)
T ss_dssp EEEEEEECSSEEEEEEEETT-EEEEEEEEECCHHHHHT---CSSGGGGHHHHHHHHHHHHHT---TTCCGGG-CSEEEEE
T ss_pred EEEEEcCChHhheEEEEeCC-CceeEEEEEEccccccc---cCcccchHHHHHHHHHHHHHH---cCCChhc-CeEEEEC
Confidence 37889999999999999854 45555555433110000 001111122233444445444 6777788 9888765
Q ss_pred c
Q 009868 88 N 88 (523)
Q Consensus 88 ~ 88 (523)
.
T Consensus 75 v 75 (172)
T d1saza1 75 G 75 (172)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Hypothetical protein SP2142 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.84 E-value=1.5 Score=36.24 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=30.1
Q ss_pred ccEEEEecCccccHHHHHH----HHhhc------C-C-ceeecC-CCCccHHHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQI----QADLL------G-S-PVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi----~Advl------g-~-pv~~~~-~~e~~alGaA~lA~~ 469 (523)
++.|++.||.++++.+.+. +.+.+ . . +|+... ..+++++|||+++..
T Consensus 111 p~~IvlGG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~s~~~~~a~l~GAa~l~l~ 170 (175)
T d2gupa2 111 PGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 170 (175)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred CceEEECCcccchHHHHHHHHHHHHHHHhhccccCCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 7899999998877654432 22221 1 1 255544 356889999998764
|
| >d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: CoaX-like domain: Type III pantothenate kinase, CoaX species: Thermotoga maritima [TaxId: 2336]
Probab=92.81 E-value=0.054 Score=42.79 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=24.1
Q ss_pred EEEEecCCCCceEEEEcCCCCEEEEEEeeee
Q 009868 9 IGAIDQGTTSTRFIIYDHQARPIGSHQVEFT 39 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~g~i~~~~~~~~~ 39 (523)
.|.||||-|++|.++|+ +++++...+.++.
T Consensus 2 ~L~IDIGNT~ik~~l~~-~~~l~~~~~~~~~ 31 (118)
T d3bexa1 2 YLLVDVGNTHSVFSITE-DGKTFRRWRLSTG 31 (118)
T ss_dssp EEEEEECSSEEEEEEES-SSSSCEEEEEECC
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEccC
Confidence 57799999999999997 5667776666654
|
| >d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Glucokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.22 Score=43.32 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=40.1
Q ss_pred ceEEEEecCCCCceEEEEcCCC----C-EEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHH
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQA----R-PIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDK 69 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~g----~-i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~ 69 (523)
.-+++||+|+||.|+++++..+ . .+...+..++ .|.. ......+++++.+.+++.+.+++
T Consensus 59 G~flalDlGGTn~Rv~~V~L~~~~~~~~~~~~~~~~~~--ip~~-~~~~t~~~LFd~iA~~i~~fl~~ 123 (205)
T d1v4sa1 59 GDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYS--IPED-AMTGTAEMLFDYISECISDFLDK 123 (205)
T ss_dssp EEEEEEEESSSEEEEEEEEECCCSSSCCEEEEEEEEEE--CCST-TTSSBHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEecCCceEEEEEEEeCCCCCCCceeEEEeeccc--CChh-hccCCHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999632 2 2222233333 2221 11235788999999999999876
|
| >d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=91.52 E-value=0.21 Score=39.87 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=43.8
Q ss_pred EEEEecCCCCceEEEEcCC-CCEEEEEEeeeeeccCC----CCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 9 IGAIDQGTTSTRFIIYDHQ-ARPIGSHQVEFTQFYPE----AGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~~----~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
+..||||+.++|..+++.+ +++....+...+..... .| ..++ +-.+.+.+++++..+.+++.+ .++ +.+
T Consensus 5 iavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~Lg~~~~~~g--~ls~-~~i~~~~~~l~~f~~~~~~~~--v~~-~~~ 78 (126)
T d1t6ca1 5 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETG--RLQE-DRIEETIQVLKEYKKLIDEFK--VER-VKA 78 (126)
T ss_dssp EEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHS--SCCH-HHHHHHHHHHHHHHHHHHHTT--CSE-EEE
T ss_pred EEEEEEccceEEEEEEEecCCcceeeeeeeEEEEcccCccccC--CCCH-HHHHHHHHHHHHHHHHHHhcC--ccc-eEE
Confidence 6779999999999999964 43322223322222211 12 2233 335566667776666554444 346 777
Q ss_pred EEEcccc
Q 009868 84 IGLTNQR 90 (523)
Q Consensus 84 Igis~~~ 90 (523)
++.++.+
T Consensus 79 vaTsA~R 85 (126)
T d1t6ca1 79 VATEAIR 85 (126)
T ss_dssp EECHHHH
T ss_pred ehhHHHH
Confidence 7777644
|
| >d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylmannosamine kinase NanK species: Escherichia coli [TaxId: 562]
Probab=91.19 E-value=0.21 Score=41.82 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=43.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc-------CCceeecC-CCCcc
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL-------GSPVIRPA-DIETT 459 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl-------g~pv~~~~-~~e~~ 459 (523)
.++.+++-.+..+...+-.+... .. ++.|++.|+.+..+.+.+.+-..+ ..+|.... ..+++
T Consensus 90 ~a~~i~~~~~~~la~~l~~l~~~--ld--------P~~IvlgG~i~~~~~~~~~i~~~~~~~~~~~~~~I~~s~l~~~a~ 159 (170)
T d2aa4a2 90 QAQQLIHRSARTLARLIADIKAT--TD--------CQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAG 159 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhe--EC--------CCEEEEeChhhhhhhHHHHHHHHHHhccCCCCCeEEecCCCCcHH
Confidence 34455555555555555555432 34 789999998876555554443332 23455555 35688
Q ss_pred HHHHHHHHH
Q 009868 460 ALGAAFAAG 468 (523)
Q Consensus 460 alGaA~lA~ 468 (523)
++|||++|.
T Consensus 160 ~~GAA~lA~ 168 (170)
T d2aa4a2 160 LLGAALLAQ 168 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 999999984
|
| >d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.33 Score=38.57 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=45.1
Q ss_pred EEEEecCCCCceEEEEcC-CCCE--EEEEEeeeeec--cCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 9 IGAIDQGTTSTRFIIYDH-QARP--IGSHQVEFTQF--YPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~-~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
+.+||||+.++|..+++. ++.. +...+.++... ....| ..+. +-.+.+.++++++.+.+++. ..++ +.+
T Consensus 2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g--~l~~-~~i~~~~~~l~~f~~~~~~~--~v~~-i~~ 75 (124)
T d1u6za2 2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDN--MLSE-EAMTRGLNCLSLFAERLQGF--SPAS-VCI 75 (124)
T ss_dssp EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTC--CBCH-HHHHHHHHHHHHHHHHTTTC--CGGG-EEE
T ss_pred EEEEEEccceEEEEEEEecCCCeeEeeeeeEEeehhhhccccC--CcCH-HHHHHHHHHHHHHHHHHHhc--Ccce-ehh
Confidence 467999999999999985 3433 33333333321 12233 2233 34556667777777665433 3456 777
Q ss_pred EEEcccc
Q 009868 84 IGLTNQR 90 (523)
Q Consensus 84 Igis~~~ 90 (523)
+|.++.+
T Consensus 76 vaTsA~R 82 (124)
T d1u6za2 76 VGTHTLR 82 (124)
T ss_dssp EECHHHH
T ss_pred hHHHHHH
Confidence 8777754
|
| >d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative regulator protein YcfX species: Salmonella typhimurium [TaxId: 90371]
Probab=88.80 E-value=0.35 Score=40.84 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccccHHHHHHHHhhc---------CCceeecC-CCC
Q 009868 388 IARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATVNNLLMQIQADLL---------GSPVIRPA-DIE 457 (523)
Q Consensus 388 l~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~qi~Advl---------g~pv~~~~-~~e 457 (523)
.++.+++-.+..+...+-.+... .. ++.|++.||.++.+.+.+.+-+.+ ..+|..+. ..+
T Consensus 104 ~a~~i~~~~~~~la~~i~nl~~~--ld--------Pe~IvlGG~i~~~~~~~~~l~~~~~~~~~~~~~~~~I~~s~lg~~ 173 (186)
T d2ap1a1 104 QAHAHVERYLDLLAVCLGNILTI--VD--------PDLLVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDA 173 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSCTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--cC--------cCEEEECCchhhhHHHHHHHHHHHHHHhcCcCCCCEEEECCCCCh
Confidence 34455555555555555544332 34 689999999887544433222222 22344444 466
Q ss_pred ccHHHHHHHH
Q 009868 458 TTALGAAFAA 467 (523)
Q Consensus 458 ~~alGaA~lA 467 (523)
++++|||++|
T Consensus 174 a~~~GAA~la 183 (186)
T d2ap1a1 174 GGMRGAAFLH 183 (186)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8899999876
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=87.54 E-value=1.1 Score=36.53 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=32.7
Q ss_pred ccEEEEecCccccHHHHHHHHhhcCC---ceeecCCCC-ccHHHHHHHH
Q 009868 423 EFLLRVDGGATVNNLLMQIQADLLGS---PVIRPADIE-TTALGAAFAA 467 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~~~qi~Advlg~---pv~~~~~~e-~~alGaA~lA 467 (523)
+..|+++||+| +++.+.+...++. .+.+++.++ +.|+|..+++
T Consensus 116 ~~~iil~GGGs--~ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 116 YTHVMVIGGGA--ELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp CCEEEEESTTH--HHHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred cceEEEECchH--HHHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 78999999997 4678888888875 366766544 7788987654
|
| >d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Transcriptional regulator VC2007 species: Vibrio cholerae [TaxId: 666]
Probab=86.89 E-value=1.4 Score=37.40 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=39.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhh-----c-----CCceeecC-CCC
Q 009868 390 RAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADL-----L-----GSPVIRPA-DIE 457 (523)
Q Consensus 390 rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Adv-----l-----g~pv~~~~-~~e 457 (523)
+.+++-.+..+...+-.+... .. ++.|++.|+.++ .+.+.+.+-.. + ..+|.... ..+
T Consensus 103 ~~~~~~~~~~la~~i~nl~~~--ld--------P~~IviGG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~I~~s~lg~~ 172 (197)
T d1z05a2 103 VDVIQQLGRYLGAAIAIVINL--FN--------PEKILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFYKQ 172 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCSSC
T ss_pred HHHHHHHHHHHHHHHHhHHHh--cC--------CCEEEEecchHHhhHHHHHHHHHHHHHhcccccCCCCEEEECCCCCc
Confidence 345555555555555555432 34 689999888875 34333322221 1 24466655 466
Q ss_pred ccHHHHHHHH
Q 009868 458 TTALGAAFAA 467 (523)
Q Consensus 458 ~~alGaA~lA 467 (523)
++++|||+++
T Consensus 173 a~~~GAA~l~ 182 (197)
T d1z05a2 173 ATMPGAALIK 182 (197)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8899999887
|
| >d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Acetokinase-like domain: Propionate kinase species: Salmonella typhimurium [TaxId: 90371]
Probab=86.84 E-value=0.83 Score=38.97 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=25.2
Q ss_pred ceEEEEecCCCCceEEEEcC-CCCEEEEEEee
Q 009868 7 VFIGAIDQGTTSTRFIIYDH-QARPIGSHQVE 37 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~-~g~i~~~~~~~ 37 (523)
+.+|.|..|+||+|..|||. +.+++.....+
T Consensus 2 plILviN~GSSSlK~~lf~~~~~~~l~~g~~e 33 (189)
T d2e1za1 2 PVVLVINCGSSSIKFSVLDVATCDVLMAGIAD 33 (189)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred CEEEEEcCCchhheEEEEeCCCCcEEEEeeee
Confidence 47899999999999999995 66777665543
|
| >d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Acetokinase-like domain: Acetate kinase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=86.47 E-value=0.58 Score=40.31 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=23.3
Q ss_pred EEEEecCCCCceEEEEcC-CCCEEEEEEe
Q 009868 9 IGAIDQGTTSTRFIIYDH-QARPIGSHQV 36 (523)
Q Consensus 9 ~lgIDiGtt~~K~~l~d~-~g~i~~~~~~ 36 (523)
+|.|..|+||+|..|||. +.+++.+..+
T Consensus 3 ILViN~GSSS~K~alf~~~~~~~l~~g~~ 31 (197)
T d1g99a1 3 VLVINAGSSSLKYQLIDMTNESALAVGLC 31 (197)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCChHhheeEEEECCCCcEEEEeEE
Confidence 789999999999999995 6667766554
|
| >d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.66 E-value=0.82 Score=40.50 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=46.5
Q ss_pred ceEEEEecCCCCceEEEEcCC--C-CEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 7 VFIGAIDQGTTSTRFIIYDHQ--A-RPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 7 ~~~lgIDiGtt~~K~~l~d~~--g-~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
+.+.||||||+++++++...+ + +++.....+..-. + | .-.|.+.. .+++++++++ ++....+ |..
T Consensus 1 pii~glDIGtski~~~v~~~~~~~~~ilg~g~~~s~Gi--K-G-~I~ni~~~----~~aI~~av~~---A~~~~~~-i~~ 68 (239)
T d1nbwa2 1 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGM--K-G-TRDNIAGT----LAALEQALAK---TPWSMSD-VSR 68 (239)
T ss_dssp CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSS--T-T-SGGGHHHH----HHHHHHHHTT---SSCCGGG-EEE
T ss_pred CEEEEEEcCCCeEEEEEEEEcCCCEEEEEEEeecCCCC--c-c-eEECHHHH----HHHHHHHHHH---hcccccc-ceE
Confidence 368899999999999999742 2 5666666655422 3 5 34566654 4555566655 4566667 777
Q ss_pred EEEccc
Q 009868 84 IGLTNQ 89 (523)
Q Consensus 84 Igis~~ 89 (523)
|-+...
T Consensus 69 i~in~a 74 (239)
T d1nbwa2 69 IYLNEA 74 (239)
T ss_dssp EEEEEC
T ss_pred EEecCC
Confidence 766653
|
| >d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=83.97 E-value=1.8 Score=35.65 Aligned_cols=71 Identities=10% Similarity=-0.081 Sum_probs=42.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccccccccCccEEEEecCccc-cHHHHHHHHhhcC--------CceeecC-CCCc
Q 009868 389 ARAVLESMCFQVKDVLDSMQKDAVEKGVIKDAKSEFLLRVDGGATV-NNLLMQIQADLLG--------SPVIRPA-DIET 458 (523)
Q Consensus 389 ~rAv~Egia~~~r~~l~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~qi~Advlg--------~pv~~~~-~~e~ 458 (523)
++.+++-.+..+...+-.+... .. ++.|++.|+.++ ++.+.+.+...+. .++.... ..++
T Consensus 80 a~~~~~~~~~~la~~l~n~~~~--~d--------Pe~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a 149 (169)
T d2hoea2 80 VKEYFDDIARYFSIGLLNLIHL--FG--------ISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPV 149 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC--------CCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCH
Confidence 3344444444444444444332 34 689999999986 5555554433222 3355544 3678
Q ss_pred cHHHHHHHHHH
Q 009868 459 TALGAAFAAGL 469 (523)
Q Consensus 459 ~alGaA~lA~~ 469 (523)
.++|||+++..
T Consensus 150 ~~~GAa~~~~~ 160 (169)
T d2hoea2 150 IAFGAAVHALE 160 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999998764
|
| >d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative fructokinase YhdR species: Bacillus subtilis [TaxId: 1423]
Probab=83.68 E-value=1.3 Score=36.90 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=30.6
Q ss_pred ccEEEEecCccccHH-H---HHHHHhhc----CC---------ceeecC-CCCccHHHHHHHHHHhc
Q 009868 423 EFLLRVDGGATVNNL-L---MQIQADLL----GS---------PVIRPA-DIETTALGAAFAAGLAI 471 (523)
Q Consensus 423 ~~~i~~~GG~a~s~~-~---~qi~Advl----g~---------pv~~~~-~~e~~alGaA~lA~~~~ 471 (523)
++.|++.||.+++.. + .+.+.+.+ .. +|..+. ..+++++|||++|...+
T Consensus 104 P~~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~la~~~l 170 (176)
T d1xc3a2 104 PKKIILGGGVMQQKQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAHQAL 170 (176)
T ss_dssp CSCEEEESGGGGSTHHHHHHHHHHHHHHTTSSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHHHHHH
T ss_pred CCEEEEcChhhccHhHHHHHHHHHHHHHHHhhccccccccCCCeEEeCCCCCcHHHHHHHHHHHHHH
Confidence 789999999987643 2 22333332 21 244444 35688999999987653
|
| >d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=1.2 Score=38.98 Aligned_cols=49 Identities=20% Similarity=0.032 Sum_probs=32.2
Q ss_pred EEEEecCcccc-HHHHHHHHhhcC----------Cc-eeecCCCCccHHHHHHHHHHhccc
Q 009868 425 LLRVDGGATVN-NLLMQIQADLLG----------SP-VIRPADIETTALGAAFAAGLAIGV 473 (523)
Q Consensus 425 ~i~~~GG~a~s-~~~~qi~Advlg----------~p-v~~~~~~e~~alGaA~lA~~~~G~ 473 (523)
.|+++||..++ +.+.+.+.+.+. .| +........+++|||++|...+|.
T Consensus 148 ~Vvl~Ggv~~~~~~l~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~p~~GAa~LA~~~~g~ 208 (227)
T d2ch5a1 148 PILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGH 208 (227)
T ss_dssp EEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEESSCTHHHHHHHHHHTTTC
T ss_pred CeEEechHhhcchHHHHHHHHHHHHhcchhhcccCCeeEeecCCCccHHHHHHHHHHHcCC
Confidence 48999999876 444444433331 22 223335667899999999998875
|
| >d1woqa2 c.55.1.10 (A:140-263) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK species: Arthrobacter sp. KM [TaxId: 184230]
Probab=83.10 E-value=0.77 Score=36.21 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=30.6
Q ss_pred ccEEEEecCcccc-HHHHHHHHhhcCCceeecC-CCCccHHHHHHHHHH
Q 009868 423 EFLLRVDGGATVN-NLLMQIQADLLGSPVIRPA-DIETTALGAAFAAGL 469 (523)
Q Consensus 423 ~~~i~~~GG~a~s-~~~~qi~Advlg~pv~~~~-~~e~~alGaA~lA~~ 469 (523)
++.|++.||.++. +.|...+. ...|+.... ..+++.+|||+.|+.
T Consensus 76 Pe~IVlGGgi~~~~~~~~~~l~--~~~~i~~a~l~~~AgliGAAl~a~~ 122 (124)
T d1woqa2 76 PELFIVGGGISKRADEYLPNLR--LRTPIVPAVLRNEAGIVGAAIEIAL 122 (124)
T ss_dssp CSEEEEESGGGGGGGGTGGGCC--CSSCEEECSCSTTHHHHHHHHHHHH
T ss_pred CCEEEEcchHhhChHHHhhhhh--ccCeEEecCcCCcHHHHHHHHHHHh
Confidence 7899999999864 33432221 135677666 456889999998875
|
| >d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=81.57 E-value=1.4 Score=37.59 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=43.0
Q ss_pred CceEEEEecCCCCceEEEEc--CCCCEEEEEEeeeeeccCCCCeEEeCHHHHHHHHHHHHHHHHHHHhhCCCCcccCceE
Q 009868 6 EVFIGAIDQGTTSTRFIIYD--HQARPIGSHQVEFTQFYPEAGWVEHEPMEILESVRVCMAKALDKATADGHNVDSGLKA 83 (523)
Q Consensus 6 ~~~~lgIDiGtt~~K~~l~d--~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~a 83 (523)
++|+.|||||.+++-++|-. ..|++....+--.++ +.-.| ..++.. -+.+++++++++ .+.+.++ |.-
T Consensus 1 M~~IaGiDIGNstTEvala~v~~~g~~~fl~S~i~~T-TGiKG-T~~Ni~----Gv~~aL~~al~k---~g~~~~d-~~l 70 (241)
T d2d0oa2 1 MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAET-TGIKG-TLRNVF----GIQEALALVARG---AGIAVSD-ISL 70 (241)
T ss_dssp CEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEEC-CSSTT-STTHHH----HHHHHHHHHHHH---HTCCGGG-EEE
T ss_pred CceEEEEecCcchhhhheeeecCCCcEEEEecccccc-ccccc-cHHHHH----HHHHHHHHHHHH---cCCCHHH-hhe
Confidence 46899999999999999987 356654443332221 12222 123333 455566666666 4677777 666
Q ss_pred EEE
Q 009868 84 IGL 86 (523)
Q Consensus 84 Igi 86 (523)
|=+
T Consensus 71 Iri 73 (241)
T d2d0oa2 71 IRI 73 (241)
T ss_dssp EEE
T ss_pred eee
Confidence 655
|